BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9760
(133 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UT5|E Chain E, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|E Chain E, Tubulin-vinblastine: Stathmin-like Complex
Length = 142
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 15 KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
K+ G ++VIL P+ P A+ P + E I++KL+ AEERR EAE +
Sbjct: 10 KATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 66
Query: 71 AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
A +R + +K E+ N FI+ KE L +++E + E REA + +E+L++
Sbjct: 67 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 122
>pdb|3RYC|E Chain E, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|E Chain E, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|E Chain E, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|E Chain E, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
Length = 143
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 15 KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
K+ G ++VIL P+ P A+ P + E I++KL+ AEERR EAE +
Sbjct: 11 KATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 67
Query: 71 AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
A +R + +K E+ N FI+ KE L +++E + E REA + +E+L++
Sbjct: 68 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 123
>pdb|1SA0|E Chain E, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1Z2B|E Chain E, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|3DU7|E Chain E, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|E Chain E, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|E Chain E, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|E Chain E, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|E Chain E, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|E Chain E, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|E Chain E, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|E Chain E, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|1SA1|E Chain E, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
Length = 142
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 15 KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
K G ++VIL P+ P A+ P + E I++KL+ AEERR EAE +
Sbjct: 10 KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 66
Query: 71 AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
A +R + +K E+ N FI+ KE L +++E + E REA + +E+L++
Sbjct: 67 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 122
>pdb|4I4T|E Chain E, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|E Chain E, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 143
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 15 KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
K G ++VIL P+ P A+ P + E I++KL+ AEERR EAE +
Sbjct: 11 KCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 67
Query: 71 AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
A +R + +K E+ N FI+ KE L +++E + E REA + +E+L++
Sbjct: 68 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 123
>pdb|4F61|I Chain I, Tubulin:stathmin-Like Domain Complex
Length = 240
Score = 39.3 bits (90), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 7/116 (6%)
Query: 15 KSKGGIKYDVILAEPAGTPPPLKTAA----DTPVILRSESIEEKLKQAEERRLSLEAEKI 70
K+ G ++VIL P+ P A+ P + E I++KL+ AEERR EAE +
Sbjct: 10 KATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSL---EEIQKKLEAAEERRKYQEAELL 66
Query: 71 AKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
A +R + ++ E+ N +I+ KE L +++E + E REA +E+L++
Sbjct: 67 KHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQE 122
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 46/86 (53%)
Query: 41 DTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKE 100
+ + + E + +K++ +E R EAE + A +R + ++ E+ N +I+ KE
Sbjct: 139 NNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKE 198
Query: 101 TLEKRLEISSEKREALINDKMEKLKD 126
L +++E + E REA +E+L++
Sbjct: 199 KLAQKMESNKENREAHFAAMLERLQE 224
>pdb|3G6S|A Chain A, Crystal Structure Of The
EndonucleaseEXONUCLEASEPHOSPHATASE (BVU_0621) FROM
Bacteroides Vulgatus. Northeast Structural Genomics
Consortium Target Bvr56d
Length = 267
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 93 EFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
+FI T + L K EI +E EAL++D +L D
Sbjct: 224 DFIFVTPQVLVKSCEIPAEVPEALLSDHNPQLAD 257
>pdb|2JEX|A Chain A, Transcription Activator Structure Reveals Redox Control Of
A Replication Initiation Reaction
Length = 209
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 100 ETLEKRLEISSEKREALINDKMEKLKDHVSVTT 132
ET +RL ++ E + LI +KL+DH+ T
Sbjct: 2 ETACERLHVAQETQMQLIEKSSDKLQDHILYWT 34
>pdb|2JEU|A Chain A, Transcription Activator Structure Reveals Redox Control Of
A Replication Initiation Reaction
Length = 209
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 100 ETLEKRLEISSEKREALINDKMEKLKDHVSVTT 132
ET +RL ++ E + LI +KL+DH+ T
Sbjct: 2 ETACERLHVAQETQMQLIEKSSDKLQDHILYWT 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.127 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,365,983
Number of Sequences: 62578
Number of extensions: 116270
Number of successful extensions: 692
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 128
length of query: 133
length of database: 14,973,337
effective HSP length: 88
effective length of query: 45
effective length of database: 9,466,473
effective search space: 425991285
effective search space used: 425991285
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 46 (22.3 bits)