RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9757
(659 letters)
>gnl|CDD|181876 PRK09461, ansA, cytoplasmic asparaginase I; Provisional.
Length = 335
Score = 368 bits (946), Expect = e-123
Identities = 162/353 (45%), Positives = 216/353 (61%), Gaps = 26/353 (7%)
Query: 79 VLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVKDTR 138
V YTGGTIGM+ ++QG P S L ++ P + P + D
Sbjct: 8 VAYTGGTIGMQRSDQG-YIPVSGHLQRQLALMPEFHR----------------PEMPD-- 48
Query: 139 RVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALSFML 198
+ + EYTPL+DSS+M W IA+DIK Y+ YDGFVILHGTDT++YTASALSFML
Sbjct: 49 ---FTIHEYTPLIDSSDMTPEDWQHIADDIKANYDDYDGFVILHGTDTMAYTASALSFML 105
Query: 199 ENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTVKMS 258
ENLGKPVIVTGSQI + ++RSDG N + AL +A NY I EVT++FN+KL RGNRT K
Sbjct: 106 ENLGKPVIVTGSQIPLAELRSDGQTNLLNALYVAANYPINEVTLFFNNKLFRGNRTTKAH 165
Query: 259 VKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYPHISNH 318
FDAF SPN P L + G+ I + V +G++ IYP IS
Sbjct: 166 ADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGE-GELIVHPITPQPIGVVTIYPGISAE 224
Query: 319 TVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTS-DTY 377
VR+F++ P++ +IL +YG GN P N L+ EL+ AS+R +++VN +QC G + Y
Sbjct: 225 VVRNFLRQPVKALILRSYGVGNAPQN-PALLQELKEASERGIVVVNLTQCMSGKVNMGGY 283
Query: 378 EAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
G L+ GVI+G DMT EAALTKL Y+LS+ EL+ ++ + M N+RGEL+
Sbjct: 284 ATGNALAHAGVISGADMTVEAALTKLHYLLSQ-ELSTEEIRQAMQQNLRGELT 335
>gnl|CDD|199207 cd08963, L-asparaginase_I, Type I (cytosolic) bacterial
L-asparaginase. Asparaginases (amidohydrolases, E.C.
3.5.1.1) are enzymes that catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. In bacteria,
there are two classes of amidohydrolases. This model
represents type I L-asparaginases, which are highly
specific for asparagine and localized in the cytosol.
Type I L-asparaginase acts as a dimer. A conserved
threonine residue is thought to supply the nucleophile
hydroxy-group that attacks the amide bond. Many
bacterial L-asparaginases have both L-asparagine and
L-glutamine hydrolysis activities, to a different
degree, and some of them are annotated as
asparaginase/glutaminase. One example of an enzyme with
no L-glutaminase activity is the type I L-asparaginase
from Wolinella succinogenes.
Length = 316
Score = 342 bits (880), Expect = e-113
Identities = 129/336 (38%), Positives = 182/336 (54%), Gaps = 30/336 (8%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVK 135
K+L+LYTGGTI E G LAP+ LT + L Y LP +
Sbjct: 2 KILLLYTGGTIASVKTEGG-LAPA---LTAEEL---LSY----------------LPELL 38
Query: 136 DTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALS 195
+ + VE P +DSSNM W++IA I E Y+ YDGFVI HGTDT++YTA+ALS
Sbjct: 39 EDCFIE---VEQLPNIDSSNMTPEDWLRIARAIAENYDGYDGFVITHGTDTMAYTAAALS 95
Query: 196 FMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTV 255
F+L+NL KPV++TGSQ+ + + SD N AL A + I V V FN KLIRG R
Sbjct: 96 FLLQNLPKPVVLTGSQLPLGEPGSDARRNLRDALRAASSGSIRGVYVAFNGKLIRGTRAR 155
Query: 256 KMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYPHI 315
K+ FDAF+S N+P LA++G + + F L+ NV +L++ P +
Sbjct: 156 KVRTTSFDAFESINYPLLAEIGAGGLTLERLLQYEPLPSLFY--PDLDPNVFLLKLIPGL 213
Query: 316 SNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTS- 374
+ + ++ G+IL +G+GN P + DL+ L A+ R +V +QC GG+
Sbjct: 214 LPAILDALLEKYPRGLILEGFGAGNIPYDG-DLLAALEEATARGKPVVVTTQCPYGGSDL 272
Query: 375 DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKS 410
Y G+ L GVI G DMT EAA+ KL ++L ++
Sbjct: 273 SVYAVGQALLEAGVIPGGDMTTEAAVAKLMWLLGQT 308
>gnl|CDD|216074 pfam00710, Asparaginase, Asparaginase.
Length = 318
Score = 339 bits (873), Expect = e-112
Identities = 125/340 (36%), Positives = 170/340 (50%), Gaps = 34/340 (10%)
Query: 76 KVLVLYTGGTIGM-EDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRV 134
K+L+LYTGGTI M D GA+AP+S D + P L D + +
Sbjct: 1 KILILYTGGTIAMVADPSGGAVAPASGE--DLLAAVPELAD---------------IADI 43
Query: 135 KDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASAL 194
+ VE P +DSSNM W+++A I E + YDGFV+ HGTDTL TAS L
Sbjct: 44 E---------VEQLPNIDSSNMTPADWLRLAERINEALDDYDGFVVTHGTDTLEETASFL 94
Query: 195 SFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIRGN 252
S MLENL KPV++TG+Q SDG N + AL +A + D V V FN KL RG
Sbjct: 95 SLMLENLDKPVVLTGAQRPADAPSSDGPENLLDALRVAASPDARGRGVLVVFNDKLHRGR 154
Query: 253 RTVKMSVKEFDAFDSPNFPNLAKVG-LTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRI 311
R K DAF SPNF L +VG + + R + +L+ V IL +
Sbjct: 155 RVTKTHTSSLDAFASPNFGPLGEVGEGRVKFFRDPLRRRRGAFPLRLPDKLDPRVAILYL 214
Query: 312 YPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRG 371
YP + + + + + +G++L +G+GN P L+D L+ A R + +V SQC G
Sbjct: 215 YPGMDAELLDALLAAGAKGIVLEGFGAGNVP---PALLDALKEAVARGIPVVVASQCGSG 271
Query: 372 GTSDT-YEAGKILSGIGVINGYDMTPEAALTKLSYVLSKS 410
S Y G+ L GVI+ D+TPE A KL L +
Sbjct: 272 RVSLGYYGTGRDLLKAGVISAGDLTPEKARIKLMLALGQG 311
>gnl|CDD|214873 smart00870, Asparaginase, Asparaginase, found in various plant,
animal and bacterial cells. Asparaginase catalyses the
deamination of asparagine to yield aspartic acid and an
ammonium ion, resulting in a depletion of free
circulatory asparagine in plasma. The enzyme is
effective in the treatment of human malignant lymphomas,
which have a diminished capacity to produce asparagine
synthetase: in order to survive, such cells absorb
asparagine from blood plasma..- if Asn levels have been
depleted by injection of asparaginase, the lymphoma
cells die.
Length = 323
Score = 322 bits (828), Expect = e-105
Identities = 110/344 (31%), Positives = 159/344 (46%), Gaps = 40/344 (11%)
Query: 77 VLVLYTGGTIGM-EDNEQGALAP--SSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
+LVLYTGGTI M D GA+ P ++ L + P + D+
Sbjct: 1 ILVLYTGGTIAMKADPSTGAVGPTAGAEELLALLPALP---ELADDI------------- 44
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEY--YESYDGFVILHGTDTLSYTA 191
VE +DSSNM W+K+A I E + YDG V+ HGTDTL TA
Sbjct: 45 ----------EVEQVANIDSSNMTPEDWLKLAKRINEALADDGYDGVVVTHGTDTLEETA 94
Query: 192 SALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLI 249
LS L++L KPV++TG+ + SDG N + A+ +A + + V V FN ++
Sbjct: 95 YFLSLTLDSLDKPVVLTGAMRPATALSSDGPANLLDAVRVAASPEARGRGVLVVFNDEIH 154
Query: 250 RGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNL---NV 306
R R K DAF SPNF L V V R T + + + V
Sbjct: 155 RARRVTKTHTSRVDAFQSPNFGPLGYVDEGGVVYYTRPTRRHTKRSPFLLDLKDALLPKV 214
Query: 307 GILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCS 366
I++ YP + + + + S +G++L G+GN P DL++ L+ A +R + +V S
Sbjct: 215 AIVKAYPGMDAELLDALLDSGAKGLVLEGTGAGNVP---PDLLEALKEALERGIPVVRTS 271
Query: 367 QCSRGGTSDT-YEAGKILSGIGVINGYDMTPEAALTKLSYVLSK 409
+C G Y G+ L+ GVI+ D+TPE A KL L K
Sbjct: 272 RCLSGRVDPGYYATGRDLAKAGVISAGDLTPEKARIKLMLALGK 315
>gnl|CDD|129610 TIGR00519, asnASE_I, L-asparaginase, type I. Two related families
of asparaginase are designated type I and type II
according to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
secreted enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type I of E. coli. Archaeal putative asparaginases
are of this type but contain an extra ~ 80 residues in a
conserved N-terminal region. These archaeal homologs are
included in this model.
Length = 336
Score = 265 bits (679), Expect = 2e-83
Identities = 120/362 (33%), Positives = 180/362 (49%), Gaps = 38/362 (10%)
Query: 76 KVLVLYTGGTIGM-EDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRV 134
+ ++ TGGTI D GA+ P + + P L D N+
Sbjct: 3 DISIISTGGTIASKVDYRTGAVHPVFT-ADELLSAVPELLD---------IANI------ 46
Query: 135 KDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASAL 194
D + S NM +W++IA +K+ Y+ YDGFVI HGTDT++YTA+AL
Sbjct: 47 -DGE--------ALMNILSENMKPEYWVEIAEAVKKEYDDYDGFVITHGTDTMAYTAAAL 97
Query: 195 SFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNY------DIPEVTVYFNHKL 248
SFMLE KPV+ TG+Q S + SD N + A+ A Y + VT+ FN +L
Sbjct: 98 SFMLET-PKPVVFTGAQRSSDRPSSDAALNLLCAVRAATEYIAEVTVCMHGVTLDFNCRL 156
Query: 249 IRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGI 308
RG + K DAF S N P LA++ + ++R + +V +L V +
Sbjct: 157 HRGVKVRKAHTSRRDAFASINAPPLAEINPDGIEYLNEVYRPRGEDELEVHDRLEEKVAL 216
Query: 309 LRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQC 368
++IYP IS +R+++ +G+++ G G+ P N + EL+ ASDR V++V +QC
Sbjct: 217 IKIYPGISPDIIRNYLSKGYKGIVIEGTGLGHAPQN---KLQELQEASDRGVVVVMTTQC 273
Query: 369 SRGGTSDT-YEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRG 427
G + Y G+ L GVI G DM PE AL KL ++L + ++ K +M NI G
Sbjct: 274 LNGRVNMNVYSTGRRLLQAGVIGGEDMLPEVALVKLMWLLGQYS-DPEEAKKMMSKNIAG 332
Query: 428 EL 429
E+
Sbjct: 333 EI 334
>gnl|CDD|223330 COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase
subunit D [Amino acid transport and metabolism /
Translation, ribosomal structure and biogenesis].
Length = 351
Score = 251 bits (644), Expect = 8e-78
Identities = 110/363 (30%), Positives = 156/363 (42%), Gaps = 41/363 (11%)
Query: 75 SKVLVLYTGGTIGM-EDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
K+L+L TGGTI D+ GA+ P+S + +LP
Sbjct: 20 PKILILATGGTIASGTDSSTGAVTPTS----------------------GALEILALLPA 57
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESY--DGFVILHGTDTLSYTA 191
V E +DSS+M W+++A I E + DG VI HGTDT+ TA
Sbjct: 58 VPALNIAANIEGEQVLNIDSSDMTPEDWLRLAEAINEALDDGDVDGVVITHGTDTMEETA 117
Query: 192 SALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVY--FNHKLI 249
LS L KPV++TG+ SDG N A+ +A + V V FN ++
Sbjct: 118 FFLSLTLNT-PKPVVLTGAMRPADAPSSDGPANLRNAVSVAADPKSRGVGVLVVFNDRIH 176
Query: 250 RGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIK---KFDVQSQLNLNV 306
RG R K FDAF+SPN L + ID S FR + FDV V
Sbjct: 177 RGVRVTKTHTSRFDAFESPNLGPLGE----IDRGKVSFFRDPYRRGDSGFDVSPLTEPKV 232
Query: 307 GILRIYPHISNHTVRSF-MQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNC 365
I++ YP +S+ + S + S +G++L GSGN LI+ + AS R + +V
Sbjct: 233 VIIKYYPGLSSSLIDSALLSSGAKGLVLEGTGSGNVT---PALIESIERASKRGIPVVYS 289
Query: 366 SQCSRGGTSDT-YEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTN 424
S+C G + Y G L+ G I D+ PE A L L L ++ + N
Sbjct: 290 SRCLSGRVNYGVYGTGNDLAPAGAIGAGDLNPEKARVLLMLALGNG-LDSEEVIQSIFEN 348
Query: 425 IRG 427
+ G
Sbjct: 349 LYG 351
>gnl|CDD|199206 cd08962, GatD, GatD subunit of archaeal Glu-tRNA amidotransferase.
GatD is involved in the alternative synthesis of
Gln-tRNA(Gln) in archaea via the transamidation of
incorrectly charged Glu-tRNA(Gln). GatD is active as a
dimer, and it provides the amino group required for this
reaction. GatD is related to bacterial L-asparaginases
(amidohydrolases), which catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. This CD spans
both the L-asparaginase_like domain and an N-terminal
supplementary domain.
Length = 402
Score = 189 bits (482), Expect = 9e-54
Identities = 118/366 (32%), Positives = 174/366 (47%), Gaps = 51/366 (13%)
Query: 76 KVLVLYTGGTIGME-DNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRV 134
KV ++ TGGTI D GA++P+ + +R P L D N+
Sbjct: 72 KVSIISTGGTIASRVDYRTGAVSPAFTA-EELLRAIPELLDI---------ANIKA---- 117
Query: 135 KDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYES-YDGFVILHGTDTLSYTASA 193
VL+ ++ S NM +W+KIA + + + DG V+ HGTDT+ YTASA
Sbjct: 118 ----EVLFNIL-------SENMTPEYWVKIAEAVYKEIKEGADGVVVAHGTDTMHYTASA 166
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHK------ 247
LSFMLE L PV+ G+Q S + SD N I A+++A + DI EV V H
Sbjct: 167 LSFMLETLPVPVVFVGAQRSSDRPSSDAAMNLIAAVLVAAS-DIAEVVVVM-HGTTSDDY 224
Query: 248 --LIRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKK-----FDVQS 300
L RG R KM DAF S N LAKV D K S +K ++
Sbjct: 225 CLLHRGTRVRKMHTSRRDAFQSINDEPLAKV----DPPGKIEKLSKDYRKRGDEELELND 280
Query: 301 QLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNV 360
+L V +++ YP + + ++ +G+++ G G+ DLI ++ A D +
Sbjct: 281 KLEEKVALIKFYPGMDPEIIDFYVDKGYKGIVIEGTGLGHVS---EDLIPSIKKAIDDGI 337
Query: 361 IIVNCSQCSRGGTSDT-YEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKD 419
+V SQC G + Y G+ L GVI G DM PE A KL +VL ++ L++ +
Sbjct: 338 PVVMTSQCIYGRVNLNVYSTGRELLKAGVIPGEDMLPETAYVKLMWVLGNTD-DLEEVRK 396
Query: 420 IMMTNI 425
+M+TN+
Sbjct: 397 LMLTNL 402
>gnl|CDD|233752 TIGR02153, gatD_arch, glutamyl-tRNA(Gln) amidotransferase, subunit
D. This peptide is found only in the Archaea. It is
part of a heterodimer, with GatE (TIGR00134), that acts
as an amidotransferase on misacylated Glu-tRNA(Gln) to
produce Gln-tRNA(Gln). The analogous amidotransferase
found in bacteria is the GatABC system, although GatABC
homologs in the Archaea appear to act instead on
Asp-tRNA(Asn) [Protein synthesis, tRNA aminoacylation].
Length = 404
Score = 181 bits (460), Expect = 1e-50
Identities = 113/370 (30%), Positives = 172/370 (46%), Gaps = 47/370 (12%)
Query: 75 SKVLVLYTGGTIGME-DNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
KV ++ TGGTI D E GA+ P+ + R P L +
Sbjct: 63 PKVSIISTGGTIASRVDYETGAVYPAFTA-EELARAVPELLE------------------ 103
Query: 134 VKDTRRVLYKVVEYTPLLD--SSNMCQVHWIKIANDI-KEYYESYDGFVILHGTDTLSYT 190
++ + + S NM +WIKIA + K E DG V+ HGTDT++YT
Sbjct: 104 --------IANIKARAVFNILSENMKPEYWIKIAEAVAKALKEGADGVVVAHGTDTMAYT 155
Query: 191 ASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHK--- 247
A+ALSFM E L PV++ G+Q S + SD N I A+ A + I EVTV H
Sbjct: 156 AAALSFMFETLPVPVVLVGAQRSSDRPSSDAALNLICAVRAATS-PIAEVTVVM-HGETS 213
Query: 248 -----LIRGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQ 301
+ RG + KM DAF S N +AK+ ++ +R K+ ++ +
Sbjct: 214 DTYCLVHRGVKVRKMHTSRRDAFQSINDIPIAKIDPDEGIEKLRIDYRRRGEKELELDDK 273
Query: 302 LNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVI 361
V +++ YP IS + + +G+++ G G+ D I ++ A+D V
Sbjct: 274 FEEKVALVKFYPGISPEIIEFLVDKGYKGIVIEGTGLGHVS---EDWIPSIKRATDDGVP 330
Query: 362 IVNCSQCSRGGTSD-TYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDI 420
+V SQC G + Y G+ L GVI DM PE A KL +VL +++ L++ + +
Sbjct: 331 VVMTSQCLYGRVNLNVYSTGRELLKAGVIPCEDMLPEVAYVKLMWVLGQTD-DLEEVRKM 389
Query: 421 MMTNIRGELS 430
M TNI GE++
Sbjct: 390 MRTNIAGEIN 399
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 174 bits (444), Expect = 2e-48
Identities = 118/380 (31%), Positives = 180/380 (47%), Gaps = 51/380 (13%)
Query: 67 NSSEDRLESKVLVLYTGGTIGME-DNEQGALAPSSKPLT--DKIRENPLLYDR-HYDVCK 122
+D V +L TGGTI + D GA+ P+ T D +R P L D +
Sbjct: 68 EIEKDPGLPNVSILSTGGTIASKVDYRTGAVTPA---FTAEDLLRAVPELLDIANIRG-- 122
Query: 123 TQDGNVLVLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYES-YDGFVIL 181
RVL+ ++ S NM +W++IA + E ++ DG V+
Sbjct: 123 ----------------RVLFNIL-------SENMTPEYWVEIAEAVYEEIKNGADGVVVA 159
Query: 182 HGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVT 241
HGTDT+ YTA+ALSFML P++ G+Q S + SD N I A +LA DI EV
Sbjct: 160 HGTDTMHYTAAALSFML-KTPVPIVFVGAQRSSDRPSSDAAMNLICA-VLAATSDIAEVV 217
Query: 242 VYFNHK--------LIRGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNM-KSIFRSS 291
V H L RG R KM DAF S N LAKV + + +R
Sbjct: 218 VVM-HGTTSDDYCALHRGTRVRKMHTSRRDAFQSINDKPLAKVDYKEGKIEFLRKDYRKR 276
Query: 292 TIKKFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDE 351
K+ ++ +L V +++ YP + + ++ +G+++ G G+ +DLI
Sbjct: 277 GEKELELNDKLEEKVALIKFYPGMDPEILDFYVDKGYKGIVIEGTGLGHVS---TDLIPS 333
Query: 352 LRLASDRNVIIVNCSQCSRGGTSDT-YEAGKILSGIGVINGYDMTPEAALTKLSYVLSKS 410
++ A+D + +V SQC G + Y G+ L GVI G DM PE A KL +VL +
Sbjct: 334 IKRATDDGIPVVMTSQCLYGRVNMNVYSTGRDLLKAGVIPGEDMLPEVAYVKLMWVLGNT 393
Query: 411 ELTLQQKKDIMMTNIRGELS 430
L++ +++M+TN+ GE++
Sbjct: 394 Y-DLEEVRELMLTNLAGEIN 412
>gnl|CDD|199205 cd00411, L-asparaginase_like, Bacterial L-asparaginases and related
enzymes. Asparaginases (amidohydrolases, E.C. 3.5.1.1)
are dimeric or tetrameric enzymes that catalyze the
hydrolysis of asparagine to aspartic acid and ammonia.
In bacteria, there are two classes of amidohydrolases,
one highly specific for asparagine and localized to the
periplasm (type II L-asparaginase), and a second
(asparaginase- glutaminase) present in the cytosol (type
I L-asparaginase) that hydrolyzes both asparagine and
glutamine with similar specificities and has a lower
affinity for its substrate. Bacterial L-asparaginases
(type II) are potent antileukemic agents and have been
used in the treatment of acute lymphoblastic leukemia
(ALL). A conserved threonine residue is thought to
supply the nucleophile hydroxy-group that attacks the
amide bond. Many bacterial L-asparaginases have both
L-asparagine and L-glutamine hydrolysis activities, to a
different degree, and some of them are annotated as
asparaginase/glutaminase. This wider family also
includes a subunit of an archaeal Glu-tRNA
amidotransferase.
Length = 320
Score = 156 bits (396), Expect = 1e-42
Identities = 93/342 (27%), Positives = 151/342 (44%), Gaps = 37/342 (10%)
Query: 77 VLVLYTGGTI-GMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVK 135
+ +L TGGTI G+ D+ + + +K+ + +P +K
Sbjct: 3 ITILATGGTIAGVGDSATYSAYVAGALGVEKL--------------------IKAVPELK 42
Query: 136 DTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDI-KEYYESYDGFVILHGTDTLSYTASAL 194
+ V + + + S ++ W+K+A ++ K DG VI HGTDT TA L
Sbjct: 43 ELANVKGEQLMN---IASEDITPDDWLKLAKEVAKLLDSDVDGIVITHGTDTXEETAYFL 99
Query: 195 SFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIRGN 252
S L+N KPV++ G+ + +DG N A+ +A + D V V N K+ G
Sbjct: 100 SLTLKN-DKPVVLVGAMRPSTAMSADGPFNLYNAVRVAKDKDSRGRGVLVVMNDKVHSGR 158
Query: 253 RTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL--NVGIL 309
K + FDAF S N+ L ++ I K + + +FDV S + V I+
Sbjct: 159 DVSKTNTSGFDAFRSINYGPLGEIKDNKIYYQRKPARKHTDESEFDV-SDIKSLPKVDIV 217
Query: 310 RIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCS 369
+YP +S+ + + +G++L G+G+ P D+ L AS R V +V SQ
Sbjct: 218 YLYPGLSDDIYDALVDLGYKGIVLAGTGNGSVP---YDVFPVLSSASKRGVAVVRSSQVI 274
Query: 370 RGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSE 411
GG A K+ GVI D+ PE A L + L+ ++
Sbjct: 275 YGGV--DLNAEKVDLKAGVIPAGDLNPEKARVLLMWALTHTK 314
>gnl|CDD|199208 cd08964, L-asparaginase_II, Type II (periplasmic) bacterial
L-asparaginase. Asparaginases (amidohydrolases, E.C.
3.5.1.1) are enzymes that catalyze the hydrolysis of
asparagine to aspartic acid and ammonia. In bacteria,
there are two classes of amidohydrolases. This model
represents type II L-asparaginases, which tend to be
highly specific for asparagine and localized to the
periplasm. They are potent antileukemic agents and have
been used in the treatment of acute lymphoblastic
leukemia (ALL), but not without severe side effects.
Tumor cells appear to have a heightened dependence on
exogenous L-aspartate, and depleting their surroundings
of L-aspartate may starve cancerous ALL cells. Type II
L-asparaginase acts as a tetramer, which is actually a
dimer of two tightly bound dimers. A conserved threonine
residue is thought to supply the nucleophile
hydroxy-group that attacks the amide bond. Many
bacterial L-asparaginases have both L-asparagine and
L-glutamine hydrolysis activities, to a different
degree, and some of them are annotated as
asparaginase/glutaminase.
Length = 319
Score = 125 bits (316), Expect = 9e-32
Identities = 86/347 (24%), Positives = 137/347 (39%), Gaps = 50/347 (14%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLV--LPR 133
++ VL TGGTI + GA A + G L+ +P
Sbjct: 2 RIAVLATGGTIAGTADSSGAYAAPTL-----------------------SGEELLAAVPG 38
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYY--ESYDGFVILHGTDTLSYTA 191
+ D V +V + + L SS+M W+ +A + E DG V+ HGTDTL TA
Sbjct: 39 LADVADV--EVEQVSNL-PSSDMTPADWLALAARVNEALADPDVDGVVVTHGTDTLEETA 95
Query: 192 SALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPE-----VTVYFNH 246
L L + KPV++TG+ +DG N + A+ +A + PE V V FN
Sbjct: 96 YFLDLTL-DSDKPVVLTGAMRPADAPSADGPANLLDAVRVAAS---PEARGRGVLVVFND 151
Query: 247 KLIRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNL-- 304
++ K DAF SP F L +D +R +
Sbjct: 152 EIHAARDVTKTHTTSLDAFASPGFGPLG----YVDGGKVRFYRRPARPHTLPSEFDDELP 207
Query: 305 NVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVN 364
V I+ Y + + + + +G+++ +G+GN P L++ L A + + +V
Sbjct: 208 RVDIVYAYAGADGALLDAAVAAGAKGIVIAGFGAGNVP---PALVEALERAVAKGIPVVR 264
Query: 365 CSQCSRGGTSDTYE--AGKILSGIGVINGYDMTPEAALTKLSYVLSK 409
S+ G Y G L+ G I D++P+ A L L+
Sbjct: 265 SSRVGNGRVLPVYGYGGGADLAEAGAIFAGDLSPQKARILLMLALAA 311
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 98.6 bits (246), Expect = 2e-24
Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 33/157 (21%)
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
D D R LH A S G L++VK LENG V+ +DN +PLH A +I++LL
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL-- 59
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
L G ++N D G TPLH A N N++
Sbjct: 60 -------------------------------LEKGADVNARDKDGNTPLHLAARNGNLDV 88
Query: 613 VRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
V+ LL D+ +K+G++ + +A + ++++LL
Sbjct: 89 VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125
Score = 91.7 bits (228), Expect = 4e-22
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ +K + GAD++ D D R LH A G L+IVK LE G V+ RD
Sbjct: 14 AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A D+++LL L G ++N
Sbjct: 74 NTPLHLAARNGNLDVVKLL---------------------------------LKHGADVN 100
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLL 617
D G TPLH A N ++E V+ LL
Sbjct: 101 ARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 65.9 bits (161), Expect = 5e-13
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 33/127 (25%)
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL 585
RD +PLH A ++++LL L
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLL---------------------------------LE 28
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI 645
G ++N D+ G TPLH A N ++E V+ LL + D+ +K+G + + +A + D+
Sbjct: 29 NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV 88
Query: 646 IELLKSS 652
++LL
Sbjct: 89 VKLLLKH 95
Score = 53.2 bits (128), Expect = 1e-08
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
N D G TPLH A N ++E V+ LL D+ ++ +G++ + +A + +I++LL
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59
>gnl|CDD|182958 PRK11096, ansB, L-asparaginase II; Provisional.
Length = 347
Score = 80.9 bits (200), Expect = 2e-16
Identities = 62/227 (27%), Positives = 102/227 (44%), Gaps = 10/227 (4%)
Query: 153 SSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQI 212
S +M W+ +A I + DGFVI HGTDT+ TA L + KPV++ G+
Sbjct: 79 SQDMNDEVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYFLD-LTVKCDKPVVLVGAMR 137
Query: 213 SIFQIRSDGVHNFIGALILAGNYDIPE--VTVYFNHKLIRGNRTVKMSVKEFDAFDSPNF 270
+ +DG N A++ A + V V N ++ G K + + F SPN+
Sbjct: 138 PSTAMSADGPLNLYNAVVTAADKASANRGVLVAMNDTVLDGRDVTKTNTTDVQTFQSPNY 197
Query: 271 PNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL--NVGILRIYPHISNHTVRSFMQSP 327
L + +D + +T FDV S+LN VGI+ Y + S+ ++ + +
Sbjct: 198 GPLGYIHNGKVDYQRTPARKHTTDTPFDV-SKLNELPKVGIVYNYANASDLPAKALVDAG 256
Query: 328 MEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTS 374
+G++ G+GN + D L A+ V +V S+ G T+
Sbjct: 257 YDGIVSAGVGNGNLYKT---VFDTLATAAKNGVAVVRSSRVPTGATT 300
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 73.4 bits (181), Expect = 4e-16
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 35/126 (27%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
LH A G L++VK LE G V++ D + LH A +I++LL
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLL----------- 47
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L G ++N D G T LH A N N+E V+ LL
Sbjct: 48 ----------------------LEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85
Query: 622 DLTIEN 627
D+ +++
Sbjct: 86 DINLKD 91
Score = 70.4 bits (173), Expect = 5e-15
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + G+++ +K + GAD+ D LH A G L+IVK LE+G V+ +D
Sbjct: 4 AAKNGNLELVKLLLEKGADV--NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61
Query: 532 ISPLHEAVIADQHDIIRLLRHCGA 555
+ LH A +I++LL GA
Sbjct: 62 NTALHLAARNGNLEIVKLLLEHGA 85
Score = 52.3 bits (126), Expect = 1e-08
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L AA G ++ ++ L G ++N D+ T LH A N N+E V+ LL D+ ++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 628 KNGQSAIEVANQMQLNDIIELL 649
K+G +A+ +A + +I++LL
Sbjct: 59 KDGNTALHLAARNGNLEIVKLL 80
Score = 50.7 bits (122), Expect = 5e-08
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
A R G+++ +K + +GAD++ D D LH A G L+IVK LE+G ++++D
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
>gnl|CDD|129611 TIGR00520, asnASE_II, L-asparaginase, type II. Two related
families of asparaginase (L-asparagine amidohydrolase,
EC 3.5.1.1) are designated type I and type II according
to the terminology in E. coli, which has both:
L-asparaginase I is a low-affinity enzyme found in the
cytoplasm, while L-asparaginase II is a high-affinity
periplasmic enzyme synthesized with a cleavable signal
sequence. This model describes L-asparaginases related
to type II of E. coli. Both the cytoplasmic and the cell
wall asparaginases of Saccharomyces cerevisiae belong to
this set. Members of this set from Acinetobacter
glutaminasificans and Pseudomonas fluorescens are
described as having both glutaminase and asparaginase
activitities. All members are homotetrameric [Energy
metabolism, Amino acids and amines].
Length = 349
Score = 77.1 bits (190), Expect = 3e-15
Identities = 68/247 (27%), Positives = 105/247 (42%), Gaps = 20/247 (8%)
Query: 151 LDSSNMCQVHWIKIANDIKEYYES--YDGFVILHGTDTLSYTASALSFMLENLGKPVIVT 208
+ S +M + +K+A I E S YDG VI HGTDTL TA L + KPV++
Sbjct: 80 VGSQDMNEEVLLKLAKGINELLASDDYDGIVITHGTDTLEETAYFLDLTV-KSDKPVVIV 138
Query: 209 GSQISIFQIRSDGVHNFIGALILAGNYDIPE-----VTVYFNHKLIRGNRTVKMSVKEFD 263
G+ + +DG N A+ +A N P+ V V N ++ G K + D
Sbjct: 139 GAMRPSTSVSADGPMNLYNAVSVAAN---PKSAGRGVLVVLNDRIASGRYVTKTNTTSLD 195
Query: 264 AFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNLN---VGILRIYPHISNHT 319
F S N L + ID + + + F V S L+ V I+ Y +
Sbjct: 196 TFKSRNQGYLGYIHNGKIDYYYPPVRKHTCDTPFSV-SNLDEPLPKVDIIYAYQNAPPLI 254
Query: 320 VRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGG-TSDTYE 378
V + + + +G++L G+G+ + + + A+ V IV S+ G T D
Sbjct: 255 VNAVLDAGAKGIVLAGVGNGSLSAAGLKVNET---AAKLGVPIVRSSRVPDGMVTPDAEP 311
Query: 379 AGKILSG 385
G I SG
Sbjct: 312 DGFIASG 318
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 74.9 bits (184), Expect = 6e-14
Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 10/173 (5%)
Query: 481 IKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVI 540
++E+ D + D R LH A S G D V L++ +VHIRD + L A+
Sbjct: 541 LEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS 600
Query: 541 ADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTP 600
A H I R+L H A +++ P GD+L AA R + ++ L G+N++ D G T
Sbjct: 601 AKHHKIFRILYHF-ASISD-PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658
Query: 601 LHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKSSE 653
L A+ ++++ VR L+ D+ N + + ++ ELL+ E
Sbjct: 659 LQVAMAEDHVDMVRLLIMNGADVDKANTD--------DDFSPTELRELLQKRE 703
Score = 34.8 bits (80), Expect = 0.15
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + D+ +KE+ G ++ D L A + +D+V+ + NG V + D
Sbjct: 629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD 688
Score = 34.8 bits (80), Expect = 0.17
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+P ++LT A+ G L+ L A ++ + DS G TPLH A + V LL
Sbjct: 522 DPNMASNLLT-VASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKH 580
Query: 620 HVDLTIENKNGQSAI 634
++ I + NG +A+
Sbjct: 581 ACNVHIRDANGNTAL 595
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 69.6 bits (170), Expect = 2e-12
Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 20/186 (10%)
Query: 459 KLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCL 518
+LK L+ A+++GD++ IK + YGAD+++ D + +H A DI+K L
Sbjct: 123 ELKTFLH-----YAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL 177
Query: 519 ENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNE------PMFLGDVLTNAA 572
E G +++DN SPLH A + I+LL G H+ N+ P+ + +A
Sbjct: 178 EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSA 237
Query: 573 ARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV-LNNNIESVRYLLSQHVDLTIENKNGQ 631
+I A IN +D G TPLH A+ +I+ + LL D++I++ G+
Sbjct: 238 IELLINN------ASINDQDID--GSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGE 289
Query: 632 SAIEVA 637
+ I+ A
Sbjct: 290 NPIDTA 295
Score = 62.3 bits (151), Expect = 3e-10
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 3/172 (1%)
Query: 479 DKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEA 538
D IK + + G D+++ D + + LH A G L+ +K E G V+I D+ P+H A
Sbjct: 105 DMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIA 164
Query: 539 VIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGL 598
+ + DII+LL GA+ + L NAA G ++ + G ++ G
Sbjct: 165 IKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF 224
Query: 599 TPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN-DIIELL 649
TPLH A+++N S LL + + ++ +G + + A + DII++L
Sbjct: 225 TPLHNAIIHN--RSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDIL 274
Score = 53.0 bits (127), Expect = 3e-07
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 43/178 (24%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A+R GD ++ +GADI+ + + L TA +G DI+K ++NGV I
Sbjct: 42 AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPC 101
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
I + D+I+ + C GI++N
Sbjct: 102 I----------EKDMIKTILDC---------------------------------GIDVN 118
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D+ T LH A+ ++ES++ L D+ IE+ NG I +A + DII+LL
Sbjct: 119 IKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 67.0 bits (164), Expect = 1e-11
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILHTACS--VGKLDIVKYCLENGVSVHIRDNYDISP 534
+ +K + YGA+++ D + L A S IV+Y L+NG +V+I+++ +
Sbjct: 85 VKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENL 144
Query: 535 LHEAV--IADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQ 592
LH + I++LL G + NA R + L SY G+ +N
Sbjct: 145 LHLYLESNKIDLKILKLLIDKGVDI------------NAKNR--VNYLLSY---GVPINI 187
Query: 593 VDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D G TPLH AV NNN E V+YLL + + NK G + + +A +I +LL
Sbjct: 188 KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244
Score = 58.5 bits (142), Expect = 6e-09
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 51/196 (26%)
Query: 445 VAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHT 504
+ K L G + P L+ + + ++ + + GA++++ + D N+LH
Sbjct: 88 IVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL 147
Query: 505 ACSVGKLDI------------------VKYCLENGVSVHIRDNYDISPLHEAVIADQHDI 546
K+D+ V Y L GV ++I+D Y +PLH AV + +
Sbjct: 148 YLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF 207
Query: 547 IRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVL 606
++ L GA N N V+ G TPLH A+L
Sbjct: 208 VKYLLDLGA---------------------------------NPNLVNKYGDTPLHIAIL 234
Query: 607 NNNIESVRYLLSQHVD 622
NNN E + LL+
Sbjct: 235 NNNKEIFKLLLNNGPS 250
Score = 50.0 bits (120), Expect = 2e-06
Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 25/165 (15%)
Query: 495 DFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLH-----EAVIADQHDIIRL 549
L+ A +D+VK L+NG ++ + +PLH + + D +I++L
Sbjct: 32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKL 91
Query: 550 LRHCGAHLTNEPMFLGDVLTNAAARGMIK-RLQSYLLA-GINLNQVDSIGLTPLHAAVLN 607
L GA++ L A ++ + YLL G N+N +S G LH + +
Sbjct: 92 LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151
Query: 608 NNIE------------------SVRYLLSQHVDLTIENKNGQSAI 634
N I+ V YLLS V + I++ G + +
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPL 196
Score = 40.0 bits (94), Expect = 0.003
Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 9/149 (6%)
Query: 510 KLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL----TNEPMFLG 565
K+ +KY + + PL+ A A D++++L GA + N L
Sbjct: 14 KVKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLH 73
Query: 566 DVLTNAAARGMIKRLQSYLLA-GINLNQVDSIGLTPLHAAVLN--NNIESVRYLLSQHVD 622
+ +K + LL G N+N D+ G+TPL A+ N+ V YLL +
Sbjct: 74 YLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGAN 133
Query: 623 LTIENKNGQSAIEVANQMQLND--IIELL 649
+ I+N +G++ + + + D I++LL
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLL 162
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 60.6 bits (146), Expect = 3e-10
Identities = 49/219 (22%), Positives = 77/219 (35%), Gaps = 28/219 (12%)
Query: 432 DAIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADI 491
L A+ L L +K K LY L + + ++ +
Sbjct: 10 LINKCFLDLLLVALLLLLSLDLSNPSDK-KLNLYLELA-LLPAASLSELLLKLIV-DRHL 66
Query: 492 SMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLR 551
+ D D R LH+A S G IVK L +G V+ +D +PLH A +
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGN--- 123
Query: 552 HCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIE 611
A+ +++ N D G TPLH A LN + +
Sbjct: 124 ------------------IEVAKLLLEAGADLD----VNNLRDEDGNTPLHWAALNGDAD 161
Query: 612 SVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
V LL D N G +A++ A + ++++LL
Sbjct: 162 IVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200
Score = 42.1 bits (98), Expect = 4e-04
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 464 LYPALFQSAVREGDIDKIKEMQNYGA---DISMTDFDRRNILHTACSVGKLDIVKYCLEN 520
L+ A EG+I+ K + GA ++ D D LH A G DIV+ LE
Sbjct: 110 LHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169
Query: 521 GVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTN 559
G + R++Y ++ L A + ++++LL G HL+
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSL 208
Score = 40.2 bits (93), Expect = 0.002
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 571 AAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNN-----IESVRYLLSQHVDLTI 625
AA++G K ++ L +G ++N D+ G TPLH A LN N IE + LL DL +
Sbjct: 80 AASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV 139
Query: 626 ---ENKNGQSAIEVANQMQLNDIIELLKSS 652
+++G + + A DI+ELL +
Sbjct: 140 NNLRDEDGNTPLHWAALNGDADIVELLLEA 169
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 62.0 bits (151), Expect = 4e-10
Identities = 47/198 (23%), Positives = 73/198 (36%), Gaps = 41/198 (20%)
Query: 478 IDKIKEMQNYGADISMTDFDRRNILHTACSVG--KLDIVKYCLENGVSVHIRDNYDISPL 535
+D IK + GAD++ D R LH S +++ L G V+ D Y ++PL
Sbjct: 97 LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPL 156
Query: 536 HE----------------AVIAD-------------QH--------DIIRLLRHCGAHLT 558
AD H I+R L G
Sbjct: 157 AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA 216
Query: 559 NEPMFLGDVLTNAAARGMIKR--LQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYL 616
M L + A KR + L+AGI++N + G TPLH A + NN + R L
Sbjct: 217 ATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRL 276
Query: 617 LSQHVDLTIENKNGQSAI 634
++ D+ + +G + +
Sbjct: 277 IALGADINAVSSDGNTPL 294
Score = 50.8 bits (122), Expect = 1e-06
Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 38/153 (24%)
Query: 479 DKIKEMQNYGADISMTDFDRRNILH---TACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
++E+ G D + TD LH T S + ++ L G+S++ R+ Y +PL
Sbjct: 203 RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPL-LIAGISINARNRYGQTPL 261
Query: 536 HEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDS 595
H A + + R R + G ++N V S
Sbjct: 262 HYAAVFNNP---RACRRL------------------------------IALGADINAVSS 288
Query: 596 IGLTPLHAAVLNNNIESVRYLLSQHVDL-TIEN 627
G TPL V NNN +VR L+++ T+
Sbjct: 289 DGNTPLSLMVRNNNGRAVRAALAKNPSAETVAA 321
Score = 48.9 bits (117), Expect = 6e-06
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 510 KLDIVKYCLENGVSVHIRDNYDISPLHEAV---IADQHDIIRLLRHCGAHLTNEPMFLGD 566
++ V+ L G V+ R Y +PLH + DI+RLL GA + N P G
Sbjct: 26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADV-NAPERCGF 84
Query: 567 V-----LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNI--ESVRYLLSQ 619
L NA +IK L + AG ++N D +G TPLH + NI + +R LL +
Sbjct: 85 TPLHLYLYNATTLDVIKLL---IKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK 141
Query: 620 HVDLTIENKNGQSAIEV 636
D+ + G + + V
Sbjct: 142 GADVNALDLYGMTPLAV 158
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 51.9 bits (125), Expect = 6e-09
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 498 RRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLL 550
R LH A G+L++VKY LE GV ++ D + LH A ++++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 50.3 bits (121), Expect = 3e-08
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 567 VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLL 617
L AA G ++ ++ L G+++N+ D G T LH A N N+E ++ LL
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 35.7 bits (83), Expect = 0.003
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
G T LH A ++ +E V+YLL + VD+ +++G +A+ +A
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIA 41
Score = 31.4 bits (72), Expect = 0.10
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 465 YPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKY 516
AL + A G ++ +K + G DI+ TD D LH A G L+++K
Sbjct: 2 RTALHK-AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKL 52
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 48.1 bits (115), Expect = 1e-07
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 588 INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
I+LN D G TPLH A +E V++LL VDL + + +G +A+++A
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 41.2 bits (97), Expect = 4e-05
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 485 QNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEA 538
++ D++ TD + LH A G L++V++ L+ GV +++RD+ ++ L A
Sbjct: 3 EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 27.7 bits (62), Expect = 3.0
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTA 505
A + G ++ ++ + G D+++ D D L A
Sbjct: 23 AAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 52.4 bits (125), Expect = 6e-07
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 3/164 (1%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILHTACSVGKL-DIVKYCLENGVSVHIRDNYDISPL 535
D + I+ + GAD++ D LH A ++ + DIV LE G +V+ RD D +P+
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379
Query: 536 HEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNA-AARGMIKRLQSYLLAGINLNQVD 594
H A + + II L GA + +G L A +++ + G N+N +
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN 439
Query: 595 SIGLTPLHAAVLNN-NIESVRYLLSQHVDLTIENKNGQSAIEVA 637
TPLH A N ++ + LL D+ N Q + +A
Sbjct: 440 KDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483
Score = 40.8 bits (95), Expect = 0.002
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 461 KKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLEN 520
+ I Y L + +++ ++ + + GAD++ D +H A G +V L
Sbjct: 141 ESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSY 200
Query: 521 GVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRL 580
G V+I D+S L AV + D I+ + +++ + L + N + L
Sbjct: 201 GADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRN-------EDL 253
Query: 581 QSYLL---AGINLNQVDSIGLTPLHAAVLNNNIES-VRYLLSQHVDLTIENKNGQSAI 634
++ LL AG ++N +D TPLH A ++ V LL + D+ +N G++ +
Sbjct: 254 ETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311
Score = 35.4 bits (81), Expect = 0.092
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 435 HNNELDLAAAVAK-TLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEM-QNYGADIS 492
N +D+ +A+ LH G + + I + A+ Q A++ ID ++E+ Q I
Sbjct: 12 RGNCIDILSAIDNYDLHKHGANQCEN-ESIPFTAIHQ-ALQLRQIDIVEEIIQQNPELIY 69
Query: 493 MTDFDRRNILHTACSVGK-LDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLR 551
+TD + LHT C + +DIV +S+ + + + + ++I ++H +L
Sbjct: 70 ITDHKCHSTLHTICIIPNVMDIV-------ISLTLDCDIILDIKYASIILNKH---KLDE 119
Query: 552 HCGAHLTNEPMFLGDVLTNAAARGM-----IK-RLQS--------YLLAGINLNQVDSIG 597
C H+ E + D+ + + IK R+Q L G ++N D
Sbjct: 120 AC-IHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYC 178
Query: 598 LTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
+TP+H A N + V LLS D+ I + S +E A
Sbjct: 179 ITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECA 218
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 50.7 bits (121), Expect = 2e-06
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 476 GDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
GD + + GAD + D+D R LH AC+ G + +V+ LE G + D +PL
Sbjct: 93 GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPL 152
Query: 536 HEAVIADQHDIIRLL-RHCGAH 556
A ++++LL RH H
Sbjct: 153 ELAEENGFREVVQLLSRHSQCH 174
Score = 44.5 bits (105), Expect = 1e-04
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
L G + N D G TPLH A N +++ VR LL D T+ +K+G++ +E+A +
Sbjct: 102 LTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFR 161
Query: 644 DIIELLKS 651
++++LL
Sbjct: 162 EVVQLLSR 169
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 48.8 bits (116), Expect = 6e-06
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 505 ACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFL 564
A G+LDI + L+ G++ + ISP+ A+ + I+LL GA + +
Sbjct: 9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQV-DSIGLTPLHAAVLNNNIESVRYLLSQHVDL 623
L +A G +K ++ L G + V G+TPLH A + ++ ++ L+++ D
Sbjct: 69 ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
I N + S + +A M IELL
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELL 154
Score = 47.7 bits (113), Expect = 1e-05
Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 2/156 (1%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI-LHTACSVGKLDIVKYCLENGVSVHIRDNY 530
AV EGD+ ++E+ + G + LH A + KLDI+K + G I +
Sbjct: 75 AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD 134
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
SPLH AV+ I LL A L E L A A+G I + L +G N+
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194
Query: 591 NQVDSIG-LTPLHAAVLNNNIESVRYLLSQHVDLTI 625
+ G + L A+ NN I+ VR + + D I
Sbjct: 195 DYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230
Score = 40.0 bits (93), Expect = 0.003
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 6/184 (3%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGV---SVHIRD 528
A++ D + IK + +GA + D + LH A G + V+ L+ G V +D
Sbjct: 42 AMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD 101
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGI 588
++PLH A I + DI++LL GA L A G IK ++ +
Sbjct: 102 G--MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ-SAIEVANQMQLNDIIE 647
L+ D G TPL A+ +I + LL ++ KNG +A+ A + DI+
Sbjct: 160 CLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219
Query: 648 LLKS 651
L
Sbjct: 220 LFIK 223
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 46.4 bits (110), Expect = 4e-05
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAV-IADQHD 545
YGA++++ D + LH A IV LENG S RD +PLH +V +D
Sbjct: 190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYD 249
Query: 546 IIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
I++LL G + + LG +++ + ++L+ L G ++N ++S LTPL +AV
Sbjct: 250 ILKLLLEHGVDVNAKSYILGLTALHSSIKSE-RKLKLLLEYGADINSLNSYKLTPLSSAV 308
Query: 606 L 606
Sbjct: 309 K 309
Score = 45.6 bits (108), Expect = 6e-05
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 481 IKEMQNYGADISMTDFDRRNI-LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAV 539
K + +YGADI+M D + N LH A + + L G +V+I D + SPLH AV
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209
Query: 540 IADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGM-IKRLQSYLLAGINLNQVDSI-G 597
I+ +L GA L + L+ L G+++N I G
Sbjct: 210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269
Query: 598 LTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
LT LH+++ + ++ LL D+ N + + A
Sbjct: 270 LTALHSSI--KSERKLKLLLEYGADINSLNSYKLTPLSSA 307
Score = 32.9 bits (75), Expect = 0.57
Identities = 51/207 (24%), Positives = 76/207 (36%), Gaps = 41/207 (19%)
Query: 478 IDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHE 537
I+ I +NY S+ F LH A LD+VK L G +V+ D+ D++PLH
Sbjct: 20 IEYIDHTENYSTSASLIPFIP---LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHI 76
Query: 538 AVIADQ----HDIIRLLRHCGAHLT----NEPMFLGDV------LTNAAAR--------- 574
++IR + C T + +V LTN
Sbjct: 77 ICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYI 136
Query: 575 -----------GMIKRLQSYLLAGINLNQVD-SIGLTPLHAAVLNNNIESVRYLLSQHVD 622
+ K L SY G ++N D G T LH A N + LLS +
Sbjct: 137 DKKSKDDIIEAEITKLLLSY---GADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN 193
Query: 623 LTIENKNGQSAIEVANQMQLNDIIELL 649
+ I +K S + A + I+ +L
Sbjct: 194 VNIPDKTNNSPLHHAVKHYNKPIVHIL 220
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 46.0 bits (109), Expect = 5e-05
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 24/185 (12%)
Query: 484 MQNYGADISMTDFDRRNILH----TACSVGKLDIVKYCLENGVSVHIRDN-YDISPLH-- 536
M GAD ++ D D +L + + ++I+K LE GV ++ +N LH
Sbjct: 131 MIENGADTTLLDKDGFTMLQVYLQSNHHI-DIEIIKLLLEKGVDINTHNNKEKYDTLHCY 189
Query: 537 --EAVIADQHDIIRLLRHCG--------AHLTNEPMFLGDVLTNAAARGMIKRLQSYLLA 586
+ DI++L G +H +L +L + + K + ++ +
Sbjct: 190 FKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDN--KRFKKNILDFIFS 247
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQS----AIEVANQMQL 642
I++NQVD +G PL+ +V +NN + YLL D+ I + G + A E ++
Sbjct: 248 YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIF 307
Query: 643 NDIIE 647
N I+
Sbjct: 308 NSILN 312
Score = 32.1 bits (73), Expect = 1.1
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 545 DIIRLLRHCGAHLT------NEPMFLGDVLTNAAA-RGMIKRLQSYLLAGINLNQVDSIG 597
DI++L + GA++ + P L +L+N + M+ ++ + G ++N+ +S G
Sbjct: 52 DIVKLFINLGANVNGLDNEYSTP--LCTILSNIKDYKHMLDIVKILIENGADINKKNSDG 109
Query: 598 LTPLHAAVLN---NNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN---DIIELL 649
TPL+ + N NN+E + +++ D T+ +K+G + ++V Q + +II+LL
Sbjct: 110 ETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 40.2 bits (95), Expect = 5e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENK 628
G TPLH A N ++E V+ LL D+ +K
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 38.3 bits (90), Expect = 3e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
D LH A G L++VK LE G V+ RD
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 533 SPLHEAVIADQHDIIRLLRHCGAHL 557
+PLH A ++++LL GA +
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADV 28
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 35.3 bits (82), Expect = 0.003
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTI 625
G TPLH A N N+E V+ LL D+
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADINA 30
Score = 33.8 bits (78), Expect = 0.009
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVHI 526
D LH A G L++VK LE+G ++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADINA 30
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 40.4 bits (95), Expect = 0.003
Identities = 53/261 (20%), Positives = 80/261 (30%), Gaps = 54/261 (20%)
Query: 426 RGELSTDAIHNNELDLA---------AAVAKTLHLSGRQELNKLKKILYPALFQSAVREG 476
R L AI N L+L AV TL L+ + A+ +
Sbjct: 53 RSALFVAAIENENLELTELLLNLSCRGAVGDTL-------LHAISLEYVDAVEAILLHLL 105
Query: 477 DIDKIKEMQNYGADISMTDFDR-RNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPL 535
+ D ++F LH A +IVK LE G SV R D
Sbjct: 106 AAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGD---- 161
Query: 536 HEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLA-GINLNQVD 594
V + D P+ NAAA + + L ++ D
Sbjct: 162 -FFVKSQGVDSFYHGES--------PL-------NAAACLGSPSIVALLSEDPADILTAD 205
Query: 595 SIGLTPLHAAVLNN-----NIE---SVRYLLSQHVDLT--------IENKNGQSAIEVAN 638
S+G T LH V+ N E + +D I N G + +++A
Sbjct: 206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAA 265
Query: 639 QMQLNDIIELLKSSETKSKVH 659
+ + L + + K K
Sbjct: 266 KEGRIVLFRLKLAIKYKQKKF 286
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 34.5 bits (80), Expect = 0.006
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTI 625
G TPLH A N N+E V+ LL + D+
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 31.8 bits (73), Expect = 0.049
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVHI 526
D R LH A G L++VK L+ G ++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 25.6 bits (57), Expect = 7.8
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 530 YDISPLHEAVIADQHDIIRLLRHCGA 555
+PLH A ++++LL GA
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGA 26
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 36.6 bits (85), Expect = 0.038
Identities = 40/187 (21%), Positives = 76/187 (40%), Gaps = 51/187 (27%)
Query: 478 IDKIKEMQNYGADISMTDFDRRNILHTA---------CSVGKLDIVKYCLENGVSVHIRD 528
D IK + ++G ++ F++ ++ V + ++KY ++ GV++ +
Sbjct: 160 KDVIKILLSFGVNL----FEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNN 215
Query: 529 NYDISPLHEAVIA---DQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL 585
N E+V+ D + I L + K L +++L
Sbjct: 216 N-----GSESVLESFLDNNKI--LSKKE-----------------------FKVL-NFIL 244
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQS----AIEVANQMQ 641
I +N+ D G PL + +N E+ YLL D+ +K+G + AI+ N
Sbjct: 245 KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDM 304
Query: 642 LNDIIEL 648
LN I++L
Sbjct: 305 LNRILQL 311
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 34.5 bits (79), Expect = 0.062
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 577 IKRLQSYLLAGINLNQVDSI-GLTPLHAAVLNNNIESVRYLLSQ-HVDLTIENKNGQSAI 634
++L+ + G ++N + + G TPLH AV N E +L +Q V++ I N ++
Sbjct: 71 QEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY 130
Query: 635 EVANQMQLNDIIELLKSSETKSKV 658
VA + ++ +L++ + KV
Sbjct: 131 YVACERHDAKMMNILRAKGAQCKV 154
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 35.3 bits (81), Expect = 0.11
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 11/153 (7%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILHTACSVGKL--DIVKYCLENGVSVHIRDNYDISP 534
DID ++ + N G ++++ + LHT G + ++K +E G + ++ +SP
Sbjct: 191 DIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSP 250
Query: 535 LHEAVI-ADQHD--IIRLLRHC--GAHLTNEPMFLGDVLTNAAARGM-IKRLQSYLLAGI 588
+ +I D + I + G + N PM L +T AR + I + S+L G+
Sbjct: 251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT--LARNIDISVVYSFLQPGV 308
Query: 589 NLNQVDSIGLTPLHAAVLNNNIE-SVRYLLSQH 620
L+ DS G T LH +L +NI + LL ++
Sbjct: 309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEY 341
Score = 34.5 bits (79), Expect = 0.20
Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 52/172 (30%)
Query: 501 ILHTACSVGK---LDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHL 557
ILH+ ++ + + +V L+ GV +H +D+ + LH+ + LRH
Sbjct: 284 ILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYI----------LRH----- 328
Query: 558 TNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV------------ 605
++ T+ +IK L Y G +LN+ D+IG T LH +
Sbjct: 329 --------NISTD-----IIKLLHEY---GNDLNEPDNIGNTVLHTYLSMLSVVNILDPE 372
Query: 606 LNNNI--ESVRYLLSQHVDLTIENKNG----QSAIEVANQMQLNDIIELLKS 651
+N+I + ++ L+S D+T N G S I A DII+ L S
Sbjct: 373 TDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLIS 424
Score = 29.5 bits (66), Expect = 6.5
Identities = 40/209 (19%), Positives = 79/209 (37%), Gaps = 51/209 (24%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILHTACSVG--------------KLDIVKYCLENGV 522
D IK + YG D++ D +LHT S+ +LD+++ + G
Sbjct: 331 STDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA 390
Query: 523 SVHIRDNYDISPLHEAVIADQ----HDII--------------RLLRHCGAHLTNEPMFL 564
+ + +PL + Q +DII R+L+ + + P +
Sbjct: 391 DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCII 450
Query: 565 GDVLT--NAAARGMIKRLQSY------------LLAGINLNQVDSIGLTPLHAAVLNNN- 609
++ N + Y ++ N ++ G+TPLH +++++
Sbjct: 451 HHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTN 510
Query: 610 ----IESVRYLLSQHVDLTIENKNGQSAI 634
++S YLLS ++ I KNG + +
Sbjct: 511 ANIVMDSFVYLLSIQYNINIPTKNGVTPL 539
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 33.3 bits (76), Expect = 0.29
Identities = 15/63 (23%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILH---TACSVGKLDIVKYCLENGVSVHIRDNYDIS 533
+ + +K + + G+ I+ D D +N+LH +V +++++K +++GVS +D + +
Sbjct: 102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNV-RINVIKLLIDSGVSFLNKDFDNNN 160
Query: 534 PLH 536
L+
Sbjct: 161 ILY 163
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 33.8 bits (77), Expect = 0.35
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
++N +D G T LH AV N V LL D+ I + NG + I +A N IEL
Sbjct: 444 DINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRN--IEL 501
Query: 649 LK 650
LK
Sbjct: 502 LK 503
Score = 30.4 bits (68), Expect = 3.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
Y DI+M D +LH A K +V LE+G V+IR N
Sbjct: 441 YLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSN 483
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 32.3 bits (73), Expect = 0.47
Identities = 28/129 (21%), Positives = 52/129 (40%), Gaps = 12/129 (9%)
Query: 500 NILHTACSVGKLDIVK----YCLENGVSVHIRDNYDISPLHEAVIADQHD------IIRL 549
N H A G DI+ + + + + D + + A++H+ II
Sbjct: 23 NFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDH 82
Query: 550 LRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL--AGINLNQVDSIGLTPLHAAVLN 607
L GA + + M GD + AA L +L GI+L+ ++ +P A+ N
Sbjct: 83 LIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN 142
Query: 608 NNIESVRYL 616
++ ++ L
Sbjct: 143 EDVAMMQIL 151
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 31.5 bits (71), Expect = 1.2
Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 36/164 (21%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVHIR----DNYDISPLHEAVIADQHDIIRLLRH 552
NIL+++ DI+ L+ G +N +PL A+ D D +LL
Sbjct: 32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIR 91
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
GA + R +TPL+ +VL+ ++
Sbjct: 92 YGAD--------------------VNRYAEEAK------------ITPLYISVLHGCLKC 119
Query: 613 VRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKSSETKS 656
+ LLS D+ I+ + + IE+A + N + ++ +E +
Sbjct: 120 LEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEISN 163
>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional.
Length = 895
Score = 30.8 bits (70), Expect = 2.9
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 9/67 (13%)
Query: 300 SQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSN----RSDLIDELRLA 355
QLNLN+ RI S T+ +++ +G + G+ P+ R L + LR
Sbjct: 726 DQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPI-----GDNPARIEQIREGLTEALRNP 780
Query: 356 SDRNVII 362
D II
Sbjct: 781 DDYPTII 787
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 30.3 bits (68), Expect = 3.1
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVH--IRDNY---DISPLHEAVIA 541
Y DI+ D R +L+ A G +D+V + LENG +V+ + + Y D++ +VIA
Sbjct: 210 YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIA 269
Query: 542 DQHDIIRLL 550
+ +++L
Sbjct: 270 RRETHLKIL 278
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 30.4 bits (68), Expect = 3.4
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 481 IKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVI 540
++E+ + G + TD D LH A + IV L +G + D +PL+
Sbjct: 55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSG 114
Query: 541 ADQHDI--IRLLRHCGAHLTN--EPMFLGDVL--TNAAARGMIKRLQSYLLAGINLNQVD 594
D I I LL GA + N + G +L T+ + R + K++ S G VD
Sbjct: 115 TDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSER-VFKKIMS---IGFEARIVD 170
Query: 595 SIGLTPLHAAVLNNN--IESVRYLLSQHVDLTIENKNGQSAIEV--ANQMQLNDIIELLK 650
G +H ++++N ++ +++ + + + +G + + + + ++ DII LL
Sbjct: 171 KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLL 230
Query: 651 SSETKSK 657
S +K
Sbjct: 231 PSTDVNK 237
>gnl|CDD|119337 cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia
marcescens is a beta-N-1,4-acetylhexosaminidase with a
glycosyl hydrolase family 20 (GH20) domain that
hydrolyzes the beta-1,4-glycosidic linkages in oligomers
derived from chitin. Chitin is degraded by a two step
process: i) a chitinase hydrolyzes the chitin to
oligosaccharides and disaccharides such as
di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase
then further degrades these oligomers into monomers. The
GH20 hexosaminidases are thought to act via a catalytic
mechanism in which the catalytic nucleophile is not
provided by solvent or the enzyme, but by the substrate
itself.
Length = 445
Score = 30.0 bits (68), Expect = 4.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 336 YGSGNFPSN-------RSDLIDELRLASDRNVIIV 363
GSG +N R+D I+ L+ A R++ ++
Sbjct: 80 LGSGPDTNNSGSGYYSRADYIEILKYAKARHIEVI 114
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA;
Provisional.
Length = 919
Score = 29.8 bits (68), Expect = 5.9
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 616 LLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
LL + V+ + +G A+E A Q D+I
Sbjct: 686 LLEEQVEHVVLCDSGHQAVEQAKQRPF-DLI 715
>gnl|CDD|222959 PHA02999, PHA02999, Hypothetical protein; Provisional.
Length = 382
Score = 29.0 bits (65), Expect = 8.2
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 18/95 (18%)
Query: 437 NELDLAAAVAKTLHLSGRQEL-NKLKKILYPALFQSAVR-------EGD---IDKIKEMQ 485
N L V + L +L K+ K + LF++ E + +D++K +
Sbjct: 276 NVDTLKQLVESSFSL---VDLTEKITKKTFRNLFKNGESHKYRCYAENNFIGLDQLKLIN 332
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLEN 520
+ D RN++ AC ++ V LEN
Sbjct: 333 MCNKIVLAVDPVDRNVVFNAC----IETVNKYLEN 363
>gnl|CDD|236980 PRK11780, PRK11780, isoprenoid biosynthesis protein with
amidotransferase-like domain; Provisional.
Length = 217
Score = 28.6 bits (65), Expect = 9.6
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 32/74 (43%)
Query: 530 YDISPLHEAVIA------------------DQHDIIRLLRHCGAHLTNEPMFLG---DVL 568
YD S +HEAV+ Q +I HLT E M G +VL
Sbjct: 14 YDGSEIHEAVLTLLALDRAGAEAVCFAPDIPQLHVIN-------HLTGEEM--GETRNVL 64
Query: 569 TNAA--ARGMIKRL 580
+A ARG IK L
Sbjct: 65 VESARIARGEIKDL 78
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.382
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 33,293,747
Number of extensions: 3321931
Number of successful extensions: 3275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3118
Number of HSP's successfully gapped: 116
Length of query: 659
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 556
Effective length of database: 6,369,140
Effective search space: 3541241840
Effective search space used: 3541241840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)