Query psy9760
Match_columns 133
No_of_seqs 86 out of 88
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 18:52:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00836 Stathmin: Stathmin fa 100.0 6.5E-52 1.4E-56 316.3 8.0 126 6-131 1-127 (140)
2 KOG4403|consensus 73.1 10 0.00022 35.0 6.0 32 46-77 259-302 (575)
3 PF02731 SKIP_SNW: SKIP/SNW do 70.1 53 0.0011 26.0 9.2 53 75-127 105-157 (158)
4 PRK10328 DNA binding protein, 66.6 27 0.0006 26.6 6.4 43 47-89 25-67 (134)
5 PF10147 CR6_interact: Growth 63.6 84 0.0018 26.0 10.2 22 103-124 148-169 (217)
6 PRK10947 global DNA-binding tr 62.9 36 0.00077 26.0 6.4 40 47-86 25-64 (135)
7 KOG4722|consensus 56.9 1.2E+02 0.0026 28.3 9.6 75 50-128 248-322 (672)
8 CHL00019 atpF ATP synthase CF0 56.7 90 0.0019 24.1 11.8 46 82-127 98-143 (184)
9 PF04880 NUDE_C: NUDE protein, 54.7 18 0.00039 28.7 3.6 23 47-69 1-23 (166)
10 PHA02277 hypothetical protein 52.8 24 0.00051 27.6 3.9 31 97-127 94-124 (150)
11 KOG4691|consensus 51.2 53 0.0011 27.4 5.9 23 88-112 168-190 (227)
12 PF07412 Geminin: Geminin; In 50.7 90 0.002 25.6 7.2 12 115-126 159-170 (200)
13 PRK10361 DNA recombination pro 49.2 2.2E+02 0.0047 26.2 11.8 42 89-130 110-151 (475)
14 PF00430 ATP-synt_B: ATP synth 49.0 91 0.002 21.9 11.2 83 47-129 38-120 (132)
15 PRK07353 F0F1 ATP synthase sub 48.0 1E+02 0.0023 22.3 11.7 81 47-127 44-124 (140)
16 CHL00118 atpG ATP synthase CF0 45.6 1.3E+02 0.0028 22.6 11.7 15 49-63 56-70 (156)
17 PRK06231 F0F1 ATP synthase sub 44.2 1.6E+02 0.0035 23.4 11.6 15 49-63 82-96 (205)
18 PF05835 Synaphin: Synaphin pr 43.0 76 0.0016 24.5 5.4 36 47-82 35-70 (139)
19 KOG4364|consensus 42.0 3.5E+02 0.0075 26.6 11.9 11 46-56 243-253 (811)
20 PRK13460 F0F1 ATP synthase sub 40.7 1.6E+02 0.0035 22.4 12.0 14 49-62 50-63 (173)
21 smart00502 BBC B-Box C-termina 39.2 1.2E+02 0.0026 20.5 11.5 63 69-131 29-91 (127)
22 PF14943 MRP-S26: Mitochondria 38.7 1.5E+02 0.0034 23.3 6.6 16 105-120 117-132 (170)
23 PF06637 PV-1: PV-1 protein (P 38.4 32 0.00069 31.2 3.0 16 41-56 410-426 (442)
24 PRK14474 F0F1 ATP synthase sub 37.0 2.4E+02 0.0051 23.2 11.8 13 50-62 40-52 (250)
25 PF08452 DNAP_B_exo_N: DNA pol 35.5 15 0.00033 20.3 0.4 7 8-14 1-7 (22)
26 PF04568 IATP: Mitochondrial A 35.0 1.8E+02 0.0039 21.2 6.7 39 52-90 54-94 (100)
27 TIGR03321 alt_F1F0_F0_B altern 34.7 2.5E+02 0.0053 22.7 11.6 15 49-63 39-53 (246)
28 TIGR01069 mutS2 MutS2 family p 33.0 4.5E+02 0.0098 25.3 11.5 34 78-111 557-590 (771)
29 PRK13453 F0F1 ATP synthase sub 32.1 2.3E+02 0.005 21.6 11.1 15 49-63 52-66 (173)
30 PRK13454 F0F1 ATP synthase sub 30.8 2.5E+02 0.0055 21.7 11.8 23 47-69 70-92 (181)
31 PRK14472 F0F1 ATP synthase sub 30.6 2.4E+02 0.0053 21.4 11.6 15 49-63 52-66 (175)
32 PHA03380 transactivating tegum 30.1 42 0.00092 30.5 2.4 37 6-42 352-388 (432)
33 TIGR01144 ATP_synt_b ATP synth 30.0 2.2E+02 0.0048 20.7 11.7 14 49-62 29-42 (147)
34 PRK09174 F0F1 ATP synthase sub 30.0 2.9E+02 0.0063 22.1 11.6 15 49-63 87-101 (204)
35 PRK13455 F0F1 ATP synthase sub 29.8 2.6E+02 0.0056 21.5 11.7 16 49-64 61-76 (184)
36 KOG2412|consensus 29.5 4.6E+02 0.0099 25.0 9.0 6 96-101 254-259 (591)
37 PF09731 Mitofilin: Mitochondr 29.1 4.3E+02 0.0092 23.8 11.9 24 103-126 366-389 (582)
38 PRK07352 F0F1 ATP synthase sub 29.1 2.6E+02 0.0056 21.2 11.8 16 49-64 53-68 (174)
39 PF04949 Transcrip_act: Transc 29.0 3E+02 0.0065 22.0 9.9 66 49-114 52-119 (159)
40 PRK13453 F0F1 ATP synthase sub 28.5 2.7E+02 0.0059 21.3 11.7 25 47-71 57-81 (173)
41 PF15350 ETAA1: Ewing's tumour 28.4 51 0.0011 32.1 2.8 21 44-64 792-812 (814)
42 PRK14473 F0F1 ATP synthase sub 27.9 2.6E+02 0.0057 20.9 11.6 15 49-63 42-56 (164)
43 PF15456 Uds1: Up-regulated Du 27.9 1.2E+02 0.0026 22.7 4.2 30 46-75 88-117 (124)
44 PF12690 BsuPI: Intracellular 27.7 41 0.00089 23.2 1.6 15 17-31 21-35 (82)
45 PRK05759 F0F1 ATP synthase sub 25.9 2.7E+02 0.0058 20.4 11.6 15 49-63 38-52 (156)
46 PRK09174 F0F1 ATP synthase sub 25.6 3.5E+02 0.0076 21.6 11.9 27 47-73 92-118 (204)
47 PF14223 UBN2: gag-polypeptide 25.1 94 0.002 21.6 3.1 23 44-66 95-117 (119)
48 COG1570 XseA Exonuclease VII, 24.5 4.3E+02 0.0094 24.2 7.8 32 47-78 269-300 (440)
49 KOG2412|consensus 24.1 2.5E+02 0.0055 26.6 6.3 12 61-72 207-218 (591)
50 PTZ00026 60S ribosomal protein 23.1 46 0.001 27.5 1.3 14 20-33 128-141 (204)
51 PRK04243 50S ribosomal protein 23.0 46 0.001 27.3 1.3 13 21-33 129-141 (196)
52 PRK05759 F0F1 ATP synthase sub 22.9 3.1E+02 0.0067 20.1 11.3 61 47-107 43-103 (156)
53 PRK06231 F0F1 ATP synthase sub 22.7 4E+02 0.0086 21.2 11.2 80 47-126 87-166 (205)
54 PF00827 Ribosomal_L15e: Ribos 22.7 47 0.001 27.2 1.2 11 21-31 128-138 (192)
55 PF12037 DUF3523: Domain of un 22.3 5E+02 0.011 22.3 11.3 31 98-128 179-209 (276)
56 PRK13455 F0F1 ATP synthase sub 22.0 3.7E+02 0.008 20.6 11.1 42 47-88 66-107 (184)
57 PRK07352 F0F1 ATP synthase sub 21.8 3.6E+02 0.0079 20.4 11.2 64 47-110 58-121 (174)
58 PRK14473 F0F1 ATP synthase sub 21.6 3.5E+02 0.0076 20.2 11.2 63 47-109 47-109 (164)
59 KOG2891|consensus 21.3 6E+02 0.013 22.7 8.8 65 48-129 380-444 (445)
60 CHL00118 atpG ATP synthase CF0 20.2 3.8E+02 0.0082 20.0 12.0 81 47-127 61-141 (156)
61 PF14916 CCDC92: Coiled-coil d 20.2 52 0.0011 22.1 0.9 25 8-32 28-52 (60)
62 KOG0155|consensus 20.0 5.6E+02 0.012 24.4 7.7 53 59-121 439-491 (617)
No 1
>PF00836 Stathmin: Stathmin family; InterPro: IPR000956 Stathmin is a ubiquitous phosphorylated protein thought to act as an intracellular relay for diverse regulatory pathways [], functioning through a variety of secondary messengers. Its phosphorylation and gene expression are regulated throughout development [] and in response to extracellular signals regulating cell proliferation, differentiation and function []. Stathmin, and the related proteins SCG10 and XB3, contain a N-terminal domain (XB3 contains an additional N-terminal hydrophobic region), a 78 amino acid coiled-coil region, and a short C-terminal domain.; GO: 0035556 intracellular signal transduction; PDB: 3RYC_E 3RYH_E 3N2K_E 1Z2B_E 1SA1_E 3HKD_E 3DU7_E 3HKC_E 3HKB_E 3HKE_E ....
Probab=100.00 E-value=6.5e-52 Score=316.27 Aligned_cols=126 Identities=30% Similarity=0.409 Sum_probs=105.9
Q ss_pred CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Q psy9760 6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAA 84 (133)
Q Consensus 6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~ 84 (133)
+||+|+||+||+||+||||||+||+++++||..++|| ++|+|++|||+||+||||||+|+|+++|++|+++|+|+++|+
T Consensus 1 ~d~~vk~~~kr~sG~aFEVIL~pps~~~~p~~~~s~pk~k~~SleeIqkKLeAAEERRKs~Ea~~l~~laekreh~~ev~ 80 (140)
T PF00836_consen 1 EDMEVKELNKRASGQAFEVILKPPSPDSPPPRPLSPPKKKDPSLEEIQKKLEAAEERRKSQEAQVLKKLAEKREHEREVL 80 (140)
T ss_dssp ---EEEEEEEETTEEEEEEEES--SSSSS--SS--SS------HSCTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred CcchhhhhcccCCCcceEeeeCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999976444333333 389999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhcc
Q psy9760 85 KKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVT 131 (133)
Q Consensus 85 qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~~ 131 (133)
+|++|+||||+++|+|+|.+||++++|||+|||+++++||++|...|
T Consensus 81 ~Ka~E~n~~f~k~aeEkl~~KmE~~~EnRea~l~a~~erLkek~~h~ 127 (140)
T PF00836_consen 81 QKALEENNNFSKMAEEKLNQKMEQYKENREAHLAALKERLKEKEKHA 127 (140)
T ss_dssp HHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999976544
No 2
>KOG4403|consensus
Probab=73.09 E-value=10 Score=34.98 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHH-HH-----------HhhhHHHHHHHHHHHHH
Q psy9760 46 LRSESIEEKLKQA-EE-----------RRLSLEAEKIAKNAARR 77 (133)
Q Consensus 46 ~SleEIqkKLeAA-EE-----------RRks~Ea~~lk~laekr 77 (133)
.||+++|+.|+.| +| +|+..||.-|..+.+--
T Consensus 259 qsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~ 302 (575)
T KOG4403|consen 259 QSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGV 302 (575)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcch
Confidence 3899999999988 55 78899999988885533
No 3
>PF02731 SKIP_SNW: SKIP/SNW domain; InterPro: IPR004015 SKIP (SKI-interacting protein) is an essential spliceosomal component and transcriptional coregulator, which may provide regulatory coupling of transcription initiation and splicing []. SKIP was identified in a yeast 2-hybrid screen, where it was shown to interact with both the cellular and viral forms of SKI through the highly conserved region on SKIP known as the SNW domain []. SKIP is now known to interact with a number of other proteins as well. SKIP potentiates the activity of important transcription factors, such as vitamin D receptor, CBF1 (RBP-Jkappa), Smad2/3, and MyoD. It works with Ski in overcoming pRb-mediated cell cycle arrest, and it is targeted by the viral transactivators EBNA2 and E7 []. This entry represents the SNW domain.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=70.11 E-value=53 Score=26.02 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=25.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760 75 ARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH 127 (133)
Q Consensus 75 ekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~ 127 (133)
++=.+-.++|..|.-.-..=+++=.+-..+.++.-++.+|..|..|-.+.+++
T Consensus 105 d~Fa~LseAL~~Ad~~aReev~~R~~~~~~~a~ke~~~kEe~lr~lA~~aR~e 157 (158)
T PF02731_consen 105 DKFAKLSEALYIADRKAREEVRQRAEMQKELAEKEKEEKEEKLRELAQRAREE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344444444333332333333333334555566677777666666553
No 4
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=66.61 E-value=27 Score=26.61 Aligned_cols=43 Identities=21% Similarity=0.183 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDE 89 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E 89 (133)
.|+++..||.+.-+-|+..+.+..++.+++.+.+.++.+...+
T Consensus 25 ~Lee~~ekl~~vv~er~~~~~~~~~~~~er~~~l~~i~~~~~~ 67 (134)
T PRK10328 25 VLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELMKA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999884444444455556667666666665554443
No 5
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=63.63 E-value=84 Score=25.99 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=13.2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHH
Q psy9760 103 EKRLEISSEKREALINDKMEKL 124 (133)
Q Consensus 103 ~~Kme~~kEnReA~l~al~ekL 124 (133)
..+....++.++..++.++++|
T Consensus 148 ~~~~~~~k~rkerl~eEvre~f 169 (217)
T PF10147_consen 148 EAKAQAAKERKERLIEEVREHF 169 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666654
No 6
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=62.87 E-value=36 Score=26.03 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKK 86 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qK 86 (133)
.|+++..||...-+-|+..+++..+..+++.+.+.++.+.
T Consensus 25 ~Lee~~ekl~~vv~er~ee~~~~~~~~~er~~kl~~~r~~ 64 (135)
T PRK10947 25 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREM 64 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888999885555555555666666666655554443
No 7
>KOG4722|consensus
Probab=56.93 E-value=1.2e+02 Score=28.34 Aligned_cols=75 Identities=29% Similarity=0.271 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhh
Q psy9760 50 SIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHV 128 (133)
Q Consensus 50 EIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~ 128 (133)
-.+.|-.-|++-|..+.....-+|.+-.+++++|..+.-+....-..+.+++ |--..-||+-+|-++..|-++.-
T Consensus 248 kHEeKQ~~AeeLRekLqE~KalKLkeLleReedVRk~kE~L~dqkRqllE~k----llhAe~kRd~ni~aiikkAkddd 322 (672)
T KOG4722|consen 248 KHEEKQKHAEELREKLQEAKALKLKELLEREEDVRKKKEALKDQKRQLLEAK----LLHAEDKRDKNIMAIIKKAKDDD 322 (672)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhcchhhHHHHHHHhhhhh
Confidence 3556666677666554444555677778888999888887776666666554 45677889999988888877643
No 8
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=56.68 E-value=90 Score=24.07 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760 82 DAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH 127 (133)
Q Consensus 82 Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~ 127 (133)
++...+...-..-...|+.....-.+..+..=+.........|+..
T Consensus 98 ~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~e 143 (184)
T CHL00019 98 NGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQ 143 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444555555444444444444444444444443
No 9
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.65 E-value=18 Score=28.68 Aligned_cols=23 Identities=48% Similarity=0.472 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEK 69 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~ 69 (133)
||+|++.||-.|-||---+|.++
T Consensus 1 SLeD~EsklN~AIERnalLE~EL 23 (166)
T PF04880_consen 1 SLEDFESKLNQAIERNALLESEL 23 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhHHHHHHH
Confidence 79999999999999999999988
No 10
>PHA02277 hypothetical protein
Probab=52.82 E-value=24 Score=27.59 Aligned_cols=31 Identities=35% Similarity=0.497 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760 97 QTKETLEKRLEISSEKREALINDKMEKLKDH 127 (133)
Q Consensus 97 ~aeEkl~~Kme~~kEnReA~l~al~ekLke~ 127 (133)
.+++++..-....-++|+|||....|+|++.
T Consensus 94 i~eek~~KA~~kln~k~eay~ke~qe~~~~~ 124 (150)
T PHA02277 94 VTQEKVGKAKDKLNEKREAYLKEKQEELRQK 124 (150)
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3578888888888999999999999999884
No 11
>KOG4691|consensus
Probab=51.24 E-value=53 Score=27.37 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHH
Q psy9760 88 DEKENEFIEQTKETLEKRLEISSEK 112 (133)
Q Consensus 88 ~E~~~~F~k~aeEkl~~Kme~~kEn 112 (133)
++...||| |.+.|+.+++..=+|
T Consensus 168 iersknfI--TReNLea~Ie~AL~~ 190 (227)
T KOG4691|consen 168 IERSKNFI--TRENLEARIEAALDS 190 (227)
T ss_pred HHHHhhhh--hHHhHHHHHHHHHcC
Confidence 44445554 345555544444333
No 12
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=50.74 E-value=90 Score=25.61 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhh
Q psy9760 115 ALINDKMEKLKD 126 (133)
Q Consensus 115 A~l~al~ekLke 126 (133)
-||++++++|-.
T Consensus 159 ~~la~~ie~l~~ 170 (200)
T PF07412_consen 159 QYLAEVIERLTG 170 (200)
T ss_dssp HHHHHHHHHCC-
T ss_pred HHHHHHHHHHhc
Confidence 478888888764
No 13
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=49.16 E-value=2.2e+02 Score=26.23 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhc
Q psy9760 89 EKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSV 130 (133)
Q Consensus 89 E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~ 130 (133)
.....|-.+|-+-|..+=....+.....|..|..=|++.+..
T Consensus 110 ~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~ 151 (475)
T PRK10361 110 RLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDG 151 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 347889999999999999998888888888887777776654
No 14
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=49.01 E-value=91 Score=21.89 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke 126 (133)
++++.+.....|+......+..+-..-.+-.+-..++...+......=...+++.+...++.....=+.....+...|+.
T Consensus 38 ~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~ 117 (132)
T PF00430_consen 38 ELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQ 117 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566655555554433332233223333333444444444455566666666665555555555555555555
Q ss_pred hhh
Q psy9760 127 HVS 129 (133)
Q Consensus 127 ~~~ 129 (133)
++.
T Consensus 118 ~~~ 120 (132)
T PF00430_consen 118 EIV 120 (132)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 15
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=48.02 E-value=1e+02 Score=22.25 Aligned_cols=81 Identities=15% Similarity=0.211 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke 126 (133)
++++.+.....|++.....+.++-..-.+-.+-..++...+...-++-...+.+.+...++.....=+..-...+..|+.
T Consensus 44 ~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~ 123 (140)
T PRK07353 44 NRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQ 123 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333333444444444555555555555555555544444444444444444
Q ss_pred h
Q psy9760 127 H 127 (133)
Q Consensus 127 ~ 127 (133)
.
T Consensus 124 ~ 124 (140)
T PRK07353 124 Q 124 (140)
T ss_pred H
Confidence 3
No 16
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=45.59 E-value=1.3e+02 Score=22.62 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|...|+.|++.+.
T Consensus 56 ~~I~~~l~~Ae~~~~ 70 (156)
T CHL00118 56 EYIRKNLTKASEILA 70 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665554
No 17
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=44.24 E-value=1.6e+02 Score=23.41 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|+..|..|++.+.
T Consensus 82 ~~I~~~L~~Ae~~~~ 96 (205)
T PRK06231 82 ELIEAEINQANELKQ 96 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677777766554
No 18
>PF05835 Synaphin: Synaphin protein; InterPro: IPR008849 This family consists of several eukaryotic synaphin 1 and 2 proteins. Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. Synaphin promotes SNAREs to form precomplexes that oligomerise into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting and prevents SNARE complexes from oligomerising. It is thought that oligomerisation of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles []. Synaphin promotes neuronal exocytosis by promoting interaction between the complementary syntaxin and synaptobrevin transmembrane regions that reside in opposing membranes prior to fusion [].; GO: 0019905 syntaxin binding, 0006836 neurotransmitter transport; PDB: 3RL0_m 3RK3_E 1L4A_E 1KIL_E.
Probab=42.97 E-value=76 Score=24.51 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIED 82 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~E 82 (133)
.-+|+|+.|..+++||+..=++.=+.=+.-|.||++
T Consensus 35 e~~E~qeal~eeee~Rk~k~~k~eaERe~mRq~IRd 70 (139)
T PF05835_consen 35 EEEEYQEALREEEEERKAKHAKMEAEREKMRQHIRD 70 (139)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568999999999999986665554444444555543
No 19
>KOG4364|consensus
Probab=42.00 E-value=3.5e+02 Score=26.57 Aligned_cols=11 Identities=9% Similarity=0.172 Sum_probs=6.8
Q ss_pred CCHHHHHHHHH
Q psy9760 46 LRSESIEEKLK 56 (133)
Q Consensus 46 ~SleEIqkKLe 56 (133)
.+...|-+++.
T Consensus 243 ~p~~l~~KQ~r 253 (811)
T KOG4364|consen 243 RPEKLLLKQLR 253 (811)
T ss_pred cchhHHHHHHH
Confidence 36666666665
No 20
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=40.75 E-value=1.6e+02 Score=22.40 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHh
Q psy9760 49 ESIEEKLKQAEERR 62 (133)
Q Consensus 49 eEIqkKLeAAEERR 62 (133)
+.|...|..|++.+
T Consensus 50 ~~I~~~l~~Ae~~~ 63 (173)
T PRK13460 50 SGVQNDINKASELR 63 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554444
No 21
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=39.16 E-value=1.2e+02 Score=20.50 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhcc
Q psy9760 69 KIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVT 131 (133)
Q Consensus 69 ~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~~ 131 (133)
.+..+.+..+..+..+......--+|...-+..|-..++.....+...|.+....|..++..+
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666667777778888999999999999998888888888776554
No 22
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=38.71 E-value=1.5e+02 Score=23.33 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=6.1
Q ss_pred HHhHhHHHHHHHHHHH
Q psy9760 105 RLEISSEKREALINDK 120 (133)
Q Consensus 105 Kme~~kEnReA~l~al 120 (133)
+++...+..++.+-.+
T Consensus 117 ~~~~~~~~~e~~V~~~ 132 (170)
T PF14943_consen 117 EEEERKERKEEEVRQL 132 (170)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 23
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=38.40 E-value=32 Score=31.20 Aligned_cols=16 Identities=13% Similarity=0.241 Sum_probs=11.3
Q ss_pred CCCCCC-CHHHHHHHHH
Q psy9760 41 DTPVIL-RSESIEEKLK 56 (133)
Q Consensus 41 sp~kd~-SleEIqkKLe 56 (133)
|||-|+ ||||..+++-
T Consensus 410 p~pidp~~leefkrril 426 (442)
T PF06637_consen 410 PPPIDPASLEEFKRRIL 426 (442)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 445554 9999988763
No 24
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=36.97 E-value=2.4e+02 Score=23.18 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q psy9760 50 SIEEKLKQAEERR 62 (133)
Q Consensus 50 EIqkKLeAAEERR 62 (133)
.|...|..|++++
T Consensus 40 ~I~~~l~~Ae~~~ 52 (250)
T PRK14474 40 RIANRWQDAEQRQ 52 (250)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455554443
No 25
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=35.53 E-value=15 Score=20.31 Aligned_cols=7 Identities=43% Similarity=0.923 Sum_probs=5.9
Q ss_pred ccceecc
Q psy9760 8 TEIRCEE 14 (133)
Q Consensus 8 ~evk~~~ 14 (133)
|+|||+|
T Consensus 1 MeikCiN 7 (22)
T PF08452_consen 1 MEIKCIN 7 (22)
T ss_pred CccEEee
Confidence 7889987
No 26
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=35.00 E-value=1.8e+02 Score=21.24 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHH-HHHh-hhHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9760 52 EEKLKQA-EERR-LSLEAEKIAKNAARRSKIEDAAKKRDEK 90 (133)
Q Consensus 52 qkKLeAA-EERR-ks~Ea~~lk~laekre~~~Ev~qKa~E~ 90 (133)
=.|.++| |+.. +.+|.+.|++|-++...+.+-.++.++.
T Consensus 54 f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~ 94 (100)
T PF04568_consen 54 FGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDE 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 4433 3466677777776666655545554444
No 27
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=34.70 E-value=2.5e+02 Score=22.71 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|...|..|++++.
T Consensus 39 ~~I~~~l~~Ae~~~~ 53 (246)
T TIGR03321 39 KKIAGELADADTKKR 53 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455666666655544
No 28
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.96 E-value=4.5e+02 Score=25.25 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy9760 78 SKIEDAAKKRDEKENEFIEQTKETLEKRLEISSE 111 (133)
Q Consensus 78 e~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kE 111 (133)
+..++.++++.++.+.+.+.++...+.-+...++
T Consensus 557 ~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 557 ERERNKKLELEKEAQEALKALKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566677777777777777776666655554
No 29
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.06 E-value=2.3e+02 Score=21.63 Aligned_cols=15 Identities=27% Similarity=0.550 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|...|+.|++.+.
T Consensus 52 ~~I~~~l~~Ae~~~~ 66 (173)
T PRK13453 52 RDINRDIDDAEQAKL 66 (173)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655553
No 30
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=30.78 E-value=2.5e+02 Score=21.71 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEK 69 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~ 69 (133)
++++.+.....|++.....+..+
T Consensus 70 ~l~~Ae~~~~eA~~~~~eye~~L 92 (181)
T PRK13454 70 DLAAAEELKQKAVEAEKAYNKAL 92 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 31
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=30.58 E-value=2.4e+02 Score=21.41 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|...|..|+.++.
T Consensus 52 ~~I~~~l~~Ae~~~~ 66 (175)
T PRK14472 52 KGIQSSIDRAHSAKD 66 (175)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666666554
No 32
>PHA03380 transactivating tegument protein VP16; Provisional
Probab=30.05 E-value=42 Score=30.50 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=29.5
Q ss_pred CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC
Q psy9760 6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT 42 (133)
Q Consensus 6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp 42 (133)
+.+-.|..++..=|.+-|++|.||++++..|..|++|
T Consensus 352 eH~Yar~~~~~NYGsT~Eamld~psp~~~lPgdp~p~ 388 (432)
T PHA03380 352 EHTYARRREKPNYGSTIEALLDPPSPSAVLPGDPVPP 388 (432)
T ss_pred cccccccCCCCCCccchhhccCCCCcccCCCCCCCCC
Confidence 4556788899999999999999999977666655554
No 33
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=29.97 E-value=2.2e+02 Score=20.70 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHh
Q psy9760 49 ESIEEKLKQAEERR 62 (133)
Q Consensus 49 eEIqkKLeAAEERR 62 (133)
+.|...|+.|++.+
T Consensus 29 ~~I~~~l~~A~~~~ 42 (147)
T TIGR01144 29 KKIADGLASAERAK 42 (147)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555554444
No 34
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=29.97 E-value=2.9e+02 Score=22.08 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|...|+.|+..+.
T Consensus 87 ~~I~~~L~~Ae~~k~ 101 (204)
T PRK09174 87 DRIAQDLDQAARLKQ 101 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556666666665554
No 35
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.81 E-value=2.6e+02 Score=21.45 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9760 49 ESIEEKLKQAEERRLS 64 (133)
Q Consensus 49 eEIqkKLeAAEERRks 64 (133)
+.|...|+.|++++..
T Consensus 61 ~~I~~~l~~Ae~~~~e 76 (184)
T PRK13455 61 EGIRSELEEARALREE 76 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777666653
No 36
>KOG2412|consensus
Probab=29.49 E-value=4.6e+02 Score=24.99 Aligned_cols=6 Identities=17% Similarity=0.280 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy9760 96 EQTKET 101 (133)
Q Consensus 96 k~aeEk 101 (133)
+..++|
T Consensus 254 R~~eek 259 (591)
T KOG2412|consen 254 RAEEEK 259 (591)
T ss_pred HHHHHH
Confidence 333333
No 37
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=29.15 E-value=4.3e+02 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.298 Sum_probs=16.6
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHhh
Q psy9760 103 EKRLEISSEKREALINDKMEKLKD 126 (133)
Q Consensus 103 ~~Kme~~kEnReA~l~al~ekLke 126 (133)
..++++-+..|-+.|.++..+|+.
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~ 389 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKA 389 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777888887777765
No 38
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=29.13 E-value=2.6e+02 Score=21.25 Aligned_cols=16 Identities=50% Similarity=0.547 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9760 49 ESIEEKLKQAEERRLS 64 (133)
Q Consensus 49 eEIqkKLeAAEERRks 64 (133)
+.|+..|..|++.+..
T Consensus 53 ~~I~~~l~~A~~~~~e 68 (174)
T PRK07352 53 EAILQALKEAEERLRQ 68 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665543
No 39
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=28.99 E-value=3e+02 Score=21.96 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q psy9760 49 ESIEEKLKQAE--ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKRE 114 (133)
Q Consensus 49 eEIqkKLeAAE--ERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnRe 114 (133)
+-||.+|--++ .+|.++--+-|..+++.+-++-+.++|.++.-|--.+-+-....+|--.+++.-+
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykeale 119 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALE 119 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34455566564 4566666667888899999999999999999877777766666666555655433
No 40
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=28.45 E-value=2.7e+02 Score=21.26 Aligned_cols=25 Identities=8% Similarity=-0.029 Sum_probs=17.4
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIA 71 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk 71 (133)
++++.++....|++.....+.++-.
T Consensus 57 ~l~~Ae~~~~eA~~~~~e~e~~l~~ 81 (173)
T PRK13453 57 DIDDAEQAKLNAQKLEEENKQKLKE 81 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888778887777766664433
No 41
>PF15350 ETAA1: Ewing's tumour-associated antigen 1 homologue
Probab=28.45 E-value=51 Score=32.14 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHhhh
Q psy9760 44 VILRSESIEEKLKQAEERRLS 64 (133)
Q Consensus 44 kd~SleEIqkKLeAAEERRks 64 (133)
+..|.||||+|-..|=-||++
T Consensus 792 RKcSpEEIqRKRQEALvRR~a 812 (814)
T PF15350_consen 792 RKCSPEEIQRKRQEALVRRMA 812 (814)
T ss_pred ccCCHHHHHHHHHHHHHHHhh
Confidence 668999999999999999986
No 42
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.85 E-value=2.6e+02 Score=20.90 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|...|..|+..+.
T Consensus 42 ~~I~~~l~~Ae~~~~ 56 (164)
T PRK14473 42 RRIEESLRDAEKVRE 56 (164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665554
No 43
>PF15456 Uds1: Up-regulated During Septation
Probab=27.85 E-value=1.2e+02 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy9760 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAA 75 (133)
Q Consensus 46 ~SleEIqkKLeAAEERRks~Ea~~lk~lae 75 (133)
-+.||+..+|..+|.|+-.....+|.|.|+
T Consensus 88 rk~ee~~~eL~~le~R~~~~~~rLLeH~Aa 117 (124)
T PF15456_consen 88 RKCEELAQELWKLENRLAEVRQRLLEHTAA 117 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999888889888876
No 44
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=27.73 E-value=41 Score=23.17 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=9.6
Q ss_pred CCcceeEEEecCCCC
Q psy9760 17 KGGIKYDVILAEPAG 31 (133)
Q Consensus 17 asGqaFEVIL~~ps~ 31 (133)
.|||.|+++|..+..
T Consensus 21 ~sgq~~D~~v~d~~g 35 (82)
T PF12690_consen 21 PSGQRYDFVVKDKEG 35 (82)
T ss_dssp SSS--EEEEEE-TT-
T ss_pred CCCCEEEEEEECCCC
Confidence 699999999996654
No 45
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=25.90 E-value=2.7e+02 Score=20.39 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhh
Q psy9760 49 ESIEEKLKQAEERRL 63 (133)
Q Consensus 49 eEIqkKLeAAEERRk 63 (133)
+.|+..|..|++.+.
T Consensus 38 ~~I~~~l~~a~~~~~ 52 (156)
T PRK05759 38 KKIADGLAAAERAKK 52 (156)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655554
No 46
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.62 E-value=3.5e+02 Score=21.61 Aligned_cols=27 Identities=11% Similarity=0.068 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKN 73 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~l 73 (133)
++++.++....|++.....|.++-..-
T Consensus 92 ~L~~Ae~~k~eAe~~~~~ye~~L~~Ar 118 (204)
T PRK09174 92 DLDQAARLKQEADAAVAAYEQELAQAR 118 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777776666665443333
No 47
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=25.10 E-value=94 Score=21.61 Aligned_cols=23 Identities=26% Similarity=0.159 Sum_probs=19.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhhHH
Q psy9760 44 VILRSESIEEKLKQAEERRLSLE 66 (133)
Q Consensus 44 kd~SleEIqkKLeAAEERRks~E 66 (133)
.++|++++..+|.+.|.|.++.+
T Consensus 95 ~~~t~~el~~~L~~~E~~~~~~~ 117 (119)
T PF14223_consen 95 PKMTLEELISRLLAEEMRLKSKE 117 (119)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcc
Confidence 44799999999999999988654
No 48
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=24.53 E-value=4.3e+02 Score=24.15 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRS 78 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre 78 (133)
.+...+.+|..|..++-.++.+-|.+|+....
T Consensus 269 ~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~ 300 (440)
T COG1570 269 QLDQLQRRLHRALRRLLDQKKQRLEHLARRLQ 300 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66778888889999999999999988886654
No 49
>KOG2412|consensus
Probab=24.05 E-value=2.5e+02 Score=26.64 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=4.5
Q ss_pred HhhhHHHHHHHH
Q psy9760 61 RRLSLEAEKIAK 72 (133)
Q Consensus 61 RRks~Ea~~lk~ 72 (133)
+|.++..+.+..
T Consensus 207 q~~eqi~~~~~~ 218 (591)
T KOG2412|consen 207 QRKEQIRERKER 218 (591)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 50
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=23.12 E-value=46 Score=27.47 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=10.9
Q ss_pred ceeEEEecCCCCCC
Q psy9760 20 IKYDVILAEPAGTP 33 (133)
Q Consensus 20 qaFEVIL~~ps~~~ 33 (133)
.=|||||-+|+-++
T Consensus 128 K~yEVILvDp~H~a 141 (204)
T PTZ00026 128 KFYEVILVDPFHNA 141 (204)
T ss_pred ccEEEEEecCCCcc
Confidence 45899999998643
No 51
>PRK04243 50S ribosomal protein L15e; Validated
Probab=23.04 E-value=46 Score=27.29 Aligned_cols=13 Identities=38% Similarity=0.693 Sum_probs=10.3
Q ss_pred eeEEEecCCCCCC
Q psy9760 21 KYDVILAEPAGTP 33 (133)
Q Consensus 21 aFEVIL~~ps~~~ 33 (133)
=|||||-+|+-++
T Consensus 129 ~fEVIlVDp~H~a 141 (196)
T PRK04243 129 WYEVILVDPHHPA 141 (196)
T ss_pred cEEEEEecCCCcc
Confidence 3999999998633
No 52
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=22.94 E-value=3.1e+02 Score=20.05 Aligned_cols=61 Identities=18% Similarity=0.111 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLE 107 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme 107 (133)
++++.+...+.|++.....+..+-..-.+-.+-..++...+....+.-...+.+.....++
T Consensus 43 ~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~ 103 (156)
T PRK05759 43 GLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA 103 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888887777766664433333333333333333333344444444444444433
No 53
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.69 E-value=4e+02 Score=21.19 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke 126 (133)
++++.++..+.|++.....+..+-..-.+-.+-..++...+...-..=...|++.....+++.+..=+...+.....|+.
T Consensus 87 ~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ 166 (205)
T PRK06231 87 EINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQK 166 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777776665555544333333333333333333333333344444444444444444444444444444443
No 54
>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....
Probab=22.65 E-value=47 Score=27.17 Aligned_cols=11 Identities=36% Similarity=0.740 Sum_probs=8.6
Q ss_pred eeEEEecCCCC
Q psy9760 21 KYDVILAEPAG 31 (133)
Q Consensus 21 aFEVIL~~ps~ 31 (133)
=|||||-+|+-
T Consensus 128 ~fEVIlVDp~h 138 (192)
T PF00827_consen 128 WFEVILVDPNH 138 (192)
T ss_dssp EEEEEEE-TTS
T ss_pred eEEEEEecCCc
Confidence 49999999985
No 55
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=22.28 E-value=5e+02 Score=22.26 Aligned_cols=31 Identities=13% Similarity=0.121 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHhhhh
Q psy9760 98 TKETLEKRLEISSEKREALINDKMEKLKDHV 128 (133)
Q Consensus 98 aeEkl~~Kme~~kEnReA~l~al~ekLke~~ 128 (133)
+.....-+....++|++=++..|..+..++-
T Consensus 179 ~~AEa~gra~~eReN~Di~l~~l~~ka~e~R 209 (276)
T PF12037_consen 179 AEAEAEGRAKEERENEDINLEQLRLKAEEER 209 (276)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 3334445566677788888888877777653
No 56
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.05 E-value=3.7e+02 Score=20.59 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRD 88 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~ 88 (133)
++++.++..+.|++.....+.++-..-.+-.+-+.++...+.
T Consensus 66 ~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~ 107 (184)
T PRK13455 66 ELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQ 107 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888887777776544333333333333333333
No 57
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=21.80 E-value=3.6e+02 Score=20.43 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISS 110 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~k 110 (133)
++++.++....|+......+.++-..-.+..+-..++...+...-.+-...|+.....-++...
T Consensus 58 ~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~ 121 (174)
T PRK07352 58 ALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAA 121 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888887777666654433333333333333333333333334444444443333333
No 58
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=21.55 E-value=3.5e+02 Score=20.19 Aligned_cols=63 Identities=21% Similarity=0.200 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEIS 109 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~ 109 (133)
++++.++.-..|++.....++.+-..-.+-.+-+.++...+...-.+-...|.......++..
T Consensus 47 ~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a 109 (164)
T PRK14473 47 SLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEA 109 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788777777776554444444444444444444444444444444444433333
No 59
>KOG2891|consensus
Probab=21.26 E-value=6e+02 Score=22.71 Aligned_cols=65 Identities=31% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760 48 SESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH 127 (133)
Q Consensus 48 leEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~ 127 (133)
+.-.+.|++|-|+||+..+.+.|+ +...++++...+-.++ +.+|.+-+-+..+.| |+.+|+++
T Consensus 380 lkf~fekieareerrkqkeeeklk---~e~qkikeleek~~ee--------edal~~all~~qeir------l~~~lkek 442 (445)
T KOG2891|consen 380 LKFEFEKIEAREERRKQKEEEKLK---AEEQKIKELEEKIKEE--------EDALLLALLNLQEIR------LIAELKEK 442 (445)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHH--------HHHHHHHHHhhHHHH------HHHHHHHh
Q ss_pred hh
Q psy9760 128 VS 129 (133)
Q Consensus 128 ~~ 129 (133)
..
T Consensus 443 ~k 444 (445)
T KOG2891|consen 443 AK 444 (445)
T ss_pred hc
No 60
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=20.23 E-value=3.8e+02 Score=20.04 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke 126 (133)
++++.++....|++.....+..+-..-.+-.+-..++...+...-..-...|++.....++..+..=+...+.....|+.
T Consensus 61 ~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~ 140 (156)
T CHL00118 61 NLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEE 140 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888777666654333333333333344444444444444555555555554444444444444444444
Q ss_pred h
Q psy9760 127 H 127 (133)
Q Consensus 127 ~ 127 (133)
.
T Consensus 141 ~ 141 (156)
T CHL00118 141 Q 141 (156)
T ss_pred H
Confidence 3
No 61
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.20 E-value=52 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=20.8
Q ss_pred ccceeccccCCcceeEEEecCCCCC
Q psy9760 8 TEIRCEEKSKGGIKYDVILAEPAGT 32 (133)
Q Consensus 8 ~evk~~~KrasGqaFEVIL~~ps~~ 32 (133)
.||..+-++-....|++|+++++..
T Consensus 28 ~EIe~Lq~~~~dL~~kL~m~~~~~~ 52 (60)
T PF14916_consen 28 AEIERLQKRNKDLTFKLIMKQPSSS 52 (60)
T ss_pred HHHHHHHHhccccceeeeecCCCCC
Confidence 3677788888999999999988874
No 62
>KOG0155|consensus
Probab=20.05 E-value=5.6e+02 Score=24.45 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=37.3
Q ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q psy9760 59 EERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKM 121 (133)
Q Consensus 59 EERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ 121 (133)
++|-+-.|+++ |++++||.. + ..|+-..-+.+.-.+||+....+-.|.|-+|.
T Consensus 439 ~er~~r~ea~l-------rererev~k-~--~~~q~~e~~rerek~k~~e~~~~y~all~d~i 491 (617)
T KOG0155|consen 439 QEREKRLEAQL-------REREREVEK-E--LGNQLRERTREREKQKRGEAEDTYRALLIDLI 491 (617)
T ss_pred HHHHHHHHHHH-------HHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566664 667777643 2 34556667788888899999999888887765
Done!