RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9760
(133 letters)
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 70.5 bits (172), Expect = 9e-17
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 9 EIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRS-ESIEEKLKQAEERRLSLEA 67
E+ K+ G ++VIL P+ P A+ S E I++KL+ AEERR EA
Sbjct: 5 EVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEA 64
Query: 68 EKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDH 127
E + A +R + +K E+ N FI+ KE L +++E + E REA + +E+L++
Sbjct: 65 ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEK 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-05
Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 47/166 (28%)
Query: 6 PA---TEIRCEE--KSKGGIKYDVILA-----E------PAGTPPPLKTAADTPVILRSE 49
PA E E KSKG I D A E A +++ + V R
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV-MSIESLVEV-VFYRGM 1791
Query: 50 SIEEKLKQAEERRLSLEAEKIAKNAARRSK------IEDAAKKRDEKENEFIE------- 96
+++ + + E R + IA N R + ++ ++ ++ +E
Sbjct: 1792 TMQVAVPRDELGRSNYGM--IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 97 --Q-----TK---ETLEKRLEISSEKREALINDK----MEKLKDHV 128
Q +T+ L ++ +I + +E+++ H+
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 27.3 bits (60), Expect = 1.8
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 3 FLFPATEIRCEEKSKGGIKYDVI-LAEPA-GTPPPLKTAADTPVILR--SESIEEKLKQA 58
L PA+++ ++ K + ++ + P T +D LR S SI E++
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQIPVYDT----FDGSD----LRVLSGSISERIVDC 482
>4f6r_C Stathmin-like domain R1; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, subtilisin, tubulin;
HET: GTP GDP MES; 2.64A {Artificial gene}
Length = 87
Score = 37.3 bits (86), Expect = 1e-04
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 9 EIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRS-ESIEEKLKQAEERRLSLEA 67
E+ K+ G ++VIL P+ P A+ S E I++KL+ AEERR + A
Sbjct: 4 EVIELNKATSGQSWEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKAHFA 63
Query: 68 EKIAKNAARRSKIEDAAKKRDEKE 91
+ + + E+ K ++ KE
Sbjct: 64 AMLERLQEKDKHAEEVRKNKELKE 87
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.2 bits (88), Expect = 2e-04
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 46 LRSESIEEKLKQ-AEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEK 104
L E E +++ EE+R L+ E A + + + AKK E E+ ++ E +EK
Sbjct: 80 LTQEP--ESIRKWREEQRKRLQ-ELDAASKVMEQEWREKAKKDLE---EWNQRQSEQVEK 133
Query: 105 RLEISSEKREALINDKMEKL 124
+ +A +
Sbjct: 134 NKINNRIADKAFYQQPDADI 153
Score = 27.4 bits (60), Expect = 1.4
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 80 IEDAAKKRDEKEN--EFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
I A + E E+ ++ E+ ++ L++ S + + L++
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
Score = 25.9 bits (56), Expect = 4.3
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 83 AAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHV 128
A R +E E I + +E KRL+ + + + EK K +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL 120
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.8 bits (88), Expect = 5e-04
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 44 VILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE 103
++ + + E ++L +EA + + +E+ + K +E ++ K LE
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 104 KRLEISSEKREALINDKMEKLKDHVS 129
K E + + EKL+ V
Sbjct: 950 KM-----NNLEITYSTETEKLRSDVE 970
Score = 35.9 bits (83), Expect = 0.002
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRL 106
+ + ++ K E+ +LE + RS +E +E +N +L++ +
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNA--TNRVLSLQEEI 993
Query: 107 EISSEKREALINDKMEKLKDH 127
++ +K +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWA 1014
Score = 32.8 bits (75), Expect = 0.022
Identities = 15/78 (19%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 52 EEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSE 111
+ +A +AK ++ KIE + +R +K + +E L+++++ ++
Sbjct: 883 YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942
Query: 112 KREALINDKMEKLKDHVS 129
+ ++L +KM L+ S
Sbjct: 943 EYKSL-LEKMNNLEITYS 959
Score = 32.4 bits (74), Expect = 0.030
Identities = 8/83 (9%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRL 106
+E K+ Q + + E + + + + ++ ++ + E+
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSD--VERLRMSEEEA 979
Query: 107 EISSEKREALINDKMEKLKDHVS 129
+ ++ + +L +++ KL+ +
Sbjct: 980 KNATNRVLSL-QEEIAKLRKELH 1001
Score = 31.2 bits (71), Expect = 0.073
Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDE--KENEFIEQTKETLEK 104
R S++E++ + + + EK + + E ++N ++ KE L +
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Query: 105 RLEISSEKREALINDKMEK 123
R+ +++ + K+ +
Sbjct: 1045 RIHDQAKEITETMEKKLVE 1063
Score = 30.5 bits (69), Expect = 0.13
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRD--EKENEFIEQTKETLE 103
+ ++ +KLK + I +KI +K D KE + + + LE
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGL----ENKIMQLQRKIDEQNKEYKSLLEKMNNLE 955
Query: 104 KRLEISSEKREALINDKMEKLKD 126
+EK + + ++
Sbjct: 956 ITYSTETEKLRSDVERLRMSEEE 978
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.2 bits (81), Expect = 0.004
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 47 RSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDE-----KENEFIEQTKET 101
+ +EE+L++ E R L+ EK+ + + +D D+ KE + +E+
Sbjct: 956 QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Query: 102 LEKRLEISSEKREAL--INDKMEKLKD 126
L L EK + L + +K E +
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Score = 31.7 bits (72), Expect = 0.059
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 49 ESIEEKLKQAEERRLSLEA-----EKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE 103
++ E +AEE R+ L A E+I R + E+ ++ + E + ++Q LE
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 104 KRLEISSEKREALINDKMEK 123
++LE R+ L +K+
Sbjct: 962 EQLEEEEAARQKLQLEKVTA 981
Score = 28.6 bits (64), Expect = 0.70
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 49 ESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRD-----EKENEFIEQTKETLE 103
+ +E+ + E++ L E+ + A++ + K E LE
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 104 KRLEISSEKREALINDKME 122
RL+ + R+ L K +
Sbjct: 1046 VRLKKEEKSRQELEKIKRK 1064
Score = 26.3 bits (58), Expect = 4.3
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKR 105
+ +E ++ + E E + + E AA+ + EK+ + + E L+
Sbjct: 1100 ALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Query: 106 LEISSEKREALI--NDKMEKLKD 126
LE + + K D
Sbjct: 1160 LEDTLDTTATQQELRGSDYKDDD 1182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.3 bits (75), Expect = 0.018
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 19/96 (19%)
Query: 45 ILRSESIEEKLKQAEE----RRL--SLEAEKIAKNAARRSKIEDAAKKRDEKENEFI--- 95
IL E I+ + + RL +L +++ + ++ +E+ +F+
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EEMVQKF-VEEV----LRINYKFLMSP 97
Query: 96 --EQTKETLEKRLEISSEKREALINDKMEKLKDHVS 129
+ ++ + E+R+ L ND K +VS
Sbjct: 98 IKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNVS 132
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 30.4 bits (68), Expect = 0.13
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 66 EAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETL 102
AE + R K+R +K N FI++ +
Sbjct: 3 YAEHQGRIKNAREAHSQIEKRRRDKMNSFIDELASLV 39
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 29.9 bits (68), Expect = 0.26
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKR 105
LRS + LK+ E++ + EK A + + E AA RD E EQ ++T +
Sbjct: 387 LRSFTTPPNLKELEQKLDEVRKEK--DAAVQSQEFEKAASLRDT-EQRLREQVEDTKKSW 443
Query: 106 LEISSEKRE 114
E ++
Sbjct: 444 KEKQGQENS 452
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 29.5 bits (66), Expect = 0.27
Identities = 14/91 (15%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 29 PAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRD 88
P +TP ++++ + + + L+ E E + + +S + +D
Sbjct: 12 SGLVPRGSHMPKETPSKAAADALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLSKD 71
Query: 89 EKENEFIEQTKETLEKRLEISSEKREALIND 119
+ ++ ++ + +L+ EK E L+N+
Sbjct: 72 AENHKAYLKSHQVHRHKLK-EMEKEEPLLNE 101
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 29.5 bits (67), Expect = 0.27
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 66 EAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEI 108
EAE I K+ +R +I + EK +++ + ++ L +
Sbjct: 188 EAETIKKDFSRHREIMRVVRPVIEKMALIVKEVIKNYDQTLPV 230
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.1 bits (66), Expect = 0.39
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKR 105
LRS + LK+ E++ + EK A A + + E AA RD ++ + + E +K
Sbjct: 387 LRSFTTPPNLKELEQKLDEVRKEKDA--AVQSQEFEKAASLRDTEQR--LREQVEDTKKS 442
Query: 106 LEISSEKREALIND 119
+ + + +
Sbjct: 443 WKEKQGQENSEVTV 456
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.53
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 89 EKENEFIEQTKETLEKRLEI-SSEKREAL-INDKME 122
EK+ K+ L+ L++ + + AL I ME
Sbjct: 18 EKQ-----ALKK-LQASLKLYADDSAPALAIKATME 47
Score = 26.1 bits (56), Expect = 2.9
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 53 EK--LKQAEERRLSLEAEKIAKNAARRSKIE 81
EK LK+ + L L A+ A A ++ +E
Sbjct: 18 EKQALKKLQAS-LKLYADDSAPALAIKATME 47
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.0 bits (61), Expect = 0.91
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 28 EPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKR 87
+ A P A L E E +++ E + E A + + + AKK
Sbjct: 77 QEANGPADGYAAIAQADRLTQEP--ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKD 134
Query: 88 DEKENEFIEQTKETLEKRLEISSEKREALINDK 120
E E+ ++ E +EK + +A
Sbjct: 135 LE---EWNQRQSEQVEKNKINNRIADKAFYQQP 164
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap
binding site, hydrolase-DNA complex, DNA repair,
replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A*
3q8m_A*
Length = 341
Score = 27.9 bits (62), Expect = 1.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 31 GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSK 79
G PP LK+ R E++L+QA+ E EK K + +K
Sbjct: 86 GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTK 134
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 27.8 bits (62), Expect = 1.1
Identities = 10/111 (9%), Positives = 27/111 (24%)
Query: 20 IKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSK 79
+ Y + A + +++S E + S K
Sbjct: 70 VNYLLQKASSKAGAKEKQNTDSQKEKKQNKSKEALADAKDPLDESSNGIKNLSLNKNDEP 129
Query: 80 IEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKDHVSV 130
+ K + + E + + + ++ + K V +
Sbjct: 130 AFQTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVHL 180
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 27.0 bits (60), Expect = 2.0
Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 46 LRSESIEEKLKQAEERRLSLEAEKIAKNAARRSKIED---AAKKRDEKENEFIEQTKE-- 100
+E I + +++ ++ + R S + +++ +
Sbjct: 127 FSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLR 186
Query: 101 ----TLEKRLEISSEKREALI 117
LE + + +K EAL+
Sbjct: 187 NELQKLEDDAKDNQQKLEALL 207
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein;
HET: CIT; 1.92A {Bordetella pertussis}
Length = 301
Score = 26.4 bits (59), Expect = 3.0
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 25 ILAEPAGTPPPL--KTAADTPVILRSESIEEKLKQ 57
+L P TP + K +++ + +++KL
Sbjct: 232 LLV-PGATPMAVRQKLYDGIAKVMQRDDVQKKLAD 265
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A
{Bordetella pertussis tohama I}
Length = 312
Score = 26.4 bits (59), Expect = 3.1
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 29 PAGTPPPL--KTAADTPVILRSESIEEKLKQ 57
P GTP P+ K L +E++KQ
Sbjct: 244 PKGTPKPVVDKLVKSLQAGLADPKFQERMKQ 274
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 26.6 bits (59), Expect = 3.3
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 52 EEKLKQAEERRLSLEAE 68
L AEERR +
Sbjct: 677 LANLINAEERRDVSLKD 693
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 26.3 bits (58), Expect = 3.7
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 22 YDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARR 77
I L + + + + LK+AE+R LSL +++++ AR
Sbjct: 182 LRQITGNYYPELAALNV--ENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLARE 235
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins,
carboxylate binding, glutamate, transport protein; HET:
GLU; 2.30A {Bordetella pertussis}
Length = 314
Score = 26.0 bits (58), Expect = 4.5
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 25 ILAEPAGTPPPL--KTAADTPVILRSESIEEKLKQ 57
+LA P GTP + K V L+ + + L
Sbjct: 245 LLA-PKGTPMDVVNKLRDAAVVALKDPKVIKALDD 278
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 25.7 bits (57), Expect = 5.5
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 55 LKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE--KRLEISS-E 111
++ A+++ L LE + + +E AAKK + + + +E L K++ +
Sbjct: 841 IECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMS 900
Query: 112 KREALINDKMEKLKDHV 128
+ K+++LK V
Sbjct: 901 EENIT--IKLKQLKAEV 915
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 25.6 bits (56), Expect = 6.4
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 31 GTPPPLKTAADTPVILRSESIEEKLKQAEERRLSLEAEKIAKNAARRSK 79
G PP LK+ R E++L+QA+ E EK K + +K
Sbjct: 86 GKPPQLKSGELAKRSERRAEAEKQLQQAQAAGAEQEVEKFTKRLVKVTK 134
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 25.3 bits (56), Expect = 7.1
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 71 AKNAARRSKIEDAAKKRDEKEN-EFIEQTKETLEKRLEISSEKREALINDKMEKLK 125
A R + + + + + ++ L E R ++++ L
Sbjct: 145 ASPEELRLESSKHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILD 200
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 25.5 bits (55), Expect = 7.4
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 49 ESIEEKLKQAEERRLSLEAE-KIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLE 107
+ E +AE R+ E AK A+ IE A+ K+ +E + LE
Sbjct: 721 NAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE 780
Query: 108 ISSEKREALI 117
+S ++ A +
Sbjct: 781 VSKAQQLANV 790
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.127 0.327
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,902,677
Number of extensions: 108270
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 178
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.2 bits)