RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9760
(133 letters)
>gnl|CDD|109874 pfam00836, Stathmin, Stathmin family. The Stathmin family of
proteins play an important role in the regulation of the
microtubule cytoskeleton. They regulate microtubule
dynamics by promoting depolymerization of microtubules
and/or preventing polymerisation of tubulin
heterodimers.
Length = 140
Score = 39.2 bits (91), Expect = 9e-05
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 9 EIRCEEKSKGGIKYDVILAEPA-GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEA 67
E++ K G +++IL P+ + P ++ L E I++KL+ AEERR S EA
Sbjct: 4 EVKQLNKRASGQAFELILKPPSFDSVPEFNLSSPKKKDLSLEEIQKKLEAAEERRKSQEA 63
Query: 68 EKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
E + + A +R + +K E+ N F + +E L +++E E REA + K+E+L++
Sbjct: 64 EVLKQLAEKREHEREVLQKAIEENNNFSKMAEEKLTQKMESIKENREAQLAAKLERLQE 122
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 32.1 bits (74), Expect = 0.064
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 46 LRSESIEEKLKQAEERRLSL------EAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTK 99
+R + E K+K+AEE + EAE I K A +K E+ K R+E E E E+
Sbjct: 24 VRKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAK-EEIHKLRNEFEKELRERRN 82
Query: 100 E--TLEKRLEISSEKREALINDKMEKLKD 126
E LEKRL ++E ++ K+E L+
Sbjct: 83 ELQKLEKRLL----QKEENLDRKLELLEK 107
Score = 29.0 bits (66), Expect = 0.76
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 52 EEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSE 111
+E L +A+E L E + RR++++ K+ +KE E +++ E LEKR E E
Sbjct: 56 KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKE-ENLDRKLELLEKR-EEELE 113
Query: 112 KREALINDKMEKLK 125
K+E + K ++L+
Sbjct: 114 KKEKELEQKQQELE 127
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.4 bits (72), Expect = 0.10
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 45 ILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEK 104
+ + E +++ +E +E E R + + K+ +K E + E
Sbjct: 207 LEEEGTPSELIREIKEELEEIEKE--------RESLLEELKELAKKYLEELLALYEY--- 255
Query: 105 RLEISSEKREALINDKMEK 123
LEI E+ EAL
Sbjct: 256 -LEIELERAEALSKFLKTD 273
Score = 26.8 bits (60), Expect = 4.0
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 53 EKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEK 112
+KL+ L + K +E+ K +E+ + ++ KE E+ E+ +E
Sbjct: 60 DKLRSYLP---KLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEI 116
Query: 113 REALINDKMEKLK 125
+E + ++E+L+
Sbjct: 117 KE--LEQEIERLE 127
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.2 bits (71), Expect = 0.11
Identities = 16/79 (20%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEI 108
E ++EK+K + + L+ K+ S ++ K + E++NE ++ + +K +
Sbjct: 280 EKLQEKIKALKYQLKRLK--KMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKK 337
Query: 109 SSEKREAL--INDKMEKLK 125
+K++ + + +++EKL+
Sbjct: 338 EEKKKKQIERLEERIEKLE 356
>gnl|CDD|220555 pfam10079, DUF2317, Uncharacterized protein conserved in bacteria
(DUF2317). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 541
Score = 30.6 bits (70), Expect = 0.22
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 36 LKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFI 95
L+ A++ + + E + +L+ +R L EA KI + +E A E I
Sbjct: 415 LEEKANSEIDIDFEEAKAELEAQFKR-LREEAAKIDPS------LEGAL----EANEAKI 463
Query: 96 EQTKETLEKRLEISSEKREALINDKMEKLKDH 127
+ E LEKRL + ++ + + ++L+
Sbjct: 464 LKQLEFLEKRLLKAQRRKHEELLRQFDRLQTA 495
>gnl|CDD|233499 TIGR01631, Trypano_RHS, trypanosome RHS (retrotransposon hot spot)
family. This model describes full-length and
part-length members of the RHS (retrotransposon hot
spot) family in Trypanosoma brucei and Trypanosoma
cruzi. Members of this family are frequently interrupted
by non-LTR retrotransposons inserted at exactly the same
relative position.
Length = 760
Score = 30.2 bits (68), Expect = 0.30
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 14 EKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERR 62
EK KG I YD A+ PPP + VIL S E K+ ++R
Sbjct: 356 EKVKGYIIYDF--AKDDDEPPPADPPSGWGVILLSSPNESNFKEWSKQR 402
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 29.5 bits (67), Expect = 0.38
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 46 LRSESIEEKLKQ-----AEERRLSLEAEKIAKNAARRSKI-EDAAKKRDEKENE 93
R E E+ LK EE + E +K + A+ +K+ + +K +EKE +
Sbjct: 264 TREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
>gnl|CDD|236529 PRK09465, tolC, outer membrane channel protein; Reviewed.
Length = 446
Score = 29.5 bits (67), Expect = 0.51
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAAR 76
+ +S+ LK+AE+R LSL + +++++ AR
Sbjct: 227 KPQSVNALLKEAEKRNLSLLSARLSQDLAR 256
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 29.1 bits (66), Expect = 0.66
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 31 GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAAR-RSKIEDAAKK 86
G PP LK E EEK ++A E+ EA K A+ ++R S+I +++KK
Sbjct: 81 GKPPELKAETLEERREIREEAEEKWEEALEKGDLEEARKYAQRSSRLTSEIVESSKK 137
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 28.4 bits (64), Expect = 0.84
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 47 RSESIEEKLKQAEERRLSLEA------EKIAKNAARRSKIEDAAKKRDEKE-NEFIEQTK 99
R I + L +AE + +A +++ + + S+I + AKK E+ E + +
Sbjct: 38 RQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAE 97
Query: 100 ETLEKRLEISSEKREALINDKMEKLKDHVSVTT 132
E LE+ E + + EA +E+L+ V+
Sbjct: 98 EELERIKEAAEAEIEAEKERALEELRAEVAELA 130
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 28.8 bits (65), Expect = 0.87
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 59 EERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKR 113
R++ +K+ + K++ A + +E +EF EQ+K+ LE + +IS+ K+
Sbjct: 297 GPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ 351
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 29.0 bits (64), Expect = 0.87
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 52 EEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAK----KRDEKENEFIEQTKETLEKRLE 107
E+ K+AEE + + E KI A++ ED K K+DE+E + I K+ EK+ E
Sbjct: 1712 AEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
Query: 108 ISSEKREALINDKMEK 123
+++EA+I +++++
Sbjct: 1772 EIRKEKEAVIEEELDE 1787
Score = 26.6 bits (58), Expect = 4.8
Identities = 21/75 (28%), Positives = 34/75 (45%)
Query: 51 IEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISS 110
+E K+AEE + + EA+K A+ A +++ + +K E + E E +
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 111 EKREALINDKMEKLK 125
EK EA K E K
Sbjct: 1364 EKAEAAEKKKEEAKK 1378
Score = 26.3 bits (57), Expect = 7.3
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 52 EEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSE 111
E+ K+AEE + + E KI + ED K + K+ E E+ K+ ++
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Query: 112 KREALINDKMEKLK 125
K E L + E+ K
Sbjct: 1703 KAEELKKKEAEEKK 1716
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 28.7 bits (65), Expect = 0.92
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 38 TAADT-PVILRSESIE--EKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEF 94
+A D + +I L E R+ +AE+ AA K ++ + ++E E E+
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERMVKDAEE---YAAEDKKRKERIEAKNEAE-EY 536
Query: 95 IEQTKETLEKRLEISSEKREALINDKMEKLKDHV 128
+ +++L++ + E + + + +E LK+ +
Sbjct: 537 VYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEEL 570
Score = 27.6 bits (62), Expect = 2.3
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 46 LRSESIEEKLKQAEERRLSLEAEKI---AKNAAR------RSKIEDAAKKRDEKENEFIE 96
L + IE +K AEE + K AKN A +++ K E + + +E
Sbjct: 501 LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVE 560
Query: 97 QTKETLEKRLEISSEKREALINDKMEKLKDHV 128
+ E L++ E+ E +E I K E+L+ V
Sbjct: 561 EAIEWLKE--ELEGEDKEE-IEAKTEELQKVV 589
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 28.5 bits (64), Expect = 1.0
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEI 108
+I E+ +QAE + L+A+ +++ +E +++F E E L K +
Sbjct: 674 LAIAERKQQAETQLRQLDAQLKQLLEQQQAFLE-------ALKDDFRELRTERLAKWQVV 726
Query: 109 SSEKREAL 116
E L
Sbjct: 727 EGELDNQL 734
Score = 26.6 bits (59), Expect = 4.6
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 52 EEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSE 111
L++ + + SL+ + A R+ + E ++ D + + +EQ + LE + +
Sbjct: 655 RLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLE---ALKDD 711
Query: 112 KREALINDKMEKLKDHVSVT 131
RE +++ K +
Sbjct: 712 FRELR-TERLAKWQVVEGEL 730
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease
activity) and DNA repair processes (long-patch base
excision repair) in eukaryotes and archaea. Interaction
between FEN1 and PCNA (Proliferating cell nuclear
antigen) is an essential prerequisite to FEN1's DNA
replication functionality and stimulates FEN1 nuclease
activity by 10-50 fold. FEN1 belongs to the
FEN1-EXO1-like family of structure-specific, 5'
nucleases. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain) of variable length (approximately 45 residues in
FEN1 PIN domains) and a H3TH (helix-3-turn-helix)
domain, an atypical helix-hairpin-helix-2-like region.
Both the H3TH domain (not included here) and the helical
arch/clamp region are involved in DNA binding. Nucleases
within this group also have a carboxylate-rich active
site that is involved in binding essential divalent
metal ion cofactors (Mg2+/Mn2+). FEN1 has a C-terminal
extension containing residues forming the consensus
PIP-box - Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1
to PCNA.
Length = 261
Score = 28.2 bits (64), Expect = 1.3
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 31 GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSK--IEDAAK 85
G PP LK+ R E EEKL++A+E + EA K AK R +K +E+ K
Sbjct: 82 GKPPELKSGELEKRRERREEAEEKLEEAKEEGDAEEARKYAKRTVRVTKEIVEECKK 138
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 28.0 bits (63), Expect = 1.5
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 15/91 (16%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEF-------------I 95
+ ++ ++ Q E R +L+ EK + R +E + +E+ + I
Sbjct: 408 DELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGI 467
Query: 96 EQTKETLEK-RLEISSEKREALINDKMEKLK 125
+Q KE +E+ RLE+ +RE + K +L+
Sbjct: 468 QQIKEEIEQVRLELEQAEREGDLA-KAAELQ 497
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.1 bits (63), Expect = 1.5
Identities = 15/71 (21%), Positives = 26/71 (36%)
Query: 53 EKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEK 112
EKL E + E A+ + + EQ ++ L K L+ E+
Sbjct: 98 EKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEE 157
Query: 113 REALINDKMEK 123
+A K+E+
Sbjct: 158 EKAQRVKKIEE 168
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.1 bits (63), Expect = 1.5
Identities = 17/81 (20%), Positives = 26/81 (32%)
Query: 45 ILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEK 104
L + E L E+ KI + K+ +E E IE+ KE K
Sbjct: 291 KLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSK 350
Query: 105 RLEISSEKREALINDKMEKLK 125
EI + + + K
Sbjct: 351 LEEIQKKLEDLEKRLEKLKSN 371
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 28.3 bits (64), Expect = 1.6
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRL-E 107
E E LK+AE+ + LE +K +E+A +++ + I++ K+ ++ + E
Sbjct: 537 EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA----EKEAQQAIKEAKKEADEIIKE 592
Query: 108 ISSEKREALINDKMEKLKD 126
+ ++ + K +L +
Sbjct: 593 LRQLQKGGYASVKAHELIE 611
>gnl|CDD|218425 pfam05091, eIF-3_zeta, Eukaryotic translation initiation factor 3
subunit 7 (eIF-3). This family is made up of eukaryotic
translation initiation factor 3 subunit 7 (eIF-3
zeta/eIF3 p66/eIF3d). Eukaryotic initiation factor 3 is
a multi-subunit complex that is required for binding of
mRNA to 40 S ribosomal subunits, stabilisation of
ternary complex binding to 40 S subunits, and
dissociation of 40 and 60 S subunits. These functions
and the complex nature of eIF3 suggest multiple
interactions with many components of the translational
machinery. The gene coding for the protein has been
implicated in cancer in mammals.
Length = 517
Score = 27.7 bits (62), Expect = 1.8
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 38 TAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQ 97
TAAD P+ SI L+LEA KI +N A++ +E+ K + ++EN F ++
Sbjct: 288 TAADPPLDDDENSINS------PSSLALEATKINQNFAQQVLLENDEKYQFDEENPFYDE 341
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 27.6 bits (62), Expect = 1.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Query: 62 RLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKM 121
R +L+AE+ + K + K+ EK +E E +EKR E + E D++
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEI 172
Query: 122 EKLK 125
LK
Sbjct: 173 AFLK 176
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 27.8 bits (62), Expect = 1.9
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENE--FIEQTKETLEKRL 106
+EE ++ EE+ +L E A R ++ + + E NE +++ E+LE+RL
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Query: 107 EISSEKREALIND 119
E SE+ E L +
Sbjct: 414 ERLSERLEDLKEE 426
Score = 27.4 bits (61), Expect = 2.8
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRL 106
R E +EE+L++ EE L+ + + +E+A K E+ E E+ + E+
Sbjct: 738 RLEELEEELEELEEELEELQER-LEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796
Query: 107 EISSEKREA 115
E+ E EA
Sbjct: 797 ELEEELEEA 805
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 27.7 bits (62), Expect = 2.0
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 53 EKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRD-EKENEFIEQTKETLEKRLEISSE 111
E+LKQ E L + K AA K+E A KK + I Q KE +E++ E E
Sbjct: 37 EELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEE 96
Query: 112 KREAL 116
+ AL
Sbjct: 97 LKRAL 101
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 27.7 bits (63), Expect = 2.0
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 53 EKLKQAEERRLSLEAEKIAKNAAR--RSKIEDAAKKRDEKENEFIEQTKE------TLEK 104
++L + +E R L+ E A R SK AK++ E I + KE LE
Sbjct: 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEA 87
Query: 105 RLEISSEKREAL 116
L+ + E L
Sbjct: 88 ELDELEAELEEL 99
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 27.6 bits (62), Expect = 2.0
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 51 IEEKLKQAEERRLSLEAEKIAKNAARRSKIE-DAAKKRDE--KENEFIEQTKETLEKRLE 107
IEE K+AE + E + R+++E + ++R+E + + Q +ETL++++E
Sbjct: 38 IEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKME 97
Query: 108 ISSEKREAL 116
+K E L
Sbjct: 98 SLDKKEENL 106
Score = 26.8 bits (60), Expect = 4.5
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEI 108
+E L +A+E L AE + RR++++ ++ ++E E +++ E+L+K+ E
Sbjct: 47 TLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQRE-ETLDRKMESLDKKEEN 105
Query: 109 SSEKREALINDKME 122
+K + L N +
Sbjct: 106 LEKKEKELSNKEKN 119
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 27.3 bits (61), Expect = 2.0
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 48 SESIEEKLKQAEERRLSLEAEKIAKNAARRS--KIEDAAKKRDEKENE 93
S+S E KLK+AE++ E K RS KIE +KR K +E
Sbjct: 147 SKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAKYSE 194
>gnl|CDD|206316 pfam14147, Spore_YhaL, Sporulation protein YhaL. This family of
proteins is involved in sporulation. In B. subtilis its
expression is regulated by the early
mother-cell-specific transcription factor sigma-E.
Length = 52
Score = 25.8 bits (57), Expect = 2.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 83 AAKKRDEKENEFIEQTKETLEKRLEISSEKR 113
AK+ EKE EFIE+ E +RLE E+R
Sbjct: 22 TAKEEREKEQEFIEKEGEVYMERLEEERERR 52
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 27.6 bits (62), Expect = 2.3
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 24 VILAEPAGTPPPLKTAADTPVILRSESIEEKL-KQAEERRLSLEAEKIAKNAARRSKIED 82
+++AE K+A D + E IEE+L ++ EE EAEK A ++ +
Sbjct: 43 LVVAESGE----RKSAVDKLAMKPLEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKK 98
Query: 83 AAKKRDEKENEFIEQTKETLEKRLEISSEKREALI 117
A K + ++E + + E R LI
Sbjct: 99 AKKAIKKGKDEEALAEELLELEAEEPEPPLRPRLI 133
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 27.6 bits (62), Expect = 2.3
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 27 AEPAGTPPPLKTAADTPVILRSESIE 52
AEP+G PPPL D PV+L E +
Sbjct: 260 AEPSGDPPPL--PEDAPVLLEVEDLR 283
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 27.3 bits (61), Expect = 2.5
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEI 108
E +E LK+ E LS E++ + + R E E E E+ ++ E++L
Sbjct: 188 EELERALKEKREELLSKLEEELLARLES-KEAALEKQLRLEFERE-KEELRKKYEEKLRQ 245
Query: 109 SSEKREALINDKMEK 123
E++ K++
Sbjct: 246 ELERQAEAHEQKLKN 260
>gnl|CDD|220506 pfam09989, DUF2229, CoA enzyme activase uncharacterized domain
(DUF2229). Members of this family include various
bacterial hypothetical proteins, as well as CoA enzyme
activases. The exact function of this domain has not, as
yet, been defined.
Length = 218
Score = 27.1 bits (61), Expect = 2.5
Identities = 16/78 (20%), Positives = 31/78 (39%)
Query: 40 ADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTK 99
+ + L S + K K+A +RL +K+ + K + A + E + + +
Sbjct: 109 LEKGIRLLSPFLNLKDKEALAKRLYELGKKLGISKEEIKKAVEKALEEQEAFKKDLRKKG 168
Query: 100 ETLEKRLEISSEKREALI 117
E LE +K L+
Sbjct: 169 EEALAYLEEEGKKGIVLL 186
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 26.8 bits (60), Expect = 2.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 47 RSESIEEKLKQAEER------RLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQ 97
R E+I + LK+AEER L+ +K+A+ +I AK R E IE+
Sbjct: 51 RREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEK 107
>gnl|CDD|221059 pfam11285, DUF3086, Protein of unknown function (DUF3086). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 283
Score = 26.9 bits (60), Expect = 3.2
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 51 IEEKLKQAEERRLSLEAEKIAKNAARRSKIE 81
+EE LK E+RR +LE E I K R+ +IE
Sbjct: 2 VEEALKDLEQRRQALEIE-IEKLERRKEQIE 31
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 26.9 bits (60), Expect = 3.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 51 IEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETL 102
+E+ ++ EE+R E E++ + A RS+ +K E + E E+ +
Sbjct: 119 LEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRA 170
>gnl|CDD|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze
analogous reactions and share a common activator, the
metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad
range of substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly bacterial and archaeal, and have
been inferred by homology as being related to both ArgE
and DapE.
Length = 393
Score = 26.8 bits (60), Expect = 3.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 13 EEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILR-SESIEE 53
EEK I+ +V+ E A PPP T D+ ++ R +I+E
Sbjct: 296 EEKYGVKIEVEVVQREDA--PPP--TPPDSEIVRRLKRAIKE 333
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 26.9 bits (60), Expect = 3.6
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 51 IEEKLKQAEERRLSLEAEKI-AKNAARRSKIEDAAKKRDEKENEFIEQTKET--LEKRLE 107
I EK+K +L +++ AK + I++A D K E + E+ +++R +
Sbjct: 23 IVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVADIDAKIEELKAEAIESLDIDERED 82
Query: 108 ISSE--KREALINDKMEKLKDHV 128
I ++ K E + +EK+ D +
Sbjct: 83 IYAQIDKLEKEAYEILEKVLDEI 105
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 26.8 bits (60), Expect = 3.9
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 48 SESIEEKLKQAEERRLSLEAEKIAKNAAR--RSKIEDAAKKRDEKENEFIEQTKETLEKR 105
+KL + +E R L E A R SK A KR E + E + + L+++
Sbjct: 24 DALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEK 83
Query: 106 LEISSEKREALINDKMEKL 124
L+ E + +++ L
Sbjct: 84 LK-ELEAALDELEAELDTL 101
>gnl|CDD|221117 pfam11460, DUF3007, Protein of unknown function (DUF3007). This is
a family of uncharacterized proteins found in bacteria
and eukaryotes.
Length = 104
Score = 26.1 bits (58), Expect = 3.9
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 84 AKKRDEKENEFIEQTKETLEKRLE-ISSEKREALIND 119
++R + + T E L+KR + +S E+ EAL +
Sbjct: 65 MQQRRDYREAYDALTNEELQKRFDSLSPEELEALQAE 101
>gnl|CDD|220700 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 438
Score = 26.9 bits (60), Expect = 4.0
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 85 KKRDEKENEFIEQTKETLEKRLEI-SSEKREALI 117
++ ++ +++T E LEK L KR AL+
Sbjct: 401 VEKQKEAAAELKETAEALEKALADFKDAKRLALL 434
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 26.6 bits (58), Expect = 4.2
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 44 VILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE 103
+I+R E IE+ ++ EE +E E+ + R E+ ++R+E+ E EQ+ ++
Sbjct: 121 LIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE--EQSDDSEH 178
Query: 104 KRLEISSEKREA 115
+ +E + E+
Sbjct: 179 EIIEQDESETES 190
>gnl|CDD|227702 COG5415, COG5415, Predicted integral membrane metal-binding protein
[General function prediction only].
Length = 251
Score = 26.5 bits (58), Expect = 4.3
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 60 ERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALIND 119
E R + K+AK A K + K+ T ++K E + K + L N
Sbjct: 95 EFRNNRRLRKLAKLRAIHRKKLEKLKEETH-----YNATSSIIQKYSEELNAKYQELNNL 149
Query: 120 KMEKLK 125
K EK K
Sbjct: 150 KTEKEK 155
>gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type.
This is the first enzyme of leucine biosynthesis. A
larger family of homologous proteins includes
homocitrate synthase, distinct lineages of
2-isopropylmalate synthase, several distinct,
uncharacterized, orthologous sets in the Archaea, and
other related enzymes. This model describes a family of
2-isopropylmalate synthases found primarily in Bacteria.
The homologous families in the Archaea may represent
isozymes and/or related enzymes [Amino acid
biosynthesis, Pyruvate family].
Length = 494
Score = 26.6 bits (59), Expect = 4.4
Identities = 14/51 (27%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 74 AARRSKIEDAAKKRDEKE-NEFIEQTKETLEKRLEISSEKREALINDKMEK 123
A + ++E+ K D++E ++ E+ KE +K+ E++ E EAL+ ++ +
Sbjct: 332 HAFKDRLEELGFKLDDEELDKLFEKFKELADKKKEVTDEDLEALVFEEKRQ 382
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 26.6 bits (59), Expect = 4.4
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 27 AEPAGTPPPLKTAADTPVILRSESIE 52
+EP+G P PL +L E ++
Sbjct: 259 SEPSGDPVPL--PEPASPLLDVEQLQ 282
>gnl|CDD|214369 CHL00118, atpG, ATP synthase CF0 B' subunit; Validated.
Length = 156
Score = 26.1 bits (58), Expect = 5.0
Identities = 17/78 (21%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRL 106
R E I + L +A E + +A ++ K ++ A K+ + + ++ KE +E L
Sbjct: 54 RKEYIRKNLTKASE--ILAKANELTKQ--YEQELSKARKEAQLEITQSQKEAKEIVENEL 109
Query: 107 EISSEKREALINDKMEKL 124
+ + + ++L+N+ ++L
Sbjct: 110 KQAQKYIDSLLNEATKQL 127
>gnl|CDD|232986 TIGR00464, gltX_bact, glutamyl-tRNA synthetase, bacterial family.
The glutamyl-tRNA synthetases of the eukaryotic cytosol
and of the Archaea are more similar to glutaminyl-tRNA
synthetases than to bacterial glutamyl-tRNA synthetases.
This model models just the bacterial and mitochondrial
forms of the enzyme. In many species, the charging of
tRNA(gln) proceeds first through misacylation with Glu
and then transamidation. For this reason, glutamyl-tRNA
synthetases may act on both tRNA(gln) and tRNA(glu).
This model is highly specific. Proteins with positive
scores below the trusted cutoff may be fragments rather
than full-length sequences [Protein synthesis, tRNA
aminoacylation].
Length = 470
Score = 26.2 bits (58), Expect = 7.2
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 58 AEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKE-NEFIEQTKETLEKRLEISSEKREAL 116
AE RL E +K EDA KK +K E +E K+ L+ E ++E+ ++
Sbjct: 364 AELIRLFFEDKKEVD--------EDAFKKHLKKNVKEVLEALKKKLQALEEWTAEEVKSA 415
Query: 117 INDKMEKLK 125
I E+L
Sbjct: 416 IKQIAEELG 424
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 25.8 bits (56), Expect = 7.3
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 4 LFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRL 63
++ A + C + + AEP+ P T P+ E + Q RL
Sbjct: 115 VYYAKRVPCSQPVSILSPNTLKEAEPSAEVQP--TTMTLPIAEHPTITENQSFQPWPERL 172
Query: 64 SLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE 103
E++ + ++ K K+ + + + +E L+
Sbjct: 173 HNNVEELLQ-SSLSLGGSVQVKAPKPKQEQLLSKLQEYLQ 211
>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional.
Length = 483
Score = 25.8 bits (57), Expect = 7.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 22 YDVILAEPAGTPPPLKTAAD 41
DV+LA PPP A D
Sbjct: 382 VDVVLAPTTAQPPPRVGAFD 401
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 25.7 bits (57), Expect = 8.4
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 42 TPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKET 101
+I+ EK ++ + +S E++A++ I K +++ F EQ K
Sbjct: 512 VALIVPDFDALEKWAESLNKVISASREELARDPKLLKLILPRVNKGNKRLFGF-EQIK-- 568
Query: 102 LEKRLEISSEKREALINDKMEKLKDHV 128
+ L E KLK HV
Sbjct: 569 -KFVLLPKEFTPENGELTPTLKLKRHV 594
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 25.8 bits (57), Expect = 8.6
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSK-----IEDAAKKRDEKENEFIEQTKET 101
+ ++ E +K+ +R+ A+K + R+ + K ++E +E K
Sbjct: 346 KVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLE 405
Query: 102 LEKRLEISSEKR 113
KRLE +KR
Sbjct: 406 ELKRLENGKQKR 417
>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional.
Length = 417
Score = 25.9 bits (57), Expect = 8.6
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 77 RSKIEDAAKKRD---EKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
R KI+D + K++ EK +++E+ KE R+E E +++ D +EK K+
Sbjct: 131 RIKIKDLSLKKELDFEKIEDYLEKNKE----RIEKLEENSLSILKDYIEKYKN 179
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 25.8 bits (57), Expect = 9.3
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEI 108
+S+E+ K+A I N ++ K + KK K+ + + T + + R++
Sbjct: 235 DSLEDMYKKAHA--------AIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKA 286
Query: 109 SSEKREALINDKME 122
+R + K++
Sbjct: 287 KKAQRRERLQKKIK 300
>gnl|CDD|99875 cd06064, H2MP_F420-Reduc, Endopeptidases belonging to F420-reducing
hydrogenases group. These hydrogenases from methanogens
are encoded by the fru, frc, or frh genes. Sequence
comparison indicates that fruD and frcD gene products
from Methanococcus voltae are similar to HycI protease
of Escherichia coli and are putatively involved in the
C-terminal processing of large subunits (FruA and FrcA
respectively). FrhD (F420 reducing hydrogenase delta
subunit) enzyme belongs to the gene cluster of
8-hydroxy-5-deazaflavin (F420) reducing hydrogenase
(FRH) from the thermophilic methanogen Methanobacterium
thermoautotrophicum delta H. FrhD subunit is putatively
involved in the processing of the coenzyme F420
hydrogenase-processing. It is similar to those frhD
genes found in Methanomicrobia and Methanobacteria. It
is different from the FrhD conserved domain found in
methyl viologen-reducing hydrogenase and
F420-non-reducing hydrogenase iron-sulfur subunit D.
Length = 150
Score = 25.3 bits (56), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 5 FPATEIRCEEKSKGGIKYDVILAEPAGTPPP 35
+P + E K K GI+ VI +P P P
Sbjct: 95 WPLADPLHELKDKYGIEIVVIGCQPKRVPEP 125
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 25.7 bits (56), Expect = 9.9
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 52 EEKLKQAEERRLSLEAEKIAKNAARR------------SKIEDAAKKRDEKENEFIEQT- 98
E K+ E +R +E E+ A A +++ + + ENE E
Sbjct: 76 ELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEE 135
Query: 99 -KETLEKRLEISSEKREALINDKMEKLKDHVSV 130
+ L+ +L+ S K + D++++ K+ +S
Sbjct: 136 EAKLLKDKLDAESLKLQNEKEDQLKEAKESISR 168
>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism].
Length = 304
Score = 25.7 bits (57), Expect = 10.0
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 60 ERRLSLEAEKIAKNAA---RRSKIEDAAKKRDEKENEFIEQTKETLEK 104
SLE + N R K+ RDEK+ + +++ KE +EK
Sbjct: 247 GSERSLEVHILDFNGDLYGERVKVRFLKFIRDEKKFDSLDELKEQIEK 294
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.127 0.327
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,687,479
Number of extensions: 619569
Number of successful extensions: 2176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1876
Number of HSP's successfully gapped: 615
Length of query: 133
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 47
Effective length of database: 7,123,158
Effective search space: 334788426
Effective search space used: 334788426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (24.1 bits)