BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9757
(659 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIM|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2HIM|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/360 (45%), Positives = 219/360 (60%), Gaps = 26/360 (7%)
Query: 74 ESKVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
+ + V YTGGTIGM+ +EQG + P S L ++ P + P
Sbjct: 23 KKSIYVAYTGGTIGMQRSEQGYI-PVSGHLQRQLALMPEFHR----------------PE 65
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASA 193
+ D + + EYTPL+DSS+M W IA DIK +Y+ YDGFVILHGTDT++YTASA
Sbjct: 66 MPD-----FTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA 120
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNR 253
LSFMLENLGKPVIVTGSQI + ++RSDG N + AL +A NY I EVT++FN++L RGNR
Sbjct: 121 LSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR 180
Query: 254 TVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYP 313
T K FDAF SPN P L + G+ I + + + V +G++ IYP
Sbjct: 181 TAKAHADGFDAFASPNLPPLLEAGIHIR-RLNTPPAPHGEGELIVHPITPQPIGVVTIYP 239
Query: 314 HISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGT 373
IS VR+F++ P++ +IL +YG GN P N++ + EL+ ASDR +++VN +QC G
Sbjct: 240 GISADVVRNFLRQPVKALILRSYGVGNAPQNKA-FLQELQEASDRGIVVVNLTQCMSGKV 298
Query: 374 S-DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELSTD 432
+ Y G L+ GVI G DMT EA LTKL Y+LS+ EL + + M N+RGEL+ D
Sbjct: 299 NMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQ-ELDTETIRKAMSQNLRGELTPD 357
>pdb|2P2D|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2D|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|A Chain A, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|B Chain B, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|C Chain C, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
pdb|2P2N|D Chain D, Crystal Structure And Allosteric Regulation Of The
Cytoplasmic Escherichia Coli L-Asparaginase I
Length = 358
Score = 286 bits (733), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 162/360 (45%), Positives = 219/360 (60%), Gaps = 26/360 (7%)
Query: 74 ESKVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
+ + V YTGGTIGM+ +EQG + P S L ++ P + P
Sbjct: 23 KKSIYVAYTGGTIGMQRSEQGYI-PVSGHLQRQLALMPEFHR----------------PE 65
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASA 193
+ D + + EYTPL+DSS+M W IA DIK +Y+ YDGFVILHGTDT++YTASA
Sbjct: 66 MPD-----FTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASA 120
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNR 253
LSFMLENLGKPVIVTGSQI + ++RSDG N + AL +A NY I EVT++FN++L RGNR
Sbjct: 121 LSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR 180
Query: 254 TVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYP 313
T K FDAF SPN P L + G+ I + + + V +G++ IYP
Sbjct: 181 TTKAHADGFDAFASPNLPPLLEAGIHIR-RLNTPPAPHGEGELIVHPITPQPIGVVTIYP 239
Query: 314 HISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGT 373
IS VR+F++ P++ +IL +YG GN P N++ + EL+ ASDR +++VN +QC G
Sbjct: 240 GISADVVRNFLRQPVKALILRSYGVGNAPQNKA-FLQELQEASDRGIVVVNLTQCMSGKV 298
Query: 374 S-DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELSTD 432
+ Y G L+ GVI G DMT EA LTKL Y+LS+ EL + + M N+RGEL+ D
Sbjct: 299 NMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQ-ELDTETIRKAMSQNLRGELTPD 357
>pdb|3NTX|A Chain A, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
pdb|3NTX|B Chain B, Crystal Structure Of L-Asparaginase I From Yersinia Pestis
Length = 341
Score = 263 bits (673), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/358 (41%), Positives = 214/358 (59%), Gaps = 26/358 (7%)
Query: 74 ESKVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
+ + V YTGGTIG + ++ G + P S L ++ P + P
Sbjct: 6 KKSIYVAYTGGTIGXQRSDNGYI-PVSGHLQRQLALXPEFHR----------------PE 48
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASA 193
D + + EY PL+DSS+ W IANDI++ Y+ YDGFVILHGTDT ++TASA
Sbjct: 49 XPD-----FTIHEYAPLIDSSDXTPEDWQHIANDIQQNYDLYDGFVILHGTDTXAFTASA 103
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNR 253
LSF LENL KPVI+TGSQI + ++RSDG N + AL LA N+ + EV+++FN++L RGNR
Sbjct: 104 LSFXLENLAKPVIITGSQIPLAELRSDGQTNLLNALYLAANHPVNEVSLFFNNQLFRGNR 163
Query: 254 TVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYP 313
T K FD F SPN L + G+ I S+ ++ V +G++ IYP
Sbjct: 164 TTKAHADGFDTFASPNLSVLLEAGIHIR-RQSSVVSPTSNGPLIVHRITPQPIGVVTIYP 222
Query: 314 HISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGT 373
IS VR+F+ P++ +IL +YG GN P +++L+DEL+ ASDR +++VN +QC G
Sbjct: 223 GISGAVVRNFLLQPVKALILRSYGVGNAP-QKAELLDELKNASDRGIVVVNLTQCISGSV 281
Query: 374 S-DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
+ Y G L+ GVI+G+D T EAALTKL Y+LS+S L+ + + + N+RGEL+
Sbjct: 282 NXGGYATGNALAQAGVISGFDXTVEAALTKLHYLLSQS-LSPNEIRQLXQQNLRGELT 338
>pdb|2OCD|A Chain A, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|B Chain B, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|C Chain C, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
pdb|2OCD|D Chain D, Crystal Structure Of L-Asparaginase I From Vibrio Cholerae
O1 Biovar Eltor Str. N16961
Length = 337
Score = 259 bits (663), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/355 (40%), Positives = 201/355 (56%), Gaps = 25/355 (7%)
Query: 77 VLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVKD 136
+ + YTGGTIG + ++ G + V + + P
Sbjct: 6 IYIAYTGGTIGXKKSDHG----------------------YVPVAGFXEKQLASXPEFHR 43
Query: 137 TRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALSF 196
L+ + EY PL DSS+ W IA+DI Y+ YDGFVILHGTDT +YTASALSF
Sbjct: 44 PEXPLFTIHEYDPLXDSSDXTPADWQLIADDIAANYDKYDGFVILHGTDTXAYTASALSF 103
Query: 197 MLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTVK 256
ENLGKPVIVTGSQI + +RSDG N + AL +A NY I EVT++FN++L RGNR+ K
Sbjct: 104 XFENLGKPVIVTGSQIPLADLRSDGQANLLNALHVAANYPINEVTLFFNNRLXRGNRSRK 163
Query: 257 MSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYPHIS 316
F AF SPN P L + G+ I+++ +F V +G++ YP IS
Sbjct: 164 SHADGFSAFSSPNLPPLLEAGINIELSTNVKVDEKPSGEFKVNPITPQPIGVITXYPGIS 223
Query: 317 NHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTS-D 375
+ +R+ + P+ ILLT+G GN P N +L+ +L+ AS+R VI+VN +QC G +
Sbjct: 224 HEVIRNTLLQPVNAXILLTFGVGNAPQN-PELLAQLKAASERGVIVVNLTQCLAGKVNXG 282
Query: 376 TYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
Y G L+ GVI+GYD TPEAAL KL Y+LS++ L+ ++ K +RGE +
Sbjct: 283 GYATGCALADAGVISGYDXTPEAALAKLHYLLSQN-LSYEEVKAKXQQVLRGEXT 336
>pdb|1WNF|A Chain A, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
pdb|1WNF|B Chain B, Crystal Structure Of Ph0066 From Pyrococcus Horikoshii
Length = 328
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 149/281 (53%), Gaps = 6/281 (2%)
Query: 151 LDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGS 210
+DS+ + W ++A +I++ YDG VI HGTDT++Y+AS LSFML N P+++TGS
Sbjct: 50 VDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGS 109
Query: 211 QISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTVKMSVKEFDAFDSPNF 270
+ I + SD N AL I + + FN K++ G R K+ FDAF+S N+
Sbjct: 110 MLPITEKNSDAPFNLRTALEFV-KLGIRGIYIAFNGKVMLGVRASKIRSMGFDAFESINY 168
Query: 271 PNLAKVGLTIDVNMKSIFRSSTIK-KFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPME 329
PN+A++ D ++ + +F + V ++++ P +S VR ++ +
Sbjct: 169 PNVAEIK---DDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGLSGDIVREALRLGYK 225
Query: 330 GVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTSDTYEAGKILSGIGVI 389
G+IL YG G P +DL + + S R +++ G Y+ G+I GVI
Sbjct: 226 GIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVI 285
Query: 390 NGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
DMT EA +TKL ++L ++ +++ K +M NI GEL+
Sbjct: 286 PAGDMTKEATITKLMWILGHTK-NIEEVKQLMGKNITGELT 325
>pdb|1WLS|A Chain A, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
pdb|1WLS|B Chain B, Crystal Structure Of L-Asparaginase I Homologue Protein
From Pyrococcus Horikoshii
Length = 328
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 144/281 (51%), Gaps = 6/281 (2%)
Query: 151 LDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGS 210
+DS+ + W ++A +I++ YDG VI HGTDT +Y+AS LSF L N P+++TGS
Sbjct: 50 VDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTXAYSASXLSFXLRNPPIPIVLTGS 109
Query: 211 QISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTVKMSVKEFDAFDSPNF 270
+ I + SD N AL I + + FN K+ G R K+ FDAF+S N+
Sbjct: 110 XLPITEKNSDAPFNLRTALEFV-KLGIRGIYIAFNGKVXLGVRASKIRSXGFDAFESINY 168
Query: 271 PNLAKVGLTIDVNMKSIFRSSTIK-KFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPME 329
PN+A++ D ++ + +F + V ++++ P +S VR ++ +
Sbjct: 169 PNVAEIK---DDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGLSGDIVREALRLGYK 225
Query: 330 GVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTSDTYEAGKILSGIGVI 389
G+IL YG G P +DL + + S R +++ G Y+ G+I GVI
Sbjct: 226 GIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTTQAIYDGVDLQRYKVGRIALEAGVI 285
Query: 390 NGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
D T EA +TKL ++L ++ +++ K + NI GEL+
Sbjct: 286 PAGDXTKEATITKLXWILGHTK-NIEEVKQLXGKNITGELT 325
>pdb|1ZQ1|A Chain A, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
pdb|1ZQ1|B Chain B, Structure Of Gatde Trna-Dependent Amidotransferase From
Pyrococcus Abyssi
Length = 438
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 143/283 (50%), Gaps = 19/283 (6%)
Query: 160 HWIKIANDIKEYYESYD-GFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIR 218
HW+KIA+++ + S D G V+ HGTDT YTA+ALSF L NLGKPV++ G+Q S +
Sbjct: 153 HWVKIAHEVAKALNSGDYGVVVAHGTDTXGYTAAALSFXLRNLGKPVVLVGAQRSSDRPS 212
Query: 219 SDGVHNFIGALILAGNYDIPEV---------TVYFNHKLIRGNRTVKMSVKEFDAFDSPN 269
SD N I ++ A + T H RG + K DAF S N
Sbjct: 213 SDAAXNLICSVRXATSEVAEVXVVXHGETGDTYCLAH---RGTKVRKXHTSRRDAFRSIN 269
Query: 270 FPNLAKVGLTIDVN-MKSIFRSSTIKKFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPM 328
+AK+ ++ ++ +R + ++ +V ++ V ++++YP IS+ + +
Sbjct: 270 DVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEKVALVKVYPGISSEIIDFLVDKGY 329
Query: 329 EGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTS-DTYEAGKILSGIG 387
+G+++ G G+ P +D+I + A + V + SQC G + + Y G+ L G
Sbjct: 330 KGIVIEGTGLGHTP---NDIIPSIERAVEEGVAVCXTSQCIYGRVNLNVYSTGRKLLKAG 386
Query: 388 VINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
VI D PE A KL +VL ++ L++ + +TN GE++
Sbjct: 387 VIPCEDXLPETAYVKLXWVLGHTQ-NLEEVRKXXLTNYAGEIT 428
>pdb|2D6F|A Chain A, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
pdb|2D6F|B Chain B, Crystal Structure Of Glu-Trna(Gln) Amidotransferase In The
Complex With Trna(Gln)
Length = 435
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 113/391 (28%), Positives = 181/391 (46%), Gaps = 50/391 (12%)
Query: 54 LHQDSDRRASLT-LNSSEDRLESKVLVLYTGGTIG-MEDNEQGALAPSSKPLTDKIRENP 111
L + S+ R L + ++ED V ++ TGGT+ + D GA+ P+ D +R NP
Sbjct: 69 LEKGSEPRIELPPVEAAEDPELPDVSIISTGGTVASIIDYRTGAVHPAFT-ADDLLRANP 127
Query: 112 LLYDRHYDVCKTQDGNVLVLPRVKDTR-RVLYKVVEYTPLLDSSNMCQVHWIKIANDI-K 169
L D + + R R ++ ++ S NM +W++ A +
Sbjct: 128 ELLD------------------IANIRGRAVFNIL-------SENMKPEYWVETARAVYG 162
Query: 170 EYYESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGAL 229
E + DG V+ HGTDT+ YT++ALSFML PV+ TG+Q S + SD N I
Sbjct: 163 EIKDGADGVVVAHGTDTMHYTSAALSFMLRT-PVPVVFTGAQRSSDRPSSDASLN-IQCS 220
Query: 230 ILAGNYDIPEVTVYFNHK-------LIRGNRTVKMSVKEFDAFDSPNFPNLAKV---GLT 279
+ A +I EVTV + L RG + KM D F S N LA+V G+
Sbjct: 221 VRAATSEIAEVTVCMHATMDDLSCHLHRGVKVRKMHTSRRDTFRSMNALPLAEVTPDGIK 280
Query: 280 IDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSG 339
I ++ +R + ++ ++ V ++ YP IS ++ + G+++ G G
Sbjct: 281 I---LEENYRKRGSDELELSDRVEERVAFIKSYPGISPDIIKWHLDEGYRGIVIEGTGLG 337
Query: 340 NFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTS-DTYEAGKILSGIGVINGYDMTPEA 398
+ P +I E A D V + SQC G + + Y G+ L GVI DM PE
Sbjct: 338 HCPDTLIPVIGE---AHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQAGVIPCDDMLPEV 394
Query: 399 ALTKLSYVLSKSELTLQQKKDIMMTNIRGEL 429
A K+ +VL +++ + +++M NI GE+
Sbjct: 395 AYVKMCWVLGQTD-DPEMAREMMRENIAGEI 424
>pdb|3NXK|A Chain A, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|B Chain B, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|C Chain C, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|D Chain D, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|E Chain E, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|F Chain F, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|G Chain G, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
pdb|3NXK|H Chain H, Crystal Structure Of Probable Cytoplasmic L-Asparaginase
From Campylobacter Jejuni
Length = 334
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 95/355 (26%), Positives = 160/355 (45%), Gaps = 55/355 (15%)
Query: 72 RLESKVLVLYTGGTI-GMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLV 130
+ +S++ +L TGGTI G D+ ++ + D +VL+
Sbjct: 6 KAKSRIAILGTGGTIAGFIDSTIATTGYAAGAI---------------------DIDVLI 44
Query: 131 --LPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDI-KEYYESYDGFVILHGTDTL 187
+P+++D + + E +DSSN C W+++A I K + E DG VI HGTDT
Sbjct: 45 KAVPQIRDLADISW---EQIANIDSSNXCDEIWLRLAKKIAKLFAEGIDGVVITHGTDTX 101
Query: 188 SYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPE--VTVYFN 245
TA L+ +++ KPV++ G+ I +DG N A+ L N + V V N
Sbjct: 102 EETAYFLNLTIKS-DKPVVLVGAXRPSTAISADGPKNLYNAVALVVNKEAKNKGVXVAIN 160
Query: 246 HKLIRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKK------FDVQ 299
K++ VK DAF SP+F +L + V+ K F ++ IK FDV
Sbjct: 161 DKILSARGVVKTHSLNVDAFSSPDFGDLGYI-----VDGKVFFYNNVIKAHTKNAPFDVS 215
Query: 300 SQLNL-NVGILRIYPH-ISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASD 357
+L V IL Y + S ++ + +G+++ G+G+ N+ D+ L+
Sbjct: 216 KLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDV---LKELLK 272
Query: 358 RNVIIVNCSQCSRG--GTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKS 410
+ + +V S+ G SD+ E +G I+ D+ P+ A L L+K+
Sbjct: 273 KGLKVVVSSRVVAGCVAVSDSDEK------LGFISAEDLNPQKARVLLXLALTKT 321
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 39/217 (17%)
Query: 476 GDIDKIKEMQNYGADISM---TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
G +D++KE AD S+ TD D R LH ACS G +IV++ L+ GV V+ +D+
Sbjct: 17 GKLDELKE--RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
Query: 533 SPLHEAVIADQHDIIRLLRHCGAHLTN------EPM------------------------ 562
SPLH A A + +I++ L GAH+ P+
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 563 ---FLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + AAA+G +K + L + N D+ G TPLH A +E ++L++Q
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
Query: 620 HVDLTIENKNGQSAIEVANQMQLNDIIELLKSSETKS 656
+ IENK ++ ++VA + L I++ L E S
Sbjct: 195 GASIYIENKEEKTPLQVA-KGGLGLILKRLAEGEEAS 230
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 100/217 (46%), Gaps = 39/217 (17%)
Query: 476 GDIDKIKEMQNYGADISM---TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
G +D++KE AD S+ TD D R LH ACS G +IV++ L+ GV V+ +D+
Sbjct: 17 GKLDELKE--RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
Query: 533 SPLHEAVIADQHDIIRLLRHCGAHLTN------EPM------------------------ 562
SPLH A A +I++ L GAH+ P+
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 563 ---FLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + AAA+G +K + L + N D+ G TPLH A +E ++L++Q
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194
Query: 620 HVDLTIENKNGQSAIEVANQMQLNDIIELLKSSETKS 656
+ IENK ++ ++VA + L I++ L E S
Sbjct: 195 GASIYIENKEEKTPLQVA-KGGLGLILKRLAEGEEAS 230
>pdb|3ECA|A Chain A, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|3ECA|B Chain B, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|3ECA|C Chain C, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|3ECA|D Chain D, Crystal Structure Of Escherichia Coli L-Asparaginase, An
Enzyme Used In Cancer Therapy
pdb|1NNS|A Chain A, L-asparaginase Of E. Coli In C2 Space Group And 1.95 A
Resolution
pdb|1NNS|B Chain B, L-asparaginase Of E. Coli In C2 Space Group And 1.95 A
Resolution
Length = 326
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 135/308 (43%), Gaps = 18/308 (5%)
Query: 117 HYDVCKTQDGNVL-VLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESY 175
+Y V K N++ +P++KD V + V + S +M W+ +A I +
Sbjct: 24 NYTVGKVGVENLVNAVPQLKDIANVKGEQVVN---IGSQDMNDNVWLTLAKKINTDCDKT 80
Query: 176 DGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNY 235
DGFVI HGTDT+ TA L ++ KPV++ G+ + +DG N A++ A +
Sbjct: 81 DGFVITHGTDTMEETAYFLDLTVK-CDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADK 139
Query: 236 DIPE--VTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSST 292
V V N ++ G K + + F S N+ L + ID + ++
Sbjct: 140 ASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTS 199
Query: 293 IKKFDVQSQLN--LNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLID 350
FDV S+LN VGI+ Y + S+ ++ + + +G++ G+GN + D
Sbjct: 200 DTPFDV-SKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNL---YKSVFD 255
Query: 351 ELRLASDRNVIIVNCSQCSRGGTSDTYEAGKILSGIGVINGYDMTPEAA--LTKLSYVLS 408
L A+ +V S+ G T+ E + G + + P+ A L +L+ +
Sbjct: 256 TLATAAKTGTAVVRSSRVPTGATTQDAEVDD--AKYGFVASGTLNPQKARVLLQLALTQT 313
Query: 409 KSELTLQQ 416
K +QQ
Sbjct: 314 KDPQQIQQ 321
>pdb|1HO3|A Chain A, Crystal Structure Analysis Of E. Coli L-asparaginase Ii
(y25f Mutant)
pdb|1HO3|B Chain B, Crystal Structure Analysis Of E. Coli L-asparaginase Ii
(y25f Mutant)
Length = 326
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 129/296 (43%), Gaps = 17/296 (5%)
Query: 128 VLVLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTL 187
V +P++KD V + V + S +M W+ +A I + DGFVI HGTDT+
Sbjct: 36 VNAVPQLKDIANVKGEQVVN---IGSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTM 92
Query: 188 SYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPE--VTVYFN 245
TA L ++ KPV++ G+ + +DG N A++ A + V V N
Sbjct: 93 EETAYFLDLTVK-CDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMN 151
Query: 246 HKLIRGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLN- 303
++ G K + + F S N+ L + ID + ++ FDV S+LN
Sbjct: 152 DTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDV-SKLNE 210
Query: 304 -LNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVII 362
VGI+ Y + S+ ++ + + +G++ G+GN + D L A+ +
Sbjct: 211 LPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNL---YKSVFDTLATAAKTGTAV 267
Query: 363 VNCSQCSRGGTSDTYEAGKILSGIGVINGYDMTPEAA--LTKLSYVLSKSELTLQQ 416
V S+ G T+ E + G + + P+ A L +L+ +K +QQ
Sbjct: 268 VRSSRVPTGATTQDAEVDD--AKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQ 321
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G+ D++K++ GAD++ +D D R LH A G +IVK + G V+ +D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A +I++LL + G ++N
Sbjct: 71 RTPLHYAAKEGHKEIVKLL---------------------------------ISKGADVN 97
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
DS G TPLH A + E V+ L+S+ D+ + +G++ +++A + +I++LL+
Sbjct: 98 AKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A +EG + +K + + GAD++ D D R LH A G +IVK + G V+ D+
Sbjct: 77 AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDG 136
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHL 557
+PL A +I++LL G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ DF LH A G L+IV+ L+NG V+ +D+
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
++PLH AA RG ++ ++ L G ++N
Sbjct: 81 VTPLHL---------------------------------AARRGHLEIVEVLLKNGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
DS G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 58/115 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + L AA G ++ ++ L G ++N D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
S+G+TPLH A ++E V LL D+ + +G + + +A + +I+E+L
Sbjct: 78 SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
++ G + + +A + +I+E+L
Sbjct: 74 NAKDSLGVTPLHLAARRGHLEIVEVL 99
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G+ D++K++ GAD + +D D R LH A G +IVK L G + +D+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A +I++LL L G + N
Sbjct: 71 RTPLHYAAENGHKEIVKLL---------------------------------LSKGADPN 97
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
DS G TPLH A N + E V+ LLS+ D + +G++ +++A + +I++LL+
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 35/157 (22%)
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
M++ +R I A G D VK LENG + D+ +PLH A +I++LL
Sbjct: 1 MSELGKRLI--EAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLL-- 56
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
L G + N DS G TPLH A N + E
Sbjct: 57 -------------------------------LSKGADPNAKDSDGRTPLHYAAENGHKEI 85
Query: 613 VRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
V+ LLS+ D ++ +G++ + A + +I++LL
Sbjct: 86 VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + +K + + GAD + D D R LH A G +IVK L G + D+
Sbjct: 77 AAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDG 136
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHL 557
+PL A +I++LL G L
Sbjct: 137 RTPLDLAREHGNEEIVKLLEKQGGWL 162
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 38/198 (19%)
Query: 476 GDIDKIKEMQNYGADISM---TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
G ++++KE + AD S+ TD D R LH ACS G +IV++ L+ GV V+ +D+
Sbjct: 18 GKLEELKE--SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 75
Query: 533 SPLHEAVIA---------------------------------DQHDIIRLLRHCGAHLTN 559
SPLH A A ++H+I +L GA+
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 135
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + + AAA+G +K + L + N D+ G TPLH A +E + L+SQ
Sbjct: 136 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 195
Query: 620 HVDLTIENKNGQSAIEVA 637
+ IENK ++ ++VA
Sbjct: 196 GASIYIENKEEKTPLQVA 213
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 38/198 (19%)
Query: 476 GDIDKIKEMQNYGADISM---TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
G ++++KE + AD S+ TD D R LH ACS G +IV++ L+ GV V+ +D+
Sbjct: 17 GKLEELKE--SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
Query: 533 SPLHEAVIA---------------------------------DQHDIIRLLRHCGAHLTN 559
SPLH A A ++H+I +L GA+
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 134
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + + AAA+G +K + L + N D+ G TPLH A +E + L+SQ
Sbjct: 135 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQ 194
Query: 620 HVDLTIENKNGQSAIEVA 637
+ IENK ++ ++VA
Sbjct: 195 GASIYIENKEEKTPLQVA 212
>pdb|1IHD|A Chain A, Crystal Structure Of Trigonal Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1IHD|C Chain C, Crystal Structure Of Trigonal Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1JAZ|A Chain A, Crystal Structure Of Monoclinic Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1JAZ|B Chain B, Crystal Structure Of Monoclinic Form Of D90e Mutant Of
Escherichia Coli Asparaginase Ii
pdb|1JJA|A Chain A, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|B Chain B, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|C Chain C, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|D Chain D, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|E Chain E, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
pdb|1JJA|F Chain F, Crystal Structure Of Orthorhombic Form Of D90e Mutant Of
Escherichia Coli L-Asparaginase Ii
Length = 326
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 135/308 (43%), Gaps = 18/308 (5%)
Query: 117 HYDVCKTQDGNVL-VLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESY 175
+Y V K N++ +P++KD V + V + S +M W+ +A I +
Sbjct: 24 NYTVGKVGVENLVNAVPQLKDIANVKGEQVVN---IGSQDMNDNVWLTLAKKINTDCDKT 80
Query: 176 DGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNY 235
DGFVI HGT+T+ TA L ++ KPV++ G+ + +DG N A++ A +
Sbjct: 81 DGFVITHGTETMEETAYFLDLTVK-CDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADK 139
Query: 236 DIPE--VTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSST 292
V V N ++ G K + + F S N+ L + ID + ++
Sbjct: 140 ASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTS 199
Query: 293 IKKFDVQSQLN--LNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLID 350
FDV S+LN VGI+ Y + S+ ++ + + +G++ G+GN + D
Sbjct: 200 DTPFDV-SKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNL---YKSVFD 255
Query: 351 ELRLASDRNVIIVNCSQCSRGGTSDTYEAGKILSGIGVINGYDMTPEAA--LTKLSYVLS 408
L A+ +V S+ G T+ E + G + + P+ A L +L+ +
Sbjct: 256 TLATAAKTGTAVVRSSRVPTGATTQDAEVDD--AKYGFVASGTLNPQKARVLLQLALTQT 313
Query: 409 KSELTLQQ 416
K +QQ
Sbjct: 314 KDPQQIQQ 321
>pdb|4ECA|A Chain A, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|B Chain B, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|C Chain C, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
pdb|4ECA|D Chain D, Asparaginase From E. Coli, Mutant T89v With Covalently
Bound Aspartate
Length = 326
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 18/308 (5%)
Query: 117 HYDVCKTQDGNVL-VLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESY 175
+Y V K N++ +P++KD V + V + S +M W+ +A I +
Sbjct: 24 NYTVGKVGVENLVNAVPQLKDIANVKGEQVVN---IGSQDMNDNVWLTLAKKINTDCDKT 80
Query: 176 DGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNY 235
DGFVI HG DT+ TA L ++ KPV++ G+ + +DG N A++ A +
Sbjct: 81 DGFVITHGVDTMEETAYFLDLTVK-CDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADK 139
Query: 236 DIPE--VTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSST 292
V V N ++ G K + + F S N+ L + ID + ++
Sbjct: 140 ASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTS 199
Query: 293 IKKFDVQSQLN--LNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLID 350
FDV S+LN VGI+ Y + S+ ++ + + +G++ G+GN + D
Sbjct: 200 DTPFDV-SKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNL---YKSVFD 255
Query: 351 ELRLASDRNVIIVNCSQCSRGGTSDTYEAGKILSGIGVINGYDMTPEAA--LTKLSYVLS 408
L A+ +V S+ G T+ E + G + + P+ A L +L+ +
Sbjct: 256 TLATAAKTGTAVVRSSRVPTGATTQDAEVDD--AKYGFVASGTLNPQKARVLLQLALTQT 313
Query: 409 KSELTLQQ 416
K +QQ
Sbjct: 314 KDPQQIQQ 321
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ TD D LH A S G L+IV+ L+NG V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
I+PLH A AA G ++ ++ L G ++N
Sbjct: 81 ITPLHLA---------------------------------AATGHLEIVEVLLKHGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D+ G TPLH A N ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A +I+E+L
Sbjct: 74 NASDLTGITPLHLAAATGHLEIVEVL 99
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G+ D++K++ GAD++ +D D R LH A G ++VK + G V+ +D+
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A ++++LL + G ++N
Sbjct: 71 RTPLHHAAENGHKEVVKLL---------------------------------ISKGADVN 97
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
DS G TPLH A N + E V+ L+S+ D+ + +G++ +++A + ++++LL+
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + +K + + GAD++ D D R LH A G ++VK + G V+ D+
Sbjct: 77 AAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG 136
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHL 557
+PL A ++++LL G L
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ TD+ LH A G L+IV+ L+ G V+ DNY
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH AA G ++ ++ L G ++N
Sbjct: 81 ATPLHL---------------------------------AADNGHLEIVEVLLKHGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D G TPLH A + ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAAR-GMIKRLQSYLLAGINLNQV 593
L EA A Q D +R+L GA + N +LG + AA+ G ++ ++ L G ++N
Sbjct: 18 LLEAARAGQDDEVRILMANGADV-NATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 594 DSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D+ G TPLH A N ++E V LL D+ ++ G + + +A +I+E+L
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D +G TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A +I+E+L
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVL 99
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 9/138 (6%)
Query: 420 IMMTNIRGELSTDAIHNNELDLAAAVAKTLHLSGRQELNKLKKIL-----YPAL-FQSAV 473
I+M N +TD + + L LAA KT HL + L K + Y A A
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAA---KTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
Query: 474 REGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDIS 533
G ++ ++ + +GAD++ D++ LH A G L+IV+ L+ G V+ +D + +
Sbjct: 89 DNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKT 148
Query: 534 PLHEAVIADQHDIIRLLR 551
++ D+ +L+
Sbjct: 149 AFDISIDNGNEDLAEILQ 166
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G+ D++K++ GAD++ +D D + LH A G ++VK L G + +D+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A ++++LL L G + N
Sbjct: 71 KTPLHLAAENGHKEVVKLL---------------------------------LSQGADPN 97
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
DS G TPLH A N + E V+ LLSQ D + +G++ +++A + ++++LL+
Sbjct: 98 AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLE 156
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G R++ L G ++N DS G TPLH A N + E V+ LLSQ D
Sbjct: 4 LGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP 63
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL---------KSSETKSKVH 659
++ +G++ + +A + ++++LL K S+ K+ +H
Sbjct: 64 NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 108
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 35/159 (22%)
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
M++ +R I A G D VK LENG V+ D+ +PLH A ++++LL
Sbjct: 1 MSELGKRLI--EAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLL-- 56
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
L G + N DS G TPLH A N + E
Sbjct: 57 -------------------------------LSQGADPNAKDSDGKTPLHLAAENGHKEV 85
Query: 613 VRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
V+ LLSQ D ++ +G++ + +A + ++++LL S
Sbjct: 86 VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLS 124
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + +K + + GAD + D D + LH A G ++VK L G + D+
Sbjct: 77 AAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDG 136
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHL 557
+PL A ++++LL G L
Sbjct: 137 RTPLDLAREHGNEEVVKLLEKQGGWL 162
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD + D R LH A +VG L+IV+ L NG V+ D
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A A+ G ++ ++ L G ++N
Sbjct: 69 TTPLHLA---------------------------------ASLGHLEIVEVLLKYGADVN 95
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ G+TPL+ A ++E V LL D+ ++K G++A +++ + D+ E+L+
Sbjct: 96 AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDLAEILQ 154
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 57/115 (49%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + L AAA G ++ ++ L G ++N VD
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVD 65
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ G TPLH A ++E V LL D+ ++ G + + +A +I+E+L
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVL 120
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G + N D G TPLH A ++E V LL D+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV 61
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ NG + + +A + +I+E+L
Sbjct: 62 NAVDTNGTTPLHLAASLGHLEIVEVL 87
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
+D R+ L A G+ D V+ + NG V+ DN +PLH A + +I+ +L
Sbjct: 12 SDLGRK--LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 554 GAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESV 613
GA + +F L AA G ++ ++ L G ++N +DS G+TPLH A +E V
Sbjct: 70 GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 614 RYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
LL D+ ++K G++A +++ D+ E+L+
Sbjct: 130 EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
G ++ ++ + GAD++ D D LH A G L+IV+ L++G V+ +D + +
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAF 150
Query: 536 HEAVIADQHDIIRLLR 551
++ D+ +L+
Sbjct: 151 DISIDNGNEDLAEILQ 166
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 35/180 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G D+++ + GAD++ TD + LH A + G+L+IV+ L+NG V+ D+
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 532 ISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
I+PLH A +I+ LL+H G ++
Sbjct: 73 ITPLHLAAYDGHLEIVEVLLKH----------------------------------GADV 98
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N D G TPLH A L+ +E V LL D+ ++ G +A +++ D+ E+L+
Sbjct: 99 NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 58/115 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + L AAA G ++ ++ L G ++N D
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
S G+TPLH A + ++E V LL D+ ++ G + + +A +I+E+L
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AAA G ++ + G ++N D GLTPLH A N +E V LL D+
Sbjct: 6 LGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV 65
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A +I+E+L
Sbjct: 66 NASDSAGITPLHLAAYDGHLEIVEVL 91
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ TD LH A + G L+IV+ L++G V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 532 ISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+PLH A + +I+ LL+H G ++
Sbjct: 81 STPLHLAALIGHLEIVEVLLKH----------------------------------GADV 106
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N VD+ G TPLH A + ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D+ GLTPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A + +I+E+L
Sbjct: 74 NAIDIMGSTPLHLAALIGHLEIVEVL 99
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A VG L+IV+ L+NG V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A A RG ++ ++ L G ++N
Sbjct: 81 STPLHLA---------------------------------AKRGHLEIVEVLLKYGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+IG TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 ADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAAR-GMIKRLQSYLLAGINLNQV 593
L EA A Q D +R+L GA + E + GD + AAR G ++ ++ L G ++N +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTY-GDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 594 DSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D G TPLH A ++E V LL D+ ++ G + + +A +I+E+L
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D+ G TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ +G + + +A + +I+E+L
Sbjct: 74 NALDFSGSTPLHLAAKRGHLEIVEVL 99
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 35/180 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ TD LH A + G L+IV+ L++G V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 532 ISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+PLH A + +I+ LL+H G ++
Sbjct: 81 STPLHLAALIGHLEIVEVLLKH----------------------------------GADV 106
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N VD+ G TPLH A + ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D+ GLTPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A + +I+E+L
Sbjct: 74 NAIDIXGSTPLHLAALIGHLEIVEVL 99
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D D LH A G L+IV+ L+ G V+ +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A A G ++ ++ L AG ++N
Sbjct: 69 YTPLHLA---------------------------------AREGHLEIVEVLLKAGADVN 95
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D G TPLH A ++E V LL D+ ++K G++ ++A + DI E+L+
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Query: 652 S 652
+
Sbjct: 156 A 156
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A ++E V LL D+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
++K+G + + +A + +I+E+L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVL 87
>pdb|1WSA|A Chain A, Structure Of L-Asparaginase Ii Precursor
pdb|1WSA|B Chain B, Structure Of L-Asparaginase Ii Precursor
Length = 330
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 20/270 (7%)
Query: 151 LDSSNMCQVHWIKIANDIKEYY--ESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVT 208
+ S M W+K+A + E + + +I HGTDT+ TA L+ +++ KPV++
Sbjct: 58 IGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLNLTVKSQ-KPVVLV 116
Query: 209 GSQISIFQIRSDGVHNFIGALILAGNYDIPE--VTVYFNHKLIRGNRTVKMSVKEFDAFD 266
G+ + +DG N A+ +A N V + N ++ K++ +AF
Sbjct: 117 GAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREATKLNTTAVNAFA 176
Query: 267 SPNFPNLAKVGLT----IDVNMKSIFRSSTIKKFDVQSQLNL-NVGILRIYPHISNHTVR 321
S PN K+G ++ +S+ + +FD+ L V IL +P ++ V
Sbjct: 177 S---PNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVDILYAHPDDTDVLVN 233
Query: 322 SFMQSPMEGVILLTYGSGN-FPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTSDTYEAG 380
+ +Q+ +G+I G+GN FP + + L A+ V++ S+ G T T EA
Sbjct: 234 AALQAGAKGIIHAGMGNGNPFPLTQ----NALEKAAKSGVVVARSSRVGSGST--TQEAE 287
Query: 381 KILSGIGVINGYDMTPEAALTKLSYVLSKS 410
+G + + P+ A L L+K+
Sbjct: 288 VDDKKLGFVATESLNPQKARVLLMLALTKT 317
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ +D LH A G L+IV+ L+NG V+ D+
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
++PLH A A RG ++ ++ L G ++N
Sbjct: 81 VTPLHLA---------------------------------ADRGHLEVVEVLLKNGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 ANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D +G TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
++ G + + +A +++E+L
Sbjct: 74 NADDSLGVTPLHLAADRGHLEVVEVL 99
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D D LH A G L+IV+ L+ G V+ +D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A A G ++ ++ L AG ++N
Sbjct: 81 YTPLHLA---------------------------------AREGHLEIVEVLLKAGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
++K+G + + +A + +I+E+L
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVL 99
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D D LH A G L+IV+ L+ G V+ +D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH AA G ++ ++ L AG ++N
Sbjct: 69 YTPLHL---------------------------------AAREGHLEIVEVLLKAGADVN 95
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D G TPLH A ++E V LL D+ ++K G++ ++A DI E+L+
Sbjct: 96 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Query: 652 S 652
+
Sbjct: 156 A 156
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A ++E V LL D+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
++K+G + + +A + +I+E+L
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVL 87
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V+ D+ +PLH A I +I+ +L GA + N
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAA 76
Query: 562 MFLGDV-LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH 620
+GD L AA G ++ ++ L G ++N D+ G TPLH A ++E V LL
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 621 VDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ ++K G++A +++ D+ E+L+
Sbjct: 137 ADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A + ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+K G + + +A +I+E+L
Sbjct: 74 NAADKMGDTPLHLAALYGHLEIVEVL 99
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
G ++ ++ + GAD++ TD LH A G L+IV+ L+ G V+ +D + +
Sbjct: 91 GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAF 150
Query: 536 HEAVIADQHDIIRLLR 551
++ D+ +L+
Sbjct: 151 DISIDNGNEDLAEILQ 166
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A +G +IV+ L++G V+ RD
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A A G ++ ++ L G ++N
Sbjct: 81 WTPLHLA---------------------------------ADNGHLEIVEVLLKYGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ GLTPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A + E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ +G + + +A +I+E+L
Sbjct: 74 NARDTDGWTPLHLAADNGHLEIVEVL 99
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 70/136 (51%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V+ DN ++PLH A ++ +I+ +L GA +
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
++ L AA G ++ ++ L G ++N D G TPLH A ++E V LL
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137
Query: 622 DLTIENKNGQSAIEVA 637
D+ ++K G++A +++
Sbjct: 138 DVNAQDKFGKTAFDIS 153
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N VD+ GLTPLH A ++ ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A +I+E+L
Sbjct: 74 DAADVYGFTPLHLAAMTGHLEIVEVL 99
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ ++ + YGAD++ D LH A G L+IV+ L+ G V+ +D +
Sbjct: 87 AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFG 146
Query: 532 ISPLHEAVIADQHDIIRLLRH 552
+ ++ D+ + R+
Sbjct: 147 KTAFDISIDNGNEDLAKSCRN 167
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 61/119 (51%)
Query: 499 RNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
R LH A G L++VK LE G V+ +D +PLH A ++++LL GA +
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 559 NEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLL 617
+ L AA G ++ ++ L AG ++N D G TPLH A N ++E V+ LL
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G ++ +K + GAD++ D + R LH A G L++VK LE G V+ +D
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAH 556
+PLH A ++++LL GA+
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 571 AAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNG 630
AA G ++ ++ L AG ++N D G TPLH A N ++E V+ LL D+ ++KNG
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 631 QSAIEVANQMQLNDIIELL 649
++ + +A + ++++LL
Sbjct: 69 RTPLHLAARNGHLEVVKLL 87
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G TPLH A N ++E V+ LL D+ ++KNG++ + +A + ++++LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 74/149 (49%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V+ D + I+PLH V +II +L A +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD 77
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L AA RG ++ ++ L G ++N +D G TPLH A + ++E V LL
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ ++K G++A +++ D+ E+L+
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G+TPLH V N ++E + LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+K+G + + +A +I+E+L
Sbjct: 74 NASDKSGWTPLHLAAYRGHLEIVEVL 99
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%)
Query: 473 VREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
V G ++ I+ + Y AD++ +D LH A G L+IV+ L+ G V+ D
Sbjct: 55 VNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGY 114
Query: 533 SPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A +I+ +L GA + + F
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGADVNAQDKF 145
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ ++ + YGAD++ D+ LH A G L+IV+ L+ G V+ +D +
Sbjct: 87 AAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFG 146
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 147 KTAFDISIDNGNEDLAEILQ 166
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 27/198 (13%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
A+F +A GD +++ + GADI+ + D LH AC +D+VK+ +ENG +++
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGAHL-----------------------TNEPMF 563
DN PLH A DI L GAH+ NE
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161
Query: 564 LG---DVLTNAAARGMIKRLQSYLLAG-INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
G + R M++ + +L +G IN + G T LH A E ++ L+
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA 221
Query: 620 HVDLTIENKNGQSAIEVA 637
D+ I++ +G + + A
Sbjct: 222 RYDVNIKDYDGWTPLHAA 239
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 94/211 (44%), Gaps = 28/211 (13%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
AL Q+ + + ++D +K + GA+I+ D + LH A S G LDI +Y + G V
Sbjct: 76 ALHQACI-DDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134
Query: 527 RDNYDISPLH----------------------EAVIADQHDI-IRLLRHC--GAHLTN-- 559
++ +PL EA ++ I +R R H+ +
Sbjct: 135 VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR 194
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
G L AAA+G + L+ + A ++N D G TPLHAA E+ R L+
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
Query: 620 HVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ NK GQ+A +VA++ L + EL K
Sbjct: 255 LCDMEAVNKVGQTAFDVADEDILGYLEELQK 285
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
G V A + G + + L G ++N + GLT LH A +++N++ V++L+ ++
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 625 IENKNGQSAIEVANQMQLNDIIELLKS 651
+ G + A DI E L S
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLIS 127
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A G L+IV+ L+NG V+ D
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A AH G ++ ++ L G ++N
Sbjct: 81 STPLHLA----------------AHF-----------------GHLEIVEVLLKNGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D G+TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQ 166
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A + D +R+L GA + + L AA G ++ ++ L G ++N D
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
++G TPLH A ++E V LL D+ ++ NG + + +A +I+E+L
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D +G TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A +I+E+L
Sbjct: 74 NAYDTLGSTPLHLAAHFGHLEIVEVL 99
>pdb|3PGA|1 Chain 1, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|2 Chain 2, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|3 Chain 3, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
pdb|3PGA|4 Chain 4, Structural Characterization Of Pseudomonas 7a Glutaminase-
Asparaginase
Length = 337
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 23/223 (10%)
Query: 162 IKIANDIKEYYES--YDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRS 219
+K+ + E +S DG VI HGTDTL TA L L N KP++V GS + +
Sbjct: 76 LKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLDLTL-NTDKPIVVVGSMRPGTAMSA 134
Query: 220 DGVHNFIGALILAGNYDI--PEVTVYFNHKLIRGNRTVKMSVK-EFDAFDSPNFPNLAKV 276
DG+ N A+ +A N D V V N + I+ R V S+ + +AF S P
Sbjct: 135 DGMLNLYNAVAVASNKDSRGKGVLVTMNDE-IQSGRDVSKSINIKTEAFKSAWGP----- 188
Query: 277 GLTIDVNMKSIFRSSTIKKFDVQSQLNL-------NVGILRIYPHISNHTVRSFMQSPME 329
L + V KS + K+ V S+ ++ V I Y ++++ ++ Q+ +
Sbjct: 189 -LGMVVEGKSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGNVTDTAYKALAQNGAK 247
Query: 330 GVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGG 372
+I G+G+ S + + LR + I+ S ++GG
Sbjct: 248 ALIHAGTGNGSVSSRLTPALQTLRKTGTQ---IIRSSHVNQGG 287
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 1/171 (0%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG-VSVHIR 527
A ++ +K + GA + D + LH A G ++V+Y L NG + V+ +
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQ 107
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAG 587
D+ +P+ A D+++LL G+ + L AA G + + L A
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAK 167
Query: 588 INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVAN 638
+L+ V+ G +PLH A N + V LS+ D+T++NK G++ ++ A+
Sbjct: 168 CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCAS 218
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 3/167 (1%)
Query: 490 DISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRL 549
+ M ++R+ LH A G +DI ++ G ++ +PL EA + + ++
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 550 LRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAG--INLNQVDSIGLTPLHAAVLN 607
L GA + + L AA +G + +Q YLL+ +++N D G TP+ A
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQ-YLLSNGQMDVNCQDDGGWTPMIWATEY 121
Query: 608 NNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKSSET 654
+++ V+ LLS+ D+ I + + A DI E+L +++
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 471 SAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A R G D+++ + GAD++ D D LH A +G L+IV+ L+ G V+ DN+
Sbjct: 20 EAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF 79
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
I+PLH A I +I+ +L GA + + F
Sbjct: 80 GITPLHLAAIRGHLEIVEVLLKHGADVNAQDKF 112
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTN------EPMFLGDVLTNAAARGMIKRLQSYLLAGI 588
L EA A Q D +R+L GA + P+ L AA G ++ ++ L G
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHL------AAQLGHLEIVEVLLKYGA 71
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
++N D+ G+TPLH A + ++E V LL D+ ++K G++A +++ D+ E+
Sbjct: 72 DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 649 LK 650
L+
Sbjct: 132 LQ 133
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N +D GLTPLH A ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
E+ G + + +A +I+E+L
Sbjct: 74 NAEDNFGITPLHLAAIRGHLEIVEVL 99
>pdb|2WLT|A Chain A, The Crystal Structure Of Helicobacter Pylori
L-Asparaginase At 1.4 A Resolution
pdb|2WT4|A Chain A, Room Temperature Crystal Structure Of Helicobacter Pylori
L- Asparaginase At 1.8 A Resolution
Length = 332
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 20/270 (7%)
Query: 151 LDSSNMCQVHWIKIANDIKEYYE--SYDGFVILHGTDTLSYTASALSFMLENLGKPVIVT 208
+ S +M + W K+A +E + G VI HGTDTL +A L+ +L + KPV++
Sbjct: 60 IGSQDMNEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESAYFLNLVLHST-KPVVLV 118
Query: 209 GSQISIFQIRSDGVHNFIGALILAGNYDIPE--VTVYFNHKLIRGNRTVKMSVKEFDAFD 266
G+ + + +DG N A+ +A N V V + + VK F
Sbjct: 119 GAMRNASSLSADGALNLYEAVSVAVNEKSANKGVLVVMDDTIFSVREVVKTHTTHVSTFK 178
Query: 267 SPNFPNLAKV--GLTIDVNMKSIFRSSTIKKFDVQSQLNL---NVGILRIYPHISNHTVR 321
+ N + V G T M+ + + +T +F + SQL V I+ + ++ +
Sbjct: 179 ALNSGAIGSVYYGKT-RYYMQPLRKHTTESEFSL-SQLKTPLPKVDIIYTHAGMTPDLFQ 236
Query: 322 SFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTSDTYEAGK 381
+ + S +GV++ G+GN + + ++ AS V+IV S+ GG + +G+
Sbjct: 237 ASLNSHAKGVVIAGVGNGNVSAG---FLKAMQEASQMGVVIVRSSRVGSGGVT----SGE 289
Query: 382 I-LSGIGVINGYDMTPEAALTKLSYVLSKS 410
I G I ++ P+ A L L+K+
Sbjct: 290 IDDKAYGFITSDNLNPQKARVLLQLALTKT 319
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 33/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A G L+IV+ L+NG V+ D+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
++PL A + +I+ +L L G ++N
Sbjct: 81 MTPLRLAALFGHLEIVEVL---------------------------------LKNGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D G TPLH A + ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 56/115 (48%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A + D +R+L GA + E L AA G ++ ++ L G ++N VD
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G+TPL A L ++E V LL D+ + G + + +A +I+E+L
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D+ G TPLH A N ++E V LL D+
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A +I+E+L
Sbjct: 74 NAVDHAGMTPLRLAALFGHLEIVEVL 99
>pdb|4PGA|A Chain A, Glutaminase-asparaginase From Pseudomonas 7a
pdb|4PGA|B Chain B, Glutaminase-asparaginase From Pseudomonas 7a
Length = 337
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 162 IKIANDIKEYYES--YDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRS 219
+K+ + E +S DG VI HGTDTL TA L+ +++ KP++V GS + +
Sbjct: 76 LKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLN-LVQKTDKPIVVVGSMRPGTAMSA 134
Query: 220 DGVHNFIGALILAGNYDI--PEVTVYFNHKLIRGNRTVKMSVK-EFDAFDSPNFPNLAKV 276
DG+ N A+ +A N D V V N + I+ R V S+ + +AF S P
Sbjct: 135 DGMLNLYNAVAVASNKDSRGKGVLVTMNDE-IQSGRDVSKSINIKTEAFKSAWGP----- 188
Query: 277 GLTIDVNMKSIFRSSTIKKFDVQSQLNL-------NVGILRIYPHISNHTVRSFMQSPME 329
L + V KS + K+ V S+ ++ V I Y ++++ ++ Q+ +
Sbjct: 189 -LGMVVEGKSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGNVTDTAYKALAQNGAK 247
Query: 330 GVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGG 372
+I G+G+ S + +LR + I+ S ++GG
Sbjct: 248 ALIHAGTGNGSVSSRVVPALQQLRKNGTQ---IIRSSHVNQGG 287
>pdb|1DJO|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJO|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Donv
Covalently Bound In The Active Site
pdb|1DJP|A Chain A, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
pdb|1DJP|B Chain B, Crystal Structure Of Pseudomonas 7a
Glutaminase-Asparaginase With The Inhibitor Don
Covalently Bound In The Active Site
Length = 330
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 23/223 (10%)
Query: 162 IKIANDIKEYYES--YDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRS 219
+K+ + E +S DG VI HGTDTL TA L+ +++ KP++V GS + +
Sbjct: 69 LKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLN-LVQKTDKPIVVVGSMRPGTAMSA 127
Query: 220 DGVHNFIGALILAGNYDI--PEVTVYFNHKLIRGNRTVKMSVK-EFDAFDSPNFPNLAKV 276
DG+ N A+ +A N D V V N + I+ R V S+ + +AF S P
Sbjct: 128 DGMLNLYNAVAVASNKDSRGKGVLVTMNDE-IQSGRDVSKSINIKTEAFKSAWGP----- 181
Query: 277 GLTIDVNMKSIFRSSTIKKFDVQSQLNL-------NVGILRIYPHISNHTVRSFMQSPME 329
L + V KS + K+ V S+ ++ V I Y ++++ ++ Q+ +
Sbjct: 182 -LGMVVEGKSYWFRLPAKRHTVNSEFDIKQISSLPQVDIAYSYGNVTDTAYKALAQNGAK 240
Query: 330 GVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGG 372
+I G+G+ S + +LR + I+ S ++GG
Sbjct: 241 ALIHAGTGNGSVSSRVVPALQQLRKNGTQ---IIRSSHVNQGG 280
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 80/184 (43%), Gaps = 12/184 (6%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV ++D +K + G ++ LH A ++++ + L+ G S +
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 532 ISPLHEAVIADQHDIIRLL--RHCGAHLTNE----PMFLGDVLTNAAARGMIKRLQSYLL 585
++PLH A +++ LL + +L N+ P+ L A G + +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL------VAQEGHVPVADVLIK 299
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI 645
G+ ++ +G TPLH A NI+ V++LL D+ + K G S + A Q DI
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDI 359
Query: 646 IELL 649
+ LL
Sbjct: 360 VTLL 363
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 2/175 (1%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
G + +K + GA ++++ LH A G ++ KY L+N V+ + D +PL
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 84
Query: 536 HEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAAR-GMIKRLQSYLLAGINLNQVD 594
H A ++++LL A+ N G + AAR G ++ + + L + +
Sbjct: 85 HCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G TPLH A + LL + KNG + + VA DI++LL
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 64/148 (43%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
LH A +G L IVK L+ G S ++ + +PLH A A ++ + L A + +
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L AA G ++ L N N + G TPLH A ++E+V LL +
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
K G + + VA + + ELL
Sbjct: 138 SQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 33/183 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A REG ++ + + A + LH A GK+ + + LE +
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
++PLH AV + DI++LL RG ++
Sbjct: 180 LTPLHVAVHHNNLDIVKLLL---------------------PRGGSPHSPAW-------- 210
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
G TPLH A N +E R LL E+ G + + +A Q +++ LL S
Sbjct: 211 ----NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 266
Query: 652 SET 654
+
Sbjct: 267 KQA 269
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 473 VREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
+EG + + +G + T LH A G + +VK+ L++ V+ +
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGY 345
Query: 533 SPLHEAVIADQHDIIRLLRHCGA 555
SPLH+A DI+ LL GA
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGA 368
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 44/207 (21%)
Query: 439 LDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEM-QNYGADISMTDFD 497
LDLA AK + L+G + ++L + A R G+ +K+ + + +D
Sbjct: 8 LDLADPSAKAV-LTGEYKKDELLE---------AARSGNEEKLMALLTPLNVNCHASDGR 57
Query: 498 RRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL 557
+ LH A ++ IV+ L++G VH +D + PLH A +++ LL
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL------- 110
Query: 558 TNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLL 617
L G +N +D TPLH A N +E LL
Sbjct: 111 --------------------------LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Query: 618 SQHVDLTIENKNGQSAIEVANQMQLND 644
S D T+ N +G+SA+++A +L +
Sbjct: 145 SHGADPTLVNCHGKSAVDMAPTPELRE 171
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 30/202 (14%)
Query: 481 IKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVI 540
++ + +GAD+ D LH ACS G ++ + L++G V+ D + +PLHEA
Sbjct: 74 VQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133
Query: 541 ADQHDIIRLLRHCGA-----------------------HLTNEPMFLGDVLTNAAARGMI 577
++ ++ LL GA LT E F G L AA +
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE--FKGHSLLQAAREADL 191
Query: 578 KRLQSYL-LAGINLNQVDSIGLTPLHAAVLN---NNIESVRYLLSQHVDLTIENKNGQSA 633
+++ L L IN Q S T LH AV + + LL + ++ +NK+ +
Sbjct: 192 AKVKKTLALEIINFKQPQSHE-TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP 250
Query: 634 IEVANQMQLNDIIELLKSSETK 655
+ VA + ND++E+L K
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAK 272
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 119/298 (39%), Gaps = 74/298 (24%)
Query: 355 ASDRNVIIVNCSQCSRGGTSDTYEAGKILSGIG-VINGYDM---TP--EAALTKLSYVLS 408
A D+ ++ + CS G YE ++L G +N D+ TP EAA V S
Sbjct: 86 AKDKGGLVPLHNACSYG----HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 409 KSELTLQQKKDIMMTNIRGELSTDAIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPAL 468
L L D + N G+ + D EL R+ L + +L
Sbjct: 142 ---LLLSHGADPTLVNCHGKSAVDMAPTPEL--------------RERLTY--EFKGHSL 182
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTA--CSVGKL-----DIVKYCLENG 521
Q+A RE D+ K+K+ + + +F + TA C+V L + + L G
Sbjct: 183 LQAA-READLAKVKKT----LALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 522 VSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQ 581
+V+ ++ ++PLH A +D++ +L GA
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGA-------------------------- 271
Query: 582 SYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ 639
+N +DS+G T LH A L ++++ R LLS D +I + G +A ++ N+
Sbjct: 272 -------KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 557 LTNEPMFLGDVLTNAAARGMIKRLQSYLLA-GINLNQVDSIGLTPLHAAVLNNNIESVRY 615
LT E + D L AA G ++L + L +N + D TPLH A N + V+
Sbjct: 19 LTGE--YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76
Query: 616 LLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
LL D+ ++K G + A ++ ELL
Sbjct: 77 LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + + + L A A G ++ ++ L G ++N VD
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
+IG TPLH A ++E LL D+ ++K G++A +++ D+ E+L+
Sbjct: 78 AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D L+ A + G L+IV+ L+NG V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A +I +L GA + + F
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF 112
Score = 35.8 bits (81), Expect = 0.083, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D GLTPL+ A + ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G + + +A + +I E+L
Sbjct: 74 NAVDAIGFTPLHLAAFIGHLEIAEVL 99
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ ++ + GAD++ D LH A +G L+I + L++G V+ +D +
Sbjct: 54 ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFG 113
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 114 KTAFDISIGNGNEDLAEILQ 133
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D+ LH A +G L+IV+ L+NG V+ N
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A AD +I+ +L GA + + F
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGADVNAQDKF 112
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 59/116 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + + L AA G ++ ++ L G ++N
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
+ G TPLH A +++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ G ++N D G TPLH A + ++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
G++ + +A +I+E+L
Sbjct: 74 NATGNTGRTPLHLAAWADHLEIVEVL 99
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 38/76 (50%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
G ++ ++ + GAD++ T R LH A L+IV+ L++G V+ +D + +
Sbjct: 58 GHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAF 117
Query: 536 HEAVIADQHDIIRLLR 551
++ D+ +L+
Sbjct: 118 DISIDNGNEDLAEILQ 133
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G ++ +K + GAD++ D + R LH A G L++VK LE G V+ +D
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAH 556
+PLH A ++++LL GA+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 571 AAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNG 630
AA G ++ ++ L AG ++N D G TPLH A N ++E V+ LL D+ ++KNG
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 631 QSAIEVANQMQLNDIIELL 649
++ + +A + ++++LL
Sbjct: 69 RTPLHLAARNGHLEVVKLL 87
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 33/119 (27%)
Query: 499 RNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
R LH A G L++VK LE G V+ +D +PLH A ++++LL
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL-------- 54
Query: 559 NEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLL 617
L AG ++N D G TPLH A N ++E V+ LL
Sbjct: 55 -------------------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G TPLH A N ++E V+ LL D+ ++KNG++ + +A + ++++LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 33/149 (22%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V+ D ++PLH A + D +I+ +L GA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA------ 71
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
++N +D+IG TPLH + ++E V LL
Sbjct: 72 ---------------------------DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA 104
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ ++K G++A +++ D+ E+L+
Sbjct: 105 DVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D +GLTPLH A +N+++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G++ + + +I+E+L
Sbjct: 74 NAIDAIGETPLHLVAMYGHLEIVEVL 99
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%)
Query: 471 SAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A R G D+++ + GAD++ D LH A L+IV+ L+NG V+ D
Sbjct: 20 EAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH + +I+ +L GA + + F
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLKHGADVNAQDKF 112
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
F A++ GD+D++K+ G D++ T R LH A G+L+I+++ L G ++ D
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
+ I+PL AV ++LL GA T
Sbjct: 71 KHHITPLLSAVYEGHVSCVKLLLSKGADKT 100
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L AA G ++ L+ LL G ++N D +TPL +AV ++ V+ LLS+ D T++
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 103
Query: 628 KNGQSAIEVANQMQLNDIIE 647
+G +A E + + +++
Sbjct: 104 PDGLTAFEATDNQAIKALLQ 123
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
F A++ GD+D++K+ G D++ T R LH A G+L+I+++ L G ++ D
Sbjct: 6 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 65
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
+ I+PL AV ++LL GA T
Sbjct: 66 KHHITPLLSAVYEGHVSCVKLLLSKGADKT 95
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 45/80 (56%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L AA G ++ L+ LL G ++N D +TPL +AV ++ V+ LLS+ D T++
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKG 98
Query: 628 KNGQSAIEVANQMQLNDIIE 647
+G +A+E + + +++
Sbjct: 99 PDGLTALEATDNQAIKALLQ 118
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLENGVSVHIRDN 529
A + GD++ +K++ + ++ D + R LH A ++ +V+Y L++G VH +D
Sbjct: 17 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 75
Query: 530 YDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGIN 589
+ PLH A +++ LL GA
Sbjct: 76 GGLVPLHNACSYGHYEVAELLVKHGA---------------------------------V 102
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+N D TPLH A E + LL D T +N++G + +++ DI +LL
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD-TDIQDLL 161
Query: 650 K 650
+
Sbjct: 162 R 162
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLENGVSVHIRDN 529
A + GD++ +K++ + ++ D + R LH A ++ +V+Y L++G VH +D
Sbjct: 19 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 77
Query: 530 YDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGIN 589
+ PLH A +++ LL GA
Sbjct: 78 GGLVPLHNACSYGHYEVAELLVKHGA---------------------------------V 104
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+N D TPLH A E + LL D T +N++G + +++ DI +LL
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD-TDIQDLL 163
Query: 650 K 650
+
Sbjct: 164 R 164
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 37/181 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLENGVSVHIRDN 529
A + GD++ +K++ + ++ D + R LH A ++ +V+Y L++G VH +D
Sbjct: 15 AAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73
Query: 530 YDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGIN 589
+ PLH A +++ LL GA
Sbjct: 74 GGLVPLHNACSYGHYEVAELLVKHGA---------------------------------V 100
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+N D TPLH A E + LL D T +N++G + +++ DI +LL
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD-TDIQDLL 159
Query: 650 K 650
+
Sbjct: 160 R 160
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + L AA RG ++ ++ L G ++N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
S G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 78 SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A G L+IV+ L++G V+ D++
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A +I+ +L GA + + F
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + G ++ ++ + +GAD++ +D R LH A +VG L+IV+ LE G V+ +D +
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L A G ++ + G ++N +D G+TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G++ + +A + +I+E+L
Sbjct: 74 NASDSWGRTPLHLAATVGHLEIVEVL 99
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 464 LYPALFQSAVREGDIDKIKEMQN--------------YGADISMT-DFDRRNILHTACSV 508
L P L +AVR G +D ++++N GA+++ T D LH A
Sbjct: 3 LTP-LMIAAVRGGGLDTGEDIENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARF 61
Query: 509 GKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVL 568
+ D K L+ G + +DN +PLH AV AD + ++L A N M G
Sbjct: 62 ARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTP 121
Query: 569 TNAAARGMIKRL-QSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVD 622
AAR I+ + + + A ++N D+ G T LH A NN E+V LL H +
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN 176
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
Query: 480 KIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAV 539
++ ++ G +++T D + LH A G+ D++ L++G + R+ PLH A
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 540 IADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLT 599
+++ L A + + L A + G + + L G ++N ++ G T
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 600 PLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
LH AV+ ++ V LL + + NK ++A++ A Q + I+ELL+
Sbjct: 188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQN--SKIMELLQ 236
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 37/96 (38%)
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+P F + KRL +G+ +N G +PLH A L+ + + LL
Sbjct: 49 DPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKH 108
Query: 620 HVDLTIENKNGQSAIEVANQMQLNDIIELLKSSETK 655
+ N + + +A Q +++ L S K
Sbjct: 109 GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG----DVLTNAAARGMIKRLQSY 583
D +PL A Q ++ L GA +P LG L+ A ++G ++
Sbjct: 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
L G+++N+ D G TPL AV N+++ V+ LL D TIE +G +++++A +
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 644 DIIELLKS 651
+ ++++S
Sbjct: 149 SVQQVIES 156
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 443 AAVAKTLHLSGRQE----LNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDR 498
AA + L+L+ R E +N + + L +A G I ++ + GAD + R
Sbjct: 11 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLLGKGR 69
Query: 499 RNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
+ L ACS G DIVK L+ GV V+ D +PL AV + +++L GA T
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129
Query: 559 NE 560
E
Sbjct: 130 IE 131
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG----DVLTNAAARGMIKRLQSY 583
D +PL A Q ++ L GA +P LG L+ A ++G ++
Sbjct: 49 DEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
L G+++N+ D G TPL AV N+++ V+ LL D TIE +G +++++A +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 644 DIIELLKS 651
+ ++++S
Sbjct: 165 SVQQVIES 172
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 443 AAVAKTLHLSGRQE----LNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDR 498
AA + L+L+ R E +N + + L +A G I ++ + GAD + R
Sbjct: 27 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLLGKGR 85
Query: 499 RNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
+ L ACS G DIVK L+ GV V+ D +PL AV + +++L GA T
Sbjct: 86 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 145
Query: 559 NE 560
E
Sbjct: 146 IE 147
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG----DVLTNAAARGMIKRLQSY 583
D +PL A Q ++ L GA +P LG L+ A ++G ++
Sbjct: 31 DEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
L G+++N+ D G TPL AV N+++ V+ LL D TIE +G +++++A +
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 644 DIIELLKS 651
+ ++++S
Sbjct: 147 SVQQVIES 154
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 443 AAVAKTLHLSGRQE----LNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDR 498
AA + L+L+ R E +N + + L +A G I ++ + GAD + R
Sbjct: 9 AAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLLGKGR 67
Query: 499 RNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
+ L ACS G DIVK L+ GV V+ D +PL AV + +++L GA T
Sbjct: 68 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 127
Query: 559 NE 560
E
Sbjct: 128 IE 129
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A G L+IV+ L++G V+ RD +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A +I+ +L GA + + F
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + L AA RG ++ ++ L G ++N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + G ++ ++ + +GAD++ D R LH A +VG L+IV+ LE G V+ +D +
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L A G ++ + G ++N +D G+TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G++ + +A + +I+E+L
Sbjct: 74 NARDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 81/206 (39%), Gaps = 40/206 (19%)
Query: 436 NNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTD 495
NN +DL ++S +++L L A R+G + + ++ YGAD S+ D
Sbjct: 52 NNRIDLV-----KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLID 106
Query: 496 FDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQH-DIIRLLRHCG 554
+ + +H A G IV Y + G V + D ++PL A D RLL
Sbjct: 107 GEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL---- 162
Query: 555 AHLT-NEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESV 613
LT N + LGD T LH AVL N +
Sbjct: 163 --LTFNVSVNLGDKYHKN---------------------------TALHWAVLAGNTTVI 193
Query: 614 RYLLSQHVDLTIENKNGQSAIEVANQ 639
LL ++ +N G+SA+++A Q
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQ 219
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 10/163 (6%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSV-HIRDNY 530
A + G ++ +E+ G D+ D + +LH A ++D+VKY + G V + +
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFL---GDVLTNAAARGMIKRLQSYLLA- 586
+ +PLH A ++ L GA +P + G + AA+ + +YL+A
Sbjct: 76 NSTPLHWATRQGHLSMVVQLMKYGA----DPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 587 GINLNQVDSIGLTPL-HAAVLNNNIESVRYLLSQHVDLTIENK 628
G +++ +D G+TPL AA ++++ R LL+ +V + + +K
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH--VDLTI 625
+ A G+ +R + + AG ++ Q D +T LH A +NN I+ V+Y +S+ VD
Sbjct: 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72
Query: 626 ENKNGQSAIEVANQMQLNDIIELLK 650
+ N Q L+ +++L+K
Sbjct: 73 GDLNSTPLHWATRQGHLSMVVQLMK 97
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 8/171 (4%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
A G + +K + +GA ++ D L AC G D V L++G SV
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAA---ARGMIKRLQSYLL 585
+ SP+HEA + + L G ++ ++ LG L A R +K+L L
Sbjct: 156 DL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL---LE 211
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEV 636
+G ++NQ +PLHA V + E L+ D +N G+ +E+
Sbjct: 212 SGADVNQGKGQD-SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 481 IKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVI 540
++ + + G +++ D + LH AC G L VK L++G V+ +PL A +
Sbjct: 75 LRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134
Query: 541 ADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTP 600
+ D + LL GA + E L + AA RG ++ + S + G N++ S TP
Sbjct: 135 SGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTP 193
Query: 601 LHAAVLNNNIESVRYLLSQHVDL 623
L+ A N V+ LL D+
Sbjct: 194 LYLACENQQRACVKKLLESGADV 216
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLH 536
D I+ + N +++D+ + +H A G ++ + G +V+I +SPLH
Sbjct: 41 DFPGIRLLSNPLMGDAVSDW---SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLH 97
Query: 537 EAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSI 596
EA + +++L GA + L NA G + L G ++ Q +S
Sbjct: 98 EACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QPESD 156
Query: 597 GLTPLHAAVLNNNIESVRYLLS 618
+P+H A ++E V L++
Sbjct: 157 LASPIHEAARRGHVECVNSLIA 178
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 565 GDVLT--NAAARGMIKRLQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
GD L+ AA+G + +L+ +L G NL N+ D G TPL A IE+VR+LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
D I K +SA+ +A+ DI+ LL
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLL 88
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 502 LHTACSVGKLDIVKYCLENGVS-VHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNE 560
+H + G+LD +K L G + V+ D +PL A + + +R L GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA----D 61
Query: 561 PMFLG----DVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYL 616
P L L+ A+ G + L +++N D G TPL AV N+++ V L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 617 LSQHVDLTIENKNGQSAIEVA--------NQMQLNDIIELLKSS 652
L++ DLT E +G + +++A Q+ N I++L +S+
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 466 PALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVH 525
P ++ SA G+I+ ++ + +GAD + +R + L A + G DIV LE V ++
Sbjct: 39 PLIWASAF--GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNE 560
I D +PL AV + + L GA LT E
Sbjct: 97 IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTE 131
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVD 594
L EA A Q D +R+L GA + L AA RG ++ ++ L G ++N D
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 595 SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
G TPLH A ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 78 IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A G L+IV+ L++G V+ D +
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A +I+ +L GA + + F
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGADVNAQDKF 112
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + G ++ ++ + +GAD++ +D R LH A +VG L+IV+ LE G V+ +D +
Sbjct: 54 AAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFG 113
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 114 KTAFDISIDNGNEDLAEILQ 133
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 43/86 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L A G ++ + G ++N +D G+TPLH A ++E V LL D+
Sbjct: 14 LGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ G++ + +A + +I+E+L
Sbjct: 74 NASDIWGRTPLHLAATVGHLEIVEVL 99
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 565 GDVLT--NAAARGMIKRLQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
GD L+ AA+G + +L+ +L G NL N+ D G TPL A IE+VR+LL
Sbjct: 1 GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
D I K +SA+ +A+ DI+ LL
Sbjct: 61 DPHILAKERESALSLASTGGYTDIVGLL 88
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 502 LHTACSVGKLDIVKYCLENGVS-VHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNE 560
+H + G+LD +K L G + V+ D +PL A + + +R L GA +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA----D 61
Query: 561 PMFLG----DVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYL 616
P L L+ A+ G + L +++N D G TPL AV N+++ V L
Sbjct: 62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 617 LSQHVDLTIENKNGQSAIEVA--------NQMQLNDIIELLKSS 652
L++ DLT E +G + +++A Q+ N I++L +S+
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 466 PALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVH 525
P ++ SA G+I+ ++ + +GAD + +R + L A + G DIV LE V ++
Sbjct: 39 PLIWASAF--GEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN 96
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNE 560
I D +PL AV + + L GA LT E
Sbjct: 97 IYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTE 131
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
A G ++ + + G +++ D + LH AC G L VK L++G V+
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGI 588
+PL A ++ D + LL GA + E L + AA RG ++ + S + G
Sbjct: 67 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGG 125
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
N++ S TPL+ A N V+ LL D+
Sbjct: 126 NIDHKISHLGTPLYLACENQQRACVKKLLESGADV 160
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 72/171 (42%), Gaps = 8/171 (4%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
A G + +K + +GA ++ D L AC G D V L++G SV
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 99
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAA---ARGMIKRLQSYLL 585
+ SP+HEA + + L G ++ ++ LG L A R +K+L L
Sbjct: 100 DL-ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL---LE 155
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEV 636
+G ++NQ +PLHA + E L+ D +N G+ +E+
Sbjct: 156 SGADVNQGKGQD-SPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 471 SAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A R G D+++ + GAD++ D LH A L+IV+ L++G V+ DN
Sbjct: 20 EAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND 79
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMF 563
+PLH A + +I+ +L GA + + F
Sbjct: 80 GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKF 112
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 12/120 (10%)
Query: 537 EAVIADQHDIIRLLRHCGAHLT------NEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
EA A Q D +R+L GA + N P+ L AA ++ ++ L G ++
Sbjct: 20 EAARAGQDDEVRILMANGADVNANDRKGNTPLHL------AADYDHLEIVEVLLKHGADV 73
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N D+ G TPLH A L ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A +++E V LL D+
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
+ +G + + +A +I+E+L
Sbjct: 74 NAHDNDGSTPLHLAALFGHLEIVEVL 99
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 468 LFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIR 527
L A +GDI ++ + G+D ++ D LH AC+ G L +V+ L++ V+
Sbjct: 13 LLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT 72
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGA 555
+ SPLH+A DI++LL GA
Sbjct: 73 GYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
T+ +LH A G + V+Y L+NG +++D+ +PLHEA ++ LL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 553 CGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPL 601
A L N + D L +AA G + ++ L G + N V+ GL P+
Sbjct: 65 HKA-LVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPV 113
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%)
Query: 571 AAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNG 630
A+ +G I ++ L G + N D G TPLH A + +++ V LL +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 631 QSAIEVANQMQLNDIIELLKS 651
S + A + DI++LL S
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLS 97
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 31/67 (46%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
A G + ++ + + A ++ T + + LH A G +DIVK L G S + +
Sbjct: 47 LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Query: 529 NYDISPL 535
+ + P+
Sbjct: 107 IFGLRPV 113
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
+A + G +++K++ + GAD++ D LH A G +IVK L G V+ R
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGA 555
+P H A H+I++LL GA
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDAKGA 99
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 46/84 (54%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L NAA G + ++ L G ++N G TPLH A N + E V+ LL++ D+ +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 628 KNGQSAIEVANQMQLNDIIELLKS 651
K+G + +A + ++I++LL +
Sbjct: 73 KDGNTPEHLAKKNGHHEIVKLLDA 96
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G TPLH A N + E V+ LLS+ D+ +K+G + + +A + +I++LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 26/59 (44%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
D LH A G + VK L G V+ R +PLH A +I++LL GA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 36/180 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GA + TD+ + LH A G + L GVS R D
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 532 ISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+PLH A +I+ LL+H G ++
Sbjct: 68 RTPLHMAASEGHANIVEVLLKH----------------------------------GADV 93
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N D + +T LH A +N+ E V L+ D+ ++K ++A +++ D+ E+L+
Sbjct: 94 NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 535 LHEAVIADQHDIIRLLRHCGAHLTNEPMFLG-DVLTNAAARGMIKRLQSYLLAGINLNQV 593
L EA A Q D +R+L GA T + +LG L AA G + L AG++ +
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 594 DSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ TPLH A + V LL D+ ++ +A+ A + +++ELL
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 554 GAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESV 613
G+H+ ++ LG L AA G ++ + G ++ D G TPLH A N ++E V
Sbjct: 17 GSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVV 73
Query: 614 RYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
+ LL D+ ++K G++A +++ D+ E+L+
Sbjct: 74 KLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D + LH A G L++VK LE G V +D +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 91 KTAFDISIDNGNEDLAEILQ 110
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V +D +PLH A ++++LL GA + +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87
Query: 562 MF 563
F
Sbjct: 88 KF 89
>pdb|1AGX|A Chain A, Refined Crystal Structure Of Acinetobacter
Glutaminasificans Glutaminase-Asparaginase
Length = 331
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 149/352 (42%), Gaps = 49/352 (13%)
Query: 74 ESKVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
++ V+++ TGGTI GA A S+ T + P+ D + +P+
Sbjct: 1 KNNVVIVATGGTIA------GAGASSTNSATYSAAKVPV------------DALIKAVPQ 42
Query: 134 VKDTRRVLYKVVEYTPL-LDSSNMCQVHWIKIANDIKEYYE--SYDGFVILHGTDTLSYT 190
V D L + L + S ++ + +A + + + S +G VI HGTDT+ T
Sbjct: 43 VND----LANITGIQALQVASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEET 98
Query: 191 ASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPE--VTVYFNHKL 248
A L+ ++ KP+++ GS + +DG N A+ LA + + V V N +
Sbjct: 99 AFFLNLVVHT-DKPIVLVGSMRPSTALSADGPLNLYSAVALASSNEAKNKGVMVLMNDSI 157
Query: 249 IRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLN--- 305
K AF S +G ++ K + S++KK S+ N+
Sbjct: 158 FAARDVTKGINIHTHAFVS----QWGALGTLVE--GKPYWFRSSVKKHTNNSEFNIEKIQ 211
Query: 306 ----VGILRIYP--HISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELR-LASDR 358
G+ +Y ++ ++F ++ ++ +I G+G+ + L+ E+R L ++
Sbjct: 212 GDALPGVQIVYGSDNMMPDAYQAFAKAGVKAIIHAGTGNGSMANY---LVPEVRKLHDEQ 268
Query: 359 NVIIVNCSQCSRGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKS 410
+ IV S+ ++G E G I +D+ P+ A ++ L+K+
Sbjct: 269 GLQIVRSSRVAQGFVLRNAEQPD--DKYGWIAAHDLNPQKARLLMALALTKT 318
>pdb|1ZCF|A Chain A, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|B Chain B, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|C Chain C, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|D Chain D, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|E Chain E, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|F Chain F, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|G Chain G, L-Asparaginase From Erwinia Carotovora
pdb|1ZCF|H Chain H, L-Asparaginase From Erwinia Carotovora
pdb|2GVN|A Chain A, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|B Chain B, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|C Chain C, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|D Chain D, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|E Chain E, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|F Chain F, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|G Chain G, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2GVN|H Chain H, L-asparaginase From Erwinia Carotovora In Complex With
Aspartic Acid
pdb|2HLN|A Chain A, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|B Chain B, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|E Chain E, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|F Chain F, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|C Chain C, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|D Chain D, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|G Chain G, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|H Chain H, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|I Chain I, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|J Chain J, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|K Chain K, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
pdb|2HLN|L Chain L, L-Asparaginase From Erwinia Carotovora In Complex With
Glutamic Acid
Length = 327
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 8/200 (4%)
Query: 176 DGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAG-- 233
DG VI HGTDTL + L+ +++ KPV+ + I +DG N GA+ +A
Sbjct: 87 DGVVITHGTDTLDESPYFLNLTVKS-DKPVVFVAAMRPATAISADGPMNLYGAVKVAADK 145
Query: 234 NYDIPEVTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAK-VGLTIDVNMKSIFRSST 292
N V V N ++ K + D F +P L +G I + +T
Sbjct: 146 NSRGRGVLVVLNDRIGSARFISKTNASTLDTFKAPEEGYLGVIIGDKIYYQTRLDKVHTT 205
Query: 293 IKKFDVQSQLNL-NVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDE 351
FDV + L V I+ Y + + ++ ++G++ G+G+ S R D
Sbjct: 206 RSVFDVTNVDKLPAVDIIYGYQDDPEYMYDASIKHGVKGIVYAGMGAGSV-SKRGDA--G 262
Query: 352 LRLASDRNVIIVNCSQCSRG 371
+R A + +++V S+ G
Sbjct: 263 IRKAESKGIVVVRSSRTGSG 282
>pdb|2JK0|A Chain A, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|B Chain B, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|C Chain C, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|D Chain D, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|E Chain E, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|F Chain F, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|G Chain G, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
pdb|2JK0|H Chain H, Structural And Functional Insights Into Erwinia Carotovora
L-Asparaginase
Length = 325
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 10/227 (4%)
Query: 151 LDSSNMCQVHWIKIANDIKEYY--ESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVT 208
+ S NM + ++ + E DG VI HGTDTL + L+ +++ KPV+
Sbjct: 58 IGSENMTSDVLLTLSKRVNELLARSDVDGVVITHGTDTLDESPYFLNLTVKS-DKPVVFV 116
Query: 209 GSQISIFQIRSDGVHNFIGALILAG--NYDIPEVTVYFNHKLIRGNRTVKMSVKEFDAFD 266
+ I +DG N GA+ +A N V V N ++ K + D F
Sbjct: 117 AAMRPATAISADGPMNLYGAVKVAADKNSRGRGVLVVLNDRIGSARFISKTNASTLDTFK 176
Query: 267 SPNFPNLAK-VGLTIDVNMKSIFRSSTIKKFDVQSQLNL-NVGILRIYPHISNHTVRSFM 324
+P L +G I + +T FDV + L V I+ Y + + +
Sbjct: 177 APEEGYLGVIIGDKIYYQTRLDKVHTTRSVFDVTNVDKLPAVDIIYGYQDDPEYMYDASI 236
Query: 325 QSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRG 371
+ ++G++ G+G+ S R D +R A + +++V S+ G
Sbjct: 237 KHGVKGIVYAGMGAGSV-SKRGDA--GIRKAESKGIVVVRSSRTGSG 280
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++N D G TPLH A ++E V LL D+
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 61
Query: 624 TIENKNGQSAIEVANQMQLNDIIELLKSS 652
++K G++A +++ D+ E+L+ +
Sbjct: 62 NAQDKFGKTAFDISIDNGNEDLAEILQKA 90
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D D LH A G L+IV+ L+ G V+ +D +
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 69 KTAFDISIDNGNEDLAEILQ 88
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V+ +D +PLH A +I+ +L GA + +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 562 MF 563
F
Sbjct: 66 KF 67
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
TD LH A + + D K LE +I+DN +PLH AV AD + ++L
Sbjct: 53 TDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 554 GA-------HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
A H P+ L L A GM L+ + + ++N VD +G + LH
Sbjct: 113 RATDLDARMHDGTTPLILAARL---AVEGM---LEDLINSHADVNAVDDLGKSALH 162
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 580 LQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVAN 638
+ ++ G +L NQ D G T LH A + ++ + LL D I++ G++ + A
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 639 QMQLNDIIELL---KSSETKSKVH 659
+ ++L ++++ +++H
Sbjct: 99 SADAQGVFQILIRNRATDLDARMH 122
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 564 LGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
LG L AA G ++ + G ++ D G TPLH A N ++E V+ LL D+
Sbjct: 6 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 65
Query: 624 TIENKNGQSAIEVANQMQLNDIIELLK 650
++K G++A +++ D+ E+L+
Sbjct: 66 NAQDKFGKTAFDISIDNGNEDLAEILQ 92
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D + LH A G L++VK LE G V+ +D +
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 73 KTAFDISIDNGNEDLAEILQ 92
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V +D +PLH A ++++LL GA + +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQD 69
Query: 562 MF 563
F
Sbjct: 70 KF 71
>pdb|1O7J|A Chain A, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|B Chain B, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|C Chain C, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
pdb|1O7J|D Chain D, Atomic Resolution Structure Of Erwinia Chrysanthemi
L-Asparaginase
Length = 327
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 22/233 (9%)
Query: 151 LDSSNMCQVHWIKIANDIKEYY--ESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVT 208
+ S NM +K++ + E + DG VI HGTDT+ +A L +++ KPV+
Sbjct: 60 MASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKS-DKPVVFV 118
Query: 209 GSQISIFQIRSDGVHNFIGALILAGNYDI--PEVTVYFNHKLIRGNRTVKMSVKEFDAFD 266
+ I +DG N + A+ +AG+ V V N ++ K + D F
Sbjct: 119 AAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVINDRIGSARYITKTNASTLDTFR 178
Query: 267 SPNFPNLAKVGLTIDVNMKSIFRSSTIKK-------FDVQSQLNL-NVGILRIYPHISNH 318
+ L G+ I I+ + I K FDV+ +L V IL Y +
Sbjct: 179 ANEEGYL---GVIIG---NRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEY 232
Query: 319 TVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRG 371
+ +Q ++G++ G+G+ S R I +R A ++ V+++ ++ G
Sbjct: 233 LYDAAIQHGVKGIVYAGMGAGSV-SVRG--IAGMRKALEKGVVVMRSTRTGNG 282
>pdb|1HFJ|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFJ|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Sulfate
pdb|1HFK|A Chain A, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HFK|C Chain C, Asparaginase From Erwinia Chrysanthemi, Hexagonal Form
With Weak Sulfate
pdb|1HG0|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG0|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And Succinic Acid
pdb|1HG1|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1HG1|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And D-Aspartate
pdb|1JSL|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSL|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-asparaginase
Complexed With 6-hydroxy-d-norleucine
pdb|1JSR|A Chain A, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|B Chain B, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|C Chain C, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1JSR|D Chain D, Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase
Complexed With 6-Hydroxy-L-Norleucine
pdb|1HFW|A Chain A, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|B Chain B, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|C Chain C, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
pdb|1HFW|D Chain D, X-Ray Structure Of The Complex Between Erwinia
Chrysanthemi L-Asparaginase And L-Glutamate
Length = 327
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 22/233 (9%)
Query: 151 LDSSNMCQVHWIKIANDIKEYY--ESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVT 208
+ S NM +K++ + E + DG VI HGTDT+ +A L +++ KPV+
Sbjct: 60 MASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKS-DKPVVFV 118
Query: 209 GSQISIFQIRSDGVHNFIGALILAGNYDI--PEVTVYFNHKLIRGNRTVKMSVKEFDAFD 266
+ I +DG N + A+ +AG+ V V N ++ K + D F
Sbjct: 119 AAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVINDRIGSARYITKTNASTLDTFR 178
Query: 267 SPNFPNLAKVGLTIDVNMKSIFRSSTIKK-------FDVQSQLNL-NVGILRIYPHISNH 318
+ L G+ I I+ + I K FDV+ +L V IL Y +
Sbjct: 179 ANEEGYL---GVIIG---NRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEY 232
Query: 319 TVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRG 371
+ +Q ++G++ G+G+ S R I +R A ++ V+++ ++ G
Sbjct: 233 LYDAAIQHGVKGIVYAGMGAGSV-SVRG--IAGMRKALEKGVVVMRSTRTGNG 282
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
TD LH A + D K LE +I+DN +PLH AV AD + ++L
Sbjct: 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 112
Query: 554 GA-------HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
A H P+ L L A GM L+ + + ++N VD +G + LH
Sbjct: 113 RATDLDARMHDGTTPLILAARL---AVEGM---LEDLINSHADVNAVDDLGKSALH 162
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 580 LQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVAN 638
+ ++ G +L NQ D G T LH A + ++ + LL D I++ G++ + A
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98
Query: 639 QMQLNDIIELL---KSSETKSKVH 659
+ ++L ++++ +++H
Sbjct: 99 SADAQGVFQILIRNRATDLDARMH 122
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 468 LFQSAVREGDIDKIKEMQNYGADISMTDFDR-RNILHTACSVGKLDIVKYCLENGVSVHI 526
L AV+ D+D ++++ GA+++ + + LH A + + DIV+ L +G +
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG-DVLTNAAARGMIKRLQSYLL 585
R +P A IA +++L GA + NE F G AA G +K L+
Sbjct: 88 RKKNGATPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 586 AGINLN----------QVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
G N+N ++ G T L A ++E ++ LL +
Sbjct: 147 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
F A G + +K + GAD++ DF A GK+ +K+ + G +V++R
Sbjct: 96 FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 529 NYD----------ISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGDVLTNAAARGMI 577
+ L +A ++++ LL GA + + N +I
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV--------NACDNMGRNALI 207
Query: 578 KRLQS----------YLLA--GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ-HVDLT 624
L S +LL G ++N G TPL AV ++ V+ LL Q H+++
Sbjct: 208 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 267
Query: 625 IENKNGQSAIEVANQMQLNDIIELL 649
+ +G++A+ +A +++L I ELL
Sbjct: 268 DTDSDGKTALLLAVELKLKKIAELL 292
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 580 LQSYLLAGINLN-QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
+Q L G N+N Q + G TPLH AV + + V LL D + KNG + +A
Sbjct: 41 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA 99
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
TD LH A + D K LE +I+DN +PLH AV AD + ++L
Sbjct: 54 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 113
Query: 554 GA-------HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
A H P+ L L A GM++ L + + ++N VD +G + LH
Sbjct: 114 RATDLDARMHDGTTPLILAARL---AVEGMLEDL---INSHADVNAVDDLGKSALH 163
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 580 LQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVAN 638
+ ++ G +L NQ D G T LH A + ++ + LL D I++ G++ + A
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
Query: 639 QMQLNDIIELL---KSSETKSKVH 659
+ ++L ++++ +++H
Sbjct: 100 SADAQGVFQILIRNRATDLDARMH 123
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
TD LH A + D K LE +I+DN +PLH AV AD + ++L
Sbjct: 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 554 GA-------HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
A H P+ L L A GM L+ + + ++N VD +G + LH
Sbjct: 81 RATDLDARMHDGTTPLILAARL---AVEGM---LEDLINSHADVNAVDDLGKSALH 130
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 580 LQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVAN 638
+ ++ G +L NQ D G T LH A + ++ + LL D I++ G++ + A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
Query: 639 QMQLNDIIELL---KSSETKSKVH 659
+ ++L ++++ +++H
Sbjct: 67 SADAQGVFQILIRNRATDLDARMH 90
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 468 LFQSAVREGDIDKIKEMQNYGADISMTDFDR-RNILHTACSVGKLDIVKYCLENGVSVHI 526
L AV+ D+D ++++ GA+++ + + LH A + + DIV+ L +G +
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG-DVLTNAAARGMIKRLQSYLL 585
R +P A IA +++L GA + NE F G AA G +K L+
Sbjct: 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 586 AGINLN----------QVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
G N+N ++ G T L A ++E ++ LL +
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 32/205 (15%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
F A G + +K + GAD++ DF A GK+ +K+ + G +V++R
Sbjct: 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 529 NYD----------ISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGDVLTNAAARGMI 577
+ L +A ++++ LL GA + + N +I
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV--------NACDNMGRNALI 187
Query: 578 KRLQS----------YLLA--GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ-HVDLT 624
L S +LL G ++N G TPL AV ++ V+ LL Q H+++
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN 247
Query: 625 IENKNGQSAIEVANQMQLNDIIELL 649
+ +G++A+ +A +++L I ELL
Sbjct: 248 DTDSDGKTALLLAVELKLKKIAELL 272
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 580 LQSYLLAGINLN-QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
+Q L G N+N Q + G TPLH AV + + V LL D + KNG + +A
Sbjct: 21 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 13/116 (11%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
TD LH A + D K LE I+DN +PLH AV AD + ++L
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRN 77
Query: 554 GA-------HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
A H P+ L L A GM++ L + + ++N VD +G + LH
Sbjct: 78 RATDLDARMHDGTTPLILAARL---ALEGMLEDL---INSHADVNAVDDLGKSALH 127
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 580 LQSYLLAGINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVAN 638
+ ++ G +L NQ D G T LH A + ++ + LL D I++ G++ + A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV 63
Query: 639 QMQLNDIIELL---KSSETKSKVH 659
+ ++L ++++ +++H
Sbjct: 64 SADAQGVFQILLRNRATDLDARMH 87
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 567 VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLL-SQHVDLTI 625
L NA G + ++ + G+N+N DS G TPLH A NN++ ++L+ S +
Sbjct: 73 ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 626 ENKNGQSAIEVANQMQ 641
+ Q+A + +M+
Sbjct: 133 TYSDMQTAADKCEEME 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
AL + EG+ D ++ + D S+ + + LH A G +IVK+ ++ GV+V+
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGA 555
D+ +PLH A + + + L GA
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 423 TNIRGELSTDAIHNNELDLAAAVAKTLHLSGRQELNKLKKILY----PAL--------FQ 470
TN+R S H + +A L S E + +++I+Y P+L
Sbjct: 17 TNLRKTGSERIAHGMRVKFNP-LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH 75
Query: 471 SAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSV 524
+AV G + +K + +G +++ D D LH A S + + K+ +E+G +V
Sbjct: 76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 567 VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLL-SQHVDLTI 625
L NA G + ++ + G+N+N DS G TPLH A NN++ ++L+ S +
Sbjct: 73 ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Query: 626 ENKNGQSAIEVANQMQ 641
+ Q+A + +M+
Sbjct: 133 TYSDMQTAADKCEEME 148
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
AL + EG+ D ++ + D S+ + + LH A G +IVK+ ++ GV+V+
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGA 555
D+ +PLH A + + + L GA
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 21/119 (17%)
Query: 423 TNIRGELSTDAIHN-----NELDLAAAVAKTLHLSGRQELNKLKKILY----PAL----- 468
TN+R S H N L LA + +L E + +++I+Y P+L
Sbjct: 15 TNLRKTGSERIAHGMRVKFNPLPLALLLDSSLE----GEFDLVQRIIYEVDDPSLPNDEG 70
Query: 469 ---FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSV 524
+AV G + +K + +G +++ D D LH A S + + K+ +E+G +V
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L A A + + L G N+NQ DS G PLH A + + L + DL +
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 628 KNGQSAIEVANQMQLNDIIELLKSSETK 655
G+ + +A + DI+ LL+ ++ +
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 484 MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQ 543
+QN GA+++ D R LH A +G + L+ G + RD+ PL A+
Sbjct: 255 LQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 544 HDIIRLLR 551
DI+ LLR
Sbjct: 314 ADIVTLLR 321
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 464 LYPA--LFQSAVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLE 519
L+P LF+++ + + + +GAD++ + + N L A + L ++ L+
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 520 NGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL 557
NG +V+ D+ PLH A I + L GA L
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLENGVSVHI 526
F A G+++ +K + + + + + LH A ++ ++ +ENG SV I
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCG 554
+D ++ PLH A +I LL CG
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELL--CG 161
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDIS-PLHEAVIADQHDIIRLL--RHCGAHLT 558
LH AC + V+ L + S+ ++ + D PLH +V H+I L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 559 NEPMFLG----DVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVR 614
+ P G + + ++K L L +LN++ + G+T LH AV E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 615 YLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+L+ + I++K Q + A + +IELL
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLENGVSVHI 526
F A G+++ +K + + + + + LH A ++ ++ +ENG SV I
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCG 554
+D ++ PLH A +I LL CG
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELL--CG 161
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDIS-PLHEAVIADQHDIIRLL--RHCGAHLT 558
LH AC + V+ L + S+ ++ + D PLH +V H+I L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 559 NEPMFLG----DVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVR 614
+ P G + + ++K L L +LN++ + G+T LH AV E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 615 YLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+L+ + I++K Q + A + +IELL
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLENGVSVHI 526
F A G+++ +K + + + + + LH A ++ ++ +ENG SV I
Sbjct: 76 FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCG 554
+D ++ PLH A +I LL CG
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELL--CG 161
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDIS-PLHEAVIADQHDIIRLL--RHCGAHLT 558
LH AC + V+ L + S+ ++ + D PLH +V H+I L + +L
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 559 NEPMFLG----DVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVR 614
+ P G + + ++K L L +LN++ + G+T LH AV E +
Sbjct: 66 DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 615 YLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+L+ + I++K Q + A + +IELL
Sbjct: 125 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L A A + + L G N+NQ DS G PLH A + + L + DL +
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 628 KNGQSAIEVANQMQLNDIIELLKSSETK 655
G+ + +A + DI+ LL+ ++ +
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 484 MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQ 543
+QN GA+++ D R LH A +G + L+ G + RD+ PL A+
Sbjct: 255 LQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 544 HDIIRLLR 551
DI+ LLR
Sbjct: 314 ADIVTLLR 321
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 464 LYPA--LFQSAVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLE 519
L+P LF+++ + + + +GAD++ + + N L A + L ++ L+
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 520 NGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL 557
NG +V+ D+ PLH A I + L GA L
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ-HVDLTIE 626
L AA RG + L+ L + +N +D G T L+ A + + V L +Q +++L +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 627 NKNGQSAIEVANQMQLNDIIELL 649
NK G +A+ A DI++LL
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLL 159
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 50/138 (36%), Gaps = 32/138 (23%)
Query: 500 NILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTN 559
N LH A G L ++ CL+N V V+ D + L+ A DI+ L
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXL--------- 125
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ I LNQ + +G T LHAA + V+ LL++
Sbjct: 126 -----------------------FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162
Query: 620 HVDLTIENKNGQSAIEVA 637
+ N + A + A
Sbjct: 163 GARTDLRNIEKKLAFDXA 180
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCL-ENGVSVHIR 527
A + G++ ++E + ++ D L+ AC G DIV+ + + ++ +
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQ 136
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAH--LTN-EPMFLGDVLTNAAARGMIKRLQ 581
+ + LH A DI++LL GA L N E D TNAA ++K+ Q
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQ 193
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L A A + + L G N+NQ DS G PLH A + + L + DL +
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 628 KNGQSAIEVANQMQLNDIIELLKSSETK 655
G+ + +A + DI+ LL+ ++ +
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMR 326
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 484 MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQ 543
+QN GA+++ D R LH A +G + L+ G + RD+ PL A+
Sbjct: 255 LQN-GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313
Query: 544 HDIIRLLR 551
DI+ LLR
Sbjct: 314 ADIVTLLR 321
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 464 LYPA--LFQSAVREGDIDKIKEMQNYGADISMTDFDRRNI--LHTACSVGKLDIVKYCLE 519
L+P LF+++ + + + +GAD++ + + N L A + L ++ L+
Sbjct: 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ 256
Query: 520 NGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL 557
NG +V+ D+ PLH A I + L GA L
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADL 294
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
NL++ G T LH L +N E ++ LL + I N++G++ +++A +++ EL
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256
Query: 649 LK---SSETKSKVH 659
L S S VH
Sbjct: 257 LTQALSGRFNSHVH 270
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 509 GKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVL 568
G I L+ G S +++D SP+H+A D +++L GA + N P G +
Sbjct: 52 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALP 110
Query: 569 TNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
+ A + + S+L A +L++ D+ GLTPL A+
Sbjct: 111 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL 147
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 470 QSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
A R G +D +K + +GAD+++ D +H A G +V + L +H RD
Sbjct: 79 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDA 137
Query: 530 YDISPLHEAVIADQHDIIRLLR 551
++PL A+ D++ +L+
Sbjct: 138 RGLTPLELALQRGAQDLVDILQ 159
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 483 EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIAD 542
E+ GA ++ D + +H A G LD +K +E+G V++ D P+H AV
Sbjct: 59 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 118
Query: 543 QHDIIRLL 550
++ L
Sbjct: 119 HTAVVSFL 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 570 NAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKN 629
+AA G + L+ + G ++N +DS G P+H A+ + SV L+ DL + +
Sbjct: 82 DAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH-SSVVSFLAPESDLHHRDAS 140
Query: 630 GQSAIEVANQMQLNDIIELLK 650
G + +E+A Q +++++L+
Sbjct: 141 GLTPLELARQRGAQNLMDILQ 161
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 483 EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIAD 542
E+ GA ++ D + +H A G LD +K +E+G V+ D+ P+H A+
Sbjct: 61 ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 120
Query: 543 QHDIIRLL 550
++ L
Sbjct: 121 HSSVVSFL 128
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 470 QSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
A R G +D +K + +GAD++ D +H A G +V + L +H RD
Sbjct: 81 HDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF-LAPESDLHHRDA 139
Query: 530 YDISPLHEAVIADQHDIIRLLR 551
++PL A +++ +L+
Sbjct: 140 SGLTPLELARQRGAQNLMDILQ 161
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 570 NAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKN 629
+AA G + L+ + G ++N +DS G P+H A+ + SV L+ DL + +
Sbjct: 80 DAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH-SSVVSFLAPESDLHHRDAS 138
Query: 630 GQSAIEVANQMQLNDIIELLK 650
G + +E+A Q +++++L+
Sbjct: 139 GLTPLELARQRGAQNLMDILQ 159
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 483 EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIAD 542
E+ GA ++ D + +H A G LD +K +E+G V+ D+ P+H A+
Sbjct: 59 ELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREG 118
Query: 543 QHDIIRLL 550
++ L
Sbjct: 119 HSSVVSFL 126
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 470 QSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
A R G +D +K + +GAD++ D +H A G +V + L +H RD
Sbjct: 79 HDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSF-LAPESDLHHRDA 137
Query: 530 YDISPLHEAVIADQHDIIRLLR 551
++PL A +++ +L+
Sbjct: 138 SGLTPLELARQRGAQNLMDILQ 159
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 509 GKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVL 568
G I L+ G S +++D SP+H+A D +++L GA + N P G +
Sbjct: 46 GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALP 104
Query: 569 TNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
+ A + + S+L A +L++ D+ GLTPL A+
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELAL 141
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 470 QSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
A R G +D +K + +GAD+++ D +H A G +V + L +H RD
Sbjct: 73 HDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF-LAAESDLHRRDA 131
Query: 530 YDISPLHEAVIADQHDIIRLLR 551
++PL A+ D++ +L+
Sbjct: 132 RGLTPLELALQRGAQDLVDILQ 153
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 483 EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIAD 542
E+ GA ++ D + +H A G LD +K +E+G V++ D P+H AV
Sbjct: 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112
Query: 543 QHDIIRLL 550
++ L
Sbjct: 113 HTAVVSFL 120
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 20/175 (11%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
G+ ++++ GA + + + LH AC V L+ S H RD D
Sbjct: 56 GEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASDT--- 111
Query: 536 HEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDS 595
+ D H A + ++P + R RLQ L +
Sbjct: 112 ---YLTQSQDCTPDTSHAPAAVDSQP----NPENEEEPRDEDWRLQ--------LEAENY 156
Query: 596 IGLTPLHAAVLNNNIESVRYLLSQHVDLT-IENKNGQSAIEVANQMQLNDIIELL 649
G TPLH AV++ + E VR L DL E G++ + +A + Q ++ELL
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 528 DNYD-ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL- 585
+NYD +PLH AVI +++RLLR GA L G + A + LL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYL 616
AG + G TPL +A+L N R L
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFD-RRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
AV D + ++ +++ GAD++ + R LH A +++ L+ G R
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLT 569
+PL A++ + RLLR AH EP GD L+
Sbjct: 225 GRTPLGSALLRPNPILARLLR---AHGAPEPEDGGDKLS 260
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 20/175 (11%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
G+ ++++ GA + + + LH AC V L+ S H RD D
Sbjct: 56 GEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASDT--- 111
Query: 536 HEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDS 595
+ D H A + ++P + R RLQ L +
Sbjct: 112 ---YLTQSQDCTPDTSHAPAAVDSQP----NPENEEEPRDEDWRLQ--------LEAENY 156
Query: 596 IGLTPLHAAVLNNNIESVRYLLSQHVDLT-IENKNGQSAIEVANQMQLNDIIELL 649
G TPLH AV++ + E VR L DL E G++ + +A + Q ++ELL
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 528 DNYD-ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL- 585
+NYD +PLH AVI +++RLLR GA L G + A + LL
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYL 616
AG + G TPL +A+L N R L
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLL 244
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFD-RRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
AV D + ++ +++ GAD++ + R LH A +++ L+ G R
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLT 569
+PL A++ + RLLR AH EP GD L+
Sbjct: 225 GRTPLGSALLRPNPILARLLR---AHGAPEPEDGGDKLS 260
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 549 LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNN 608
LLR L + F V+ +AA G + LQ+ L ++N D+ G PLH A
Sbjct: 57 LLRGANPDLKDRTGFA--VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 609 NIESVRYLLSQHVDLTIENKN--GQSAIEVANQMQLNDIIELLKSS 652
++ V +L+ +H + ++N G +A ++A N+++ L++++
Sbjct: 115 HLRVVEFLV-KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 32.3 bits (72), Expect = 0.94, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVS-VH 525
A+ A R G +D ++ + + AD+++ D + LH A G L +V++ +++ S V
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
R++ + A + +++++ L++ GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
GA+ + D ++H A G LD ++ LE V+I DN PLH A ++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 548 R-LLRHCGAHL 557
L++H +++
Sbjct: 120 EFLVKHTASNV 130
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
G+ L +AAARG +++L S L +N+N + G T L L N E R LL + +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPD 64
Query: 625 IENKNGQSAIEVANQMQLNDIIELL 649
++++ G + I A + D ++ L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTL 89
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 36.2 bits (82), Expect = 0.063, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 549 LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNN 608
LLR L + F V+ +AA G + LQ+ L ++N D+ G PLH A
Sbjct: 57 LLRGANPDLKDRTGFA--VIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEG 114
Query: 609 NIESVRYLLSQHVDLTIENKN--GQSAIEVANQMQLNDIIELLKSS 652
++ V +L+ +H + ++N G +A ++A N+++ L++++
Sbjct: 115 HLRVVEFLV-KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
GA+ + D ++H A G LD ++ LEN V+I DN PLH A ++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 548 R-LLRHCGAHL 557
L++H +++
Sbjct: 120 EFLVKHTASNV 130
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVS-VH 525
A+ A R G +D ++ + AD+++ D + LH A G L +V++ +++ S V
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
R++ + A + +++++ L++ GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
G+ L +AAARG +++L S L +N+N + G T L L N E R LL + +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPD 64
Query: 625 IENKNGQSAIEVANQMQLNDIIELL 649
++++ G + I A + D ++ L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTL 89
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 549 LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNN 608
LLR L + F V+ +AA G + LQ+ L ++N D+ G PLH A
Sbjct: 57 LLRGANPDLKDRTGFA--VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 609 NIESVRYLLSQHVDLTIENKN--GQSAIEVANQMQLNDIIELLKSS 652
++ V +L+ +H + ++N G +A ++A N+++ L++++
Sbjct: 115 HLRVVEFLV-KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 32.3 bits (72), Expect = 0.95, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVS-VH 525
A+ A R G +D ++ + + AD+++ D + LH A G L +V++ +++ S V
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
R++ + A + +++++ L++ GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
GA+ + D ++H A G LD ++ LE V+I DN PLH A ++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 548 R-LLRHCGAHL 557
L++H +++
Sbjct: 120 EFLVKHTASNV 130
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
G+ L +AAARG +++L S L +N+N + G T L L N E R LL + +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPD 64
Query: 625 IENKNGQSAIEVANQMQLNDIIELL 649
++++ G + I A + D ++ L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTL 89
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 42/207 (20%)
Query: 494 TDFDRRNILHTACSVGKLDIVKYCL----ENGVSVHIRDNYDISPLHEAVIADQHDIIRL 549
D D LH A G L V + + G + I +N +PLH AVI ++RL
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 550 L-----------RH--CGAHLTNE---PMFLGDVLTNAA-------AR---GMI------ 577
L RH AHL E P L +L +AA AR G+
Sbjct: 65 LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 124
Query: 578 -----KRLQSYLLAGINLNQVD-SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ 631
+ +Q L G +++ VD G +PL AV NN++ V+ LL ++ + +G
Sbjct: 125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS 184
Query: 632 SAIEVANQMQLNDIIELLKSSETKSKV 658
SA+ A+ L ++ L S S +
Sbjct: 185 SALHSASGRGLLPLVRTLVRSGADSSL 211
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 9/120 (7%)
Query: 490 DISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI----SPLHEAVIADQHD 545
D+ ++D LH A + + V+ LE G + D DI SPL AV +
Sbjct: 108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADI---DAVDIKSGRSPLIHAVENNSLS 164
Query: 546 IIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAA 604
+++LL GA++ N M+ G L +A+ RG++ +++ + +G + + + TPL A
Sbjct: 165 MVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVA 223
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV + ++ + +GA+++ + + LH+A G L +V+ + +G +++ ++
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+PL ++A +I +LR
Sbjct: 217 DTPL---MVARSRRVIDILR 233
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 529 NYD-ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG-DVLTNAAARGMIKRLQSYLLA 586
NYD ++ LH AV + + ++LL GA + + G L +A + +Q L
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
G N+N G + LH+A + VR L+ D +++N + + + VA ++ DI+
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232
Query: 647 E 647
Sbjct: 233 R 233
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.8 bits (81), Expect = 0.080, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 549 LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNN 608
LLR L + F V+ +AA G + LQ+ L ++N D+ G PLH A
Sbjct: 57 LLRGANPDLKDRTGFA--VIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG 114
Query: 609 NIESVRYLLSQHVDLTIENKN--GQSAIEVANQMQLNDIIELLKSS 652
++ V +L+ +H + ++N G +A ++A N+++ L++++
Sbjct: 115 HLRVVEFLV-KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVS-VH 525
A+ A R G +D ++ + + AD+++ D + LH A G L +V++ +++ S V
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG 131
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
R++ + A + +++++ L++ GA
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 32.0 bits (71), Expect = 0.98, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
GA+ + D ++H A G+LD ++ LE V+I DN PLH A ++
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 548 R-LLRHCGAHL 557
L++H +++
Sbjct: 120 EFLVKHTASNV 130
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
G+ L +AAARG +++L S L +N+N + G T L L N E R LL + +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPD 64
Query: 625 IENKNGQSAI-EVANQMQLNDIIELLK 650
++++ G + I + A QL+ + LL+
Sbjct: 65 LKDRTGFAVIHDAARAGQLDTLQTLLE 91
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 38/186 (20%)
Query: 471 SAVREGDIDKIK-EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
+ REG+ ++ + N D++ D + LH AC G+ +V+ + G +++ +
Sbjct: 11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70
Query: 530 YDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGIN 589
D +PLH A DI+ Q L +
Sbjct: 71 GDDTPLHLAASHGHRDIV---------------------------------QKLLQYKAD 97
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+N V+ G PLH A + L++ ++I NK G+ ++ A + ELL
Sbjct: 98 INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA----PLRELL 153
Query: 650 KSSETK 655
+ K
Sbjct: 154 RERAEK 159
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 561 PMFLGDVLTNAAARGMIKRLQSYLLAGIN-LNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
P F+ D+ T G ++ +L N LNQ D G +PLH A V L+ +
Sbjct: 3 PEFMDDIFTQCR-EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 620 HVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ + N+ + + +A DI++ L
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKL 91
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 567 VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIE 626
V+ +AA G + LQ+ L ++N D+ G PLH A ++ V +L+ +H +
Sbjct: 73 VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-KHTASNVG 131
Query: 627 NKN--GQSAIEVANQMQLNDIIELLKSS 652
++N G +A ++A N+++ L++++
Sbjct: 132 HRNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 445 VAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHT 504
+A+ L L G LK A+ A R G +D ++ + + AD+++ D + LH
Sbjct: 52 IARRLLLRGANP--DLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL 109
Query: 505 ACSVGKLDIVKYCLENGVS-VHIRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
A G L +V++ +++ S V R++ + A + +++++ L++ GA
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
G+ L +AAARG +++L S L +N+N + G T L L N E R LL + +
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRGANPD 64
Query: 625 IENKNGQSAIEVANQMQLNDIIELL 649
++++ G + I A + D ++ L
Sbjct: 65 LKDRTGNAVIHDAARAGFLDTLQTL 89
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 524 VHIRDNYDISPLHEAVIADQHDIIRLLRHCGAH------LTNEPMFLGDVLTNAAARGMI 577
++ ++N +PLH AVI +Q +I L G N P+ L A+ G++
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 94
Query: 578 KR------LQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENK-NG 630
+ L S +L N N G T LH A ++ + V L+S D+ + NG
Sbjct: 95 TQSCTTPHLHS-ILKATNYN-----GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 148
Query: 631 QSAIEVANQMQLNDIIELL 649
++A+ +A +Q D++ LL
Sbjct: 149 RTALHLAVDLQNPDLVSLL 167
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R+G D+++ + G ++ + LH AC G +D KY G VH +
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG-EVHSL-WHG 84
Query: 532 ISPLHEAVIADQHDII 547
P+H AV A++ D++
Sbjct: 85 QKPIHLAVXANKTDLV 100
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 34/165 (20%)
Query: 474 REGDIDKIK-EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI 532
REG+ ++ + N D++ D + LH AC G+ +V+ + G +++ + D
Sbjct: 9 REGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD 68
Query: 533 SPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQ 592
+PLH A DI+ Q L ++N
Sbjct: 69 TPLHLAASHGHRDIV---------------------------------QKLLQYKADINA 95
Query: 593 VDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
V+ G PLH A + L++ ++I NK G+ ++ A
Sbjct: 96 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKA 140
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G D ++++ Y ADI+ + LH AC G+ + + + NG V I + Y
Sbjct: 74 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG 133
Query: 532 ISPLHEA 538
P+ +A
Sbjct: 134 EMPVDKA 140
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A REG ++ + GA I++ + LH A S G DIV+ L+ ++ + +
Sbjct: 41 ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 100
Query: 532 ISPLHEAVIADQHDIIRLLRHCGA 555
PLH A Q + L GA
Sbjct: 101 NVPLHYACFWGQDQVAEDLVANGA 124
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
+LNQ D G +PLH A V L+ + + + N+ + + +A DI++
Sbjct: 26 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK 85
Query: 649 L 649
L
Sbjct: 86 L 86
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%)
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
+++VD+ G TPL+ AV NN+IE + L+ + D+ ++N
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 524 VHIRDNYDISPLHEAVIADQHDIIRLLRHCGA------HLTNEPMFLGDVLTNAAARGMI 577
++ ++N +PLH AVI +Q +I L G N P+ L A+ G++
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 578 KR------LQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTI-ENKNG 630
+ L S +L N N G T LH A ++ + V L+S D+ E NG
Sbjct: 98 TQSCTTPHLHS-ILKATNYN-----GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG 151
Query: 631 QSAIEVANQMQLNDIIELL 649
++A+ +A +Q D++ LL
Sbjct: 152 RTALHLAVDLQNPDLVSLL 170
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 7/120 (5%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD-----NYD-ISPLHEAVIA 541
G D + DF LH AC G L V ++ + H+ NY+ + LH A I
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 127
Query: 542 DQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL-AGINLNQVDSIGLTP 600
I+ LL GA + + G + A L S LL G ++N+V G +P
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
LN +++ TPLH AV+ N E LL D + + G + + +A + + +L
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97
Query: 650 KSSETKSKVH 659
S T +H
Sbjct: 98 TQSCTTPHLH 107
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%)
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLA 586
RD+Y+ +PL A + + I L L ++ + L A + + L
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
G N+N D G TPL +++ E +LL ++ N G++ + VA++ ++I+
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIV 150
Query: 647 ELL 649
+ L
Sbjct: 151 KKL 153
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDI 546
+GA+++ + + L A G+ +IVK LE G + RD ++ A I + ++
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182
Query: 547 IRLL 550
I++
Sbjct: 183 IKIF 186
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 45/87 (51%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV+ + +++ + G++++ DF + L + G ++ + LE+G +V+ R+
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLT 558
+PL A + +I++ L GA ++
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADIS 161
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 576 MIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIE 635
++ + + AG ++N D TPL AVL V YL D TI NK+ +SA+
Sbjct: 145 IVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALH 204
Query: 636 VA 637
A
Sbjct: 205 QA 206
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 554 GAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLA--GINLNQVDSIGLTPLHAAVLNNNIE 611
GA + + G + AA+ + YL+ G N ++ D G TP+ A IE
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIE 327
Query: 612 SVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
V YL+ Q + + +A ++A ++I+++
Sbjct: 328 VVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNN 608
D L AAARG ++ +++ L AG N N +S G P+ ++ +
Sbjct: 13 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS 56
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 586 AGINLNQVD-SIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQM 640
AG +L+ D GLT LH A E V L+ D+ +E++ G +A+E+A ++
Sbjct: 99 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 586 AGINLNQVDSIG-LTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQM 640
AG +L+ D G LT LH A E V L+ D+ +E++ G +A+E+A ++
Sbjct: 98 AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNN 609
+ AG N+N DS G TPLH A N+
Sbjct: 74 ITAGANVNSPDSHGWTPLHCAASCND 99
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 6/104 (5%)
Query: 454 RQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDI 513
R LN L +L AL G+++ +++ D S + + LH A I
Sbjct: 16 RARLNPLVLLLDAAL------TGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI 69
Query: 514 VKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL 557
V + + G +V+ D++ +PLH A + I L GA +
Sbjct: 70 VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human Ubiquitin-
Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 298 VQSQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNR 345
VQS +++ ++ H S H+V P+E + +T+ FP+NR
Sbjct: 98 VQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANR 145
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKN-----GQSAIEVA 637
G ++Q ++G T LH A L +N+E+ L+ +L E GQ+A+ +A
Sbjct: 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,946,212
Number of Sequences: 62578
Number of extensions: 798463
Number of successful extensions: 2699
Number of sequences better than 100.0: 137
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 2013
Number of HSP's gapped (non-prelim): 479
length of query: 659
length of database: 14,973,337
effective HSP length: 105
effective length of query: 554
effective length of database: 8,402,647
effective search space: 4655066438
effective search space used: 4655066438
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)