Query psy9760
Match_columns 133
No_of_seqs 86 out of 88
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:53:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ryc_E Stathmin-4; alpha-tubul 100.0 5.8E-54 2E-58 327.4 15.7 123 5-127 1-124 (143)
2 4f61_I Stathmin-like domain R4 100.0 1.4E-50 4.7E-55 329.5 14.8 125 6-130 1-126 (240)
3 4f6r_C Stathmin-like domain R1 100.0 6.2E-35 2.1E-39 206.9 8.0 80 6-86 1-82 (87)
4 4f61_I Stathmin-like domain R4 99.9 6.7E-27 2.3E-31 190.4 9.6 83 46-128 144-226 (240)
5 4f6r_C Stathmin-like domain R1 92.9 0.12 4E-06 36.3 4.1 29 99-127 44-72 (87)
6 1kil_E Complexin I snare-compl 67.1 18 0.00062 22.7 5.5 16 49-64 12-27 (49)
7 1wlq_A Geminin; coiled-coil; 2 65.1 31 0.0011 23.7 7.1 10 115-124 72-81 (83)
8 3rk3_E Complexin-1; snare prot 63.1 21 0.00074 23.4 5.5 17 48-64 14-30 (63)
9 1f5n_A Interferon-induced guan 61.0 89 0.003 27.6 11.2 13 46-58 480-492 (592)
10 3nr7_A DNA-binding protein H-N 55.8 35 0.0012 23.2 6.0 36 47-82 28-63 (86)
11 1f5n_A Interferon-induced guan 54.0 1E+02 0.0035 27.2 10.1 23 93-115 541-563 (592)
12 1uii_A Geminin; human, DNA rep 52.1 31 0.0011 23.7 5.2 42 83-133 40-81 (83)
13 1gmj_A ATPase inhibitor; coile 48.6 63 0.0021 22.2 8.0 26 53-78 23-50 (84)
14 3u1c_A Tropomyosin alpha-1 cha 39.8 87 0.003 21.3 11.3 30 95-125 67-96 (101)
15 3r2p_A Apolipoprotein A-I; amp 35.4 1.3E+02 0.0045 22.1 9.7 36 94-129 123-158 (185)
16 2v7q_J ATPase inhibitor; ION t 32.8 44 0.0015 22.1 3.3 30 53-82 23-54 (66)
17 2wvr_A Geminin; DNA replicatio 31.7 1.1E+02 0.0037 24.3 6.0 19 81-99 107-125 (209)
18 3u59_A Tropomyosin beta chain; 30.2 1.3E+02 0.0043 20.3 11.3 79 46-126 2-97 (101)
19 1l4a_E Synaphin A; snare, snar 29.6 43 0.0015 22.8 2.9 17 48-64 18-34 (79)
20 2a01_A Apolipoprotein A-I; fou 26.0 2.2E+02 0.0077 21.8 7.1 85 47-131 49-137 (243)
21 2llh_A Nucleophosmin; nucleola 31.1 15 0.00051 24.9 0.0 26 39-64 15-40 (74)
22 3j21_M 50S ribosomal protein L 24.2 27 0.00094 27.4 1.3 11 21-31 127-137 (194)
23 3jyw_L 60S ribosomal protein L 24.2 32 0.0011 27.0 1.7 14 20-33 127-140 (192)
24 1ffk_I Ribosomal protein L15E; 23.9 28 0.00095 27.4 1.3 13 21-33 128-140 (194)
25 4a17_L RPL15, ribosomal protei 23.9 29 0.00098 27.5 1.4 12 20-31 128-139 (204)
26 2jo8_A Serine/threonine-protei 23.6 1.4E+02 0.0048 18.6 5.9 15 44-58 8-22 (51)
27 1vq8_M 50S ribosomal protein L 23.4 30 0.001 27.2 1.4 11 21-31 128-138 (194)
28 16vp_A Protein (VP16, VMW65, A 22.6 21 0.00073 30.5 0.5 37 6-42 315-351 (366)
29 3iz5_P 60S ribosomal protein L 20.6 29 0.001 27.5 0.8 12 20-31 128-139 (204)
30 3ryc_E Stathmin-4; alpha-tubul 20.2 2.7E+02 0.0093 20.6 9.2 26 65-90 76-105 (143)
No 1
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=100.00 E-value=5.8e-54 Score=327.43 Aligned_cols=123 Identities=31% Similarity=0.385 Sum_probs=112.4
Q ss_pred CCcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q psy9760 5 FPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDA 83 (133)
Q Consensus 5 ~~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev 83 (133)
++||+|++||||+|||||||||+|||+++.+|..++|| ++|+||+|||+||+||||||+|+||++|++||++|+|++||
T Consensus 1 ~~d~~vk~l~KrasGqafEvIL~pps~~~~~~~~~s~P~~k~~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe~Ev 80 (143)
T 3ryc_E 1 XADMEVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREV 80 (143)
T ss_dssp -CCCEEEEEEEETTEEEEEEEEECCSSCSSCC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhcccCCCCceeeeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999977655444444 49999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760 84 AKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH 127 (133)
Q Consensus 84 ~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~ 127 (133)
+||++|+|||||++|+|+|++||++++|||+|||++|++||++|
T Consensus 81 lqKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek 124 (143)
T 3ryc_E 81 IQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 124 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999975
No 2
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=100.00 E-value=1.4e-50 Score=329.48 Aligned_cols=125 Identities=29% Similarity=0.350 Sum_probs=114.6
Q ss_pred CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHH
Q psy9760 6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT-PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAA 84 (133)
Q Consensus 6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp-~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~ 84 (133)
.||+|++|+||+|||||||||+|||++++||..++|| ++|+||+|||+||+||||||+|+||++|++||++|+|+++|+
T Consensus 1 ~d~~vk~l~KrasGqafEVILkpps~~~~~~~~~s~P~kk~~SleEIqkKLeAAEERRks~Ea~~lk~laekrEhe~evl 80 (240)
T 4f61_I 1 ADMEVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVI 80 (240)
T ss_dssp CCCEEEEEEECSSCEEEEEEEECCSSCSSCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCchhHHhccccCCCceeeeecCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999977655444444 499999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhc
Q psy9760 85 KKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSV 130 (133)
Q Consensus 85 qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~ 130 (133)
||++|+|||||++|+++|++||++++|||+|||++|++||++|...
T Consensus 81 qKa~Een~~F~k~aeEkL~~KME~~kEnReA~laal~erLkek~~~ 126 (240)
T 4f61_I 81 QRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKH 126 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998654
No 3
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=100.00 E-value=6.2e-35 Score=206.88 Aligned_cols=80 Identities=25% Similarity=0.248 Sum_probs=57.8
Q ss_pred CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Q psy9760 6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT--PVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDA 83 (133)
Q Consensus 6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp--~kd~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev 83 (133)
.||+|++||||+|||||||||+|||+++ +|.+++|| ++|+||+|||+||+||+|||+++||++|++|+++|+|++||
T Consensus 1 ~dm~vk~l~KrasGqafEvILkpps~~~-~~~~~~s~Pkkk~~SleeIqkKLeAAeERRks~EA~~L~~Laekreh~~EV 79 (87)
T 4f6r_C 1 ADMEVIELNKATSGQSWEVILKPPSFDG-VPEFNASLPRRRDPSLEEIQKKLEAAEERRKAHFAAMLERLQEKDKHAEEV 79 (87)
T ss_dssp --------CEETTEEEEEEEEECCCC----------------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhcccCCCcceEEEecCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999866 44455544 49999999999999999999999999999999999999999
Q ss_pred HHH
Q psy9760 84 AKK 86 (133)
Q Consensus 84 ~qK 86 (133)
++-
T Consensus 80 ~k~ 82 (87)
T 4f6r_C 80 RKN 82 (87)
T ss_dssp HHH
T ss_pred Hhc
Confidence 873
No 4
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=99.94 E-value=6.7e-27 Score=190.37 Aligned_cols=83 Identities=27% Similarity=0.427 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q psy9760 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLK 125 (133)
Q Consensus 46 ~SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLk 125 (133)
..+++||+||+||+|||+++|+++|++||++|+|+++|+||++++|||||+|++++|.+||++++|||+|++++|++||+
T Consensus 144 ~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e~n~~f~k~~eekl~~KmE~~kEnRea~~~a~~ErL~ 223 (240)
T 4f61_I 144 MAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQ 223 (240)
T ss_dssp HHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q psy9760 126 DHV 128 (133)
Q Consensus 126 e~~ 128 (133)
+|.
T Consensus 224 ek~ 226 (240)
T 4f61_I 224 EKD 226 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 974
No 5
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, subtilisin, tubulin; HET: GTP GDP MES; 2.64A {Artificial gene}
Probab=92.93 E-value=0.12 Score=36.30 Aligned_cols=29 Identities=31% Similarity=0.570 Sum_probs=24.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHhhh
Q psy9760 99 KETLEKRLEISSEKREALINDKMEKLKDH 127 (133)
Q Consensus 99 eEkl~~Kme~~kEnReA~l~al~ekLke~ 127 (133)
-+.++.||++++|+|.++.+.+.++|.++
T Consensus 44 leeIqkKLeAAeERRks~EA~~L~~Laek 72 (87)
T 4f6r_C 44 LEEIQKKLEAAEERRKAHFAAMLERLQEK 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567899999999999999999999874
No 6
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=67.12 E-value=18 Score=22.69 Aligned_cols=16 Identities=50% Similarity=0.613 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhh
Q psy9760 49 ESIEEKLKQAEERRLS 64 (133)
Q Consensus 49 eEIqkKLeAAEERRks 64 (133)
.|++.-|..||++|+.
T Consensus 12 ~E~~eAlreaEe~Rk~ 27 (49)
T 1kil_E 12 EERQEALRQAEEERKA 27 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7899999999999984
No 7
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=65.06 E-value=31 Score=23.75 Aligned_cols=10 Identities=20% Similarity=0.527 Sum_probs=5.5
Q ss_pred HHHHHHHHHH
Q psy9760 115 ALINDKMEKL 124 (133)
Q Consensus 115 A~l~al~ekL 124 (133)
-+|+++.+||
T Consensus 72 q~la~~i~~L 81 (83)
T 1wlq_A 72 QYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 3555555555
No 8
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=63.10 E-value=21 Score=23.36 Aligned_cols=17 Identities=47% Similarity=0.554 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy9760 48 SESIEEKLKQAEERRLS 64 (133)
Q Consensus 48 leEIqkKLeAAEERRks 64 (133)
-+|++.-|..||+||+.
T Consensus 14 e~E~~eAlrq~Ee~Rk~ 30 (63)
T 3rk3_E 14 FEEAQEALRQAEEERKA 30 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47899999999999974
No 9
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.00 E-value=89 Score=27.64 Aligned_cols=13 Identities=8% Similarity=0.069 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHH
Q psy9760 46 LRSESIEEKLKQA 58 (133)
Q Consensus 46 ~SleEIqkKLeAA 58 (133)
-+|-+-++.+++.
T Consensus 480 ~~l~~~~k~~~~~ 492 (592)
T 1f5n_A 480 QTLTEKEKEIEVE 492 (592)
T ss_dssp SSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 10
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=55.78 E-value=35 Score=23.19 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIED 82 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~E 82 (133)
.|+++..||...-+-|+..+.+..+..+++.++..+
T Consensus 28 ~Lee~leKl~~VveERree~~~~~~~~~er~~Kl~~ 63 (86)
T 3nr7_A 28 TLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQ 63 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888887444444444455555555555444
No 11
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.96 E-value=1e+02 Score=27.22 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHH
Q psy9760 93 EFIEQTKETLEKRLEISSEKREA 115 (133)
Q Consensus 93 ~F~k~aeEkl~~Kme~~kEnReA 115 (133)
++.+.-+--|..||..-+...++
T Consensus 541 ~~~~e~~~~~~~~~~~~~~~~~~ 563 (592)
T 1f5n_A 541 QLLKEQERTLALKLQEQEQLLKE 563 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333333
No 12
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.10 E-value=31 Score=23.71 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhhccCC
Q psy9760 83 AAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSVTTY 133 (133)
Q Consensus 83 v~qKa~E~~~~F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~~~~~ 133 (133)
+|..++++|..+....+. .+.--+.+..+.+.|++-++.|.|
T Consensus 40 AL~eaL~EN~~Lh~~ie~---------l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQ---------KDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677665555433 222336777788888876665543
No 13
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=48.65 E-value=63 Score=22.18 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=17.0
Q ss_pred HHHHHHHHHh--hhHHHHHHHHHHHHHh
Q psy9760 53 EKLKQAEERR--LSLEAEKIAKNAARRS 78 (133)
Q Consensus 53 kKLeAAEERR--ks~Ea~~lk~laekre 78 (133)
-|.++|.|-+ +.++.+.|++|-++..
T Consensus 23 gKrEaA~Ee~YfrqkekEqL~~LKkkl~ 50 (84)
T 1gmj_A 23 GKREQAEEERYFRARAKEQLAALKKHKE 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4667776655 5667777777766553
No 14
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.80 E-value=87 Score=21.32 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHh
Q psy9760 95 IEQTKETLEKRLEISSEKREALINDKMEKLK 125 (133)
Q Consensus 95 ~k~aeEkl~~Kme~~kEnReA~l~al~ekLk 125 (133)
...+..+|... +....+=|+..++|..|++
T Consensus 67 L~ea~~kLee~-ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 67 LHKSEDSLLFA-EENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 33444444433 4445556678888888876
No 15
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=35.40 E-value=1.3e+02 Score=22.06 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhhhh
Q psy9760 94 FIEQTKETLEKRLEISSEKREALINDKMEKLKDHVS 129 (133)
Q Consensus 94 F~k~aeEkl~~Kme~~kEnReA~l~al~ekLke~~~ 129 (133)
|.....++++..|++.+..=.-+...|+.||.+|++
T Consensus 123 y~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e 158 (185)
T 3r2p_A 123 LRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVD 158 (185)
T ss_dssp HHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444433
No 16
>2v7q_J ATPase inhibitor; ION transport, mitochondrion, transit peptide, inhibitor Pro hydrolase; HET: ATP ADP; 2.1A {Bos taurus} SCOP: h.4.8.1
Probab=32.79 E-value=44 Score=22.06 Aligned_cols=30 Identities=27% Similarity=0.207 Sum_probs=17.1
Q ss_pred HHHHHHHHHh--hhHHHHHHHHHHHHHhhHHH
Q psy9760 53 EKLKQAEERR--LSLEAEKIAKNAARRSKIED 82 (133)
Q Consensus 53 kKLeAAEERR--ks~Ea~~lk~laekre~~~E 82 (133)
-|.+||.|-. +.++.+.|+.|-++.+.+.+
T Consensus 23 GKrEaA~Ee~Yfrk~ekEQL~~LKkkl~eq~~ 54 (66)
T 2v7q_J 23 GKREQAEEERYFRARAKEQLAALKKHHENEIS 54 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667776655 55677777777666554443
No 17
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.69 E-value=1.1e+02 Score=24.28 Aligned_cols=19 Identities=5% Similarity=0.095 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9760 81 EDAAKKRDEKENEFIEQTK 99 (133)
Q Consensus 81 ~Ev~qKa~E~~~~F~k~ae 99 (133)
+-+|..++++|..+....+
T Consensus 107 R~AL~eaLeEN~~Lh~~ie 125 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIE 125 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655544
No 18
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.18 E-value=1.3e+02 Score=20.30 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred CCHHHHHHHHH-------HHHHHhhhHHHHHHHHHHH---HHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhH
Q psy9760 46 LRSESIEEKLK-------QAEERRLSLEAEKIAKNAA---RRSKIEDAAKKRDEKEN-------EFIEQTKETLEKRLEI 108 (133)
Q Consensus 46 ~SleEIqkKLe-------AAEERRks~Ea~~lk~lae---kre~~~Ev~qKa~E~~~-------~F~k~aeEkl~~Kme~ 108 (133)
.|++-|.+|+. .|.+|-...++++ +.+-. +.+.+-..+++.+.... .....+..+|.. .+.
T Consensus 2 ~~md~iKkKm~~lk~e~e~a~d~ae~~e~~~-k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~-~ek 79 (101)
T 3u59_A 2 ASMEAIKKKMQMLKLDKENAIDRAEQAEADK-KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ-AEK 79 (101)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 35666777764 4555555555542 22222 22222234444443322 222233333332 234
Q ss_pred hHHHHHHHHHHHHHHHhh
Q psy9760 109 SSEKREALINDKMEKLKD 126 (133)
Q Consensus 109 ~kEnReA~l~al~ekLke 126 (133)
....-|+..++|..|++-
T Consensus 80 ~~~~AE~evasLnRriql 97 (101)
T 3u59_A 80 KATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566788888888763
No 19
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=29.64 E-value=43 Score=22.82 Aligned_cols=17 Identities=47% Similarity=0.634 Sum_probs=4.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy9760 48 SESIEEKLKQAEERRLS 64 (133)
Q Consensus 48 leEIqkKLeAAEERRks 64 (133)
-.|++.-|..||+||+.
T Consensus 18 ~~E~~eAlrqaEE~Rk~ 34 (79)
T 1l4a_E 18 AAAIEEARREAEERRKE 34 (79)
T ss_dssp ------------CHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36888999999999974
No 20
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=26.00 E-value=2.2e+02 Score=21.79 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q psy9760 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKEN----EFIEQTKETLEKRLEISSEKREALINDKME 122 (133)
Q Consensus 47 SleEIqkKLeAAEERRks~Ea~~lk~laekre~~~Ev~qKa~E~~~----~F~k~aeEkl~~Kme~~kEnReA~l~al~e 122 (133)
+++.+..-.....++=-.--..+-.++....+.-++.+++-+++-. .+......++.+.|+.++..=.-+...++.
T Consensus 49 ~~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~ 128 (243)
T 2a01_A 49 NWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQE 128 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhcc
Q psy9760 123 KLKDHVSVT 131 (133)
Q Consensus 123 kLke~~~~~ 131 (133)
+++.+++.+
T Consensus 129 ~~~~~~eel 137 (243)
T 2a01_A 129 GARQKLHEL 137 (243)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhHHHH
No 21
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=31.09 E-value=15 Score=24.86 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhh
Q psy9760 39 AADTPVILRSESIEEKLKQAEERRLS 64 (133)
Q Consensus 39 ~~sp~kd~SleEIqkKLeAAEERRks 64 (133)
|-+|....|++||..||.|.-|..-+
T Consensus 15 pktPkgpssvedIKaKmqasieKg~s 40 (74)
T 2llh_A 15 PKTPKGPSSVEDIKAKMQASIEKGGS 40 (74)
Confidence 33454556999999999999776643
No 22
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.21 E-value=27 Score=27.42 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=9.5
Q ss_pred eeEEEecCCCC
Q psy9760 21 KYDVILAEPAG 31 (133)
Q Consensus 21 aFEVIL~~ps~ 31 (133)
=|||||-+|+-
T Consensus 127 ~fEVILVDp~H 137 (194)
T 3j21_M 127 WFEVIMVDPHH 137 (194)
T ss_dssp EEEEEEECSSC
T ss_pred eEEEEEEcCCC
Confidence 49999999885
No 23
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=24.19 E-value=32 Score=27.03 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.0
Q ss_pred ceeEEEecCCCCCC
Q psy9760 20 IKYDVILAEPAGTP 33 (133)
Q Consensus 20 qaFEVIL~~ps~~~ 33 (133)
-=|||||-+|+-++
T Consensus 127 K~fEVILVDp~H~a 140 (192)
T 3jyw_L 127 KYFEVILVDPQHKA 140 (192)
T ss_dssp EEEEEEEECSSCSS
T ss_pred ceEEEEEecCCchh
Confidence 35999999998644
No 24
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=23.88 E-value=28 Score=27.39 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=10.4
Q ss_pred eeEEEecCCCCCC
Q psy9760 21 KYDVILAEPAGTP 33 (133)
Q Consensus 21 aFEVIL~~ps~~~ 33 (133)
=|||||-+|+-++
T Consensus 128 ~yEVILVDp~H~a 140 (194)
T 1ffk_I 128 WFEVILVDRDHPA 140 (194)
T ss_pred EEEEEEEcCCcHh
Confidence 4999999998633
No 25
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=23.87 E-value=29 Score=27.50 Aligned_cols=12 Identities=50% Similarity=0.802 Sum_probs=10.0
Q ss_pred ceeEEEecCCCC
Q psy9760 20 IKYDVILAEPAG 31 (133)
Q Consensus 20 qaFEVIL~~ps~ 31 (133)
-=|||||-+|+-
T Consensus 128 K~fEVILVDp~H 139 (204)
T 4a17_L 128 KFYEVILADPSH 139 (204)
T ss_dssp EEEEEEEECTTS
T ss_pred ceEEEEEecCCc
Confidence 359999999985
No 26
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=23.61 E-value=1.4e+02 Score=18.63 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=12.3
Q ss_pred CCCCHHHHHHHHHHH
Q psy9760 44 VILRSESIEEKLKQA 58 (133)
Q Consensus 44 kd~SleEIqkKLeAA 58 (133)
|++|.+|++..|...
T Consensus 8 k~ls~eEL~~rl~~L 22 (51)
T 2jo8_A 8 KSWTVEDLQKRLLAL 22 (51)
T ss_dssp GGSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHc
Confidence 678999999988544
No 27
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=23.44 E-value=30 Score=27.23 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=9.6
Q ss_pred eeEEEecCCCC
Q psy9760 21 KYDVILAEPAG 31 (133)
Q Consensus 21 aFEVIL~~ps~ 31 (133)
=|||||-+|+-
T Consensus 128 ~yEVILVDp~H 138 (194)
T 1vq8_M 128 WHEVILIDPNH 138 (194)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEcCCc
Confidence 39999999985
No 28
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein; 2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Probab=22.64 E-value=21 Score=30.47 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=1.5
Q ss_pred CcccceeccccCCcceeEEEecCCCCCCCCCCCCCCC
Q psy9760 6 PATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADT 42 (133)
Q Consensus 6 ~~~evk~~~KrasGqaFEVIL~~ps~~~~~p~~~~sp 42 (133)
+..-.|..++..=|.+-|++|.||++++.-|..|++|
T Consensus 315 eH~Yar~~~~~NYGst~EamLd~p~~~~~lpgdp~pp 351 (366)
T 16vp_A 315 EHAYSRAPTKNNYGSTIEGLLDLPDDDAPEEAGLAAP 351 (366)
T ss_dssp ----------------------------------CCC
T ss_pred cccccCCCCCCCCcchhhhhcCCCCcccCCCCCCCCc
Confidence 3445677888889999999999998866555555544
No 29
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=20.58 E-value=29 Score=27.47 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=9.9
Q ss_pred ceeEEEecCCCC
Q psy9760 20 IKYDVILAEPAG 31 (133)
Q Consensus 20 qaFEVIL~~ps~ 31 (133)
-=|||||-+|+-
T Consensus 128 K~fEVILVDp~H 139 (204)
T 3iz5_P 128 KYFEIILVDVAH 139 (204)
T ss_dssp EEEEEEEEESSS
T ss_pred ceEEEEEecCCc
Confidence 359999999885
No 30
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=20.24 E-value=2.7e+02 Score=20.65 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHH
Q psy9760 65 LEAEKIAKNAAR----RSKIEDAAKKRDEK 90 (133)
Q Consensus 65 ~Ea~~lk~laek----re~~~Ev~qKa~E~ 90 (133)
++.+||.+-.+. -.+-++.+...+|.
T Consensus 76 he~EvlqKa~Een~~F~k~aeEkL~~KME~ 105 (143)
T 3ryc_E 76 HEREVIQKAIEENNNFIKMAKEKLAQKMES 105 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555554432 12233455555554
Done!