RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9757
(659 letters)
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
2p2n_A 3ntx_A* 2ocd_A
Length = 358
Score = 436 bits (1124), Expect = e-149
Identities = 160/374 (42%), Positives = 215/374 (57%), Gaps = 26/374 (6%)
Query: 60 RRASLTLNSSEDRLESKVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYD 119
+S + + + V YTGGTIGM+ +EQG P S L ++ P +
Sbjct: 9 HHSSGLVPRGSHMQKKSIYVAYTGGTIGMQRSEQG-YIPVSGHLQRQLALMPEFHRPEM- 66
Query: 120 VCKTQDGNVLVLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFV 179
+ + EYTPL+DSS+M W IA DIK +Y+ YDGFV
Sbjct: 67 --------------------PDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFV 106
Query: 180 ILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPE 239
ILHGTDT++YTASALSFMLENLGKPVIVTGSQI + ++RSDG N + AL +A NY I E
Sbjct: 107 ILHGTDTMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINE 166
Query: 240 VTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQ 299
VT++FN++L RGNRT K FDAF SPN P L + G+ I + + V
Sbjct: 167 VTLFFNNRLYRGNRTAKAHADGFDAFASPNLPPLLEAGIHIRRL-NTPPAPHGEGELIVH 225
Query: 300 SQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRN 359
+G++ IYP IS VR+F++ P++ +IL +YG GN P N+ + EL+ ASDR
Sbjct: 226 PITPQPIGVVTIYPGISADVVRNFLRQPVKALILRSYGVGNAPQNK-AFLQELQEASDRG 284
Query: 360 VIIVNCSQCSRGGTS-DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKK 418
+++VN +QC G + Y G L+ GVI G DMT EA LTKL Y+LS+ L + +
Sbjct: 285 IVVVNLTQCMSGKVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQE-LDTETIR 343
Query: 419 DIMMTNIRGELSTD 432
M N+RGEL+ D
Sbjct: 344 KAMSQNLRGELTPD 357
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus
horikoshii} PDB: 1wnf_A
Length = 328
Score = 415 bits (1068), Expect = e-141
Identities = 102/356 (28%), Positives = 167/356 (46%), Gaps = 33/356 (9%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVK 135
++L+L GGTI E+G + S KI + +
Sbjct: 2 RILILGMGGTIASVKGERGYESALS---VSKILKLAGISSEAK----------------- 41
Query: 136 DTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASALS 195
+ + +DS+ + W ++A +I++ YDG VI HGTDT++Y+AS LS
Sbjct: 42 ------IEARDLMN-VDSTLIQPSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLS 94
Query: 196 FMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTV 255
FML N P+++TGS + I + SD N AL I + + FN K++ G R
Sbjct: 95 FMLRNPPIPIVLTGSMLPITEKNSDAPFNLRTALEFVK-LGIRGIYIAFNGKVMLGVRAS 153
Query: 256 KMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYPHI 315
K+ FDAF+S N+PN+A++ D +F + V ++++ P +
Sbjct: 154 KIRSMGFDAFESINYPNVAEIK--DDKLRILHIPDFYGDEFFSDIKYEPKVLVIKLIPGL 211
Query: 316 SNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGG-TS 374
S VR ++ +G+IL YG G P +DL + + + + + +V +Q G
Sbjct: 212 SGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVS-SISKRIPVVLTTQAIYDGVDL 270
Query: 375 DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELS 430
Y+ G+I GVI DMT EA +TKL ++L + +++ K +M NI GEL+
Sbjct: 271 QRYKVGRIALEAGVIPAGDMTKEATITKLMWILGHT-KNIEEVKQLMGKNITGELT 325
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure,
asparaginase 1 family, GATD subfamily, lyase; 3.00A
{Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Length = 438
Score = 390 bits (1005), Expect = e-130
Identities = 107/366 (29%), Positives = 184/366 (50%), Gaps = 41/366 (11%)
Query: 76 KVLVLYTGGTIGM-EDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRV 134
+V ++ TGGTI D E GA+ P+ +++ + LP +
Sbjct: 93 EVTIIGTGGTIASRIDYETGAVYPAFTA--EELAKA--------------------LPEI 130
Query: 135 KDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYD-GFVILHGTDTLSYTASA 193
+ V + + S +M HW+KIA+++ + S D G V+ HGTDT+ YTA+A
Sbjct: 131 FEVANV---KPKLLFNIFSEDMKPKHWVKIAHEVAKALNSGDYGVVVAHGTDTMGYTAAA 187
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKL----- 248
LSFML NLGKPV++ G+Q S + SD N I ++ +A + ++ EV V + +
Sbjct: 188 LSFMLRNLGKPVVLVGAQRSSDRPSSDAAMNLICSVRMATS-EVAEVMVVMHGETGDTYC 246
Query: 249 --IRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVN-MKSIFRSSTIKKFDVQSQLNLN 305
RG + KM DAF S N +AK+ ++ ++ +R + ++ +V ++
Sbjct: 247 LAHRGTKVRKMHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVEVDDKIEEK 306
Query: 306 VGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNC 365
V ++++YP IS+ + + +G+++ G G+ P +D+I + A + V +
Sbjct: 307 VALVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTP---NDIIPSIERAVEEGVAVCMT 363
Query: 366 SQCSRGGTS-DTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTN 424
SQC G + + Y G+ L GVI DM PE A KL +VL + L++ + +M+TN
Sbjct: 364 SQCIYGRVNLNVYSTGRKLLKAGVIPCEDMLPETAYVKLMWVLGHT-QNLEEVRKMMLTN 422
Query: 425 IRGELS 430
GE++
Sbjct: 423 YAGEIT 428
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA
complex; 3.15A {Methanothermobacterthermautotrophicus}
SCOP: b.38.3.1 c.88.1.1
Length = 435
Score = 379 bits (974), Expect = e-126
Identities = 99/383 (25%), Positives = 163/383 (42%), Gaps = 39/383 (10%)
Query: 57 DSDRRASLTLNSSEDRLESKVLVLYTGGTIGM-EDNEQGALAPSSKPLTDKIRENPLLYD 115
R + ++ED V ++ TGGT+ D GA+ P+ D +R NP L D
Sbjct: 73 SEPRIELPPVEAAEDPELPDVSIISTGGTVASIIDYRTGAVHPAFTA-DDLLRANPELLD 131
Query: 116 RHYDVCKTQDGNVLVLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKE-YYES 174
+ ++ + S NM +W++ A + +
Sbjct: 132 ---------------IANIR---------GRAVFNILSENMKPEYWVETARAVYGEIKDG 167
Query: 175 YDGFVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGN 234
DG V+ HGTDT+ YT++ALSFML PV+ TG+Q S + SD N ++ A +
Sbjct: 168 ADGVVVAHGTDTMHYTSAALSFMLRT-PVPVVFTGAQRSSDRPSSDASLNIQCSVRAATS 226
Query: 235 YD------IPEVTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIF 288
+ + L RG + KM D F S N LA+V ++ +
Sbjct: 227 EIAEVTVCMHATMDDLSCHLHRGVKVRKMHTSRRDTFRSMNALPLAEVTPDGIKILEENY 286
Query: 289 RSSTIKKFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDL 348
R + ++ ++ V ++ YP IS ++ + G+++ G G+ P L
Sbjct: 287 RKRGSDELELSDRVEERVAFIKSYPGISPDIIKWHLDEGYRGIVIEGTGLGHCP---DTL 343
Query: 349 IDELRLASDRNVIIVNCSQCSRGGTS-DTYEAGKILSGIGVINGYDMTPEAALTKLSYVL 407
I + A D V + SQC G + + Y G+ L GVI DM PE A K+ +VL
Sbjct: 344 IPVIGEAHDMGVPVAMTSQCLNGRVNMNVYSTGRRLLQAGVIPCDDMLPEVAYVKMCWVL 403
Query: 408 SKSELTLQQKKDIMMTNIRGELS 430
++ + +++M NI GE++
Sbjct: 404 GQT-DDPEMAREMMRENIAGEIN 425
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A
{Wolinella succinogenes} SCOP: c.88.1.1
Length = 330
Score = 243 bits (623), Expect = 3e-75
Identities = 77/356 (21%), Positives = 145/356 (40%), Gaps = 39/356 (10%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLV--LPR 133
+V +L TGGTI + S+ +T + L+ +P
Sbjct: 5 QVTILATGGTIAGSGESSVKSSYSAGAVT---------------------VDKLLAAVPA 43
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYY--ESYDGFVILHGTDTLSYTA 191
+ D + K + + + S M W+K+A + E + + +I HGTDT+ TA
Sbjct: 44 INDLATI--KGEQISSI-GSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETA 100
Query: 192 SALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYDI--PEVTVYFNHKLI 249
L+ +++ KPV++ G+ + +DG N A+ +A N V + N ++
Sbjct: 101 FFLNLTVKS-QKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIH 159
Query: 250 RGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL-NVG 307
K++ +AF SPN + V ++ +S+ + +FD+ L V
Sbjct: 160 AAREATKLNTTAVNAFASPNTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEELPRVD 219
Query: 308 ILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQ 367
IL +P ++ V + +Q+ +G+I G+GN + L A+ V++ S+
Sbjct: 220 ILYAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPF---PLTQNALEKAAKSGVVVARSSR 276
Query: 368 CSRGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMT 423
G T+ E +G + + P+ A L L+K+ + + I T
Sbjct: 277 VGSGSTTQEAEVD--DKKLGFVATESLNPQKARVLLMLALTKT-SDREAIQKIFST 329
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison
hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB:
3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Length = 326
Score = 242 bits (621), Expect = 6e-75
Identities = 81/354 (22%), Positives = 138/354 (38%), Gaps = 37/354 (10%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLV--LPR 133
+ +L TGGTI + + + LV +P+
Sbjct: 3 NITILATGGTIAGGGDSATKSNYTVGKVG---------------------VENLVNAVPQ 41
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASA 193
+KD V K + + S +M W+ +A I + DGFVI HGTDT+ TA
Sbjct: 42 LKDIANV--KGEQVVNI-GSQDMNDNVWLTLAKKINTDCDKTDGFVITHGTDTMEETAYF 98
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIRG 251
L + KPV++ G+ + +DG N A++ A + V V N ++ G
Sbjct: 99 LDLTV-KCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDG 157
Query: 252 NRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL-NVGIL 309
K + + F S N+ L + ID + ++ FDV L VGI+
Sbjct: 158 RDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNELPKVGIV 217
Query: 310 RIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCS 369
Y + S+ ++ + + +G++ G+GN + D L A+ +V S+
Sbjct: 218 YNYANASDLPAKALVDAGYDGIVSAGVGNGNLY---KSVFDTLATAAKTGTAVVRSSRVP 274
Query: 370 RGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMT 423
G T T +A + G + + P+ A L L+++ QQ + I
Sbjct: 275 TGAT--TQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQT-KDPQQIQQIFNQ 325
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for
structural genomics of infec diseases, csgid,
alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni
subsp}
Length = 334
Score = 234 bits (598), Expect = 1e-71
Identities = 82/356 (23%), Positives = 150/356 (42%), Gaps = 40/356 (11%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLV--LPR 133
++ +L TGGTI + A + D +VL+ +P+
Sbjct: 10 RIAILGTGGTIAGFIDSTIATTGYAAG--------------------AIDIDVLIKAVPQ 49
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYES-YDGFVILHGTDTLSYTAS 192
++D + + + DSSNMC W+++A I + + DG VI HGTDT+ TA
Sbjct: 50 IRDLADI--SWEQIANI-DSSNMCDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETAY 106
Query: 193 ALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIR 250
L+ +++ KPV++ G+ I +DG N A+ L N + V V N K++
Sbjct: 107 FLNLTIKS-DKPVVLVGAMRPSTAISADGPKNLYNAVALVVNKEAKNKGVMVAINDKILS 165
Query: 251 GNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL-NVGI 308
VK DAF SP+F +L + + I + FDV +L V I
Sbjct: 166 ARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVIKAHTKNAPFDVSKLTSLPKVDI 225
Query: 309 LRIYPHISNHT-VRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQ 367
L Y + + ++ + +G+++ G+G+ + D L+ + + +V S+
Sbjct: 226 LYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIH---KNQKDVLKELLKKGLKVVVSSR 282
Query: 368 CSRGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMT 423
G + + +G I+ D+ P+ A L L+K+ ++ ++ +
Sbjct: 283 VVAGCVAVSDS----DEKLGFISAEDLNPQKARVLLMLALTKT-SDPKKIQEYFLK 333
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Length = 332
Score = 231 bits (592), Expect = 1e-70
Identities = 73/344 (21%), Positives = 133/344 (38%), Gaps = 40/344 (11%)
Query: 76 KVLVLYTGGTIGM--EDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPR 133
+ +L TGGTI D G+ + + ++ P L ++ + Q N+
Sbjct: 7 TIALLATGGTIAGSGVDASLGSYKSGELGVKELLKAIPSL-NKIARIQGEQVSNI----- 60
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYE--SYDGFVILHGTDTLSYTA 191
S +M + W K+A +E + G VI HGTDTL +A
Sbjct: 61 ------------------GSQDMNEEIWFKLAQRAQELLDDSRIQGVVITHGTDTLEESA 102
Query: 192 SALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLI 249
L+ +L + KPV++ G+ + + +DG N A+ +A N V V + +
Sbjct: 103 YFLNLVLHS-TKPVVLVGAMRNASSLSADGALNLYEAVSVAVNEKSANKGVLVVMDDTIF 161
Query: 250 RGNRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL--NV 306
VK F + N + V M+ + + +T +F + V
Sbjct: 162 SVREVVKTHTTHVSTFKALNSGAIGSVYYGKTRYYMQPLRKHTTESEFSLSQLKTPLPKV 221
Query: 307 GILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCS 366
I+ + ++ ++ + S +GV++ G+GN + + ++ AS V+IV S
Sbjct: 222 DIIYTHAGMTPDLFQASLNSHAKGVVIAGVGNGNVS---AGFLKAMQEASQMGVVIVRSS 278
Query: 367 QCSRGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKS 410
+ GG G I ++ P+ A L L+K+
Sbjct: 279 RVGSGG---VTSGEIDDKAYGFITSDNLNPQKARVLLQLALTKT 319
>1o7j_A L-asparaginase; atomic resolution, hydrolase; 1.0A {Erwinia
chrysanthemi} SCOP: c.88.1.1 PDB: 1hfj_A 1hfk_A* 1hg0_A
1hg1_A 1hfw_A* 1jsr_A* 1jsl_A 2gvn_A 1zcf_A 2hln_A*
2jk0_A
Length = 327
Score = 223 bits (571), Expect = 1e-67
Identities = 72/354 (20%), Positives = 135/354 (38%), Gaps = 39/354 (11%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVK 135
+++L TGGTI + + L+ +P VK
Sbjct: 6 NIVILATGGTIAGSAATGTQTTGYKAG---ALGVDTLINA---------------VPEVK 47
Query: 136 DTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEY--YESYDGFVILHGTDTLSYTASA 193
V K +++ + S NM +K++ + E + DG VI HGTDT+ +A
Sbjct: 48 KLANV--KGEQFSNM-ASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYF 104
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIRG 251
L +++ KPV+ + I +DG N + A+ +AG+ V V N ++
Sbjct: 105 LHLTVKS-DKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVINDRIGSA 163
Query: 252 NRTVKMSVKEFDAFDSPNFPNLAKV-GLTIDVNMKSIFRSSTIKKFDVQSQLNL-NVGIL 309
K + D F + L + G I + +T FDV+ +L V IL
Sbjct: 164 RYITKTNASTLDTFRANEEGYLGVIIGNRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDIL 223
Query: 310 RIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCS 369
Y + + +Q ++G++ G+G+ I +R A ++ V+++ ++
Sbjct: 224 YGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVS---VRGIAGMRKALEKGVVVMRSTRTG 280
Query: 370 RGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMT 423
G E ++S + P A L L+++ + ++ T
Sbjct: 281 NGIVPPDEELPGLVSD-------SLNPAHARILLMLALTRT-SDPKVIQEYFHT 326
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A
{Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A*
3pga_1
Length = 337
Score = 223 bits (572), Expect = 1e-67
Identities = 79/359 (22%), Positives = 140/359 (38%), Gaps = 44/359 (12%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVK 135
V++L TGGTI A K+ + L+ +P +
Sbjct: 11 NVVILATGGTIAGAGASAANSATYQAA---KVGVDKLIAG---------------VPELA 52
Query: 136 DTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYES--YDGFVILHGTDTLSYTASA 193
D V + + + S ++ +K+ + E +S DG VI HGTDTL TA
Sbjct: 53 DLANV--RGEQVMQI-ASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYF 109
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIRG 251
L+ + KP++V GS + +DG+ N A+ +A N D V V N ++ G
Sbjct: 110 LNLVQ-KTDKPIVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSG 168
Query: 252 NRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNL------- 304
K + +AF S P L V V KS + K+ V S+ ++
Sbjct: 169 RDVSKSINIKTEAFKSAWGP-LGMV-----VEGKSYWFRLPAKRHTVNSEFDIKQISSLP 222
Query: 305 NVGILRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVN 364
V I Y ++++ ++ Q+ + +I G+G+ S ++ L+ I+
Sbjct: 223 QVDIAYSYGNVTDTAYKALAQNGAKALIHAGTGNGSVS---SRVVPALQQLRKNGTQIIR 279
Query: 365 CSQCSRGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMT 423
S ++GG A + + +D+ PE A ++K+ ++ + I
Sbjct: 280 SSHVNQGG-FVLRNAEQPDDKNDWVVAHDLNPEKARILAMVAMTKT-QDSKELQRIFWE 336
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A
{Acinetobacter glutaminasificans} SCOP: c.88.1.1
Length = 331
Score = 211 bits (540), Expect = 3e-63
Identities = 66/355 (18%), Positives = 138/355 (38%), Gaps = 34/355 (9%)
Query: 76 KVLVLYTGGTIGMEDNEQGALAPSSKPLTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVK 135
V+++ TGGTI A S K+ + L+ +P+V
Sbjct: 3 NVVIVATGGTIAGAGASSTNSATYSAA---KVPVDALIKA---------------VPQVN 44
Query: 136 DTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEY--YESYDGFVILHGTDTLSYTASA 193
D + + S ++ + +A + + S +G VI HGTDT+ TA
Sbjct: 45 DLANITGIQAL---QVASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFF 101
Query: 194 LSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAGNYD--IPEVTVYFNHKLIRG 251
L+ ++ + KP+++ GS + +DG N A+ LA + + V V N +
Sbjct: 102 LNLVV-HTDKPIVLVGSMRPSTALSADGPLNLYSAVALASSNEAKNKGVMVLMNDSIFAA 160
Query: 252 NRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKFDVQ---SQLNLNVGI 308
K AF S V S+ + + +F+++ V I
Sbjct: 161 RDVTKGINIHTHAFVSQWGALGTLVEGKPYWFRSSVKKHTNNSEFNIEKIQGDALPGVQI 220
Query: 309 LRIYPHISNHTVRSFMQSPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQC 368
+ ++ ++F ++ ++ +I G+G+ + + +L ++ + IV S+
Sbjct: 221 VYGSDNMMPDAYQAFAKAGVKAIIHAGTGNGSMANYLVPEV--RKLHDEQGLQIVRSSRV 278
Query: 369 SRGGTSDTYEAGKILSGIGVINGYDMTPEAALTKLSYVLSKSELTLQQKKDIMMT 423
++G A + G I +D+ P+ A ++ L+K+ ++ +++
Sbjct: 279 AQGFV--LRNAEQPDDKYGWIAAHDLNPQKARLLMALALTKT-NDAKEIQNMFWN 330
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 113 bits (285), Expect = 5e-27
Identities = 34/184 (18%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A ++ ++ + + YG + LH A G ++V L + ++ +
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYLLAG 587
++PLH + +L G + + +G L A+ G ++K L L
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFL---LQHQ 334
Query: 588 INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIE 647
++N +G +PLH A + + V LL + +G + + +A ++ + +
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394
Query: 648 LLKS 651
+LK
Sbjct: 395 VLKV 398
Score = 102 bits (258), Expect = 2e-23
Identities = 38/178 (21%), Positives = 61/178 (34%), Gaps = 33/178 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G + +K + A+ ++ LH A G ++ V LE S
Sbjct: 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A + + LL L + N
Sbjct: 147 FTPLHVAAKYGKVRVAELL---------------------------------LERDAHPN 173
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
GLTPLH AV +NN++ V+ LL + NG + + +A + ++ L
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Score = 101 bits (254), Expect = 5e-23
Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 33/178 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + +K + GA ++++ LH A G ++ KY L+N V+ + D
Sbjct: 21 ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A ++++LL L N N
Sbjct: 81 QTPLHCAARIGHTNMVKLL---------------------------------LENNANPN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ G TPLH A ++E+V LL + K G + + VA + + ELL
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165
Score = 100 bits (251), Expect = 1e-22
Identities = 32/178 (17%), Positives = 62/178 (34%), Gaps = 33/178 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV ++D +K + G ++ LH A ++++ + L+ G S +
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG 245
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
++PLH A +++ LL L N N
Sbjct: 246 VTPLHLAAQEGHAEMVALL---------------------------------LSKQANGN 272
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ GLTPLH ++ L+ V + + G + + VA+ +++ L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Score = 99.9 bits (250), Expect = 2e-22
Identities = 31/162 (19%), Positives = 52/162 (32%), Gaps = 33/162 (20%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
G LH A +G L IVK L+ G S ++ + +PLH A A ++
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLN 607
+ L L +N TPLH A
Sbjct: 64 KYL---------------------------------LQNKAKVNAKAKDDQTPLHCAARI 90
Query: 608 NNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ V+ LL + + + G + + +A + + + L
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Score = 94.5 bits (236), Expect = 1e-20
Identities = 36/171 (21%), Positives = 59/171 (34%), Gaps = 36/171 (21%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
+EG + + +G + T LH A G + +VK+ L++ V+ +
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 344
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
SPLH+A DI+ LL L G + N
Sbjct: 345 YSPLHQAAQQGHTDIVTLL---------------------------------LKNGASPN 371
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYL---LSQHVDLTIENKNGQSAIEVANQ 639
+V S G TPL A I L + + + +K+ S E ++
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 422
Score = 72.9 bits (180), Expect = 8e-14
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 33/130 (25%)
Query: 520 NGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKR 579
G+S ++PLH A I++ L
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNL----------------------------- 33
Query: 580 LQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ 639
L G + N + TPLH A + E +YLL + + K+ Q+ + A +
Sbjct: 34 ----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 89
Query: 640 MQLNDIIELL 649
+ ++++LL
Sbjct: 90 IGHTNMVKLL 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 105 bits (263), Expect = 9e-26
Identities = 37/222 (16%), Positives = 73/222 (32%), Gaps = 45/222 (20%)
Query: 433 AIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADIS 492
A++ E L++ ++ + + ++ +G I ++
Sbjct: 19 ALYTFEPR----TPDELYIEEG-DIIYITDMSDTNWWK-GTSKGRTGLIP-----SNYVA 67
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIR-LLR 551
N LH A G L ++ CL+N V V+ D + L+ A DI+ L
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFT 127
Query: 552 HCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIE 611
LNQ + +G T LHAA +
Sbjct: 128 QPNI---------------------------------ELNQQNKLGDTALHAAAWKGYAD 154
Query: 612 SVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKSSE 653
V+ LL++ + N + A ++A +++ + ++
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD 196
Score = 78.8 bits (195), Expect = 9e-17
Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 6/149 (4%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
+ A + + + + + + +I + +
Sbjct: 16 VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESID- 74
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH- 620
+ L AA RG + L+ L + +N +D G T L+ A + + V L +Q
Sbjct: 75 ----NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN 130
Query: 621 VDLTIENKNGQSAIEVANQMQLNDIIELL 649
++L +NK G +A+ A DI++LL
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLL 159
Score = 67.3 bits (165), Expect = 7e-13
Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 3/138 (2%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCL-ENGVSVHIRDNY 530
A + G++ ++E + ++ D L+ AC G DIV+ + + ++ ++
Sbjct: 80 AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLLAGIN 589
+ LH A DI++LL GA + A L+
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198
Query: 590 LNQVDSIGLTPLHAAVLN 607
++ + L
Sbjct: 199 RTLSNAEDYLDDEDSDLE 216
Score = 67.3 bits (165), Expect = 9e-13
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 525 HIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSY 583
+ A+ + L + + D ++G
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDI-IYITDMSDTNWWKGTSKGRTG----- 59
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
L+ + + PLH A N+ +R L V + +K G +A+ A
Sbjct: 60 LIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHK 119
Query: 644 DIIELL 649
DI+E+L
Sbjct: 120 DIVEML 125
Score = 46.5 bits (111), Expect = 9e-06
Identities = 9/74 (12%), Positives = 26/74 (35%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A +G D ++ + GA + + +++ A + ++K + + D
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206
Query: 532 ISPLHEAVIADQHD 545
++ + H
Sbjct: 207 YLDDEDSDLEHHHH 220
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 106 bits (268), Expect = 2e-25
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 34/184 (18%)
Query: 472 AVREGDIDKIKEM-QNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A R G+ +K+ + + +D + LH A ++ IV+ L++G VH +D
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+ PLH A +++ LL L G +
Sbjct: 91 GLVPLHNACSYGHYEVTELL---------------------------------LKHGACV 117
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N +D TPLH A N +E LLS D T+ N +G+SA+++A +L + +
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Query: 651 SSET 654
+
Sbjct: 178 KGHS 181
Score = 96.4 bits (241), Expect = 8e-22
Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 41/181 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVG---KLDIVKYCLENGVSVHIRD 528
A RE D+ K+K+ LH A + + + + L G +V+ ++
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGI 588
++PLH A +D++ +L G
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVL---------------------------------HKHGA 271
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
+N +DS+G T LH A L ++++ R LLS D +I + G +A ++ N+ ++
Sbjct: 272 KMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-----NEAVQQ 326
Query: 649 L 649
+
Sbjct: 327 I 327
Score = 85.2 bits (212), Expect = 4e-18
Identities = 34/180 (18%), Positives = 62/180 (34%), Gaps = 44/180 (24%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + ++ + +GAD+ D LH ACS G ++ + L++G V+ D +
Sbjct: 65 AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQ 124
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLHEA ++ ++ LL L G +
Sbjct: 125 FTPLHEAASKNRVEVCSLL---------------------------------LSHGADPT 151
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
V+ G + + A E + Y G S ++ A + L + + L
Sbjct: 152 LVNCHGKSAVDMAPTPELRERLTYEF-----------KGHSLLQAAREADLAKVKKTLAL 200
Score = 79.5 bits (197), Expect = 3e-16
Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 38/146 (26%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
GA+++ + D LH A D+++ ++G ++ D+ + LH A +A
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ 294
Query: 546 IIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
RLL L G + + + G T
Sbjct: 295 TCRLL---------------------------------LSYGSDPSIISLQGFTAAQMGN 321
Query: 606 LNNNIESVRYLLSQHVDLTIENKNGQ 631
E+V+ +LS+ + + + +
Sbjct: 322 -----EAVQQILSESTPMRTSDVDYR 342
Score = 64.1 bits (157), Expect = 4e-11
Identities = 26/133 (19%), Positives = 41/133 (30%), Gaps = 34/133 (25%)
Query: 518 LENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMI 577
+ + Y L E AA G
Sbjct: 11 ADPSAKAVLTGEYKKDELLE---------------------------------AARSGNE 37
Query: 578 KRLQSYLLA-GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEV 636
++L + L +N + D TPLH A N + V+ LL D+ ++K G +
Sbjct: 38 EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 637 ANQMQLNDIIELL 649
A ++ ELL
Sbjct: 98 ACSYGHYEVTELL 110
Score = 57.1 bits (139), Expect = 6e-09
Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 40/138 (28%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A D ++ + +GA ++ D + LH A G L + L G I
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG 313
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ ++ ++ + L +
Sbjct: 314 FTAAQMG-----NEAVQQI---------------------------------LSESTPMR 335
Query: 592 QVDSIGLTPLHAAVLNNN 609
D L A +
Sbjct: 336 TSDVDY--RLLEASKAGD 351
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 102 bits (258), Expect = 4e-25
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 9/185 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG-VSVHIRDNY 530
A R D K + AD ++ D R LH A S + + + N + R +
Sbjct: 32 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYLLA 586
+PL A ++ L + A + N LG L AAA L L
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVL---LKN 147
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
G N + ++ TPL A + E+ + LL + I + + ++A + +DI+
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 207
Query: 647 ELLKS 651
LL
Sbjct: 208 RLLDE 212
Score = 87.9 bits (219), Expect = 7e-20
Identities = 38/165 (23%), Positives = 57/165 (34%), Gaps = 33/165 (20%)
Query: 486 NYGADIS-MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQH 544
GA + TD LH A + D K LE +I+DN +PLH AV AD
Sbjct: 12 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 71
Query: 545 DIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAA 604
+ ++L A +L+ G TPL A
Sbjct: 72 GVFQILIRNRA--------------------------------TDLDARMHDGTTPLILA 99
Query: 605 VLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ L++ H D+ + G+SA+ A + D +L
Sbjct: 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Score = 82.1 bits (204), Expect = 7e-18
Identities = 32/190 (16%), Positives = 65/190 (34%), Gaps = 38/190 (20%)
Query: 433 AIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADIS 492
A+ + V + L + +L+ L A R ++++ N AD++
Sbjct: 65 AVSADAQG----VFQILIRNRATDLDARMHDGTTPLI-LAARLAVEGMLEDLINSHADVN 119
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
D ++ LH A +V +D L+NG + +++N + +PL A ++ ++L
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL-- 177
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
L N + D + P A + +
Sbjct: 178 -------------------------------LDHFANRDITDHMDRLPRDIAQERMHHDI 206
Query: 613 VRYLLSQHVD 622
VR L ++
Sbjct: 207 VRLLDEYNLV 216
Score = 28.5 bits (65), Expect = 6.5
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 608 NNIESVRYLLSQHVDLTIE-NKNGQSAIEVANQMQLNDIIELL 649
+ + + Q L + ++ G++A+ +A + +D + L
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL 44
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 103 bits (260), Expect = 6e-25
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 2/178 (1%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ + + G +++ D + LH AC G L VK L++G V+
Sbjct: 10 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 69
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PL A ++ D + LL GA + L + AA RG ++ + S + G N++
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASV-QPESDLASPIHEAARRGHVECVNSLIAYGGNID 128
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
S TPL+ A N V+ LL D+ + K S + + ++ LL
Sbjct: 129 HKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLL 185
Score = 97.5 bits (244), Expect = 8e-23
Identities = 29/181 (16%), Positives = 65/181 (35%), Gaps = 10/181 (5%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G D + + +GA + D + +H A G ++ V + G ++ + ++
Sbjct: 76 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 134
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARG---MIKRLQSYLLAGI 588
+PL+ A Q ++ L GA + N+ L A + L + G
Sbjct: 135 GTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL---MDFGA 190
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
+ ++ G P+ + + + L + ++ + Q + I +L
Sbjct: 191 DTQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKL 248
Query: 649 L 649
+
Sbjct: 249 V 249
Score = 87.1 bits (217), Expect = 2e-19
Identities = 28/150 (18%), Positives = 51/150 (34%), Gaps = 7/150 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G ++ + + YG +I L+ AC + VK LE+G V+ +
Sbjct: 108 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQ 166
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLL-AGIN 589
SPLH ++ LL GA G + + +L L
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPESPLAQL---FLEREGP 222
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + L + + + + +L +
Sbjct: 223 PSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252
Score = 80.9 bits (201), Expect = 3e-17
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 34/148 (22%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
+H A G ++ + G +V+I +SPLHEA + +++L
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL----------- 55
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L G +N V + TPL A ++ + + V LL
Sbjct: 56 ----------------------LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
+ E+ + S I A + + + L
Sbjct: 94 SVQPES-DLASPIHEAARRGHVECVNSL 120
Score = 57.4 bits (140), Expect = 2e-09
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 33/117 (28%)
Query: 533 SPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQ 592
SP+HEA I +R L + G +N
Sbjct: 5 SPMHEAAIHGHQLSLRNL---------------------------------ISQGWAVNI 31
Query: 593 VDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ + ++PLH A L ++ V+ LL + + + + A D + LL
Sbjct: 32 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 88
Score = 48.2 bits (116), Expect = 3e-06
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+P+H A ++ + S+R L+SQ + I + S + A +++L
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 55
Score = 40.5 bits (96), Expect = 9e-04
Identities = 7/50 (14%), Positives = 10/50 (20%), Gaps = 2/50 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG 521
E + + S+ R I I K L
Sbjct: 206 VPPESPL--AQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 100 bits (251), Expect = 8e-25
Identities = 38/180 (21%), Positives = 74/180 (41%), Gaps = 33/180 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
+G++ + I+ TD + L A + G++ +V++ L+NG +
Sbjct: 10 LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
S L A DI+++L CG ++N
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGV---------------------------------DVN 96
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
+ D G TPL AV N+++ V+ LL D TIE +G +++++A + + ++++S
Sbjct: 97 EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
Score = 55.1 bits (134), Expect = 4e-09
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
+ AA+G + L + + +N D G TPL A + I V +LL D +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66
Query: 628 KNGQSAIEVANQMQLNDIIELL 649
K +SA+ +A DI+++L
Sbjct: 67 KGRESALSLACSKGYTDIVKML 88
Score = 45.1 bits (108), Expect = 1e-05
Identities = 6/53 (11%), Positives = 17/53 (32%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+H + + + Q + ++ G + + A ++E L
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 102 bits (257), Expect = 1e-24
Identities = 43/186 (23%), Positives = 70/186 (37%), Gaps = 9/186 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG-VSVHIRDNY 530
A R D K + AD ++ D R LH A S + + + N + R +
Sbjct: 64 AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYLLA 586
+PL A ++ L + A + N LG L AAA L L
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVL---LKN 179
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
G N + ++ TPL A + E+ + LL + I + + ++A + +DI+
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIV 239
Query: 647 ELLKSS 652
LL
Sbjct: 240 RLLDLE 245
Score = 89.8 bits (224), Expect = 2e-20
Identities = 39/165 (23%), Positives = 59/165 (35%), Gaps = 33/165 (20%)
Query: 486 NYGADIS-MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQH 544
GA + TD LH A + D K LE +I+DN +PLH AV AD
Sbjct: 44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQ 103
Query: 545 DIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAA 604
+ ++L + N A +L+ G TPL A
Sbjct: 104 GVFQIL-----------------IRNRAT---------------DLDARMHDGTTPLILA 131
Query: 605 VLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ L++ H D+ + G+SA+ A + D +L
Sbjct: 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Score = 88.3 bits (220), Expect = 8e-20
Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 40/197 (20%)
Query: 433 AIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADIS 492
A+ + V + L + +L+ L A R ++++ N AD++
Sbjct: 97 AVSADAQG----VFQILIRNRATDLDARMHDGTTPLI-LAARLAVEGMLEDLINSHADVN 151
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
D ++ LH A +V +D L+NG + +++N + +PL A ++ ++L
Sbjct: 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL-- 209
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
L N + D + P A + +
Sbjct: 210 -------------------------------LDHFANRDITDHMDRLPRDIAQERMHHDI 238
Query: 613 VRYLLSQHVDLTIENKN 629
VR L +H + +
Sbjct: 239 VRLLDLEHHH--HHHHH 253
Score = 69.0 bits (170), Expect = 3e-13
Identities = 28/155 (18%), Positives = 52/155 (33%), Gaps = 35/155 (22%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVH-IRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
++ ++ + G S+H D + LH A + D + L
Sbjct: 22 GGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL----- 76
Query: 556 HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRY 615
L A + N D++G TPLHAAV + +
Sbjct: 77 ----------------------------LEASADANIQDNMGRTPLHAAVSADAQGVFQI 108
Query: 616 LLSQH-VDLTIENKNGQSAIEVANQMQLNDIIELL 649
L+ DL +G + + +A ++ + ++E L
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143
Score = 55.6 bits (135), Expect = 1e-08
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 23/130 (17%)
Query: 522 VSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQ 581
+ V++R +PL A + G N+ +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGG---------------------GLETGNSEEEEDAPAVI 39
Query: 582 SYLLA-GINL-NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ 639
S + G +L NQ D G T LH A + ++ + LL D I++ G++ + A
Sbjct: 40 SDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Query: 640 MQLNDIIELL 649
+ ++L
Sbjct: 100 ADAQGVFQIL 109
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 101 bits (254), Expect = 1e-24
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 3/187 (1%)
Query: 466 PALFQSAVREGDIDKIKEM-QNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSV 524
+ G +D++KE + + TD D R LH ACS G +IV++ L+ GV V
Sbjct: 9 MICNLAY--SGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 525 HIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYL 584
+ +D+ SPLH A A +I++ L GAH+ L AA++ + L
Sbjct: 67 NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 585 LAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLND 644
G N + D T +H A N++ V LL I++ G + + +A + +
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 645 IIELLKS 651
+ L +
Sbjct: 187 EAKFLVT 193
Score = 96.1 bits (239), Expect = 1e-22
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 2/178 (1%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + ++ + G ++ D + LH A S G +IVK L G V+ +
Sbjct: 47 ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A ++H+I +L GA+ + + + AAA+G +K + L + N
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D+ G TPLH A +E ++L++Q + IENK ++ ++VA +I
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG--LGLILKR 222
Score = 81.1 bits (200), Expect = 2e-17
Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 2/154 (1%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + +K + GA ++ + + LH A S + +I LE G + +D+YD
Sbjct: 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ +H A ++ +L A + L A ++ + + G ++
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTI 625
+ TPL A + + L++ + ++
Sbjct: 200 IENKEEKTPLQVA--KGGLGLILKRLAEGEEASM 231
Score = 52.2 bits (125), Expect = 1e-07
Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 33/121 (27%)
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+I + A ++ + L
Sbjct: 7 NIMICNLAYSGKLDELKERI---------------------------------LADKSLA 33
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
+ D T LH A + E V +LL V + ++ G S + +A ++I++ L
Sbjct: 34 TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 651 S 651
Sbjct: 94 V 94
Score = 33.7 bits (77), Expect = 0.13
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 424 NIRGELSTDAIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKE 483
+ + A+H + L L + N L A E +++ K
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHIL-LFYKASTNIQDTEGNTPL-HLACDEERVEEAKF 190
Query: 484 MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
+ GA I + + + + L A G L ++ L G +
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 103 bits (258), Expect = 6e-24
Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 18/184 (9%)
Query: 472 AVREGDIDKIK-----EMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
A+ + + + + + + LH A + D+ +E G+ V++
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239
Query: 527 RDNYDISPLHEAVIADQHDIIRLL-------------RHCGAHLTNEPMFLGDVLTNAAA 573
DN PL+ +V A + + L H G + + + D + AA
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299
Query: 574 RGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSA 633
+ LQ + + + G R L+ + +++ +
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARS 359
Query: 634 IEVA 637
V+
Sbjct: 360 SAVS 363
Score = 90.7 bits (226), Expect = 7e-20
Identities = 34/188 (18%), Positives = 70/188 (37%), Gaps = 16/188 (8%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R+G D+++ + G ++ + LH AC G +D KY G +
Sbjct: 27 AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQ- 85
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
P+H AV+A++ D++ L P + + + I +
Sbjct: 86 -KPIHLAVMANKTDLVVALVEGAKERGQMP------ESLLNECDERE------VNEIGSH 132
Query: 592 QVDSIGLTPLHAAVLNNN--IESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G T LH V +E ++ L+ T ++K ++ + A + + + ++L+
Sbjct: 133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLM 192
Query: 650 KSSETKSK 657
+
Sbjct: 193 MDTVPSKS 200
Score = 90.7 bits (226), Expect = 9e-20
Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 30/164 (18%)
Query: 488 GADISMTDFDRRNILHTACSVGK--LDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
+ + LH +G L+++K ++ G S +D D +PL A+ +
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187
Query: 546 IIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
+ L+ + + L+ + G + LH A+
Sbjct: 188 ALDLMMDTVPSK----------------------------SSLRLDYANKQGNSHLHWAI 219
Query: 606 LNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
L N + + +D+ +E+ + ++ + + + + L
Sbjct: 220 LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263
Score = 79.9 bits (198), Expect = 3e-16
Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 41/168 (24%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
+ +D + +H A G+ D V+ +E GVS I++ + + LH A D
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTA 69
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLN 607
+ L G + G P+H AV+
Sbjct: 70 KYL---------------------------------ASVGEVHSLWH--GQKPIHLAVMA 94
Query: 608 NNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKSSETK 655
N + V L+ + GQ + N+ ++ E+ +
Sbjct: 95 NKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGSHVKHC 136
Score = 58.0 bits (141), Expect = 4e-09
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 585 LAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLND 644
+N + D + +H A + VR L+ V TI+N+ G +A+ +A + D
Sbjct: 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVD 67
Query: 645 IIELL 649
+ L
Sbjct: 68 TAKYL 72
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 99.8 bits (250), Expect = 7e-24
Identities = 47/186 (25%), Positives = 74/186 (39%), Gaps = 5/186 (2%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI-LHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A ID +K + GA + D + LH A G L +V ++ G + D
Sbjct: 49 AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLL-AGI 588
S +H A I+ L G + + G L AA R LL +
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Query: 589 NLNQVDSI-GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIE 647
++N D T LH AVL N + LL ++ +N G+SA+++A Q + +I
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMIN 227
Query: 648 LLKSSE 653
L+ +
Sbjct: 228 HLQEAR 233
Score = 89.8 bits (224), Expect = 2e-20
Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 37/181 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN-Y 530
A + G ++ +E+ G D+ D + +LH A ++D+VKY + G V
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+ +PLH A ++ L + G +
Sbjct: 76 NSTPLHWATRQGHLSMVVQL---------------------------------MKYGADP 102
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA--NQMQLNDIIEL 648
+ +D G + +H A + V YL+++ D+ + ++NG + + A + D L
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPTRL 161
Query: 649 L 649
L
Sbjct: 162 L 162
Score = 86.3 bits (215), Expect = 3e-19
Identities = 29/160 (18%), Positives = 56/160 (35%), Gaps = 34/160 (21%)
Query: 491 ISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLL 550
++ D + A G + + +E G V D +++ LH A I ++ D+++
Sbjct: 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61
Query: 551 RHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDS-IGLTPLHAAVLNNN 609
+ G ++Q+ + TPLH A +
Sbjct: 62 ---------------------------------ISKGAIVDQLGGDLNSTPLHWATRQGH 88
Query: 610 IESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ V L+ D ++ + G S I +A Q I+ L
Sbjct: 89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Score = 54.7 bits (133), Expect = 2e-08
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIEL 648
++ +D + A E R L+ D+ +K + + A D+++
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKY 60
Query: 649 L 649
Sbjct: 61 Y 61
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 96.0 bits (240), Expect = 1e-23
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 34/164 (20%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
G D T+ +LH A G + V+Y L+NG +++D+ +PLHEA ++
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLN 607
LL L +N +PLH A N
Sbjct: 60 ELL---------------------------------LQHKALVNTTGYQNDSPLHDAAKN 86
Query: 608 NNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
+++ V+ LLS N G ++ + + ++ L +
Sbjct: 87 GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 82.1 bits (204), Expect = 1e-18
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 33/147 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A +GDI ++ + G+D ++ D LH AC+ G L +V+ L++ V+ +
Sbjct: 17 ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
SPLH+A DI++LL GA + N
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGA---------------------------------SRN 103
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLS 618
V+ GL P+ + +
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEK 130
Score = 59.0 bits (144), Expect = 1e-10
Identities = 17/84 (20%), Positives = 35/84 (41%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + ++ + + A ++ T + + LH A G +DIVK L G S + + +
Sbjct: 50 ACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109
Query: 532 ISPLHEAVIADQHDIIRLLRHCGA 555
+ P+ ++ L +
Sbjct: 110 LRPVDYTDDESMKSLLLLPEKNES 133
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 97.1 bits (243), Expect = 2e-23
Identities = 37/186 (19%), Positives = 69/186 (37%), Gaps = 35/186 (18%)
Query: 467 ALFQSAVREGDIDKIKE-MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVH 525
+F REG+ ++ + N D++ D + LH AC G+ +V+ + G ++
Sbjct: 8 DIFT-QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL 585
+ + D +PLH A DI++ L L
Sbjct: 67 VMNRGDDTPLHLAASHGHRDIVQKL---------------------------------LQ 93
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI 645
++N V+ G PLH A + L++ ++I NK G+ ++ A +
Sbjct: 94 YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 153
Query: 646 IELLKS 651
E +
Sbjct: 154 RERAEK 159
Score = 81.7 bits (203), Expect = 3e-18
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 33/134 (24%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
GA I++ + LH A S G DIV+ L+ ++ + + PLH A Q
Sbjct: 60 MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ 119
Query: 546 IIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
+ L + G ++ + G P+ A
Sbjct: 120 VAEDL---------------------------------VANGALVSICNKYGEMPVDKAK 146
Query: 606 LNNNIESVRYLLSQ 619
Sbjct: 147 APLRELLRERAEKM 160
Score = 52.0 bits (126), Expect = 6e-08
Identities = 20/122 (16%), Positives = 35/122 (28%), Gaps = 32/122 (26%)
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAG 587
+ + +RL L N
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLW-----------------LDNTEN-------------- 30
Query: 588 INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIE 647
+LNQ D G +PLH A V L+ + + + N+ + + +A DI++
Sbjct: 31 -DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQ 89
Query: 648 LL 649
L
Sbjct: 90 KL 91
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 95.9 bits (240), Expect = 3e-23
Identities = 41/181 (22%), Positives = 76/181 (41%), Gaps = 34/181 (18%)
Query: 472 AVREGDIDKIKEMQNYGAD-ISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
+G++D++KE G + ++ D L A + G+++ V++ LE G HI
Sbjct: 9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
S L A DI+ LL L +++
Sbjct: 69 RESALSLASTGGYTDIVGLL---------------------------------LERDVDI 95
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N D G TPL AV N+++ V LL++ DLT E +G + +++A + + ++++
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 651 S 651
+
Sbjct: 156 N 156
Score = 90.9 bits (227), Expect = 2e-21
Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 38/199 (19%)
Query: 433 AIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADIS 492
ELD K G +NK + + L A G+I+ ++ + +GAD
Sbjct: 9 LAAQGELD----QLKEHLRKGDNLVNKPDERGFTPLI-WASAFGEIETVRFLLEWGADPH 63
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
+ +R + L A + G DIV LE V ++I D +PL AV + + L
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA 123
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
GA +L G TP+ AV +
Sbjct: 124 RGA---------------------------------DLTTEADSGYTPMDLAVALGYRKV 150
Query: 613 VRYLLSQHVDLTIENKNGQ 631
+ + + + L N
Sbjct: 151 QQVIENHILKLFQSNLVPA 169
Score = 50.9 bits (123), Expect = 2e-07
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 534 PLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQV 593
+H+ + D ++ G +L N+P
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKP-------------------------------- 32
Query: 594 DSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D G TPL A IE+VR+LL D I K +SA+ +A+ DI+ LL
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Score = 39.3 bits (93), Expect = 0.001
Identities = 6/54 (11%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDL-TIENKNGQSAIEVANQMQLNDIIELL 649
+H ++ ++ L + +L ++ G + + A+ + + L
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL 55
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 98.0 bits (245), Expect = 3e-23
Identities = 37/191 (19%), Positives = 66/191 (34%), Gaps = 11/191 (5%)
Query: 472 AVREGDIDKIKEMQNY----GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIR 527
A+ + E+ A ++ + ++ LH A + +I + L G +R
Sbjct: 15 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLT-----NEPMFLGD-VLTNAAARGMIKRLQ 581
D +PLH A + +L + G L A+ G + ++
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134
Query: 582 SYLLAGINLNQVDSI-GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQM 640
+ G ++N + G T LH AV N + V LL D+ G S ++
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 194
Query: 641 QLNDIIELLKS 651
I + L
Sbjct: 195 PSTRIQQQLGQ 205
Score = 91.8 bits (229), Expect = 4e-21
Identities = 43/226 (19%), Positives = 72/226 (31%), Gaps = 17/226 (7%)
Query: 433 AIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADIS 492
AI + E L V + + LN + L AV + + + G D
Sbjct: 15 AIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLH-LAVITNQPEIAEALLGAGCDPE 72
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENG------VSVHIRDNYDISPLHEAVIADQHDI 546
+ DF LH AC G L V ++ + + + LH A I I
Sbjct: 73 LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132
Query: 547 IRLLRHCGAHLTNEP-MFLGD-VLTNAAARG---MIKRLQSYLLAGINLNQVDSIGLTPL 601
+ LL GA + N G L A ++ L L G ++N+V G +P
Sbjct: 133 VELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLL---LKCGADVNRVTYQGYSPY 188
Query: 602 HAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIE 647
+ + L ++ + + + + E
Sbjct: 189 QLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 58.7 bits (143), Expect = 8e-10
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 37/126 (29%)
Query: 528 DNYDISPLHEAVI----ADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSY 583
S LH A+I A ++IR ++ A
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLA---------------------------- 36
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
LN +++ TPLH AV+ N E LL D + + G + + +A +
Sbjct: 37 -----FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCL 91
Query: 644 DIIELL 649
+ +L
Sbjct: 92 ASVGVL 97
Score = 46.8 bits (112), Expect = 8e-06
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 592 QVDSIGLTPLHAAVLNNN----IESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIE 647
Q+ G + LH A+++ +E +R + L +N Q+ + +A +I E
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 648 LL 649
L
Sbjct: 63 AL 64
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 95.9 bits (239), Expect = 4e-23
Identities = 26/198 (13%), Positives = 60/198 (30%), Gaps = 40/198 (20%)
Query: 465 YPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSV----GKLDIVKYCLEN 520
Y + +A G + E+ G + + NIL+ + I + +
Sbjct: 7 YRTVS-AAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 521 GVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRL 580
G + R + +DI + K
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTE------------------------LCKIF 100
Query: 581 QSYLLAGINLNQVDSIGLTPLHAAVLNNNIES------VRYLLSQH-VDLTIENKNGQSA 633
L G ++ + + + N ++ + + SQ + L I++K G +A
Sbjct: 101 ---LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157
Query: 634 IEVANQMQLNDIIELLKS 651
+E + Q +++++
Sbjct: 158 LEFVKRCQKPIALKMMED 175
Score = 42.4 bits (100), Expect = 1e-04
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES----VRYLLSQHVDL 623
++ AA G + G + L+ + NNN E+ +L+++ D+
Sbjct: 10 VSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADI 68
Query: 624 TIENKNGQSAIEVANQMQLNDIIELLKSSE 653
K G + Q NDI + +
Sbjct: 69 KSRTKEGTTLFFPLFQGGGNDITGTTELCK 98
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 98.8 bits (247), Expect = 5e-23
Identities = 36/196 (18%), Positives = 64/196 (32%), Gaps = 18/196 (9%)
Query: 472 AVREGDIDKIKEMQNYGAD---ISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
AV + + + A + + + + LH A +G+ V+ G V + +
Sbjct: 16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75
Query: 529 NYDISPLHEAVIADQHDIIRLLRHCGA-------------HLTNEPMFLGDVLTNAAARG 575
+ LH A H +L P +
Sbjct: 76 RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135
Query: 576 MIKRLQSYLL-AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKN-GQSA 633
+ + L + G TPLH AV++ + E VR L DL G++
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195
Query: 634 IEVANQMQLNDIIELL 649
+ +A + Q ++ELL
Sbjct: 196 LHLAVEAQAASVLELL 211
Score = 98.8 bits (247), Expect = 5e-23
Identities = 29/211 (13%), Positives = 61/211 (28%), Gaps = 34/211 (16%)
Query: 442 AAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNI 501
+ Q + + + + ++ +++ + ++D
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYD-ISPLHEAVIADQHDIIRLLRHCGAHLTNE 560
LH A ++V+ + G ++ + +PLH AV A ++ LL
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL---------- 211
Query: 561 PMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH 620
L AG + G TPL +A+L N R L +
Sbjct: 212 -----------------------LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248
Query: 621 VDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
+ + S + +D +
Sbjct: 249 APEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 75.3 bits (186), Expect = 4e-15
Identities = 19/160 (11%), Positives = 35/160 (21%), Gaps = 36/160 (22%)
Query: 502 LHTACSVGKLDIVKYCLENG---VSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLT 558
LH A + + L + ++++ + LH A I + + L
Sbjct: 13 LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL-------- 64
Query: 559 NEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLS 618
AG + + G T LH A LL
Sbjct: 65 -------------------------YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99
Query: 619 QHVDLTIENKNGQSAIEVANQMQLNDIIELLKSSETKSKV 658
+ + + + S
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE 139
Score = 48.7 bits (117), Expect = 2e-06
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT---IENKNGQSAIEVANQMQLNDII 646
V G T LH AV++ + + +LL ++N GQ+A+ +A + +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61
Query: 647 ELL 649
E L
Sbjct: 62 EKL 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 94.8 bits (237), Expect = 5e-23
Identities = 42/179 (23%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GA + TD+ + LH A G + L GVS R D
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A +I+ +L L G ++N
Sbjct: 68 RTPLHMAASEGHANIVEVL---------------------------------LKHGADVN 94
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D + +T LH A +N+ E V L+ D+ ++K ++A +++ D+ E+L+
Sbjct: 95 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
Score = 52.4 bits (127), Expect = 3e-08
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 34/118 (28%)
Query: 534 PLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQV 593
L EA A Q D +R+L + G
Sbjct: 5 KLLEAARAGQDDEVRIL---------------------------------MANGAPFTT- 30
Query: 594 DSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D +G +PLH A + + LL V K ++ + +A +I+E+L
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Score = 42.4 bits (101), Expect = 7e-05
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
L A + VR L++ T + G S + +A Q E+L
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVL 53
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 95.1 bits (238), Expect = 6e-23
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 33/180 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D LH A G L+IV+ L+NG V+ D+
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
++PL A + +I+ +L L G ++N
Sbjct: 81 MTPLRLAALFGHLEIVEVL---------------------------------LKNGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D G TPLH A + ++E V LL D+ ++K G++A +++ D+ E+L+
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 60.1 bits (147), Expect = 9e-11
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 34/130 (26%)
Query: 521 GVSVHIRDNYDIS-PLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKR 579
G H D+ L EA A + D +R+L
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRIL----------------------------- 33
Query: 580 LQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ 639
+ G ++N D+ G TPLH A N ++E V LL D+ + G + + +A
Sbjct: 34 ----MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 640 MQLNDIIELL 649
+I+E+L
Sbjct: 90 FGHLEIVEVL 99
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 96.4 bits (241), Expect = 1e-22
Identities = 40/188 (21%), Positives = 77/188 (40%), Gaps = 11/188 (5%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG----VSVHIR 527
AV ++ + GA D + H AC ++ L++ + + R
Sbjct: 53 AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSY 583
+ ++ LH AV + + ++LL GA + + G L +A M++ L
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL--- 169
Query: 584 LLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLN 643
L G N+N G + LH+A + VR L+ D +++N + + + VA ++
Sbjct: 170 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229
Query: 644 DIIELLKS 651
DI+ +
Sbjct: 230 DILRGKAT 237
Score = 79.4 bits (197), Expect = 8e-17
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 472 AVREGDIDKIKEMQNYGA----DISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIR 527
A ++ + + A D+ ++D LH A + + V+ LE G +
Sbjct: 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Query: 528 D-NYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLL 585
D SPL AV + +++LL GA++ N M+ G L +A+ RG++ +++ +
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVR 204
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+G + + + TPL A I+ +R ++
Sbjct: 205 SGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 79.0 bits (196), Expect = 1e-16
Identities = 39/163 (23%), Positives = 59/163 (36%), Gaps = 41/163 (25%)
Query: 495 DFDRRNILHTACSVGKLDIVKY----CLENGVSVHIRDNYDISPLHEAVIADQHDIIRLL 550
D D LH A G L V + G + I +N +PLH AVI ++RLL
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 551 RHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNI 610
+ AG + +D G T H A + +
Sbjct: 66 ---------------------------------VTAGASPMALDRHGQTAAHLACEHRSP 92
Query: 611 ESVRYLLSQ----HVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+R LL +DL N +G +A+ VA + + ++LL
Sbjct: 93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135
Score = 62.5 bits (153), Expect = 4e-11
Identities = 18/84 (21%), Positives = 40/84 (47%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV + ++ + +GA+++ + + LH+A G L +V+ + +G +++ ++
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN 216
Query: 532 ISPLHEAVIADQHDIIRLLRHCGA 555
+PL A DI+R A
Sbjct: 217 DTPLMVARSRRVIDILRGKATRPA 240
Score = 49.0 bits (118), Expect = 1e-06
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 590 LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV----DLTIENKNGQSAIEVANQMQLNDI 645
+ D G TPLH AV+ N+ +V L++ +L I N Q+ + +A L +
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 646 IELL 649
+ LL
Sbjct: 62 VRLL 65
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 97.6 bits (244), Expect = 2e-22
Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 47/225 (20%)
Query: 432 DAIHNNELDLAA-----AVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQN 486
DA L + + R++ L A GD +++ +
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPP-VVKRKKTKVKFDDGAVFLA--ACSSGDTEEVLRLLE 61
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDI 546
GADI+ + D LH AC +D+VK+ +ENG +++ DN PLH A DI
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121
Query: 547 IRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVL 606
L + G ++ V+S G TPL A
Sbjct: 122 AEYL---------------------------------ISQGAHVGAVNSEGDTPLDIAEE 148
Query: 607 NNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
E ++ +++ + ++A + ++ L D + L S
Sbjct: 149 EAMEELLQNEVNRQ------GVDIEAARKEEERIMLRDARQWLNS 187
Score = 86.4 bits (215), Expect = 1e-18
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDI-SPLHEAVIADQHD 545
GA + + + L A ++++ + DI + E D
Sbjct: 128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRD 180
Query: 546 IIRLLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQSYLL-AGINLNQVDSIGLTPLHA 603
+ L + G L AAA+G + L+ L+ A ++N D G TPLHA
Sbjct: 181 ARQWLNSGHIND-VRHAKSGGTALHVAAAKGYTEVLK-LLIQARYDVNIKDYDGWTPLHA 238
Query: 604 AVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
A E+ R L+ D+ NK GQ+A +VA++ L + EL K
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK 286
Score = 72.9 bits (180), Expect = 3e-14
Identities = 24/159 (15%), Positives = 53/159 (33%), Gaps = 34/159 (21%)
Query: 491 ISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLL 550
+ M D ++ +G ++ + ++ + D + A + + + L
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLAACSSGDTEEVLRL 59
Query: 551 RHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNI 610
L G ++N + GLT LH A +++N+
Sbjct: 60 ---------------------------------LERGADINYANVDGLTALHQACIDDNV 86
Query: 611 ESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ V++L+ ++ + G + A DI E L
Sbjct: 87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125
Score = 71.8 bits (177), Expect = 7e-14
Identities = 27/199 (13%), Positives = 60/199 (30%), Gaps = 47/199 (23%)
Query: 439 LDLAAA-----VAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISM 493
LD+A + + ++ +K R D + + + +
Sbjct: 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKE--------EERIMLRDARQWLNSGHINDVR 194
Query: 494 TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHC 553
LH A + G +++K ++ V+I+D +PLH A + + R+L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL--- 251
Query: 554 GAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESV 613
+ ++ V+ +G T A +
Sbjct: 252 ------------------------------VENLCDMEAVNKVGQTAFDVADEDILGYLE 281
Query: 614 RYLLSQHVDLTIENKNGQS 632
Q++ + E + +S
Sbjct: 282 ELQKKQNLLHS-EKREKKS 299
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 93.2 bits (233), Expect = 2e-22
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 472 AVREGDIDKIKE-MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A GD+ +++ + + + L G I L+ G S +++D
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS 67
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYLLA 586
SP+H+A D +++L GA + N P G + A G ++ +L A
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVS----FLAA 122
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+L++ D+ GLTPL A+ + V L
Sbjct: 123 ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 71.7 bits (177), Expect = 5e-15
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 35/151 (23%)
Query: 502 LHTACSVGKLDIVKYCLE-NGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNE 560
L A + G + V+ L V + + + L + I L
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALEL---------- 54
Query: 561 PMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH 620
L G + N D+ G +P+H A +++++ L+
Sbjct: 55 -----------------------LKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG 91
Query: 621 VDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D+ + + G I +A Q ++ L +
Sbjct: 92 ADVNVPDGTGALPIHLAVQEGHTAVVSFLAA 122
Score = 40.9 bits (97), Expect = 3e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQH-VDLTIENKNGQSAIEVANQMQLN--DIIELL 649
L A +++ VR LL + V N+ G++A++V I L
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM---MFGSTAIALEL 54
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 94.8 bits (237), Expect = 3e-22
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 36/168 (21%)
Query: 485 QNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQH 544
+ D++ LH A ++ ++ +ENG SV I+D ++ PLH A
Sbjct: 94 RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSL 153
Query: 545 DIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAA 604
+I LL + +N D G TPL A
Sbjct: 154 KLIELL-----------------CGLGKS---------------AVNWQDKQGWTPLFHA 181
Query: 605 VLNNNIESVRYLLSQH-VDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
+ + ++ L+ ++ + + + G A +VA + + +
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLN 226
Score = 93.7 bits (234), Expect = 8e-22
Identities = 37/182 (20%), Positives = 70/182 (38%), Gaps = 35/182 (19%)
Query: 472 AVREGDIDKIKE-MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIR--- 527
A E + K++E + + + + D D R LH + S +I + L +V++
Sbjct: 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAG 587
D+ +P H A ++++ L R
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL--------------------------YDR-----PLK 97
Query: 588 INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIE 647
+LN++ + G+T LH AV E ++L+ + I++K Q + A + +IE
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 648 LL 649
LL
Sbjct: 158 LL 159
Score = 44.7 bits (107), Expect = 3e-05
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 596 IGLTPLHAAVLNNNIESVR-YLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ PLH A + N V+ L S+ L ++++G+ + + Q ++I L
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL 55
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 91.3 bits (228), Expect = 4e-22
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 36/149 (24%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
A G LD VK + G V+ PLH A Q +I+ L
Sbjct: 11 FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL----------- 59
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
LL G ++N D +TPL +AV ++ V+ LLS+
Sbjct: 60 ----------------------LLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELLK 650
D T++ +G +A E + I LL+
Sbjct: 98 DKTVKGPDGLTAFEATDN---QAIKALLQ 123
Score = 72.0 bits (178), Expect = 2e-15
Identities = 31/140 (22%), Positives = 51/140 (36%), Gaps = 33/140 (23%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A++ GD+D++K+ G D++ T R LH A G+L+I+++ L G ++ D +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
I+PL AV ++LL L G +
Sbjct: 74 ITPLLSAVYEGHVSCVKLL---------------------------------LSKGADKT 100
Query: 592 QVDSIGLTPLHAAVLNNNIE 611
GLT A
Sbjct: 101 VKGPDGLTAFEATDNQAIKA 120
Score = 49.7 bits (120), Expect = 1e-07
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ ++ + GADI+ D L +A G + VK L G ++
Sbjct: 47 AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDG 106
Query: 532 ISPLHEAVIADQHDIIR 548
++ +++
Sbjct: 107 LTAFEATDNQAIKALLQ 123
Score = 45.9 bits (110), Expect = 3e-06
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 593 VDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQM-QLNDIIELL 649
+ S+ A+ N +++ V+ +++ D+ + G+ + A QL +I+E L
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL-EILEFL 59
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 95.6 bits (239), Expect = 4e-22
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 18/197 (9%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G + +K + GAD++ DF A GK+ +K+ + G +V++R
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138
Query: 532 IS----------PLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGD-VLTNAAARGMIKR 579
L +A ++++ LL GA + N +G L +A
Sbjct: 139 EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSD 197
Query: 580 LQS---YLL-AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH-VDLTIENKNGQSAI 634
+++ LL G ++N G TPL AV ++ V+ LL Q +++ + +G++A+
Sbjct: 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Query: 635 EVANQMQLNDIIELLKS 651
+A +++L I ELL
Sbjct: 258 LLAVELKLKKIAELLCK 274
Score = 90.2 bits (225), Expect = 4e-20
Identities = 35/183 (19%), Positives = 68/183 (37%), Gaps = 28/183 (15%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV+ D ++ + +GAD + + A G + ++K L G V+ D Y
Sbjct: 46 AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ EA + + ++ L GA +V N + +
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGA----------NV--NLRRKT-----------KEDQE 142
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQH-VDLTIENKNGQSAIEVA----NQMQLNDII 646
++ G T L A ++E ++ LL + D+ + G++A+ A + + I
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202
Query: 647 ELL 649
LL
Sbjct: 203 HLL 205
Score = 84.4 bits (210), Expect = 3e-18
Identities = 29/169 (17%), Positives = 65/169 (38%), Gaps = 34/169 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI-LHTACSVGKLDIVKYCLENGVSVHIRDNY 530
AV+ D+D ++++ GA+++ + + LH A + + DIV+ L +G +R
Sbjct: 12 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+P A IA +++L L G ++
Sbjct: 72 GATPFLLAAIAGSVKLLKLF---------------------------------LSKGADV 98
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ 639
N+ D G T A + ++++++L + ++ + K + +
Sbjct: 99 NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG 147
Score = 83.3 bits (207), Expect = 8e-18
Identities = 30/154 (19%), Positives = 56/154 (36%), Gaps = 34/154 (22%)
Query: 497 DRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD-ISPLHEAVIADQHDIIRLLRHCGA 555
+ ++L A +D+V+ LE G +V+ ++ +PLH AV + DI+ LL
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL----- 58
Query: 556 HLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRY 615
L G + G TP A + +++ ++
Sbjct: 59 ----------------------------LRHGADPVLRKKNGATPFLLAAIAGSVKLLKL 90
Query: 616 LLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
LS+ D+ + G +A A ++ L
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124
Score = 77.1 bits (191), Expect = 9e-16
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI----------LHTACSVGKLDIVKYCL-EN 520
A G + +K + GA++++ + + L A G ++++K L E
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 521 GVSVHIRDNYDISPLHEAVIADQHD----IIRLLRHCGAHLTNEPMFLGD-VLTNAAARG 575
G V+ DN + L A+++ I LL GA + N G L A +
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKK 230
Query: 576 ---MIKRLQSYLL--AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKN 629
+++ LL I +N DS G T L AV + L + + +
Sbjct: 231 HLGLVQ----RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS--TDCGD 283
Score = 53.2 bits (129), Expect = 8e-08
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 34/123 (27%)
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAG 587
D L +AV + D+++ L L G
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQL---------------------------------LEGG 28
Query: 588 INLNQVDSI-GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
N+N + G TPLH AV + + V LL D + KNG + +A ++
Sbjct: 29 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLL 88
Query: 647 ELL 649
+L
Sbjct: 89 KLF 91
Score = 40.5 bits (96), Expect = 0.001
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 472 AVREGDIDKIKE-MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDN 529
AV + + ++ ++ +I+ TD D + L A + I + + G S D
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 93.6 bits (234), Expect = 9e-22
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 32/178 (17%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G +D + GA+I D+R L A L+ VKY ++ G V +D
Sbjct: 18 AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ LH A +++++ L G +++N
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQ--------------------------------MDVN 105
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
D G TP+ A +++ V+ LLS+ D+ I + + A DI E+L
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
Score = 90.9 bits (227), Expect = 7e-21
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 34/181 (18%)
Query: 472 AVREGDIDKIKEMQNYGA-DISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A ++G + ++ + + G D++ D + A +D+VK L G ++IRDN
Sbjct: 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+ LH A + DI +L L A +L
Sbjct: 144 ENICLHWAAFSGCVDIAEIL---------------------------------LAAKCDL 170
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
+ V+ G +PLH A N + V LS+ D+T++NK G++ ++ A+ +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230
Query: 651 S 651
Sbjct: 231 K 231
Score = 87.1 bits (217), Expect = 2e-19
Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 34/162 (20%)
Query: 489 ADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIR 548
+ M ++R+ LH A G +DI ++ G ++ +PL EA + + ++
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 549 LLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNN 608
L + AG ++ D+ G T LH A
Sbjct: 62 YL---------------------------------IKAGALVDPKDAEGSTCLHLAAKKG 88
Query: 609 NIESVRYLLSQH-VDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ E V+YLLS +D+ ++ G + + A + + D+++LL
Sbjct: 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Score = 57.4 bits (140), Expect = 2e-09
Identities = 15/84 (17%), Positives = 28/84 (33%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G +D + + D+ + + LH A + D V L V +++
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG 210
Query: 532 ISPLHEAVIADQHDIIRLLRHCGA 555
+PL A + Q +
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQ 234
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 93.4 bits (233), Expect = 1e-21
Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 37/183 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
R E +G + +L + G+ D+V+ + + ++
Sbjct: 12 GKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
I+ LH AV A +I++ L + G+N+N
Sbjct: 71 ITALHNAVCAGHTEIVKFL---------------------------------VQFGVNVN 97
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ---SAIEVANQMQLNDIIEL 648
DS G TPLH A NN++ ++L+ + + + + +
Sbjct: 98 AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157
Query: 649 LKS 651
L
Sbjct: 158 LYG 160
Score = 83.4 bits (207), Expect = 3e-18
Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 33/180 (18%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
+ EG+ D ++ + D S+ + + LH A G +IVK+ ++ GV+V+ D+
Sbjct: 44 SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A + + + L GA + A
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAV------------FAM------------------T 133
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D + + ++L + I NK A+ + EL
Sbjct: 134 YSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEP---QNDDELPMK 190
Score = 73.0 bits (180), Expect = 1e-14
Identities = 18/155 (11%), Positives = 51/155 (32%), Gaps = 34/155 (21%)
Query: 495 DFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCG 554
+ + L + +G+ V + ++ L ++ + + D+++ +
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRI---- 56
Query: 555 AHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVR 614
+ + + + G+T LH AV + E V+
Sbjct: 57 -----------------------------IYEVDDPSLPNDEGITALHNAVCAGHTEIVK 87
Query: 615 YLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+L+ V++ + +G + + A + + L
Sbjct: 88 FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 90.9 bits (227), Expect = 3e-21
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 8/165 (4%)
Query: 491 ISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLL 550
+ D R L AC +G + + +EN + +D + L AV ++ I L
Sbjct: 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 551 RHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYLLAGINLNQVDSIGLTPLHAAVL 606
G+++ N F G L + G M L L G N+N + G TPL A
Sbjct: 88 LSKGSNV-NTKDFSGKTPLMWSIIFGYSEMSYFL---LEHGANVNDRNLEGETPLIVASK 143
Query: 607 NNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
E V+ LL D++ + G +A A ++I++
Sbjct: 144 YGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 75.1 bits (186), Expect = 1e-15
Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 33/147 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
AV+ + +++ + G++++ DF + L + G ++ + LE+G +V+ R+
Sbjct: 75 AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG 134
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PL A + +I++ L L G +++
Sbjct: 135 ETPLIVASKYGRSEIVKKL---------------------------------LELGADIS 161
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLS 618
D GLT +A + E ++
Sbjct: 162 ARDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 29.3 bits (67), Expect = 2.9
Identities = 10/86 (11%), Positives = 20/86 (23%), Gaps = 27/86 (31%)
Query: 591 NQVDSIGLTPLHAAVL---------------------------NNNIESVRYLLSQHVDL 623
+ +D G ++ L+ L
Sbjct: 2 SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61
Query: 624 TIENKNGQSAIEVANQMQLNDIIELL 649
++ G +A+ A + I E L
Sbjct: 62 EDKDIEGSTALIWAVKNNRLGIAEKL 87
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 95.0 bits (237), Expect = 3e-21
Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 25/200 (12%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLEN---GVSVHIRD 528
AV + + GAD ++ + R+ LH A + ++ Y L + + D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232
Query: 529 NYDISPLHEAVIADQHDIIR----LLRHCGAHLTNEPMFLGDVLTN--------AAARG- 575
++ L + D + L+ GA + + D AA
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291
Query: 576 --MIKRLQSYLL--AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ 631
++K YL+ G N ++ D G TP+ A IE V YL+ Q + +
Sbjct: 292 MPIVK----YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 347
Query: 632 SAIEVANQMQLNDIIELLKS 651
+A ++A ++I+++
Sbjct: 348 TARQLAQANNHHNIVDIFDR 367
Score = 83.5 bits (207), Expect = 2e-17
Identities = 31/180 (17%), Positives = 61/180 (33%), Gaps = 41/180 (22%)
Query: 481 IKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVI 540
KE GAD++ D D L A + +V Y ++ G I + + S LH+A
Sbjct: 149 AKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 208
Query: 541 ADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTP 600
++ + + + ++ ++D G+T
Sbjct: 209 NRDFGMMVYM--------------------------L----NSTKLKGDIEELDRNGMTA 238
Query: 601 LHAAVLNNN---IESVRYLLSQHVDL--------TIENKNGQSAIEVANQMQLNDIIELL 649
L N + S + L+ + + E G++A+ A Q+ I++ L
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298
Score = 78.1 bits (193), Expect = 1e-15
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 48/178 (26%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIV--------KYCLENGVSVHIRDNYDISPLHE 537
+I + R +LH S + K C+ G V+ D + +PL
Sbjct: 114 RESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172
Query: 538 AVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIG 597
AV+A + ++ L + AG + +
Sbjct: 173 AVLARRRRLVAYL---------------------------------MKAGADPTIYNKSE 199
Query: 598 LTPLHAAVLNNNIESVRYLLSQH---VDLTIENKNGQSAIEVA---NQMQLNDIIELL 649
+ LH A N + + Y+L+ D+ ++NG +A+ + +LL
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL 257
Score = 74.2 bits (183), Expect = 2e-14
Identities = 33/174 (18%), Positives = 53/174 (30%), Gaps = 31/174 (17%)
Query: 472 AVREGDIDKIK---EMQNYGADISMTDFDRRNILHTACSVGKLD---IVKYCLENGVSVH 525
A D + DI D + L D K +E G V
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 526 IR--------DNYDISPLHEAVIADQHDIIR-LLRHCGAHLTNE-------PMFLGDVLT 569
+ LH A I++ L+ G++ ++ P+ L
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIML----- 319
Query: 570 NAAARGMIKRLQSYLL-AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVD 622
AA G I+ + YL+ G ++ VD+ T A NN+ V +
Sbjct: 320 -AAQEGRIEVVM-YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371
Score = 65.0 bits (159), Expect = 2e-11
Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 19/170 (11%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
+ ++ L A G + + L +Y + P + +
Sbjct: 27 NRKNHQSITSSQHSLLEASYDGYIKRQRNEL---------QHYSLYPNPQGYGNGNDFLG 77
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLN 607
+ EP + + A G + +N+ T LH N
Sbjct: 78 DFNHTNLQ-IPTEPEPESPIKLHTEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASN 135
Query: 608 NNIESVRYLLSQHVDLTIE--------NKNGQSAIEVANQMQLNDIIELL 649
++ E L+ I + + + + +A + ++ L
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 92.9 bits (232), Expect = 4e-21
Identities = 33/178 (18%), Positives = 67/178 (37%), Gaps = 34/178 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ + + G +++ D + LH AC G L VK L++G V+
Sbjct: 66 AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PL A ++ D + LL L G ++
Sbjct: 126 HTPLFNACVSGSWDCVNLL---------------------------------LQHGASVQ 152
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+S +P+H A ++E V L++ ++ + + + + +A + Q ++ L
Sbjct: 153 -PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209
Score = 91.8 bits (229), Expect = 1e-20
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 10/156 (6%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
+GA ++ D L AC G D V L++G SV ++ SP+HEA +
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVE 171
Query: 546 IIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYLLAGINLNQVDSIGLTPL 601
+ L G ++ + + L A +K+L L +G ++NQ +PL
Sbjct: 172 CVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKL---LESGADVNQ-GKGQDSPL 226
Query: 602 HAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
HA V + E L+ D +N G+ +E+
Sbjct: 227 HAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262
Score = 82.2 bits (204), Expect = 2e-17
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 34/148 (22%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
+H A G ++ + G +V+I +SPLHEA + +++L
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL----------- 111
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L G +N V + TPL A ++ + + V LL
Sbjct: 112 ----------------------LKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
+ E+ + S I A + + + L
Sbjct: 150 SVQPES-DLASPIHEAARRGHVECVNSL 176
Score = 80.2 bits (199), Expect = 9e-17
Identities = 22/135 (16%), Positives = 51/135 (37%), Gaps = 5/135 (3%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
+GA + D + +H A G ++ V + G ++ + ++ +PL+ A Q
Sbjct: 146 QHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204
Query: 546 IIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL-AGINLNQVDSIGLTPLHAA 604
++ L GA + N+ L + L+ G + ++ G P+
Sbjct: 205 CVKKLLESGADV-NQGKGQDSPLHAVVRTASEELAC-LLMDFGADTQAKNAEGKRPVELV 262
Query: 605 VLNNNIESVRYLLSQ 619
+ + + +L +
Sbjct: 263 PPESPLAQL-FLERE 276
Score = 59.8 bits (146), Expect = 6e-10
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 45/150 (30%)
Query: 505 ACSVGKLDIVKYCLENGVSVHIRDNYD-----ISPLHEAVIADQHDIIRLLRHCGAHLTN 559
S + G + D P IRLL +
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----IRLLSN------- 50
Query: 560 EPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + V +P+H A ++ + S+R L+SQ
Sbjct: 51 ---------------------------PLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQ 81
Query: 620 HVDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ I + S + A +++L
Sbjct: 82 GWAVNIITADHVSPLHEACLGGHLSCVKIL 111
Score = 52.9 bits (128), Expect = 1e-07
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
GAD++ + + LH ++ ++ G ++ P+
Sbjct: 211 ESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLA 269
Query: 546 IIRLLRHCGAHLTNEP 561
+ L R GA L +P
Sbjct: 270 QLFLERE-GASL-PKP 283
Score = 28.2 bits (64), Expect = 7.8
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIV 514
VR + + ++GAD + + + + L +
Sbjct: 229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 89.8 bits (224), Expect = 4e-21
Identities = 39/181 (21%), Positives = 70/181 (38%), Gaps = 35/181 (19%)
Query: 472 AVREGDIDKIKE-MQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
A + GD++ +K+ + + + LH A ++ +V+Y L++G VH +D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+ PLH A +++ LL + G +
Sbjct: 75 GLVPLHNACSYGHYEVAELL---------------------------------VKHGAVV 101
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
N D TPLH A E + LL D T +N++G + +++ DI +LL+
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT-DIQDLLR 160
Query: 651 S 651
Sbjct: 161 G 161
Score = 76.3 bits (189), Expect = 2e-16
Identities = 29/148 (19%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + ++ + +GAD+ D LH ACS G ++ + +++G V++ D +
Sbjct: 49 AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLHEA +++I +LL L G +
Sbjct: 109 FTPLHEAAAKGKYEICKLL---------------------------------LQHGADPT 135
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + G TPL + + + L
Sbjct: 136 KKNRDGNTPLDLVK-DGDTDIQDLLRGD 162
Score = 49.3 bits (119), Expect = 4e-07
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQH- 544
+GA +++ D + LH A + GK +I K L++G ++ +PL D
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV--KDGDT 153
Query: 545 DIIRLLRHCGA 555
DI LLR A
Sbjct: 154 DIQDLLRGDAA 164
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 89.6 bits (223), Expect = 2e-20
Identities = 32/172 (18%), Positives = 53/172 (30%), Gaps = 39/172 (22%)
Query: 486 NYGADISMTDFDRRN---ILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIAD 542
R N +L A G+L++V+ ++ + I+ LH A+
Sbjct: 6 RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGA 65
Query: 543 QHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
+ I+ L + AG N+N DS G TPLH
Sbjct: 66 NYSIVDFL---------------------------------ITAGANVNSPDSHGWTPLH 92
Query: 603 AAVLNNNIESVRYLLSQHVDLTIEN-KNGQSAIEVANQMQLN--DIIELLKS 651
A N+ L+ + +G +A E + + D L
Sbjct: 93 CAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD 144
Score = 84.2 bits (209), Expect = 1e-18
Identities = 30/174 (17%), Positives = 61/174 (35%), Gaps = 4/174 (2%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
L A G+++ +++ D S + + LH A IV + + G +V+
Sbjct: 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAA-ARGMIKRLQSYL 584
D++ +PLH A + I L GA + + G R +YL
Sbjct: 83 PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142
Query: 585 LA-GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
++ ++S + L E + + + V + + ++ A
Sbjct: 143 ADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWA 195
Score = 76.1 bits (188), Expect = 8e-16
Identities = 20/165 (12%), Positives = 44/165 (26%), Gaps = 5/165 (3%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A+ + + + GA+++ D LH A S I +++G ++ D
Sbjct: 61 AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD 120
Query: 532 -ISPLHEAVIADQ--HDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGI 588
+ + + D L + + L +
Sbjct: 121 GATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAVYALWDYSAEFGDELSFREGESV 179
Query: 589 NLNQVDSIGLTPLHAAVLNNNIESV-RYLLSQHVDLTIENKNGQS 632
+ + D T A L+ V R + + +
Sbjct: 180 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQRSKVKH 224
Score = 62.7 bits (153), Expect = 3e-11
Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 36/141 (25%)
Query: 514 VKYCLENGVSVHIRDNYDISP---LHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTN 570
++ L S ++P L +A + + ++++
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQA-------------------- 40
Query: 571 AAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNG 630
+ + +Q + G+T LH A+ N V +L++ ++ + +G
Sbjct: 41 -------------VKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 631 QSAIEVANQMQLNDIIELLKS 651
+ + A I L
Sbjct: 88 WTPLHCAASCNDTVICMALVQ 108
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 87.1 bits (217), Expect = 3e-20
Identities = 31/181 (17%), Positives = 69/181 (38%), Gaps = 35/181 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A GD++++ + +++ + R L +G +I + L G + ++D
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTG 70
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ +H+A A D ++ L L ++N
Sbjct: 71 FAVIHDAARAGFLDTLQTL---------------------------------LEFQADVN 97
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQH-VDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D+ G PLH A ++ V +L+ ++ N G +A ++A N+++ L++
Sbjct: 98 IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Query: 651 S 651
+
Sbjct: 158 A 158
Score = 78.2 bits (194), Expect = 4e-17
Identities = 27/134 (20%), Positives = 40/134 (29%), Gaps = 32/134 (23%)
Query: 486 NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHD 545
GA+ + D ++H A G LD ++ LE V+I DN PLH A
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 546 IIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAV 605
++ L A N+ + G T A
Sbjct: 118 VVEFLVKHTA--------------------------------SNVGHRNHKGDTACDLAR 145
Query: 606 LNNNIESVRYLLSQ 619
L E V + +
Sbjct: 146 LYGRNEVVSLMQAN 159
Score = 76.7 bits (190), Expect = 1e-16
Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 34/148 (22%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L +A + G L+ + L+N V+V+ ++ + + L + +I R L
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRL----------- 56
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
LL G N + D G +H A +++++ LL
Sbjct: 57 ----------------------LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
D+ IE+ G + +A + ++E L
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFL 122
Score = 50.1 bits (121), Expect = 2e-07
Identities = 19/85 (22%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG-VSVHIRDNY 530
A R G +D ++ + + AD+++ D + LH A G L +V++ +++ +V R++
Sbjct: 77 AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 531 DISPLHEAVIADQHDIIRLLRHCGA 555
+ A + +++++ L++ GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 83.6 bits (208), Expect = 2e-19
Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 35/165 (21%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
I M L TA + G+++ V+ LE G + + + P+ + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVA 60
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLT-PLHAAVL 606
LL LL G N D LT P+H A
Sbjct: 61 ELL---------------------------------LLHGAEPNCADPATLTRPVHDAAR 87
Query: 607 NNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
++++ L L + + G+ +++A + DI L +
Sbjct: 88 EGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132
Score = 78.3 bits (194), Expect = 2e-17
Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 35/152 (23%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G ++ ++++ GAD + + R + G + + L +G + D
Sbjct: 19 AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77
Query: 532 I-SPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+ P+H+A D + +L GA L
Sbjct: 78 LTRPVHDAAREGFLDTLVVLHRAGA---------------------------------RL 104
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVD 622
+ D+ G P+ A + + RYL + D
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136
Score = 56.3 bits (137), Expect = 1e-09
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI 645
++ + L A +E+VR LL D N+ G+ I+V +
Sbjct: 1 GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA-QV 59
Query: 646 IELL 649
ELL
Sbjct: 60 AELL 63
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 86.0 bits (214), Expect = 2e-19
Identities = 34/189 (17%), Positives = 73/189 (38%), Gaps = 38/189 (20%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
AL ++A + + +Q+ + D + L+ A ++I K ++ G +++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67
Query: 527 RDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLA 586
+++ SP A + +I+ + L +A
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYM-----------------LKHATP------------- 97
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ-HVDLTIENKNGQSAIEVANQMQLN-- 643
+LN+ + G L A +I++V+ LL D+ +N G +A+ A ++
Sbjct: 98 --DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQ 155
Query: 644 ---DIIELL 649
DI++LL
Sbjct: 156 LYQDIVKLL 164
Score = 82.9 bits (206), Expect = 2e-18
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 34/158 (21%)
Query: 493 MTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRH 552
M ++ +L A + + + V D +PL+ AV + +I + L
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL-- 58
Query: 553 CGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIES 612
+ G ++N +SI +P A E
Sbjct: 59 -------------------------------IDRGADINLQNSISDSPYLYAGAQGRTEI 87
Query: 613 VRYLLSQH-VDLTIENKNGQSAIEVANQMQLNDIIELL 649
+ Y+L DL N+ G +A+ A + D ++LL
Sbjct: 88 LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Score = 75.2 bits (186), Expect = 9e-16
Identities = 32/157 (20%), Positives = 61/157 (38%), Gaps = 9/157 (5%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENG-VSVHIRDNY 530
AV DI+ K + + GADI++ + + A + G+ +I+ Y L++ ++ + Y
Sbjct: 46 AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY 105
Query: 531 DISPLHEAVIADQHDIIR-LLRHCGAHLTNEPMFLGD-VLTNAAARGMIKRLQ----SYL 584
+ L A D ++ LL + + G L A +L L
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLL 164
Query: 585 L-AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQH 620
+ G + + D+ G T + A E + L +
Sbjct: 165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201
Score = 31.3 bits (72), Expect = 0.71
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 464 LYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLE 519
L A+ + D +K + GAD S+ D R + A G +I K +
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 85.7 bits (213), Expect = 5e-19
Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 30/188 (15%)
Query: 472 AVREGDIDKIKEM-QNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI---- 526
A +E D+ + ++ + G ++ LH A L+ +E +
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69
Query: 527 -RDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL 585
+ LH AVI +++R L GA V +A A G + +
Sbjct: 70 SELYEGQTALHIAVINQNVNLVRALLARGA----------SV--SARATGSVFHYRP--- 114
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA----NQMQ 641
+ + G PL A + E VR L+ D+ ++ G + + + N+
Sbjct: 115 -----HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTF 169
Query: 642 LNDIIELL 649
+ LL
Sbjct: 170 ACQMYNLL 177
Score = 77.3 bits (191), Expect = 3e-16
Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 30/174 (17%)
Query: 487 YGADISMTDFDRRNI-----LHTACSVGKLDIVKYCLENGVSVHIRDNYDIS-------- 533
++ LH A +++V+ L G SV R +
Sbjct: 59 AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118
Query: 534 -----PLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD-VLTNAAARG---MIKRLQSYL 584
PL A +I+RLL GA + LG+ VL + ++ + L
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLL 177
Query: 585 L---AGIN----LNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ 631
L G + ++ GLTP A + NI ++L+ + + + +
Sbjct: 178 LSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 47.6 bits (114), Expect = 4e-06
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 596 IGLTPLHAAVLNNNIESV-RYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
I +PL A N+++++ + L + ++ G++A+ +A + +L
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56
Score = 42.2 bits (100), Expect = 2e-04
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 10/95 (10%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVS-------- 523
A G + ++ + +GADI D +LH +S
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187
Query: 524 --VHIRDNYDISPLHEAVIADQHDIIRLLRHCGAH 556
+ +N ++P A + + + L H
Sbjct: 188 SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Score = 36.0 bits (84), Expect = 0.022
Identities = 5/69 (7%), Positives = 20/69 (28%), Gaps = 10/69 (14%)
Query: 472 AVREGDIDKIKEMQN----YGADI------SMTDFDRRNILHTACSVGKLDIVKYCLENG 521
+ + + +M N Y + + A G + + ++ ++
Sbjct: 161 LILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220
Query: 522 VSVHIRDNY 530
+ ++
Sbjct: 221 KHIAAAHHH 229
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 86.8 bits (216), Expect = 5e-19
Identities = 31/180 (17%), Positives = 66/180 (36%), Gaps = 37/180 (20%)
Query: 471 SAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
S + ++K + D D + + A + + +V L G ++ +N
Sbjct: 5 SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE 63
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
PLH+A + I+++L L +G++
Sbjct: 64 --FPLHQAATLEDTKIVKIL---------------------------------LFSGLDD 88
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNG-QSAIEVANQMQLNDIIELL 649
+Q D G T L+ AV + N+++V+ + ++ L K G +++ A + I+
Sbjct: 89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148
Score = 84.5 bits (210), Expect = 3e-18
Identities = 33/179 (18%), Positives = 63/179 (35%), Gaps = 37/179 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A+ + ++ + + N GA ++ + LH A ++ IVK L +G+ D+
Sbjct: 38 AIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ L+ AV + ++L + L
Sbjct: 96 NTALYYAVDSGNMQTVKLF---------------------------------VKKNWRLM 122
Query: 592 QVDSIGL-TPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G T + AV+ N++ V Y LS + T + S I + + D++ LL
Sbjct: 123 FYGKTGWKTSFYHAVMLNDVSIVSYFLS-EIPSTFDLAILLSCIHITIKNGHVDMMILL 180
Score = 81.4 bits (202), Expect = 4e-17
Identities = 33/192 (17%), Positives = 64/192 (33%), Gaps = 18/192 (9%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFD-RRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
AV G++ +K + + + A + + IV Y L
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAI 160
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGD--VLTNAAARGMIKRLQSYLL-AG 587
+S +H + D++ LL N L + A I+ LQ L
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQ-ALFKYD 218
Query: 588 INLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ----MQLN 643
IN+ + VL ++ E + ++ +HV+ ++ I N+ + N
Sbjct: 219 INIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKN 271
Query: 644 DIIELLKSSETK 655
+ L+ + K
Sbjct: 272 KELRLMYVNCVK 283
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 80.5 bits (200), Expect = 2e-18
Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 33/148 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G ++ +K + GAD++ D + R LH A G L++VK LE G V+ +D
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A ++++LL L AG ++N
Sbjct: 69 RTPLHLAARNGHLEVVKLL---------------------------------LEAGADVN 95
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
D G TPLH A N ++E V+ LL
Sbjct: 96 AKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 79.3 bits (197), Expect = 7e-18
Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 33/148 (22%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
LH A G L++VK LE G V+ +D +PLH A ++++LL
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL----------- 54
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L AG ++N D G TPLH A N ++E V+ LL
Sbjct: 55 ----------------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELL 649
D+ ++KNG++ + +A + ++++LL
Sbjct: 93 DVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 58.5 bits (143), Expect = 1e-10
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G ++ +K + GAD++ D + R LH A G L++VK LE G V+ +D
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 101
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAH 556
+PLH A ++++LL GA+
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGAY 126
Score = 45.8 bits (110), Expect = 3e-06
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G TPLH A N ++E V+ LL D+ ++KNG++ + +A + ++++LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 80.9 bits (201), Expect = 3e-18
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 33/150 (22%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
L A G+ D V+ + NG V+ +D Y ++PL+ A +I+ +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL----------- 66
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L G ++N VD+IG TPLH A ++E LL
Sbjct: 67 ----------------------LKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELLKS 651
D+ ++K G++A +++ D+ E+L+
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDLAEILQK 134
Score = 79.7 bits (198), Expect = 6e-18
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 33/147 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D L+ A + G L+IV+ L+NG V+ D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A +I +L L G ++N
Sbjct: 81 FTPLHLAAFIGHLEIAEVL---------------------------------LKHGADVN 107
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYLLS 618
D G T ++ N N + L
Sbjct: 108 AQDKFGKTAFDISIGNGNEDLAEILQK 134
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 78.6 bits (195), Expect = 9e-18
Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 35/146 (23%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
G D LH A G + VK L G V+ R +PLH A +I+
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLN 607
+LL L G ++N G TP H A N
Sbjct: 59 KLL---------------------------------LAKGADVNARSKDGNTPEHLAKKN 85
Query: 608 NNIESVRYLLSQHVDLTIENKNGQSA 633
+ E V+ L ++ D+ +
Sbjct: 86 GHHEIVKLLDAKGADVNARSWGSSHH 111
Score = 60.1 bits (147), Expect = 2e-11
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 33/131 (25%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A + G +++K++ + GAD++ D LH A G +IVK L G V+ R
Sbjct: 16 AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+P H A H+I++LL G ++N
Sbjct: 76 NTPEHLAKKNGHHEIVKLL---------------------------------DAKGADVN 102
Query: 592 QVDSIGLTPLH 602
H
Sbjct: 103 ARSWGSSHHHH 113
Score = 48.5 bits (117), Expect = 3e-07
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
G G TPLH A N + E V+ LLS+ D+ +K+G + + +A + +I+
Sbjct: 1 GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
Query: 647 ELL 649
+LL
Sbjct: 59 KLL 61
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 79.4 bits (197), Expect = 1e-17
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 35/165 (21%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A G +++++ + GA+ + + R + G + + L +G + D
Sbjct: 19 AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPAT 77
Query: 532 I-SPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
+ P+H+A D + +L AG L
Sbjct: 78 LTRPVHDAAREGFLDTLVVL---------------------------------HRAGARL 104
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIE 635
+ D+ G P+ A + + RYL + N A E
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 78.3 bits (194), Expect = 3e-17
Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 37/165 (22%)
Query: 488 GADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDII 547
A SM + L TA + G+++ V+ LE G + + ++Y P+ + +
Sbjct: 4 AAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVA 60
Query: 548 RLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLT-PLHAAVL 606
LL LL G N D LT P+H A
Sbjct: 61 ELL---------------------------------LLHGAEPNCADPATLTRPVHDAAR 87
Query: 607 NNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLKS 651
++++ L L + + G+ +++A ++ D+ L++
Sbjct: 88 EGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
Score = 48.2 bits (116), Expect = 7e-07
Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 3/64 (4%)
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI 645
+ L A +E VR LL + N G+ I+V +
Sbjct: 3 PAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA-RV 59
Query: 646 IELL 649
ELL
Sbjct: 60 AELL 63
Score = 44.0 bits (105), Expect = 2e-05
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 5/75 (6%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A REG +D + + GA + + D R + A +G D+ +Y +
Sbjct: 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN--- 141
Query: 532 ISPLHEAVIADQHDI 546
DI
Sbjct: 142 --HARIDAAEGPSDI 154
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 82.4 bits (203), Expect = 3e-17
Identities = 30/186 (16%), Positives = 59/186 (31%), Gaps = 20/186 (10%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVG---KLDIVKYCLE-NGVSVHIR 527
+++ +K + +G++ D + L A + L+ + +
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197
Query: 528 DNYDISPLHEAVIADQHD------------IIRLLRHCGAHLTNEPMFLGDVLTNAAARG 575
D+ + + LH +I ++ + + N
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257
Query: 576 ----MIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ 631
+++ L + LN DS G T L+ A NI V LL D I NK+G
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317
Query: 632 SAIEVA 637
++
Sbjct: 318 RPVDFG 323
Score = 68.5 bits (167), Expect = 1e-12
Identities = 35/212 (16%), Positives = 70/212 (33%), Gaps = 38/212 (17%)
Query: 424 NIRGELSTDAIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDIDKIKE 483
++ E + E+ + E + F S ++E +
Sbjct: 60 KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP-- 117
Query: 484 MQNYGADISM-TDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIAD 542
N ++++ D LH S+ L++VK+ +++G + DN S L +AV +
Sbjct: 118 --NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS- 174
Query: 543 QHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLH 602
N G + L YL L DS+ T LH
Sbjct: 175 --------------------------VNNYDSGTFEALLDYL--YPCLILEDSMNRTILH 206
Query: 603 AAVLNNNI----ESVRYLLSQHVDLTIENKNG 630
++ + + + +Y L + ++ +N
Sbjct: 207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238
Score = 64.7 bits (157), Expect = 2e-11
Identities = 29/190 (15%), Positives = 60/190 (31%), Gaps = 19/190 (10%)
Query: 479 DKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIR----------- 527
D I + D D + D+ L + + +
Sbjct: 2 DDINKGP--SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQ 59
Query: 528 DNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL-A 586
+ L + + ++ L + ++ +E + + +++ +
Sbjct: 60 KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119
Query: 587 GINLN-QVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQS----AIEVANQMQ 641
+NLN VD G TPLH N+E V++L+ + + G+S A++ N
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 179
Query: 642 LNDIIELLKS 651
LL
Sbjct: 180 SGTFEALLDY 189
Score = 47.3 bits (112), Expect = 9e-06
Identities = 12/90 (13%), Positives = 30/90 (33%)
Query: 450 HLSGRQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVG 509
+ + +K P ++ ++ + ++ D + L+ A +G
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLG 294
Query: 510 KLDIVKYCLENGVSVHIRDNYDISPLHEAV 539
+ IV L+ G I + + P+
Sbjct: 295 NISIVDALLDYGADPFIANKSGLRPVDFGA 324
Score = 39.6 bits (92), Expect = 0.003
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 16/134 (11%)
Query: 488 GADISMTDFDRRNILH----TACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQ 543
+ + D R ILH T+ G KY L+ + ++ +
Sbjct: 191 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250
Query: 544 HDIIRLLRHCGAHLTNEPMFLGDVLTNA-----------AARGMIKRLQSYLL-AGINLN 591
+ R + ++ + NA AAR + LL G +
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 310
Query: 592 QVDSIGLTPLHAAV 605
+ GL P+
Sbjct: 311 IANKSGLRPVDFGA 324
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 77.2 bits (191), Expect = 1e-16
Identities = 32/181 (17%), Positives = 51/181 (28%), Gaps = 38/181 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
++G AD+ + TA + LE V D
Sbjct: 21 EWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENG 76
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ L +RLL AG +L+
Sbjct: 77 RTALLFVAGLGSDKCVRLL---------------------------------AEAGADLD 103
Query: 592 QVDSI-GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D GLT LH A E V L+ D+ +E++ G +A+E+A ++
Sbjct: 104 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163
Query: 651 S 651
Sbjct: 164 Q 164
Score = 62.9 bits (154), Expect = 1e-11
Identities = 21/149 (14%), Positives = 37/149 (24%), Gaps = 38/149 (25%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
G V + +P A + L
Sbjct: 18 YLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQL----------- 63
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L +++ VD G T L + + VR L
Sbjct: 64 -----------------------LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100
Query: 622 DLTI-ENKNGQSAIEVANQMQLNDIIELL 649
DL + + G +A+ +A +++E L
Sbjct: 101 DLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Score = 52.1 bits (126), Expect = 6e-08
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDF-DRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
G ++ + GAD+ D LH A + ++V+ +E G + + D
Sbjct: 83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 142
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHL 557
++ L A + G +
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRI 169
Score = 40.9 bits (97), Expect = 3e-04
Identities = 6/63 (9%), Positives = 14/63 (22%), Gaps = 3/63 (4%)
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
I ++ G + + S D ++ A + +
Sbjct: 4 KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQAL 60
Query: 647 ELL 649
L
Sbjct: 61 SQL 63
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 77.6 bits (192), Expect = 4e-16
Identities = 32/181 (17%), Positives = 51/181 (28%), Gaps = 38/181 (20%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
++G AD+ + TA + LE V D
Sbjct: 22 EWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENG 77
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+ L +RLL AG +L+
Sbjct: 78 RTALLFVAGLGSDKCVRLL---------------------------------AEAGADLD 104
Query: 592 QVDSI-GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D GLT LH A E V L+ D+ +E++ G +A+E+A ++
Sbjct: 105 HRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 164
Query: 651 S 651
Sbjct: 165 Q 165
Score = 76.1 bits (188), Expect = 1e-15
Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 35/184 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R+ D + ++ D+ D + R L +G V+ E G + RD
Sbjct: 52 AARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110
Query: 532 -ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
++ LH A + +++ L + G ++
Sbjct: 111 GLTALHMAAGYVRPEVVEAL---------------------------------VELGADI 137
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELLK 650
D GLT L A + + +E +V ++++I+E
Sbjct: 138 EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRG 197
Query: 651 SSET 654
+
Sbjct: 198 KGKD 201
Score = 71.1 bits (175), Expect = 6e-14
Identities = 20/167 (11%), Positives = 46/167 (27%), Gaps = 14/167 (8%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDF-DRRNILHTACSVGKLDIVKYCLENGVSVHIRDNY 530
G ++ + GAD+ D LH A + ++V+ +E G + + D
Sbjct: 84 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINL 590
++ L A + G + E + + +
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEY--------AEVDEI 192
Query: 591 NQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVA 637
+ G + + + + K+ + +E A
Sbjct: 193 VEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE--DVAKDYEDGLEYA 237
Score = 60.7 bits (148), Expect = 2e-10
Identities = 21/149 (14%), Positives = 37/149 (24%), Gaps = 38/149 (25%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
G V + +P A + L
Sbjct: 19 YLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQL----------- 64
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
L +++ VD G T L + + VR L
Sbjct: 65 -----------------------LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 101
Query: 622 DLTI-ENKNGQSAIEVANQMQLNDIIELL 649
DL + + G +A+ +A +++E L
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Score = 39.9 bits (94), Expect = 0.001
Identities = 6/64 (9%), Positives = 15/64 (23%), Gaps = 3/64 (4%)
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI 645
I ++ G + + S D+ ++ A +
Sbjct: 4 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQA 60
Query: 646 IELL 649
+ L
Sbjct: 61 LSQL 64
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 77.1 bits (190), Expect = 7e-16
Identities = 30/167 (17%), Positives = 51/167 (30%), Gaps = 33/167 (19%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI-------------LHTACSVGKLDIVKYCL 518
A+ + + +K + GAD+ + R L A + D+V Y L
Sbjct: 97 AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156
Query: 519 ENGV---SVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARG 575
EN S+ D+ + LH V+ + G
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI-----------------HMYDG 199
Query: 576 MIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVD 622
+++ + GLTPL A IE R++L +
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246
Score = 64.0 bits (156), Expect = 2e-11
Identities = 24/156 (15%), Positives = 42/156 (26%), Gaps = 34/156 (21%)
Query: 496 FDRRNILHTACSVGKLDIVKYCLE--------NGVSVHIRDNYDISPLHEAVIADQH--- 544
FDR + L + S G + + LE S + + + L +AV+ Q
Sbjct: 1 FDR-DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVN 59
Query: 545 DIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAA 604
I L N L G + LH A
Sbjct: 60 ACIMPLLQIDKDSGNPK----------------------PLVNAQCTDEFYQGHSALHIA 97
Query: 605 VLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQM 640
+ +++ V+ L+ D+ +
Sbjct: 98 IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCF 133
Score = 39.4 bits (92), Expect = 0.002
Identities = 9/62 (14%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLE---NGVSVHIRD 528
+ +G + + +++ L A GK++I ++ L+ +G + H
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
Query: 529 NY 530
++
Sbjct: 255 HH 256
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 70.3 bits (173), Expect = 6e-15
Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 36/146 (24%)
Query: 505 ACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFL 564
S + G + + L EA A Q D +R+L
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRIL-------------- 43
Query: 565 GDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
+ G ++ D G TPLH A N ++E V+ LL D+
Sbjct: 44 -------------------MANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84
Query: 625 IENKNGQSAIEVANQMQLNDIIELLK 650
++K G++A +++ D+ E+L+
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 58.0 bits (141), Expect = 1e-10
Identities = 26/145 (17%), Positives = 43/145 (29%), Gaps = 36/145 (24%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
+ G+ + D L A G+ D V+ + NG V +D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLN 591
+PLH A ++++LL L AG ++
Sbjct: 58 STPLHLAARNGHLEVVKLL---------------------------------LEAGADVX 84
Query: 592 QVDSIGLTPLHAAVLNNNIESVRYL 616
D G T ++ N N + L
Sbjct: 85 AQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 55.7 bits (135), Expect = 9e-10
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G D+++ + GAD++ D + LH A G L++VK LE G V +D +
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 532 ISPLHEAVIADQHDIIRLLR 551
+ ++ D+ +L+
Sbjct: 91 KTAFDISIDNGNEDLAEILQ 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 69.3 bits (171), Expect = 7e-15
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 33/118 (27%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEP 561
LH A G L++VK LE G V+ +D +PLH A ++++LL
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL----------- 54
Query: 562 MFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
L AG ++N D G TPLH A N ++E V+ LL
Sbjct: 55 ----------------------LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 61.6 bits (151), Expect = 4e-12
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYD 531
A R G ++ +K + GAD++ D + R LH A G L++VK LE G V+ +D
Sbjct: 9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 532 ISPLHEAVIADQHDIIRLLRHCGAH 556
+PLH A ++++LL GA+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGAY 93
Score = 50.4 bits (122), Expect = 3e-08
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 583 YLL-AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQ 641
LL AG ++N D G TPLH A N ++E V+ LL D+ ++KNG++ + +A +
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Query: 642 LNDIIELL 649
++++LL
Sbjct: 80 HLEVVKLL 87
Score = 46.2 bits (111), Expect = 1e-06
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 597 GLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDIIELL 649
G TPLH A N ++E V+ LL D+ ++KNG++ + +A + ++++LL
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 70.6 bits (173), Expect = 1e-13
Identities = 33/179 (18%), Positives = 58/179 (32%), Gaps = 35/179 (19%)
Query: 477 DIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDIS--- 533
D +K+ N A + + + + LH A + +V +ENG V N D
Sbjct: 82 KTDSLKQFVN--ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKT 139
Query: 534 -----------PLHEAVIADQHDIIRLLRHCGAHL--TNEPMFLGD-VLTNAAARG---- 575
PL A +Q I++ L + +G+ VL
Sbjct: 140 KGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199
Query: 576 ----MIKRLQSYLL--------AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVD 622
+ + + +L + GLTPL A + I + Y+L + +
Sbjct: 200 DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258
Score = 63.6 bits (155), Expect = 2e-11
Identities = 21/155 (13%), Positives = 39/155 (25%), Gaps = 33/155 (21%)
Query: 487 YGADISMTDFDRRNILHTACSVGK-------LDIVKYCLENGVSVHIRDNYD-ISPLHEA 538
A R + A + L ++ + +D + L +A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 539 VIADQH---DIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDS 595
++ + D I LL + F+ +
Sbjct: 62 MLNLHNGQNDTIALLLDVARKTDSLKQFVNA----------------------SYTDSYY 99
Query: 596 IGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNG 630
G T LH A+ N+ V L+ D+
Sbjct: 100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Score = 37.8 bits (88), Expect = 0.008
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 467 ALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHI 526
F +++ + ++ +T+ L A S GK+ ++ Y L+
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------- 254
Query: 527 RDNYDISPLHEAVIADQHD 545
R+ ++ H A H
Sbjct: 255 REIHEPECRHAAAHHHHHH 273
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 64.0 bits (156), Expect = 2e-11
Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 38/167 (22%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNI--------------LHTACSVGKLDIVKYC 517
A+ ++ + GAD+ R L A + IV Y
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Query: 518 LENGVS---VHIRDNYDISPLHEAVIA--DQHDIIRLLRHCGAHLTNEPMFLGDVLTNAA 572
ENG + +D+ + LH V + + + + L
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL--------------- 204
Query: 573 ARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQ 619
+ + +++ GL+PL A I ++++ +
Sbjct: 205 ----LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247
Score = 60.2 bits (146), Expect = 3e-10
Identities = 21/146 (14%), Positives = 43/146 (29%), Gaps = 32/146 (21%)
Query: 495 DFDRRNILHTA---CSVGKLDIVKYCLENGVSV----HIRDNYDISPLHEAVI---ADQH 544
F+R + G ++ + L + + + + L +A++ A ++
Sbjct: 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRN 62
Query: 545 DIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAA 604
D I +L N F+ V G T LH A
Sbjct: 63 DTIPILLDIAEKTGNMREFINS----------------------PFRDVYYRGQTALHIA 100
Query: 605 VLNNNIESVRYLLSQHVDLTIENKNG 630
+ V L+ + D+ + +
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGR 126
Score = 33.2 bits (76), Expect = 0.20
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 19/103 (18%)
Query: 472 AVREGDIDKIK---EMQNYGADISMTDFDRRNILHTACSVGK---------LDIVKYCLE 519
A + E + AD+ D +LH ++ + L
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206
Query: 520 NGVSVH-------IRDNYDISPLHEAVIADQHDIIRLLRHCGA 555
+ + +N +SPL A + I + +
Sbjct: 207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249
Score = 28.2 bits (63), Expect = 7.5
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 502 LHTACSVGKLDIVKYCLENGVSVHIRDNY 530
L A GK+ I ++ + ++ ++
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIADAAAHHH 257
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 65.4 bits (159), Expect = 2e-11
Identities = 28/186 (15%), Positives = 55/186 (29%), Gaps = 24/186 (12%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDFDRRN---ILHTACSVGKLDIVKYCLENGVSVH 525
F+ A G + + + + N A G +++ + L+ V +
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226
Query: 526 IRDNYDISPLHEAV---IADQHDIIRLLR------HCGAHL---TNEPMFLGD-VLTNAA 572
+ ++ + V IA + ++ + + T G +L N
Sbjct: 227 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI 286
Query: 573 ARG------MIKRLQS--YLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
R I+ L S + A + L A+ N + LLS L
Sbjct: 287 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLA 346
Query: 625 IENKNG 630
+ N
Sbjct: 347 LTKANN 352
Score = 53.8 bits (129), Expect = 1e-07
Identities = 22/229 (9%), Positives = 53/229 (23%), Gaps = 40/229 (17%)
Query: 406 VLSKSELTLQQKKDIMMTNIRGELSTDAIHNNELDLAAAVAKTL---HLSGRQELNKLKK 462
+ + + ++ + L I NEL L K L G + + ++++
Sbjct: 6 IHNIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ 65
Query: 463 ILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGV 522
+L L+ + + G + F + LD + L +
Sbjct: 66 LL--CLYYAHYNRNAKQLWSDAHKKGIKSEVICF----VAAITGCSSALDTLCLLLTSDE 119
Query: 523 SVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQS 582
V + + A ++ L
Sbjct: 120 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAP--------------------------- 152
Query: 583 YLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQ 631
+ + + A N ++ + L +
Sbjct: 153 ----TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 197
Score = 42.6 bits (100), Expect = 3e-04
Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 2/69 (2%)
Query: 571 AAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENK-- 628
+ L L + + + + A N ++ + L +
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161
Query: 629 NGQSAIEVA 637
A +A
Sbjct: 162 ENYHAFRLA 170
Score = 31.5 bits (71), Expect = 0.83
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 472 AVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVH 525
A+R G+ + + + +++T N + + G+LD+ LE+ H
Sbjct: 326 ALRLGNQGACALLLSIPSVLALTK---ANNYYINETGGRLDLRAVALEHHHHHH 376
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 63.5 bits (154), Expect = 5e-11
Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 14/149 (9%)
Query: 515 KYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDV------- 567
KY D ++ + +P+ D
Sbjct: 138 KY--VEHRFARRCTPEPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELV 193
Query: 568 LTNAAARGMIKRL---QSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLT 624
L A L + G +L+ + G T LH A L N + ++ LL +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253
Query: 625 IENKNGQSAIEVANQMQLNDIIELLKSSE 653
N+ G++A+++A + + ELL+ ++
Sbjct: 254 TVNEAGETALDIARKKHHKECEELLEQAQ 282
Score = 55.0 bits (132), Expect = 3e-08
Identities = 13/67 (19%), Positives = 20/67 (29%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDI 546
G + D LH A + D +K L+ V + + L A +
Sbjct: 215 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 274
Query: 547 IRLLRHC 553
LL
Sbjct: 275 EELLEQA 281
Score = 52.3 bits (125), Expect = 2e-07
Identities = 29/161 (18%), Positives = 49/161 (30%), Gaps = 42/161 (26%)
Query: 465 YPALFQSAVREGDIDKIKEMQNYGADISMTDF------DRRNILHTACSVGK---LDIVK 515
P +A+ D+ + E G D +LH A V L +V
Sbjct: 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVD 210
Query: 516 YCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARG 575
+ ++NG + + + LH A + +Q D ++LL
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL------------------------- 245
Query: 576 MIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYL 616
L + V+ G T L A ++ E L
Sbjct: 246 --------LKGRALVGTVNEAGETALDIARKKHHKECEELL 278
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 5e-11
Identities = 83/653 (12%), Positives = 181/653 (27%), Gaps = 193/653 (29%)
Query: 28 EIVSIGNDNF--DHRFKYLQQVDQDERPLHQDSDRRASLTLNSSEDRLESKVLVLYTGGT 85
+I+S+ D F + K +Q + + + + + + L +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDM---PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 86 IGMEDNEQGALAPSSKPLTDKIRE---NPLLYDRHYDVC--KTQDGNVLVLPR------- 133
++ + L + K L I+ P + R Y + + N +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136
Query: 134 VKDTRRVLYKVVEYTPLLDSSNMCQVHWIKIANDIKEYYESYDGFVILHGTDTLSYTASA 193
R+ L + L + V++ G
Sbjct: 137 YLKLRQALLE-------LRPA----------------------KNVLIDG---------- 157
Query: 194 LSFMLENLGKPVIV--TGSQISIFQIRSDGVH--NFIGALILAGNYDIPE------VTVY 243
+L GK + + + N N + PE +
Sbjct: 158 ---VL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------KNCNSPETVLEMLQKLL 206
Query: 244 FN-----HKLIRGNRTVKMSVKEFDA-----FDSPNFPNLAKVGLTI--DVNMKSIFRSS 291
+ + +K+ + A S + N L + +V
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN----CLLVLLNVQNAKA---- 258
Query: 292 TIKKFDVQSQL--------NLNVGILRIYPHIS-NHTVRSFMQSPMEGVILLTYGSGNFP 342
F++ ++ + HIS +H + ++ +LL Y
Sbjct: 259 -WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKY----LD 312
Query: 343 SNRSDLIDELRLASDRNVIIVNCSQCSRGGTSDTYE-------AGKILSGIGVINGYDMT 395
DL E+ + R + I+ S T D ++ I S + V+ +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 396 ---------------PEAALTKLSYVLSKS--ELTLQQKKDIMMTNIRGELSTDAIHNNE 438
P L+ + + + KS + + + + + + ST +I +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 439 LDLAAAVAKTLHLSGRQELNKLKKIL--YP---ALFQSAVREGDIDK---------IKEM 484
L+L + L L++ I+ Y + +D+ +K +
Sbjct: 433 LEL------KVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 485 QNYGADISMT----DFD--RRNILHTA---CSVGKL-----DIVKYCLENGVSVHIRDNY 530
++ DF + I H + + G + + Y +I DN
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY------KPYICDN- 537
Query: 531 DISPLHEAVIADQHDIIRLLRHCGAHLTNEP---------MFLGDVLTNAAAR 574
P +E ++ + I+ L +L M + + A +
Sbjct: 538 --DPKYERLV---NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 46.8 bits (110), Expect = 2e-05
Identities = 71/475 (14%), Positives = 133/475 (28%), Gaps = 132/475 (27%)
Query: 259 VKEFDAFDSPNFPNLAKVGLTIDVNMKSIFRSSTIKKF----DVQSQLNLNVGILRIYPH 314
V FD D + P KSI I D S L
Sbjct: 30 VDNFDCKDVQDMP-------------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ- 75
Query: 315 ISNHTVRSFMQSPMEGVILLTYG--------SGNFPS----------------------- 343
V+ F+ E V+ + Y PS
Sbjct: 76 --EEMVQKFV----EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 344 --NRSDLIDELR-----LASDRNVIIVNCSQCSRGG------TSDTYEAGKILSGI--GV 388
+R +LR L +NV+I G D + K+ + +
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLI-----DGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 389 --IN-GYDMTPEAALTKLSYVLSKSELTLQQKKDIMMTNIRGELSTDAIHNNELDLAAAV 445
+N +PE L L +L + + + D +NI+ + + L +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQAELRRLLKSKPY 243
Query: 446 AKTL----HLSGRQELNKLK---KILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDR 498
L ++ + N KIL F+ + +++T +
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 499 RNILHTA--CSVGKL--DIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCG 554
+++L C L +++ +P ++IA +R
Sbjct: 304 KSLLLKYLDCRPQDLPREVLT----------------TNPRRLSIIA------ESIRDGL 341
Query: 555 AHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHA----AVL---- 606
A N D LT I+ + L D + + P A +L
Sbjct: 342 ATWDNWKHVNCDKLTTI-----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 607 -NNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDI-IELLKSSETKSKVH 659
+ V ++++ ++ K + + + + I +EL E + +H
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKE-----STISIPSIYLELKVKLENEYALH 446
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 62.3 bits (151), Expect = 8e-11
Identities = 25/158 (15%), Positives = 57/158 (36%), Gaps = 16/158 (10%)
Query: 515 KYCLENGVSVHIRDNYDISPLHEAVIA-----DQHDIIRLLRHCGAHLTNEPMFLGD--- 566
KY + + D + ++ D +++ P+ G
Sbjct: 113 KYMERRYAR---KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPD 169
Query: 567 -----VLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHV 621
+ + R + + + NL++ G T LH L +N E ++ LL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA 229
Query: 622 DLTIENKNGQSAIEVANQMQLNDIIELLKSSETKSKVH 659
+ I N++G++ +++A +++ ELL + +
Sbjct: 230 SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS 267
Score = 54.6 bits (131), Expect = 3e-08
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 472 AVREGDIDKIKEMQ---NYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRD 528
AVR D + + ++ LH C + +K L S+ I +
Sbjct: 176 AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN 235
Query: 529 NYDISPLHEAVIADQHDIIRLLRHC 553
+PL A LL
Sbjct: 236 ESGETPLDIAKRLKHEHCEELLTQA 260
Score = 50.0 bits (119), Expect = 8e-07
Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 49/174 (28%)
Query: 469 FQSAVREGDIDKIKEMQNYGADISMTDF------DRRNILHTACSVGK---LDIVKYCLE 519
AV+ DI + + G D++ LH A L IV + ++
Sbjct: 134 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ 193
Query: 520 NGVSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKR 579
N ++ + + LH + D + ++LL
Sbjct: 194 NSGNLDKQTGKGSTALHYCCLTDNAECLKLL----------------------------- 224
Query: 580 LQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYL-------LSQHVDLTIE 626
L ++ + G TPL A + L + HV + E
Sbjct: 225 ----LRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 274
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 4e-10
Identities = 112/668 (16%), Positives = 195/668 (29%), Gaps = 251/668 (37%)
Query: 5 DDLGDPSSLED---KF-DF------SNGSDNSIEIVSIGNDNFDHRFKYLQQVDQDERPL 54
DD +P++ + KF + + +++++ F++ + L+ D +
Sbjct: 51 DD--EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY--LEGND-----I 101
Query: 55 HQDSDRRASLTLNSSEDRLESKVLVL--YTGGTIGMEDNEQGALAPSSKPLTDKIRENPL 112
H A L + +++K L+ T A + +P K + L
Sbjct: 102 H---ALAAKLLQENDTTLVKTKELIKNYIT------------ARIMAKRPFD-KKSNSAL 145
Query: 113 LYD------RHYDVCKTQDGNVLV----LPRVKDTRRVLYKVVEYTPLLD-----SSNMC 157
+ + Q GN L R LY+ Y L+ S+
Sbjct: 146 FRAVGEGNAQLVAIFGGQ-GNTDDYFEEL-------RDLYQT--YHVLVGDLIKFSAETL 195
Query: 158 QVHWIKIANDIKEYYESYDGFVI---LHGTDTL---SYTASA-LSFMLENLGKPVIVTGS 210
I+ D ++ + G I L Y S +S P+I
Sbjct: 196 S-ELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYLLSIPISC-------PLIG--- 242
Query: 211 QISIFQIRSDGVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTVKMSVKEFDAFDS-PN 269
+ Q+ H ++ L G + E+ Y V DS +
Sbjct: 243 ---VIQL----AH-YVVTAKLLG-FTPGELRSYLKGATGHSQGLVTAVA--IAETDSWES 291
Query: 270 FPNLAKVGLTIDVNMKSIFRSSTIKKFDVQSQLNLNVGILRIYPH--ISNHTVRSFMQ-- 325
F + +T+ +F V+ YP+ + + ++
Sbjct: 292 FFVSVRKAITV------LFFIG------VRCY--------EAYPNTSLPPSILEDSLENN 331
Query: 326 ----SPMEGVILLTYGSGNFPSNRSDLIDELRLASDRNVIIVNCSQCSRGGTSDTYEAGK 381
SPM + LT + + D + N AGK
Sbjct: 332 EGVPSPMLSISNLT---------QEQVQDYVNK--------TNSHL----------PAGK 364
Query: 382 ILSGIGVINGYDMT----PEAALTKLSYVL--SKSELTLQQKKDIMMTNIRGELSTDAIH 435
+ I ++NG P +L L+ L +K+ L Q
Sbjct: 365 QVE-ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQ------------------- 404
Query: 436 NNELDLAAAVAKTLHLSGRQELNKLK------KILYPALFQSAVREGDIDKIKEMQNYGA 489
++ S R KLK + P F S + D I +
Sbjct: 405 ----------SRIPF-SER----KLKFSNRFLPVASP--FHSHLLVPASDLINK------ 441
Query: 490 DISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAV---IADQHDI 546
D + N+ A + I Y D D+ L ++ I D I
Sbjct: 442 -----DLVKNNVSFNAKD---IQIPVY--------DTFDGSDLRVLSGSISERIVDC--I 483
Query: 547 IRL------LRHCGA-HLTNEPMF-------LGDVLT--NAAARGMIKRLQSYLLAG-IN 589
IRL A H+ + F LG LT N G+ R+ ++AG ++
Sbjct: 484 IRLPVKWETTTQFKATHILD---FGPGGASGLGV-LTHRNKDGTGV--RV---IVAGTLD 534
Query: 590 LNQVDSIG 597
+N D G
Sbjct: 535 INPDDDYG 542
Score = 55.8 bits (134), Expect = 4e-08
Identities = 56/332 (16%), Positives = 107/332 (32%), Gaps = 108/332 (32%)
Query: 103 LTDKIRENPLLYDRHYDVCKTQDGNVLVLPRVKDTRRVLYKVVEYTPLLDSSNMCQVHWI 162
+ D + NP+ H+ + G + R Y + + ++D +
Sbjct: 1661 ILDIVINNPVNLTIHFG---GEKGKRI---------RENYSAMIFETIVDGKLKTE---- 1704
Query: 163 KIANDIKEYYESYDGFVILHG-TDTLSYTASALSFMLENLGKPVIVTGSQISIFQ-IRSD 220
KI +I E+ SY LS T +P + + F+ ++S
Sbjct: 1705 KIFKEINEHSTSY----TFRSEKGLLSATQFT---------QPALTLME-KAAFEDLKSK 1750
Query: 221 GVHNFIGALILAGNYDIPEVTVYFNHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKVG--L 278
G+ AG H S+ E+ A LA + +
Sbjct: 1751 GL--IPADATFAG------------H-----------SLGEYAA--------LASLADVM 1777
Query: 279 TIDVNMKSIF-RSSTIKKFDVQSQLNL-NVGILRIYPHISNHTVRSFMQSPMEGVILLTY 336
+I+ ++ +F R T++ + +L N G++ I P SF Q ++ V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP---GRVAASFSQEALQYV----- 1829
Query: 337 GSGNFPSNRSDLIDELRLASDRNVIIVN--CS--Q--CSRGGTSDTYEAGKILSGIGVIN 390
++ + + V IVN Q + G +L+ I +
Sbjct: 1830 ------------VERVGKRTGWLVEIVNYNVENQQYVAA-GDLRALDTVTNVLNFIK-LQ 1875
Query: 391 GYDMTPEAALTKLSYVLSKSELTLQQKKDIMM 422
D+ L KS L+L++ + +
Sbjct: 1876 KIDIIE----------LQKS-LSLEEVEGHLF 1896
Score = 42.3 bits (99), Expect = 5e-04
Identities = 81/541 (14%), Positives = 156/541 (28%), Gaps = 185/541 (34%)
Query: 178 FVILHGTDTLSYTASALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALI-----LA 232
+ HG+ L + ++ P T S Q++ F L A
Sbjct: 9 LTLSHGS--LEH-----VLLV-----P---TASFFIASQLQEQ----FNKILPEPTEGFA 49
Query: 233 GNYD---IPEVTVYF----NHKLIRGNRT-----VKMSVKEFDAFDSPNFPNLAKVGLTI 280
+ + E+ F + + + + + EF+ + L
Sbjct: 50 ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN----CY--LE----GN 99
Query: 281 DVNMKSIFRSSTIKKFDVQSQLNL--NVGILRIY---PHISNHTVRSFMQSPMEGVILLT 335
D++ + K ++ L +++ Y ++ S L
Sbjct: 100 DIH-------ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-----LFR 147
Query: 336 ---------Y----GSGNFPSNRSDLIDELR--------LASDRNVIIVNCSQCSRGGTS 374
G GN D +ELR L D +I ++
Sbjct: 148 AVGEGNAQLVAIFGGQGN----TDDYFEELRDLYQTYHVLVGD---LIKFSAETLSELIR 200
Query: 375 DTYEAGKILS-GIGV---INGYDMTPEA---ALTKLSYVLSKSELTLQQ---------KK 418
T +A K+ + G+ + + TP+ +S L + + Q
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL----IGVIQLAHYVVTAKLL 256
Query: 419 DIMMTNIRGELSTDAIHNNELDLAAAVAKTLHLSGRQELNKLKKILYPALFQSAVREGDI 478
+R L H+ L A A+A+T S ++K + LF VR
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAET--DSWESFFVSVRKAI-TVLFFIGVR---- 309
Query: 479 DKIKEMQNYGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISP-LHE 537
+ ++ I++ LEN V SP L
Sbjct: 310 -------------CYEAYPNTSL--------PPSILEDSLENNEGVP-------SPML-- 339
Query: 538 AVI-ADQHDIIRLLRHCGAHL-TNEPMFLGDVLTNAAARGMI--------KRLQSYLL-- 585
++ Q + + +HL + + + L N A+ ++ L L
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVN-GAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 586 -AGINLNQ-----------VDSIGL---TPLHAAVLNNNIESV-RYLLSQHV-----DLT 624
A L+Q + L +P H+ +L + + + L+ +V D+
Sbjct: 397 KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 625 I 625
I
Sbjct: 457 I 457
Score = 40.0 bits (93), Expect = 0.003
Identities = 73/387 (18%), Positives = 115/387 (29%), Gaps = 169/387 (43%)
Query: 183 GTDTLSYTAS---------ALSFMLENLGKPVIVTGSQISIFQIRSDGVHNFIGALILAG 233
G D Y S A + + G SI I V N
Sbjct: 1632 GMDL--YKTSKAAQDVWNRADNHFKDTYG---------FSILDI----VIN--------- 1667
Query: 234 NYDIP-EVTVYF---NHKLIRGNRTVKMSVKEFDAFDSPNFPNLAKVGLTIDVNMKS-IF 288
N P +T++F K IR N + M F+ K+ I+ + S F
Sbjct: 1668 N---PVNLTIHFGGEKGKRIRENYS-AMI---FETIVDGKLKTE-KIFKEINEHSTSYTF 1719
Query: 289 RSSTIKKFDVQSQLNLNVGILRIYPHISNHTVRSFMQSPMEGVILLT-YGSGNFPSNRSD 347
RS + L+ T F Q P + L
Sbjct: 1720 RSE-------KGLLSA--------------T--QFTQ-P---ALTLMEKA---------- 1742
Query: 348 LIDELRLASDRNVIIVNCSQCSRGGT-SDTYEAGKILSGIGVINGYDMTPE-AALTKLSY 405
++L+ S+G +D AG S +G E AAL L+
Sbjct: 1743 AFEDLK---------------SKGLIPADATFAG--HS-LG---------EYAALASLAD 1775
Query: 406 VLSKSELTLQQKKDIMMTNIRGELSTDAIHNNEL-----DLAAAVAKTLHLSGRQELNKL 460
V+S L + + RG A+ +EL + A + S QE L
Sbjct: 1776 VMSIESL-------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE--AL 1826
Query: 461 KKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNI-------------LHTACS 507
+ ++ + R G + E+ NY N+ L T +
Sbjct: 1827 QYVVE----RVGKRTG---WLVEIVNY------------NVENQQYVAAGDLRALDTVTN 1867
Query: 508 V------GKLDIVKYCLENGVSVHIRD 528
V K+DI++ L+ S+ + +
Sbjct: 1868 VLNFIKLQKIDIIE--LQ--KSLSLEE 1890
Score = 30.4 bits (68), Expect = 2.8
Identities = 31/135 (22%), Positives = 43/135 (31%), Gaps = 45/135 (33%)
Query: 525 HIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYL 584
H +D Y S L DI+ N P+ L + +G KR++
Sbjct: 1652 HFKDTYGFSIL---------DIVI----------NNPVNL--TIHFGGEKG--KRIRENY 1688
Query: 585 LAGINLNQVDSIGLTPLHAAVLNNNIESVRY-----LLSQHVDLTIENKNGQSAI---EV 636
A I VD T +N + S + LL T + Q A+ E
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL----SAT---QFTQPALTLMEK 1741
Query: 637 ANQMQLNDIIELLKS 651
A E LKS
Sbjct: 1742 A-------AFEDLKS 1749
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 60.6 bits (146), Expect = 6e-10
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 568 LTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIEN 627
L A A + + L G N+NQ DS G PLH A + + L + DL +
Sbjct: 239 LIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 628 KNGQSAIEVANQMQLNDIIELLKSSETKSK 657
G+ + +A + DI+ LL+ ++ +
Sbjct: 299 SEGRDPLTIAMETANADIVTLLRLAKMREA 328
Score = 51.7 bits (123), Expect = 4e-07
Identities = 37/174 (21%), Positives = 58/174 (33%), Gaps = 36/174 (20%)
Query: 468 LFQSAVREGDIDKIKEMQNYGADISMT--DFDRRNILHTACSVGKLDIVKYCLENGVSVH 525
LF+++ + + + +GAD++ D L A + L ++ L+NG +V+
Sbjct: 203 LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN 262
Query: 526 IRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLL 585
D+ PLH A I + L GA
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGA------------------------------ 292
Query: 586 AGINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQ 639
+L DS G PL A+ N + V LL E GQ+ E
Sbjct: 293 ---DLGARDSEGRDPLTIAMETANADIVT-LLRLAKMREAEAAQGQAGDETYLD 342
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 54.1 bits (130), Expect = 1e-07
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 587 GINLNQVDSIGLTPLHAAVLNNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQLNDII 646
G +L+ + G T LH A L N + ++ LL + N+ G++A+++A + +
Sbjct: 197 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE 256
Query: 647 ELLKSSETKSKVH 659
ELL+ ++ +
Sbjct: 257 ELLEQAQAGTFAF 269
Score = 47.2 bits (112), Expect = 1e-05
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 11/101 (10%)
Query: 471 SAVREGDIDKIKEMQNYGADISMT------DFDRRNILHTACSV---GKLDIVKYCLENG 521
+A+ D+ + E G D +LH A V L +V + ++NG
Sbjct: 138 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 197
Query: 522 VSVHIRDNYDISPLHEAVIADQHDIIRLLRHCGA--HLTNE 560
+ + + LH A + +Q D ++LL A NE
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE 238
Score = 43.3 bits (102), Expect = 2e-04
Identities = 13/67 (19%), Positives = 20/67 (29%)
Query: 487 YGADISMTDFDRRNILHTACSVGKLDIVKYCLENGVSVHIRDNYDISPLHEAVIADQHDI 546
G + D LH A + D +K L+ V + + L A +
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 547 IRLLRHC 553
LL
Sbjct: 256 EELLEQA 262
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.009
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 12/29 (41%)
Query: 454 RQELNKLK---KILY-----PALFQSAVR 474
+Q L KL+ K LY PAL A++
Sbjct: 19 KQALKKLQASLK-LYADDSAPAL---AIK 43
Score = 36.5 bits (83), Expect = 0.010
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 577 IKRLQSYLLAGINLNQVDSIGLTPLHAAVLNNNIE 611
+K+LQ+ L L DS P A + +E
Sbjct: 22 LKKLQASL----KLYADDS---AP--ALAIKATME 47
Score = 32.2 bits (72), Expect = 0.25
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 16/31 (51%)
Query: 72 RLESKVLVLYTGGTIGMEDNEQGALAPSSKP 102
+L++ L LY A S P
Sbjct: 24 KLQAS-LKLY---------------ADDSAP 38
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 32.6 bits (74), Expect = 0.44
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 547 IRLLRHCGAHLTNEPMFLGDVLTNAAARGMIKRLQSYLLAGINLNQVDSIGLTPLHAAVL 606
RL + CG H+ L +++ RG + L + L A + L + T L A+L
Sbjct: 215 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL--AIL 272
Query: 607 NNNIESVRYLLSQHVDLTIENKNGQSAIEVANQMQL 642
+ + + + +H++L N + A Q L
Sbjct: 273 YSKFKPQK--MREHLELFWSRVNIPKVLRAAEQAHL 306
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 32.0 bits (72), Expect = 0.69
Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 454 RQELNKLKKILYPALFQSAVREGDIDKIKEMQNYGADISMTDFDRRNILHTACSVGK 510
R+E + P ++S + ++ +KE + +++ S+G+
Sbjct: 473 RREGGDQRHSFGPLDYESL--QQELA-LKETVWKKVSPESNEDISTTVVYRMESLGE 526
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 29.1 bits (66), Expect = 5.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 9/41 (21%)
Query: 348 LIDELRLASDRNVIIVNCSQCSRGGTSDT---YEA---GKI 382
+I+E R+ +VN RG D EA GK+
Sbjct: 217 IINEERVKKLEGKYLVN---IGRGALVDEKAVTEAIKQGKL 254
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase;
cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A
{Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A*
3qhm_A* 3qhn_A*
Length = 458
Score = 28.7 bits (63), Expect = 6.6
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 4/58 (6%)
Query: 512 DIVKYCLENGVSV----HIRDNYDISPLHEAVIADQHDIIRLLRHCGAHLTNEPMFLG 565
I+K + G+ V H I PL + D I +G
Sbjct: 138 KIIKKAGDLGIFVLLDYHRIGCTHIEPLWYTEDFSEEDFINTWIEVAKRFGKYWNVIG 195
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 27.6 bits (62), Expect = 6.7
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 623 LTIENKNGQSAIEVANQMQLNDIIEL----LKSSE 653
L + N + + A +Q+ +++ +K+SE
Sbjct: 93 LNLREGNIMAVMATAMYLQMEHVVDTCRKFIKASE 127
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 28.5 bits (63), Expect = 7.0
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 13/97 (13%)
Query: 174 SYDGFVILHGTDTLSYTA----SALSFMLENLGKPVIV-----TGSQISIFQIRSDGVHN 224
G G ++ A + +L + + TG+Q+ + + +
Sbjct: 78 GKIGS----GPQDHAHDAEDVDDLIGILLRDHCMNEVALFATSTGTQLVFELLENSAHKS 133
Query: 225 FIGALILAGNYDIPEVTVYFNHKLIRGNRTVKMSVKE 261
I +IL G PE ++ V+ + E
Sbjct: 134 SITRVILHGVVCDPENPLFTPEGCAARKEHVEKLMAE 170
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt,
isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana}
PDB: 3igy_B* 3nvl_A
Length = 561
Score = 28.3 bits (64), Expect = 8.9
Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 28/113 (24%)
Query: 225 FIGALILAGNYDIPEVT-------VYFNHKLIRGNRTVKMS----VKEFDAFDSPNFPNL 273
+ I+ D P T + N RG+R ++M+ ++F+ FD P +
Sbjct: 253 YYPPFIVVDEQDKPLGTIEDGDAVLCVN---FRGDRVIEMTRAFEDEDFNKFDRVRVPKV 309
Query: 274 AKVGLT-----IDVNMKSIFRSSTIKKF--DVQSQLNLNVGILRI-----YPH 314
G+ + + + + + + LN I + H
Sbjct: 310 RYAGMMRYDGDLGIPNNFLVPPPKLTRVSEEYLCGSGLN--IFACSETQKFGH 360
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.382
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,946,309
Number of extensions: 624274
Number of successful extensions: 2412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1815
Number of HSP's successfully gapped: 317
Length of query: 659
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 559
Effective length of database: 3,909,693
Effective search space: 2185518387
Effective search space used: 2185518387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)