BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9761
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P8C|F Chain F, Structure And Control Of The Actin Regulatory Wave Complex
Length = 159
Score = 191 bits (484), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 94/154 (61%), Positives = 114/154 (74%), Gaps = 13/154 (8%)
Query: 1 MAELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLAS 60
MAEL LL EIP GR +L DS++NLE+VA+YCE NY Q+ +K+ ALEETK YTTQSLAS
Sbjct: 2 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLAS 61
Query: 61 VAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ-------------IGVLTANKTTNR 107
VAY INTLA N LQ+LD+Q +QL MES +NHI Q IG+LT NK T+R
Sbjct: 62 VAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 121
Query: 108 QYKIIAPANPEKPIKYVRKPIDLNALDDIGHGVR 141
+KIIAPAN E+P++Y+RKPID LDDIGHGV+
Sbjct: 122 THKIIAPANLERPVRYIRKPIDYTILDDIGHGVK 155
>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2
(Abelson Interactor 2)
Length = 78
Score = 84.7 bits (208), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/62 (62%), Positives = 47/62 (75%), Gaps = 12/62 (19%)
Query: 368 PGWVPKNYIEK------------DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNY 415
P W P++Y+EK DELSFQE A+IYV+KKNDDGW+EGVM+G+TGLFPGNY
Sbjct: 9 PPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNY 68
Query: 416 VE 417
VE
Sbjct: 69 VE 70
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+DELSF + +I V+ K+D WW+G ++G+TGLFP NYV+
Sbjct: 32 EDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 71
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+DELSF + +I V+ K+D WW+G ++G+TGLFP NYV+
Sbjct: 48 EDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVK 87
>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From
Alpha- Pak
Length = 65
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 28/39 (71%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+DELSF + VI+V + + GWWEG ++G TG FP NYV
Sbjct: 22 EDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYV 60
>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2DF6|B Chain B, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
pdb|2P4R|A Chain A, Structural Basis For A Novel Interaction Between Aip4 And
Beta-pix
pdb|2G6F|X Chain X, Crystal Structure Of The Sh3 Domain Of Betapix In Complex
With A High Affinity Peptide From Pak2
Length = 59
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+DELSF + VI+V + + GWWEG +G TG FP NYV
Sbjct: 18 EDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56
>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
pdb|2ESW|B Chain B, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse
Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange
Factor
Length = 61
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+DELSF + VI+V + + GWWEG +G TG FP NYV
Sbjct: 20 EDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|3ULR|B Chain B, Lysozyme Contamination Facilitates Crystallization Of A
Hetero- Trimericcortactin:arg:lysozyme Complex
Length = 65
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DE+SF +I ++ DDGWW GV G GLFP NYVE
Sbjct: 24 DEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
pdb|2AK5|B Chain B, Beta Pix-Sh3 Complexed With A Cbl-B Peptide
Length = 64
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+DELSF + VI+V + + GWWEG +G TG FP NYV
Sbjct: 20 EDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58
>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE
Nucleotide Exchange Factor(Gef) 6
Length = 76
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+DELS + +IYV + + GWWEG ++G TG FP NYV
Sbjct: 24 EDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62
>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck
Length = 61
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 366 DLPGWVPKNYI--EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
++P +V NY+ +DELS + + V++K DGWW G +G G FP NYV
Sbjct: 4 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 56
>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|B Chain B, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|C Chain C, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
pdb|2D1X|D Chain D, The Crystal Structure Of The Cortactin-Sh3 Domain And
Amap1- Peptide Complex
Length = 66
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DE+SF +I ++ DDGWW GV G GLFP NYVE
Sbjct: 25 DEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 63
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DEL+F + +I VL K D WW+G + G GLFP NYV+
Sbjct: 17 DELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVK 55
>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src
Substrate Cortactin
Length = 79
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DE+SF +I ++ DDGWW GV G GLFP NYVE
Sbjct: 32 DEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 70
>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase
Binding Protein 1
Length = 68
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 370 WVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
++P+N DEL + +I V+ + ++GWWEGV++G TG+FP N+++
Sbjct: 16 YLPQN---DDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 60
>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human
Cytoplasmic Protein Nck1
Length = 88
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 364 DQDLPGWVPKNYI--EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
D ++P +V NY+ +DELS + + V++K DGWW G +G G FP NYV
Sbjct: 15 DLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYV 69
>pdb|2O2O|A Chain A, Solution Structure Of Domain B From Human Cin85 Protein
Length = 92
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 34/48 (70%), Gaps = 3/48 (6%)
Query: 370 WVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
++P+N DEL + +I V+ + ++GWWEGV++G TG+FP N+++
Sbjct: 27 YLPQN---DDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 71
>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Adaptor Protein Nck2
Length = 57
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 367 LPGWVPKNYI--EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+P +V Y+ +DELS + + + V++K DGWW G +G G FP NYV
Sbjct: 1 IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52
>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE
Length = 58
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+E+DEL F+ V+ VL ++ WW G + GLFP NYV P
Sbjct: 13 LEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55
>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An
Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal
Sh3 Domain
Length = 60
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+E+DEL F+ V+ VL ++ WW G + GLFP NYV P
Sbjct: 15 LEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57
>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor
Length = 58
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
DEL F+E +IY+ +D WW+G G TGL P NYV
Sbjct: 18 DELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55
>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN
pdb|1OEB|B Chain B, MonaGADS SH3C DOMAIN
pdb|2W10|A Chain A, Mona Sh3c In Complex
pdb|2W10|B Chain B, Mona Sh3c In Complex
Length = 62
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+E+DEL F+ V+ VL ++ WW G + GLFP NYV P
Sbjct: 17 LEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59
>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
pdb|2D0N|C Chain C, Crystal Structure Of The C-Terminal Sh3 Domain Of The
Adaptor Protein Gads In Complex With Slp-76 Motif
Peptide Reveals A Unique Sh3-Sh3 Interaction
Length = 59
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+E+DEL F+ V+ VL ++ WW G + GLFP NYV P
Sbjct: 14 LEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56
>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain
(Minimized Average Structure)
pdb|1KFZ|A Chain A, Solution Structure Of C-Terminal Sem-5 Sh3 Domain
(Ensemble Of 16 Structures)
Length = 62
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL+F+ VI ++ K+D WWEG ++ G+FP NYV P
Sbjct: 17 ESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAP 58
>pdb|2XMF|A Chain A, Myosin 1e Sh3
Length = 60
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+ DELSF + +I ++K++ GWW G + G GLFP NYV
Sbjct: 18 DTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57
>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast
Stimulating Factor 1 (Ostf1)
Length = 68
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
DEL F+E +IY+ +D WW+G G TGL P NYV
Sbjct: 22 DELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 59
>pdb|2VVK|A Chain A, Grb2 Sh3c (1)
Length = 56
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL F+ I+V+ +D WW+G G TG+FP NYV P
Sbjct: 13 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 54
>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
pdb|2BZ8|B Chain B, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide
Length = 58
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
DEL+ +I ++K D GWWEG ++G GLFP N+V
Sbjct: 16 DELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53
>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal
Sh3 Domain Complexed With A Ligand Peptide (Nmr,
Minimized Mean Structure)
pdb|1GFC|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
pdb|1GFD|A Chain A, Solution Structure And Ligand-Binding Site Of The C-
Terminal Sh3 Domain Of Grb2
Length = 59
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL F+ I+V+ +D WW+G G TG+FP NYV P
Sbjct: 15 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation And
Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL+F+ VI ++ K+D WWEG ++ G+FP NYV P
Sbjct: 15 ESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP 56
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL+F+ VI ++ K+D WWEG ++ G+FP NYV P
Sbjct: 15 ESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP 56
>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains
pdb|1GCQ|B Chain B, Crystal Structure Of Vav And Grb2 Sh3 Domains
Length = 61
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL F+ I+V+ +D WW+G G TG+FP NYV P
Sbjct: 15 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E EL F+ I+V+ +D WW+G G TG+FP NYV P
Sbjct: 171 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV 213
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 379 DELSFQESAVIYVLKKN-DDGWWEGVMDGITGLFPGNYVE 417
DELSF+ ++ VL + D W++ ++G G P NY+E
Sbjct: 15 DELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54
>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|B Chain B, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|C Chain C, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
pdb|2DRM|D Chain D, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 58
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DEL+F+E I V +K+ GWWEG ++G G P NYV+
Sbjct: 18 DELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 56
>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125
Length = 59
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DEL+F+E I V +K+ GWWEG ++G G P NYV+
Sbjct: 19 DELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ 57
>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Kiaa0769 Protein
Length = 73
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 379 DELSFQESAVIYVLKK---NDDGWWEGVMDGITGLFPGNYVE 417
DELSF E A+I +L K +DDG+WEG +G G+FP VE
Sbjct: 23 DELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVE 64
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
DEL +E +IY+ +D WW+G G TGL P NYV
Sbjct: 29 DELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66
>pdb|1Y0M|A Chain A, Crystal Structure Of Of The Sh3 Domain Of Phospholipase C
Gamma-1
Length = 61
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGL-FPGNYVEPCV 420
+DEL+F +SA+I ++K D GWW G G L FP NYVE +
Sbjct: 17 EDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein At 1.39 A Resolution
pdb|1SSH|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae
Hypothetical 40.4 Kda Protein In Complex With A Peptide
Length = 60
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKND--DGWWEGVMDGITGLFPGNYVE 417
E +L F++ VI +LKK+D + WW G ++G G+FP NYVE
Sbjct: 16 ESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 58
>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A
Ubpy-Derived Peptide
Length = 62
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+E +EL+F+ +I VL +D WW+G TGLFP N+V
Sbjct: 17 VEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57
>pdb|1YWO|A Chain A, Phospholipase Cgamma1 Sh3 In Complex With A Slp-76 Motif
pdb|1YWP|A Chain A, Phospholipase Cgamma1 Sh3
Length = 64
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGL-FPGNYVEPCV 420
+DEL+F +SA+I ++K D GWW G G L FP NYVE +
Sbjct: 20 EDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 63
>pdb|2VWF|A Chain A, Grb2 Sh3c (2)
pdb|2W0Z|A Chain A, Grb2 Sh3c (3)
Length = 58
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
E EL F+ I+V+ +D WW+G G TG+FP NYV
Sbjct: 15 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54
>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap
pdb|2KRO|A Chain A, Rdc Refined High Resolution Structure Of The Third Sh3
Domain Of Cd2ap
Length = 64
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNY 415
P +DEL+F+E +I+++ K + GWW+G ++G G+FP N+
Sbjct: 14 PYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59
>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85
Length = 69
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVE 417
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 17 DELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57
>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin
Length = 62
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVE 417
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 18 DELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58
>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl
Length = 65
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 365 QDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGIT--GLFPGNYVEP 418
Q L ++P+N DEL ++ ++ V++K DDGW+ G G FPGNYV+P
Sbjct: 10 QALYSYIPQN---DDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85
Adapter Protein
Length = 73
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVE 417
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 24 DELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64
>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
pdb|4E6R|B Chain B, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2)
From Homo Sapiens At 2.20 A Resolution
Length = 58
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 367 LPGWVPKNYI--EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+P +V Y+ +DELS + + V + DGWW G +G G FP NYV
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNGQIGWFPSNYV 53
>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain
Kinase Binding Protein 1 (Regulator Of Ubiquitous
Kinase, Ruk)
Length = 70
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVE 417
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 22 DELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62
>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr
Length = 64
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 365 QDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGIT--GLFPGNYVEP 418
Q L ++P+N DEL ++ ++ V++K DDGW+ G G FPGNYV+P
Sbjct: 10 QALYSYIPQN---DDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62
>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag
(Inset) Using A Sortase-Mediated Protein Ligation Method
Length = 142
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVL-KKNDDGWWEGVMDGITGLFPGNYVE 417
++ ELS +E +I +L KK GWW G + G G FP NYVE
Sbjct: 18 DRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVE 59
>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|3IQL|B Chain B, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
pdb|2KNB|B Chain B, Solution Nmr Structure Of The Parkin Ubl Domain In Complex
With The Endophilin-A1 Sh3 Domain
Length = 71
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
EL F+E +I + + D+ W+EG++ G +G FP NYVE
Sbjct: 27 ELGFKEGDIITLTNQIDENWYEGMLHGQSGFFPINYVE 64
>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3
Length = 68
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
P+N + EL F+E +I + + D+ W+EG++ G +G FP NYVE V
Sbjct: 14 PEN---QGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIV 59
>pdb|1HSQ|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
pdb|2HSP|A Chain A, Solution Structure Of The Sh3 Domain Of Phospholipase
Cgamma
Length = 71
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGL-FPGNYVEPCV 420
+DEL+F +SA+I ++K + GWW G G L FP NYVE V
Sbjct: 20 EDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63
>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|B Chain B, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|C Chain C, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
pdb|4GLM|D Chain D, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo
Sapiens]
Length = 72
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
+E +EL F+ I +L +DGW EG + G TG+FP +V+ C
Sbjct: 25 LEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLC 68
>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3-
Containing Grb2-Like Protein 2
Length = 73
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
EL F+E +I + + D+ W+EG++ G +G FP NYVE
Sbjct: 23 ELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms
Protein
Length = 65
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 370 WVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
++P+N +DEL + +I + ++ ++GWW G ++ GLFP N+V+
Sbjct: 10 YIPQN---EDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 54
>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain
pdb|2A08|B Chain B, Structure Of The Yeast Yhh6 Sh3 Domain
Length = 60
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 380 ELSFQESAVIYVLKKND--DGWWEGVMDGITGLFPGNYV 416
+L+F++ VI +LKK+D + WW G +G G+FP NYV
Sbjct: 19 DLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57
>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin And Its Interaction With The Peptides From
Vinculin
Length = 65
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
EL+ Q+ ++Y+ K+ D W EG G G+FP NYVE
Sbjct: 17 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 54
>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of
Cd2ap
Length = 60
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 370 WVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+ P+N +DEL VI V+++ ++GWW G ++ GLFP N+V+
Sbjct: 13 YSPQN---EDELELIVGDVIDVIEEVEEGWWSGTLNNKLGLFPSNFVK 57
>pdb|2DMO|A Chain A, Refined Solution Structure Of The 1st Sh3 Domain From
Human Neutrophil Cytosol Factor 2 (Ncf-2)
Length = 68
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 367 LPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
L G+VP+ K+EL +++VLKK +D W + +G GL P NY+EP
Sbjct: 13 LFGFVPET---KEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61
>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal
Transducing Adaptor Molecule 2
Length = 88
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+E +EL+F+ +I VL +D WW+G GLFP N+V
Sbjct: 29 VEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFV 69
>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin
Length = 79
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+ DEL+ ++ ++ + +K ++GWW G ++G G FP YVE
Sbjct: 20 QDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVE 60
>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter
Molecule 1 Stam-1 From Homo Sapiens, Northeast
Structural Genomics Consortium Target Hr4479e
Length = 72
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
E +EL+F+ +I VL +D WW+G GLFP N+V
Sbjct: 30 EDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69
>pdb|2A36|A Chain A, Solution Structure Of The N-Terminal Sh3 Domain Of Drk
pdb|2AZS|A Chain A, Nmr Structure Of The N-Terminal Sh3 Domain Of Drk
(Calculated Without Noe Restraints)
Length = 59
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 379 DELSFQESAVIYVLKKNDDG-WWEGVMDGITGLFPGNYVE 417
DELSF+++ ++ +L DD W+ +DG GL P NY+E
Sbjct: 15 DELSFRKTQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain
From Human Cd2ap (Cms) In Complex With A Proline-Rich
Peptide From Human Rin3
Length = 65
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 370 WVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
++P+N +DEL + +I + ++ ++GWW G ++ GLFP N+V+
Sbjct: 16 YIPQN---EDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVK 60
>pdb|2DL8|A Chain A, Solution Structure Of The Sh3 Domain Of Human Slit-Robo
Rho Gtpase-Activating Protein 2
Length = 72
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
ELSF++ A + + ++ D WWEG +GI GL P Y+
Sbjct: 25 ELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYI 61
>pdb|2DLM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Vinexin
Length = 68
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
EL+ Q+ ++Y+ K+ D W EG G G+FP NYVE
Sbjct: 23 ELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVE 60
>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Drkn Sh3 Domain)
pdb|2AZV|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3
Domain Of Drk (Calculated Without Noes)
Length = 59
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 379 DELSFQESAVIYVLKKNDDG-WWEGVMDGITGLFPGNYVE 417
DELSF++ ++ +L DD W+ +DG GL P NY+E
Sbjct: 15 DELSFRKGQILKILNMEDDSNWYRAELDGKEGLIPSNYIE 54
>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical
Protein Sh3yl1
Length = 80
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 380 ELSFQESAVIYVLKKNDD--GWWEGVMDGITGLFPGNYV 416
+L+FQ I V+ K D WWEG + G TG+FP NYV
Sbjct: 33 DLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYV 71
>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3
Domain Of P47phox
Length = 193
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+E DE+S E + V+ K DGWW D +TG FP Y++
Sbjct: 93 VEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ V+ V++K++ GWW M G P +++EP
Sbjct: 27 EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1
Length = 60
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMD--GITGLFPGNYVEPC 419
++DE+SFQ+ I +++ DDGW G ++ G TG+ P NYVE
Sbjct: 16 DEDEVSFQDGDTIVNVQQIDDGWMYGTVERTGDTGMLPANYVEAI 60
>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox
Length = 193
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+E DE+S E + V+ K DGWW D +TG FP Y++
Sbjct: 93 VEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ V+ V++K++ GWW M G P +++EP
Sbjct: 27 EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1
Domain Containing 3
Length = 78
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+ DEL F+++ +I ++ + D+ W G ++G+ G FP +VE
Sbjct: 20 DDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVE 60
>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human
Intersectin 2(Kiaa1256)
Length = 69
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
P + +E +L+F E I V +K D WW G + +G+FP NYV+P
Sbjct: 16 PYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKP 61
>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States
By Relaxation Dispersion Nmr
Length = 62
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYV 416
E +EL+F E+ I ++ DD WW G + DG GLFP NYV
Sbjct: 17 EDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58
>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein
Abp1 Sh3 Domain
Length = 58
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYV 416
E +EL+F E+ I ++ DD WW G + DG GLFP NYV
Sbjct: 13 EDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54
>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The
Function Of Yeast Sh3 Domains
Length = 59
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYV 416
E +EL+F E+ I ++ DD WW G + DG GLFP NYV
Sbjct: 14 EDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
K EL+F+ VI++L + + W EG + G TG+FP ++V+
Sbjct: 188 KLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 227
>pdb|2GNC|A Chain A, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
pdb|2GNC|B Chain B, Crystal Structure Of Srgap1 Sh3 Domain In The Slit-Robo
Signaling Pathway
Length = 60
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
ELSF++ A + + + + WWEG +GI GL P Y+
Sbjct: 22 ELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58
>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Protein Vav-2
Length = 73
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 374 NYIEKD--ELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVE 417
N+ +D ELS +E V+ + + D GWW+G +G G FP YVE
Sbjct: 15 NFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62
>pdb|2CT3|A Chain A, Solution Structure Of The Sh3 Domain Of The Vinexin
Protein
Length = 70
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGIT--GLFPGNYVEP 418
+DEL +E + V+++ DDGW+ GV G FPGNYV P
Sbjct: 21 EDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+E DE+S E + V+ K DGWW D +TG FP Y++
Sbjct: 92 VEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 133
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E++ V+ V++K++ GWW M G P +++EP
Sbjct: 26 EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 64
>pdb|2DL3|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Sorbin
And Sh3 Domain-Containing Protein 1
Length = 68
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
EL Q+ ++Y+ K+ D W+EG G G+FP Y+E
Sbjct: 23 ELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIE 60
>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex
pdb|1OV3|B Chain B, Structure Of The P22phox-P47phox Complex
Length = 138
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+E DE+S E + V+ K DGWW D +TG FP Y++
Sbjct: 93 VEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 134
Score = 32.3 bits (72), Expect = 0.49, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E++ V+ V++K++ GWW M G P +++EP
Sbjct: 27 EMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 65
>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox
Complexed With The C-Terminal Tail Region Of P47phox
Length = 62
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+ ++L FQE +I VL K ++ W EG G G+FP +VE
Sbjct: 18 QPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVE 58
>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W6X|B Chain B, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase
pdb|1W70|A Chain A, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
pdb|1W70|B Chain B, Sh3 Domain Of P40phox Complexed With C-Terminal
Polyproline Region Of P47phox
Length = 60
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
K EL+F+ VI++L + + W EG + G TG+FP ++V+
Sbjct: 18 KLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 57
>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox
Length = 79
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
K EL+F+ VI++L + + W EG + G TG+FP ++V+
Sbjct: 32 KLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVK 71
>pdb|2LX7|A Chain A, Solution Nmr Structure Of Sh3 Domain Of Growth
Arrest-Specific Protein 7 (Gas7) (Fragment 1-60) From
Homo Sapiens, Northeast Structural Genomics Consortium
(Nesg) Target Hr8574a
Length = 60
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 381 LSFQESAVIYVLKKNDDGWWEGVM-DGITGLFPGNYVE 417
L F +I +L+ D GWWEG DG+ G FP +YV+
Sbjct: 21 LRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQ 58
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
I +D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 27 ITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
I +D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 12 ITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56
>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of
Cd2ap
Length = 57
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 376 IEKDELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVE 417
+ DEL+ + +I +KK ++GW EG ++G G+FP N+V+
Sbjct: 12 VHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 54
>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound
To Cbl-B Peptide
pdb|2J6K|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|B Chain B, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|C Chain C, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|D Chain D, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|E Chain E, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|F Chain F, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|G Chain G, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|H Chain H, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|I Chain I, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|J Chain J, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|K Chain K, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6K|L Chain L, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)
pdb|2J6O|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterotrimer
pdb|2J7I|A Chain A, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
pdb|2J7I|B Chain B, Atypical Polyproline Recognition By The Cms N-Terminal Sh3
Domain. Cms:cd2 Heterodimer
Length = 62
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 376 IEKDELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVE 417
+ DEL+ + +I +KK ++GW EG ++G G+FP N+V+
Sbjct: 13 VHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVK 55
>pdb|2CUC|A Chain A, Solution Structure Of The Sh3 Domain Of The Mouse
Hypothetical Protein Sh3rf2
Length = 70
Score = 37.4 bits (85), Expect = 0.017, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+EL Q+ I VL K DGW +G ++ G TG+FP +YV P
Sbjct: 22 EELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63
>pdb|2DJQ|A Chain A, The Solution Structure Of The First Sh3 Domain Of Mouse
Sh3 Domain Containing Ring Finger 2
Length = 68
Score = 37.0 bits (84), Expect = 0.018, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 357 NGGIVPRDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+G PR + L + KN +L F + VI + ++ D+ W++G ++G++G+FP + V
Sbjct: 3 SGSSGPRAKALCNYRGKN---PGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59
Query: 417 E 417
E
Sbjct: 60 E 60
>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3
Domain
Length = 73
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
EL F+E +I + + D+ W+EG + G +G FP +YV+ V
Sbjct: 29 ELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVLV 69
>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures
pdb|1NEB|A Chain A, Sh3 Domain From Human Nebulin, Nmr, Minimized Average
Structure
Length = 60
Score = 37.0 bits (84), Expect = 0.021, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMD--GITGLFPGNYVE 417
+ DE+SF++ I ++ D+GW G + G TG+ P NYVE
Sbjct: 16 DADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVE 58
>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2)
pdb|2X3X|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 1)
pdb|2X3X|E Chain E, Structure Of Mouse Syndapin I (Crystal Form 1)
Length = 60
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDD-GWWEGVMD-GITGLFPGNYVE 417
E+DELSF+ + L + D+ GW G +D G GL+P NYVE
Sbjct: 16 EQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 36.6 bits (83), Expect = 0.028, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 15 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 36.6 bits (83), Expect = 0.030, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 379 DELSFQESAVIYVL-KKNDDGWWEGVMDGITGLFPGNYVE 417
DELSF+ ++ VL +++D W++ ++G G P NY+E
Sbjct: 15 DELSFKRGDILKVLNEESDQNWYKAELNGKDGFIPKNYIE 54
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 15 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 36.2 bits (82), Expect = 0.032, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 29 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3 Domain
Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 15 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 57
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 36.2 bits (82), Expect = 0.036, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 18 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 60
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 19 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 61
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 14 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56
>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
pdb|1WYX|B Chain B, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A
Resolution
Length = 69
Score = 36.2 bits (82), Expect = 0.039, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 379 DELSFQESAVIYVLKKND---DGWWEGVMDGITGLFPGN 414
DELSF++ ++ VL+++ DGWW + G G+ PGN
Sbjct: 18 DELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGN 56
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 17 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 59
>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex
With A Peptide Of Xirp2
Length = 64
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMD--GITGLFPGNYVE 417
++DE+SF++ I ++ DDGW G + G TG+ P NY+E
Sbjct: 19 DEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIE 61
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDD-GWWEGVMD-GITGLFPGNYVE 417
E DELSF+ + ++ D+ GW +G +D G GL+P NYVE
Sbjct: 441 EHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide P2l
Corresponding To Residues 91-104 Of The P85 Subunit Of
Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 19 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 61
>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine
Nucleotide Exchange Factor 9
Length = 81
Score = 35.8 bits (81), Expect = 0.052, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
EL+F+ VI VL ++ WW G +D G FP ++V
Sbjct: 26 ELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFV 62
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 379 DELSFQESAVIYVLKKN-DDGWWEGVMDGITGLFPGNYVE 417
DELSF+ ++ VL + D W++ ++G G P NY+E
Sbjct: 24 DELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63
>pdb|2EQI|A Chain A, Solution Structure Of The Sh3 Domain From Phospholipase C,
Gamma 2
Length = 69
Score = 35.4 bits (80), Expect = 0.068, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDG-ITGLFPGNYVE 417
DEL+F A+I+ + K GWW+G I FP NYVE
Sbjct: 22 DELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVE 61
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEPC 419
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 17 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 60
>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|B Chain B, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|C Chain C, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
pdb|2A28|D Chain D, Atomic-Resolution Crystal Structure Of The Second Sh3
Domain Of Yeast Bzz1 Determined From A
Pseudomerohedrally Twinned Crystal
Length = 54
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 379 DELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPGNY 415
DE+S +I V++ +D GW G DG+ GLFP +Y
Sbjct: 15 DEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSY 52
>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human
Olygophrein-1 Like Protein (Kiaa0621)
Length = 72
Score = 35.0 bits (79), Expect = 0.088, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 380 ELSFQESAVI-YVLKKNDDGWWEGVMDGITGLFPGNYVE 417
ELSF V V + GW EG ++G TGL P NYVE
Sbjct: 26 ELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64
>pdb|1S1N|A Chain A, Sh3 Domain Of Human Nephrocystin
Length = 68
Score = 34.7 bits (78), Expect = 0.091, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
+L+F++ ++ V++K DGWW G GL P Y+EP
Sbjct: 26 DLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEP 65
>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
pdb|4IIM|B Chain B, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound
With A Synthetic Peptide
Length = 70
Score = 34.7 bits (78), Expect = 0.099, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 350 GQPQAVRNGGIVPRDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITG 409
G Q G + + Q L W K + + L+F ++ VI VL++ D WW G + G G
Sbjct: 1 GAAQPAMAQGALLQAQALYPWRAK---KDNHLNFNKNDVITVLEQQD-MWWFGEVQGQKG 56
Query: 410 LFPGNYVE 417
FP +YV+
Sbjct: 57 WFPKSYVK 64
>pdb|2RF0|A Chain A, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|B Chain B, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|C Chain C, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
pdb|2RF0|D Chain D, Crystal Structure Of Human Mixed Lineage Kinase Map3k10
Sh3 Domain
Length = 89
Score = 34.7 bits (78), Expect = 0.10, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 379 DELSFQESAVIYVLKKN-----DDGWWEGVM-DGITGLFPGNYVEP 418
+EL+ + + VL ++ D+GWW G + G G+FP NYV P
Sbjct: 44 EELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline-
Serine-Threonine Phosphatase-Interacting Protein 1
Length = 69
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DEL ++ V+ + +DGWW +G G PG+Y+E
Sbjct: 23 DELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLE 61
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 371 VPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
VP Y +K L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 247 VPCAY-DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEPCV 420
+ ++L F++ ++ +++K ++ WW DG G+ P YVE V
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 371 VPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
VP Y +K L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 247 VPCAY-DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEPCV 420
+ ++L F++ ++ +++K ++ WW DG G+ P YVE V
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLV 182
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein
(Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus
Musculus At 1.98 A Resolution
Length = 164
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEPC 419
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 18 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV 61
>pdb|2EPD|A Chain A, Solution Structure Of Sh3 Domain In Rho-Gtpase-Activating
Protein 4
Length = 76
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
ELSF+ V+ + ++ WW G +G+ GL P Y+
Sbjct: 26 ELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYI 62
>pdb|2DNU|A Chain A, Solution Structure Of Rsgi Ruh-061, A Sh3 Domain From
Human
Length = 71
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
P KDE+ F++ + V++KN +GWW G G P +Y++
Sbjct: 16 PYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61
>pdb|2RQT|A Chain A, Solution Structure Of The Human Ddef1 Sh3 Domain
pdb|2RQU|A Chain A, Solution Structure Of The Complex Between The Ddef1 Sh3
Domain And The Apc Samp1 Motif
Length = 61
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGI---TGLFPGNYV 416
DEL+F E VI V + D WW G ++G G+FP ++V
Sbjct: 16 DELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 56
>pdb|2DBK|A Chain A, Solution Structures Of The Sh3 Domain Of Human Crk-Like
Protein
Length = 88
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 371 VPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
VP Y +K L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 26 VPCAY-DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 71
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVE 417
+L F++ + +L K + WWE G TGL P NYV+
Sbjct: 163 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 201
>pdb|2O2W|A Chain A, Extending Powder Diffraction To Proteins: Structure
Solution Of The Second Sh3 Domain From Ponsin
pdb|2O31|A Chain A, Crystal Structure Of The Second Sh3 Domain From Ponsin
pdb|2O9S|A Chain A, The Second Sh3 Domain From Ponsin
pdb|2O9V|A Chain A, The Second Sh3 Domain From Ponsin In Complex With The
Paxillin Proline Rich Region
Length = 67
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGIT--GLFPGNYVE 417
E+SF++ I +L++ D+ W+EG + G + G+FP YV+
Sbjct: 22 EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 61
>pdb|2EGA|A Chain A, Solution Structure Of The First Sh3 Domain From Human
Kiaa0418 Protein
Length = 70
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
E ELS Q V+ V++KN+ GWW G P Y+E
Sbjct: 21 ENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61
>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk
Length = 163
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEPC 419
+ ++L F++ ++ + K ++ WW MDG G+ P YVE C
Sbjct: 14 DDEDLPFKKGDILKIRDKPEEQWWNAEDMDGKRGMIPVPYVEKC 57
>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3
pdb|1ZX6|A Chain A, High-Resolution Crystal Structure Of Yeast Pin3 Sh3 Domain
Length = 58
Score = 33.9 bits (76), Expect = 0.20, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+L + + +L+K W++G +G TG+FP NYV+P
Sbjct: 18 DLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56
>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein
Length = 68
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
E ++L + +I +L+ +++ WW+G + G FP N+V+
Sbjct: 20 ENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60
>pdb|2ECZ|A Chain A, Solution Structure Of The Sh3 Domain Of Sorbin And Sh3
Domain-Containing Protein 1
Length = 70
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGIT--GLFPGNYVE 417
E+SF++ I +L++ D+ W+EG + G + G+FP YV+
Sbjct: 23 EMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVD 62
>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human
Intersectin2 (Kiaa1256)
Length = 93
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVE 417
DE+SF +I V +K + GW G G G FP NYVE
Sbjct: 20 DEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
>pdb|2YUP|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Vinexin
Length = 90
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVMDGI--TGLFPGNYVE 417
ELSF++ I +++K ++ W+EG + G G+FP +YV+
Sbjct: 33 ELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 379 DELSFQESAVIYVLKKN---DDGWWEGVMDGITGLFPGNY 415
DELSF+E + VL+++ + WW + G G P NY
Sbjct: 169 DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNY 208
>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda
Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1
Gtpase- Activating Protein
Length = 76
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGI---TGLFPGNYV 416
DEL+F E VI V + D WW G ++G G+FP ++V
Sbjct: 25 DELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65
>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
pdb|4ESR|B Chain B, Molecular And Structural Characterization Of The Sh3
Domain Of Ahi-1 In Regulation Of Cellular Resistance Of
Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine
Kinase Inhibitors
Length = 69
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYV 416
DEL+ +I V K+++ WW G + G G FP N+V
Sbjct: 21 DELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHV 59
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVE 417
+L F++ + +L K + WWE G TGL P NYV+
Sbjct: 134 DLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172
>pdb|2BZX|A Chain A, Atomic Model Of Crkl-Sh3c Monomer
pdb|2BZY|A Chain A, Dimeric Of Crkl-Sh3c Domain
pdb|2BZY|B Chain B, Dimeric Of Crkl-Sh3c Domain
Length = 67
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 371 VPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
VP Y +K L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 11 VPCAY-DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 56
>pdb|2CRE|A Chain A, Solution Structure Of Rsgi Ruh-036, An Sh3 Domain From
Human Cdna
Length = 71
Score = 32.7 bits (73), Expect = 0.38, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 379 DELSFQESAVIYVLKKN---DDGWWEGVMDGITGLFPGNYVE 417
DEL+F ++ +L+++ +GWW+ ++ G GL P N ++
Sbjct: 22 DELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQ 63
>pdb|1J3T|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 74
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 363 RDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+ Q L W K + + L+F + +I VL++ ++ WW G + G G FP +YV+
Sbjct: 12 KAQALCSWTAK---KDNHLNFSKHDIITVLEQQEN-WWFGEVHGGRGWFPKSYVK 62
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 32.7 bits (73), Expect = 0.44, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+LSF + +L + WWE + G TG P NYV P
Sbjct: 22 DLSFHKGEKFQILDGDSGDWWEARSLTTGETGYIPSNYVAP 62
>pdb|2EGC|A Chain A, Solution Structure Of The Fifth Sh3 Domain From Human
Kiaa0418 Protein
Length = 75
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGI---TGLFPGNYVE 417
+++ FQE + VL++N +GWW ++DG+ G P NY+E
Sbjct: 22 DEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLE 66
>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human
Intersectin 2 (Kiaa1256)
Length = 80
Score = 32.0 bits (71), Expect = 0.59, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDG-----ITGLFPGNYVE 417
++LS +I +LKKN GWW+G + G FP ++V+
Sbjct: 22 EQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVK 65
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 32.0 bits (71), Expect = 0.75, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
++LSF++ ++ + WWE + G G P NYV P
Sbjct: 20 EDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAP 61
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 31.6 bits (70), Expect = 0.82, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P Y+ P
Sbjct: 19 EDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAP 61
>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein
Arginine N-Methyltransferase 2
Length = 68
Score = 31.6 bits (70), Expect = 0.87, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 374 NYIEKDE--LSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+Y DE LSF I +L++ WW G G G P N+V
Sbjct: 15 DYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM NMR
RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 31.6 bits (70), Expect = 0.94, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 378 KDELSFQESAVIYVLKKNDDGWWE--GVMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P Y+ P
Sbjct: 21 EDDLSFHKGEKFQILNSSEGDWWEVRSLTTGETGYIPSPYLAP 63
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 31.2 bits (69), Expect = 1.00, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
++LSF++ ++ + WWE + G +G P NYV P
Sbjct: 42 EDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVP 83
>pdb|4AFZ|C Chain C, Human Chymase - Fynomer Complex
pdb|4AFZ|D Chain D, Human Chymase - Fynomer Complex
pdb|4AG1|C Chain C, Human Chymase - Fynomer Complex
Length = 84
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+LSF + +L+ WWE + G TG P NYV P
Sbjct: 22 DLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAP 62
>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6
Length = 72
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
+ELSF+ V +V +K + WW ++D G YV
Sbjct: 25 EELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYV 62
>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef
Length = 466
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYV 416
++ EL F+ VI V+ + WW G V DG G FP ++V
Sbjct: 42 MDDQELGFKAGDVIEVMDATNREWWWGRVADG-EGWFPASFV 82
>pdb|2EKH|A Chain A, Solution Structures Of The Sh3 Domain Of Human Kiaa0418
Length = 80
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416
++ E+SF + VL+K + GWW + G P +Y+
Sbjct: 20 VQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYL 60
>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|C Chain C, Crytal Structure Of Apc Complexed With Asef
Length = 116
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYV 416
++ EL F+ VI V+ + WW G V DG G FP ++V
Sbjct: 48 MDDQELGFKAGDVIEVMDATNREWWWGRVADG-EGWFPASFV 88
>pdb|1WIE|A Chain A, Solution Structure Of The First Sh3 Domain Of Kiaa0318
Protein
Length = 96
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 380 ELSFQESAVIYVLKKND-DGWWEG-VMDGITGLFPGNYVE 417
EL +YV D DG++EG ++DG GL P N+V+
Sbjct: 39 ELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVD 78
>pdb|2CSI|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Rim-
Binding Protein 2
Length = 76
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 380 ELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVE 417
EL+F +I V + ++DG++ G ++G GL P N++E
Sbjct: 30 ELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLE 68
>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
Africanus And Pyruvate.
pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase
pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus, Oxygen Inhibited Form
pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
From Desulfovibrio Africanus
pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
Africanus
Length = 1231
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 338 TSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPKNYIEKDELSFQ--ESAVIYVLKKN 395
SA + D G Q + G + ++P WVP+N I+ ++ +F SA++ VL K
Sbjct: 655 VSAFEADGRFPLGTSQFEKRGVAI----NVPQWVPENCIQCNQCAFVCPHSAILPVLAKE 710
Query: 396 DD 397
++
Sbjct: 711 EE 712
>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant)
Length = 62
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 374 NYIEKD--ELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+Y EK E++ ++ ++ +L + WW+ ++G G P YV+
Sbjct: 14 DYQEKSPREVTMKKGDILTLLNSTNKDWWKTEVNGRQGFVPAAYVK 59
>pdb|1VF6|A Chain A, 2.1 Angstrom Crystal Structure Of The Pals-1-L27n And Patj
L27 Heterodimer Complex
pdb|1VF6|B Chain B, 2.1 Angstrom Crystal Structure Of The Pals-1-L27n And Patj
L27 Heterodimer Complex
Length = 83
Score = 28.1 bits (61), Expect = 8.8, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 41 DNKRMALEETKNYTTQSLASVAYQ-INTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVL 99
D +M L+E + + S+ Y+ + + +N Q+L LQ + +++++ Q+NHI + G
Sbjct: 10 DRLKMKLQEKGDTSQNEKLSMFYETLKSPLFN--QILTLQQS-IKQLKGQLNHILESGKE 66
Query: 100 TANKTTNRQY 109
TA RQ+
Sbjct: 67 TAAAKFERQH 76
>pdb|1W1F|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase
pdb|1WA7|A Chain A, Sh3 Domain Of Human Lyn Tyrosine Kinase In Complex With A
Herpesviral Ligand
Length = 65
Score = 28.1 bits (61), Expect = 9.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYV 416
P + I D+LSF++ + VL+++ + WW+ ++ G P NYV
Sbjct: 15 PYDGIHPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYV 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,110,992
Number of Sequences: 62578
Number of extensions: 349659
Number of successful extensions: 987
Number of sequences better than 100.0: 175
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 191
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)