RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9760
         (133 letters)



>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 46.8 bits (111), Expect = 3e-08
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 8   TEIRCEEKSKGGIKYDVILAEPAG-TPPPLKTAADTPVILRSESIEEKLKQAEERRLSLE 66
            E+    K   G  ++VIL  P+    P    +         E I++KL+ AEERR   E
Sbjct: 3   MEVIELNKCTSGQSFEVILKPPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQE 62

Query: 67  AEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLEKRLEISSEKREALINDKMEKLKD 126
           AE +   A +R    +  +K  E+ N FI+  KE L +++E + E REA +   +E+L++
Sbjct: 63  AELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQE 122

Query: 127 H 127
            
Sbjct: 123 K 123


>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
           {Lactobacillus casei [TaxId: 1582]}
          Length = 176

 Score = 26.0 bits (57), Expect = 1.2
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 4   LFPATEIRCEEKSKGGIKYDVILAEPAGTPPPLKTAADTPVILRSESIEEKLKQAEERRL 63
           LF A  +R +      +   +    P  T   L +   T +I      +  +     R L
Sbjct: 82  LFGAGAVREDTTISLIV--HLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNL 139

Query: 64  SLEAEKIAKNAARRSKIEDAAKKRDEKENEFIEQTKE 100
           ++  E  A N   +S   DA K  ++  N  IE  +E
Sbjct: 140 AIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEE 176


>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast
           (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}
          Length = 458

 Score = 26.1 bits (57), Expect = 1.8
 Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 53  EKLKQAEERRLSLEAEKIAKNAARRSKIEDAAKKRD--EKENEFIEQTKETLE 103
            K+    +   S    ++A    +    +DA   +   +K++  +  T  + +
Sbjct: 13  SKINSWNKEFQSDLTHQLATTVLKNYNADDALLNKTRLQKQDNRVFNTVVSTD 65


>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human
           papillomavirus type 18 [TaxId: 333761]}
          Length = 194

 Score = 25.4 bits (56), Expect = 2.3
 Identities = 7/35 (20%), Positives = 15/35 (42%)

Query: 95  IEQTKETLEKRLEISSEKREALINDKMEKLKDHVS 129
           ++  KETL +RL    +K      +  + +   + 
Sbjct: 2   MQTPKETLSERLSALQDKIIDHYENDSKDIDSQIQ 36


>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium
           symbiosum [TaxId: 1512]}
          Length = 194

 Score = 23.7 bits (51), Expect = 7.6
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 82  DAAKKRDEKENEFIEQTKETLE 103
              +K+   E EF++  +E L 
Sbjct: 9   AEVEKKYADEPEFVQTVEEVLS 30


>d1bwva1 c.1.14.1 (A:150-478) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
          Length = 328

 Score = 24.0 bits (52), Expect = 7.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 25  ILAEPAGTPPPLKTAADT 42
           IL E A T   L+TA D 
Sbjct: 294 ILREAAKTCGALRTALDL 311


>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
           faecalis (Streptococcus faecalis) [TaxId: 1351]}
          Length = 353

 Score = 23.8 bits (51), Expect = 9.2
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 49  ESIEEKLKQAEERRLSLEA-EKIAKNAARRSKIEDAAKKRDEKENEFIEQTKETLE 103
             I+   +  E+  L+L   E +A        I DA K   ++ + +I+  ++TL 
Sbjct: 45  AEIQALKQSVEQEGLALLGIESVA--------IHDAIKAGTDQRDHYIDNYRQTLR 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.127    0.327 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 446,118
Number of extensions: 19377
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 50
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (22.6 bits)