Query psy9761
Match_columns 420
No_of_seqs 307 out of 1417
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 18:54:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2546|consensus 100.0 4.4E-88 9.6E-93 677.7 29.6 391 1-420 3-479 (483)
2 PF07815 Abi_HHR: Abl-interact 99.8 8E-22 1.7E-26 159.5 3.8 75 73-155 2-78 (79)
3 PF14604 SH3_9: Variant SH3 do 99.3 2.9E-12 6.3E-17 95.2 5.1 39 379-417 11-49 (49)
4 KOG2070|consensus 99.2 2E-12 4.3E-17 133.9 1.9 52 368-419 17-72 (661)
5 KOG0162|consensus 99.2 3.9E-10 8.5E-15 121.3 14.2 52 368-419 1051-1106(1106)
6 PF07653 SH3_2: Variant SH3 do 99.1 4.7E-11 1E-15 90.1 4.4 41 379-419 14-55 (55)
7 KOG4226|consensus 99.1 1E-10 2.2E-15 114.3 3.8 57 363-419 104-162 (379)
8 smart00326 SH3 Src homology 3 98.8 3.8E-09 8.2E-14 77.4 4.9 41 379-419 17-58 (58)
9 KOG2199|consensus 98.8 7.1E-10 1.5E-14 112.9 1.2 52 368-419 215-270 (462)
10 PF00018 SH3_1: SH3 domain; I 98.8 6.7E-09 1.5E-13 76.2 4.8 35 379-413 12-48 (48)
11 KOG1029|consensus 98.8 1.6E-09 3.6E-14 117.1 1.6 50 370-419 1055-1108(1118)
12 KOG1118|consensus 98.8 2.2E-09 4.7E-14 106.4 1.8 54 367-420 305-362 (366)
13 KOG2996|consensus 98.8 4.9E-09 1.1E-13 110.9 3.8 52 367-418 804-861 (865)
14 cd00174 SH3 Src homology 3 dom 98.7 1.5E-08 3.2E-13 73.5 5.0 40 379-418 14-54 (54)
15 KOG4225|consensus 98.7 1.8E-08 3.9E-13 103.8 4.9 52 368-419 230-285 (489)
16 KOG4225|consensus 98.6 1.7E-08 3.7E-13 104.0 3.3 49 371-419 435-489 (489)
17 KOG4348|consensus 98.6 2.7E-08 5.8E-13 102.5 2.4 52 368-419 261-318 (627)
18 KOG4348|consensus 98.5 8.9E-09 1.9E-13 105.9 -1.2 41 379-419 115-155 (627)
19 KOG2856|consensus 98.5 1.9E-08 4.2E-13 101.7 -0.1 51 369-419 415-471 (472)
20 KOG1264|consensus 98.4 1.4E-07 3E-12 103.1 2.4 52 369-420 775-831 (1267)
21 KOG4792|consensus 98.2 4.2E-07 9.2E-12 87.3 0.7 58 362-419 118-180 (293)
22 KOG1029|consensus 98.2 5.2E-07 1.1E-11 98.2 1.5 53 367-419 692-750 (1118)
23 KOG4226|consensus 98.0 1.9E-06 4.1E-11 84.8 1.3 52 368-419 191-249 (379)
24 KOG3655|consensus 97.9 3.4E-06 7.5E-11 88.1 1.7 53 367-419 426-483 (484)
25 KOG1924|consensus 97.9 5.3E-05 1.1E-09 83.2 9.8 25 380-404 623-649 (1102)
26 KOG1843|consensus 97.8 6.4E-06 1.4E-10 84.8 1.4 50 369-418 417-472 (473)
27 KOG3523|consensus 97.7 3.7E-06 7.9E-11 90.0 -1.7 50 371-420 613-666 (695)
28 KOG4792|consensus 97.7 2.1E-05 4.6E-10 75.8 3.4 56 363-419 229-284 (293)
29 KOG0515|consensus 97.6 1.5E-05 3.3E-10 84.4 0.9 47 371-417 686-739 (752)
30 KOG3875|consensus 97.6 2E-05 4.4E-10 78.8 0.8 51 369-419 269-330 (362)
31 KOG3601|consensus 97.5 4.3E-05 9.3E-10 72.9 2.3 50 369-418 164-217 (222)
32 KOG1702|consensus 97.5 8E-05 1.7E-09 70.9 3.4 49 371-419 210-264 (264)
33 KOG3632|consensus 97.4 6.9E-05 1.5E-09 83.9 2.9 51 369-419 1139-1202(1335)
34 KOG2222|consensus 97.2 8.9E-05 1.9E-09 77.9 0.2 51 369-419 549-603 (848)
35 KOG4773|consensus 96.8 0.00017 3.8E-09 73.2 -1.5 41 379-419 190-230 (386)
36 KOG1451|consensus 96.8 0.0009 1.9E-08 72.0 3.0 41 379-419 771-812 (812)
37 KOG1924|consensus 96.7 0.0059 1.3E-07 67.7 8.6 11 325-335 589-599 (1102)
38 KOG4278|consensus 96.6 0.0013 2.8E-08 71.8 3.2 54 365-419 87-146 (1157)
39 KOG2546|consensus 96.2 0.00015 3.3E-09 75.2 -6.7 98 20-123 213-325 (483)
40 KOG3771|consensus 95.9 0.0035 7.6E-08 66.0 1.9 51 367-417 399-454 (460)
41 KOG3775|consensus 95.8 0.0044 9.5E-08 63.8 1.9 41 379-419 277-319 (482)
42 KOG4575|consensus 95.8 0.0072 1.6E-07 65.7 3.3 51 368-418 8-64 (874)
43 KOG4429|consensus 95.4 0.0058 1.3E-07 61.2 1.1 49 371-419 366-418 (421)
44 KOG0609|consensus 95.4 0.0053 1.1E-07 65.7 0.7 40 379-418 236-280 (542)
45 KOG3632|consensus 94.5 0.019 4.1E-07 65.1 2.1 40 379-418 1266-1306(1335)
46 KOG0197|consensus 94.5 0.0094 2E-07 63.4 -0.3 50 369-418 12-68 (468)
47 PF08239 SH3_3: Bacterial SH3 94.3 0.073 1.6E-06 39.4 4.3 36 382-417 18-55 (55)
48 KOG3557|consensus 93.0 0.02 4.3E-07 62.5 -1.2 51 368-419 500-555 (721)
49 smart00287 SH3b Bacterial SH3 92.4 0.2 4.3E-06 37.8 4.0 36 382-417 26-62 (63)
50 PF14603 hSH3: Helically-exten 91.4 0.27 5.8E-06 41.3 3.9 39 379-417 31-70 (89)
51 KOG0199|consensus 91.1 0.18 3.8E-06 56.4 3.3 41 377-417 387-430 (1039)
52 PF06347 SH3_4: Bacterial SH3 89.0 0.75 1.6E-05 34.3 4.4 35 381-416 19-53 (55)
53 KOG3725|consensus 88.6 0.1 2.2E-06 51.7 -0.7 49 371-419 320-374 (375)
54 PRK10884 SH3 domain-containing 88.4 0.49 1.1E-05 45.5 3.7 37 382-418 49-87 (206)
55 KOG3812|consensus 86.6 0.17 3.7E-06 52.0 -0.6 35 379-413 80-117 (475)
56 cd00193 t_SNARE Soluble NSF (N 86.4 3 6.5E-05 30.7 6.3 46 50-95 3-48 (60)
57 smart00743 Agenet Tudor-like d 84.9 0.84 1.8E-05 34.7 2.7 23 382-404 2-24 (61)
58 smart00397 t_SNARE Helical reg 84.4 7.2 0.00016 29.0 7.7 50 46-95 5-54 (66)
59 KOG3565|consensus 80.3 0.46 9.9E-06 52.8 -0.6 54 366-419 576-636 (640)
60 TIGR02492 flgK_ends flagellar 79.9 13 0.00029 37.7 9.9 90 3-97 92-183 (322)
61 KOG2996|consensus 79.9 0.74 1.6E-05 50.4 0.8 39 381-419 627-668 (865)
62 KOG3671|consensus 79.8 63 0.0014 35.3 14.9 11 127-137 239-249 (569)
63 COG3103 SH3 domain protein [Si 79.4 2.5 5.5E-05 40.7 4.3 38 381-418 48-87 (205)
64 PRK13914 invasion associated s 79.4 2.2 4.8E-05 45.9 4.2 38 381-418 103-141 (481)
65 KOG3601|consensus 77.9 0.64 1.4E-05 44.9 -0.3 52 367-418 57-112 (222)
66 PF05739 SNARE: SNARE domain; 77.9 10 0.00022 28.7 6.5 41 55-95 6-46 (63)
67 KOG4384|consensus 75.9 1.7 3.6E-05 45.0 2.0 41 379-419 153-193 (361)
68 PRK07739 flgK flagellar hook-a 72.2 27 0.00058 37.9 10.2 74 17-95 119-192 (507)
69 KOG0040|consensus 70.4 0.15 3.2E-06 60.5 -7.7 53 367-419 967-1023(2399)
70 PRK07191 flgK flagellar hook-a 70.2 32 0.00069 36.7 10.1 89 3-97 93-183 (456)
71 cd07620 BAR_SH3BP1 The Bin/Amp 68.5 36 0.00079 34.0 9.3 80 4-84 112-224 (257)
72 cd07618 BAR_Rich1 The Bin/Amph 67.0 55 0.0012 32.5 10.3 82 3-85 111-214 (246)
73 cd07616 BAR_Endophilin_B1 The 66.6 23 0.00049 34.8 7.4 75 4-83 124-215 (229)
74 PRK08471 flgK flagellar hook-a 66.0 40 0.00086 37.6 10.1 75 18-97 113-188 (613)
75 PRK08147 flgK flagellar hook-a 65.4 44 0.00095 36.5 10.2 55 43-98 130-185 (547)
76 PRK08871 flgK flagellar hook-a 65.1 42 0.00092 37.5 10.1 73 18-95 111-183 (626)
77 PRK12715 flgK flagellar hook-a 64.8 43 0.00093 37.6 10.1 74 17-95 107-180 (649)
78 PRK06945 flgK flagellar hook-a 64.4 44 0.00096 37.5 10.1 73 18-95 109-181 (651)
79 PRK05683 flgK flagellar hook-a 63.9 43 0.00093 37.8 9.9 73 18-95 108-180 (676)
80 PF12731 Mating_N: Mating-type 63.7 58 0.0013 27.4 8.5 31 51-81 58-88 (95)
81 PF12352 V-SNARE_C: Snare regi 63.4 22 0.00047 27.4 5.5 36 60-95 15-50 (66)
82 PF08727 P3A: Poliovirus 3A pr 63.2 5.2 0.00011 31.1 1.8 28 8-36 12-39 (57)
83 PRK14140 heat shock protein Gr 62.0 64 0.0014 30.8 9.4 34 3-37 37-70 (191)
84 PRK12714 flgK flagellar hook-a 60.3 59 0.0013 36.3 10.1 72 19-95 109-180 (624)
85 TIGR01985 phasin_2 phasin. Mem 59.6 77 0.0017 27.5 8.8 96 2-97 4-103 (112)
86 PRK06799 flgK flagellar hook-a 59.3 66 0.0014 34.2 9.9 72 19-95 114-185 (431)
87 cd07615 BAR_Endophilin_A3 The 59.3 48 0.001 32.4 8.2 73 4-80 119-199 (223)
88 KOG2209|consensus 58.2 4.1 8.9E-05 41.9 0.7 70 23-92 69-146 (445)
89 PF06013 WXG100: Proteins of 1 57.8 83 0.0018 24.0 9.7 60 10-71 14-73 (86)
90 PRK06665 flgK flagellar hook-a 57.3 56 0.0012 36.5 9.4 72 19-95 121-192 (627)
91 PRK07521 flgK flagellar hook-a 57.2 61 0.0013 34.9 9.4 72 19-95 104-175 (483)
92 cd07613 BAR_Endophilin_A1 The 51.7 77 0.0017 31.1 8.2 66 11-81 129-200 (223)
93 PF10267 Tmemb_cc2: Predicted 50.9 1.1E+02 0.0025 32.4 9.9 32 53-84 248-279 (395)
94 KOG3065|consensus 50.0 54 0.0012 33.1 7.0 41 54-95 81-121 (273)
95 KOG3705|consensus 49.4 8.6 0.00019 40.8 1.3 40 379-418 524-565 (580)
96 cd07619 BAR_Rich2 The Bin/Amph 48.4 1.8E+02 0.0038 29.0 10.3 34 4-38 112-145 (248)
97 cd07600 BAR_Gvp36 The Bin/Amph 47.6 1.8E+02 0.0039 28.7 10.2 83 4-94 138-236 (242)
98 cd07595 BAR_RhoGAP_Rich-like T 47.1 1.9E+02 0.0041 28.5 10.3 78 3-81 111-208 (244)
99 PF10732 DUF2524: Protein of u 47.0 1.2E+02 0.0025 25.5 7.3 77 15-94 3-79 (84)
100 KOG4677|consensus 46.9 1.3E+02 0.0028 32.7 9.4 44 32-75 292-342 (554)
101 PF05531 NPV_P10: Nucleopolyhe 46.2 71 0.0015 26.2 5.9 24 72-95 40-63 (75)
102 COG1256 FlgK Flagellar hook-as 46.1 1.4E+02 0.0031 33.0 10.1 74 17-95 111-184 (552)
103 PF11302 DUF3104: Protein of u 45.8 21 0.00046 29.3 2.8 24 381-404 4-33 (75)
104 PF00010 HLH: Helix-loop-helix 44.4 24 0.00051 26.1 2.8 42 15-56 12-53 (55)
105 PF01442 Apolipoprotein: Apoli 42.0 2.5E+02 0.0053 24.9 10.8 49 45-93 133-182 (202)
106 PF00627 UBA: UBA/TS-N domain; 41.5 31 0.00066 23.7 2.8 22 11-32 15-36 (37)
107 COG4396 Mu-like prophage host- 41.0 31 0.00066 31.7 3.4 29 8-36 48-77 (170)
108 TIGR02135 phoU_full phosphate 40.9 1.1E+02 0.0023 27.8 7.1 73 18-93 80-157 (212)
109 PF04740 LXG: LXG domain of WX 40.6 2.6E+02 0.0057 25.8 9.8 70 1-76 5-77 (204)
110 KOG3856|consensus 40.4 35 0.00077 30.6 3.6 33 2-39 17-49 (135)
111 PF00015 MCPsignal: Methyl-acc 40.3 2.2E+02 0.0047 25.9 9.1 38 58-95 140-177 (213)
112 PRK11115 transcriptional regul 39.8 1.6E+02 0.0035 27.8 8.4 20 17-36 90-109 (236)
113 PF08397 IMD: IRSp53/MIM homol 39.6 2.4E+02 0.0051 27.0 9.5 62 17-86 148-211 (219)
114 COG1283 NptA Na+/phosphate sym 37.6 1.7E+02 0.0036 32.4 8.9 78 14-92 400-489 (533)
115 PRK14143 heat shock protein Gr 37.3 3.8E+02 0.0081 26.5 10.6 45 7-57 71-118 (238)
116 PF03357 Snf7: Snf7; InterPro 37.2 3E+02 0.0064 24.4 9.5 22 15-36 2-23 (171)
117 PF04344 CheZ: Chemotaxis phos 37.1 2.1E+02 0.0046 27.6 8.7 51 44-95 96-149 (214)
118 PF08637 NCA2: ATP synthase re 37.0 1.4E+02 0.003 30.2 7.8 79 14-95 65-155 (290)
119 cd07614 BAR_Endophilin_A2 The 36.5 1.6E+02 0.0034 28.9 7.7 74 4-81 119-200 (223)
120 KOG3304|consensus 36.4 3.2E+02 0.0069 25.0 8.9 89 4-92 20-131 (148)
121 COG1463 Ttg2C ABC-type transpo 36.3 3E+02 0.0064 28.4 10.2 77 15-95 174-250 (359)
122 PRK14155 heat shock protein Gr 35.9 3.3E+02 0.0071 26.4 9.7 63 8-76 18-80 (208)
123 TIGR03513 GldL_gliding gliding 35.7 3.9E+02 0.0085 25.9 10.1 65 16-95 105-169 (202)
124 PRK14144 heat shock protein Gr 35.5 2.2E+02 0.0047 27.5 8.4 44 8-57 50-96 (199)
125 PF07540 NOC3p: Nucleolar comp 35.1 1.1E+02 0.0024 26.0 5.7 43 19-70 19-67 (95)
126 COG1392 Phosphate transport re 34.2 2.7E+02 0.0058 27.0 8.9 85 11-95 74-168 (217)
127 PRK14145 heat shock protein Gr 33.7 4E+02 0.0088 25.6 9.9 28 8-35 50-77 (196)
128 PRK14151 heat shock protein Gr 33.3 3.8E+02 0.0083 25.2 9.5 63 9-77 26-88 (176)
129 PRK14147 heat shock protein Gr 33.0 3.8E+02 0.0082 25.1 9.4 43 8-56 23-68 (172)
130 KOG0174|consensus 32.9 21 0.00046 34.4 1.1 30 31-64 156-185 (224)
131 PLN03217 transcription factor 32.6 2.7E+02 0.0058 23.7 7.3 32 43-78 47-78 (93)
132 PRK08871 flgK flagellar hook-a 32.6 2.7E+02 0.0059 31.3 9.8 49 14-72 130-178 (626)
133 COG3807 Uncharacterized protei 32.5 38 0.00083 31.5 2.6 25 388-412 133-157 (171)
134 KOG3003|consensus 31.7 2.4E+02 0.0051 28.0 8.0 37 17-60 87-124 (236)
135 PRK02793 phi X174 lysis protei 31.6 1.8E+02 0.0038 23.4 6.1 34 61-95 17-50 (72)
136 PF09278 MerR-DNA-bind: MerR, 31.3 2.3E+02 0.0049 21.3 6.5 17 17-33 8-24 (65)
137 PRK14162 heat shock protein Gr 31.2 4E+02 0.0086 25.6 9.4 43 9-57 45-90 (194)
138 TIGR00153 conserved hypothetic 30.7 4.5E+02 0.0098 24.8 9.8 83 12-95 76-168 (216)
139 PLN02742 Probable galacturonos 30.5 2.1E+02 0.0046 31.6 8.2 62 40-105 131-192 (534)
140 PF04088 Peroxin-13_N: Peroxin 30.2 3.9E+02 0.0084 24.9 8.9 65 4-79 16-80 (158)
141 TIGR01013 2a58 Phosphate:Na+ S 30.0 2.9E+02 0.0063 29.3 9.2 51 16-66 337-392 (456)
142 PF12913 SH3_6: SH3 domain of 29.9 90 0.0019 24.0 3.9 35 379-413 19-54 (54)
143 PF10498 IFT57: Intra-flagella 29.8 5.4E+02 0.012 26.9 10.9 34 1-34 225-258 (359)
144 PRK14139 heat shock protein Gr 29.8 5E+02 0.011 24.7 9.7 45 8-58 37-84 (185)
145 smart00283 MA Methyl-accepting 29.6 4.6E+02 0.0099 24.3 10.7 29 64-92 204-232 (262)
146 PF05641 Agenet: Agenet domain 29.3 53 0.0012 25.6 2.7 22 383-404 1-25 (68)
147 COG1689 Uncharacterized protei 29.1 1.5E+02 0.0032 29.5 6.1 46 41-86 53-98 (274)
148 PF09509 Hypoth_Ymh: Protein o 29.1 72 0.0016 28.2 3.7 27 28-54 8-34 (125)
149 PF05875 Ceramidase: Ceramidas 28.9 18 0.00039 35.4 -0.1 11 29-39 10-20 (262)
150 PF05164 ZapA: Cell division p 28.5 1.2E+02 0.0027 24.1 4.8 67 22-94 19-85 (89)
151 PRK08032 fliD flagellar cappin 28.3 3.9E+02 0.0084 28.7 9.8 88 3-95 361-452 (462)
152 PLN02956 PSII-Q subunit 28.2 3.7E+02 0.008 25.8 8.4 73 14-95 84-157 (185)
153 PF03276 Gag_spuma: Spumavirus 28.0 1.4E+02 0.0031 33.0 6.4 81 15-95 84-175 (582)
154 PRK14154 heat shock protein Gr 27.8 5.7E+02 0.012 24.8 10.3 43 8-56 57-102 (208)
155 PF13047 DUF3907: Protein of u 27.8 1E+02 0.0022 28.4 4.5 56 4-64 25-84 (148)
156 PF02194 PXA: PXA domain; Int 27.2 4.7E+02 0.01 23.6 9.2 66 24-90 6-83 (185)
157 TIGR02865 spore_II_E stage II 27.1 2.4E+02 0.0053 32.3 8.4 77 1-77 379-461 (764)
158 cd07592 BAR_Endophilin_A The B 27.1 6E+02 0.013 24.8 10.5 77 4-84 119-203 (223)
159 PLN02867 Probable galacturonos 26.9 2.6E+02 0.0056 31.0 8.1 62 40-105 115-176 (535)
160 COG1139 Uncharacterized conser 26.8 1.6E+02 0.0034 31.9 6.3 50 7-62 26-75 (459)
161 PRK14148 heat shock protein Gr 26.6 5.2E+02 0.011 24.8 9.3 28 8-35 45-72 (195)
162 cd07594 BAR_Endophilin_B The B 26.4 5.9E+02 0.013 24.9 9.9 73 4-81 124-213 (229)
163 smart00283 MA Methyl-accepting 26.1 5.3E+02 0.011 23.8 11.0 31 65-95 198-228 (262)
164 PF01865 PhoU_div: Protein of 25.9 2E+02 0.0044 26.8 6.5 25 12-36 73-97 (214)
165 KOG2629|consensus 25.4 3.9E+02 0.0084 27.4 8.5 16 80-95 174-189 (300)
166 TIGR02391 hypoth_ymh conserved 25.3 87 0.0019 27.9 3.6 28 28-55 4-31 (125)
167 TIGR01844 type_I_sec_TolC type 25.1 4.2E+02 0.0091 26.6 9.0 77 16-92 307-383 (415)
168 PRK10972 Z-ring-associated pro 25.0 1.4E+02 0.0031 26.1 4.8 67 21-95 22-88 (109)
169 cd07593 BAR_MUG137_fungi The B 24.8 5.3E+02 0.011 25.0 9.2 66 11-81 115-192 (215)
170 PLN03094 Substrate binding sub 24.8 5.1E+02 0.011 27.3 9.6 59 43-102 288-352 (370)
171 KOG1961|consensus 24.8 2.6E+02 0.0055 31.5 7.6 89 2-95 23-117 (683)
172 PF11221 Med21: Subunit 21 of 24.6 5E+02 0.011 23.3 8.5 95 1-95 1-118 (144)
173 PLN02769 Probable galacturonos 24.5 3.7E+02 0.008 30.4 8.9 60 42-105 239-298 (629)
174 KOG1916|consensus 24.5 3.2E+02 0.0069 32.5 8.5 29 2-30 931-959 (1283)
175 cd03769 SR_IS607_transposase_l 24.2 17 0.00036 32.1 -1.2 56 22-77 16-83 (134)
176 KOG4057|consensus 24.2 3.8E+02 0.0082 25.1 7.5 54 42-95 9-72 (180)
177 PF03931 Skp1_POZ: Skp1 family 24.2 57 0.0012 25.0 1.9 14 23-36 47-60 (62)
178 KOG3687|consensus 24.0 4.7E+02 0.01 31.5 9.7 91 3-95 665-787 (1697)
179 PF07778 CENP-I: Mis6 ; Inter 23.9 1.2E+02 0.0026 33.3 4.9 55 22-80 54-109 (511)
180 PLN02523 galacturonosyltransfe 23.9 3E+02 0.0064 30.7 7.9 44 62-105 171-214 (559)
181 PRK14163 heat shock protein Gr 23.8 5.2E+02 0.011 25.2 8.8 29 7-35 44-72 (214)
182 PHA03247 large tegument protei 23.6 1.8E+03 0.039 29.8 15.0 16 59-74 2349-2364(3151)
183 PLN02829 Probable galacturonos 23.5 2.4E+02 0.0053 31.8 7.2 61 41-105 239-299 (639)
184 PRK14161 heat shock protein Gr 23.1 6.3E+02 0.014 23.8 9.0 42 10-57 26-70 (178)
185 PHA03386 P10 fibrous body prot 23.0 1.4E+02 0.0031 25.5 4.2 32 63-95 26-57 (94)
186 TIGR02338 gimC_beta prefoldin, 22.3 2.7E+02 0.0058 23.7 6.0 23 42-64 81-103 (110)
187 PF11559 ADIP: Afadin- and alp 22.2 5.6E+02 0.012 22.8 10.1 78 17-94 69-146 (151)
188 TIGR03007 pepcterm_ChnLen poly 21.9 8.6E+02 0.019 25.7 11.0 32 4-38 162-193 (498)
189 PF01025 GrpE: GrpE; InterPro 21.9 2.7E+02 0.0059 24.9 6.3 28 9-37 17-44 (165)
190 smart00333 TUDOR Tudor domain. 21.8 1.4E+02 0.0031 21.7 3.7 22 382-404 2-23 (57)
191 KOG0933|consensus 21.8 9.5E+02 0.021 28.9 11.6 44 2-45 193-247 (1174)
192 PF14992 TMCO5: TMCO5 family 21.7 7E+02 0.015 25.4 9.5 74 13-86 62-156 (280)
193 PRK09465 tolC outer membrane c 21.6 6E+02 0.013 26.0 9.5 32 59-92 375-406 (446)
194 COG1842 PspA Phage shock prote 21.5 5E+02 0.011 25.4 8.3 57 52-109 85-142 (225)
195 PF07111 HCR: Alpha helical co 21.4 6.9E+02 0.015 28.8 10.2 34 6-39 499-532 (739)
196 PLN02910 polygalacturonate 4-a 21.4 4.5E+02 0.0097 29.8 8.7 60 42-105 254-313 (657)
197 PF01893 UPF0058: Uncharacteri 21.3 1.5E+02 0.0032 25.2 4.0 34 16-50 3-36 (89)
198 PRK14141 heat shock protein Gr 21.3 7.6E+02 0.017 24.0 9.6 43 8-56 36-81 (209)
199 KOG1314|consensus 21.1 60 0.0013 34.1 2.0 41 377-418 330-382 (414)
200 TIGR02492 flgK_ends flagellar 21.0 2.6E+02 0.0056 28.4 6.5 49 51-99 129-178 (322)
201 PRK14552 C/D box methylation g 20.6 2.1E+02 0.0045 30.6 5.9 33 63-95 232-264 (414)
202 PF03310 Cauli_DNA-bind: Cauli 20.5 5.8E+02 0.013 22.9 7.7 66 8-80 4-71 (121)
203 cd07662 BAR_SNX6 The Bin/Amphi 20.5 6.8E+02 0.015 24.5 8.9 73 15-92 28-101 (218)
204 PRK11032 hypothetical protein; 20.3 7.1E+02 0.015 23.2 10.6 21 43-63 44-64 (160)
205 PLN02718 Probable galacturonos 20.1 3.9E+02 0.0085 30.0 8.0 60 42-105 222-281 (603)
No 1
>KOG2546|consensus
Probab=100.00 E-value=4.4e-88 Score=677.70 Aligned_cols=391 Identities=47% Similarity=0.712 Sum_probs=307.2
Q ss_pred ChHHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 1 MAELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQT 80 (420)
Q Consensus 1 m~el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~ 80 (420)
|+||++|||+|||++|++|+++|.||.+||||||+||+|+.||++||||||+|++|+|||||||||+||+++|+|||+|+
T Consensus 3 maelq~lie~eIp~gR~al~~s~~nL~rVadycednYiQs~~kk~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~ 82 (483)
T KOG2546|consen 3 MAELQSLIESEIPDGRKALRSSYDNLPRVADYCEDNYIQSADKKAALEETKAYTTQSLASVAYQINTLAGHALRMLDLQA 82 (483)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHhhHhhhhhhhhchhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhh-------------hceeeccccccccceeeCCCCCCCCCCccccCCCCCCccccCccccc---CC
Q psy9761 81 AQLEEMESQMNHIGQ-------------IGVLTANKTTNRQYKIIAPANPEKPIKYVRKPIDLNALDDIGHGVRN---AP 144 (420)
Q Consensus 81 ~~~~~~e~~i~~l~q-------------ig~lt~~k~~~r~~ki~~p~~~e~~~~y~r~pi~y~~ld~vGhg~~~---~~ 144 (420)
.+|+.||++|++|+| ||+||+||+.+|+||||+|+++|.+++|+|+||||++||+||||||. ..
T Consensus 83 ~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk~~~r~hkiIap~nl~~~iryvrkPid~~mLd~igHGIr~~~~~r 162 (483)
T KOG2546|consen 83 PQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNKGLSRQHKIIAPANLEVPIRYVRKPIDYSMLDDIGHGIRGSWETR 162 (483)
T ss_pred HHHHHHHhhhhhhhhhheecchhhhhhhccceeeccccccccceeccccCCCCccceeccccceeeeccccccccccccc
Confidence 999999999999999 99999999999999999999999999999999999999999999996 23
Q ss_pred CCCCCCCCccccccCCCCCCCCCCCCCCC-----CccccccccCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCC-
Q psy9761 145 RNKQRTPSQSNICVVPGPPAPTTKPPTPP-----SVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYP----IGHPKR- 214 (420)
Q Consensus 145 ~~~~~~~~~gt~~r~~~~~~~t~kpp~p~-----~~~~~~gtLg~~~~yrt~~pv~pP~vp~~~~~~~~----~~~~~~- 214 (420)
+ ..+.+++|+|+|+ +++++|+++|+ ++++ |||||+++|||+++|.||+||++|++++. ++|+.|
T Consensus 163 g-~~~g~~t~~l~rs---~pstqk~paPp~~v~~~srt--~tlGr~~~~Rtl~pv~pp~vP~~Y~~~~~~~~~~~s~~rm 236 (483)
T KOG2546|consen 163 G-RFDGTSTGKLSRS---GPSTQKPPAPPLVVELGSRT--GTLGRCQEYRTLEPVLPPLVPSDYAPDYTEKYLHQSPKRM 236 (483)
T ss_pred c-CcCcccccccCCC---CCcccCCCCCchhhhcCccc--cccccCCccccCCccCCCCCcccccccccccccccchhhh
Confidence 3 6667899999999 79999999999 6666 99999999999999999999999999985 357777
Q ss_pred ----cCCCCC-CCC-----------CCCCCCCCCCCCCCCCCCC-----CCCC-CCCCCC--------CCCCCCchhHHH
Q psy9761 215 ----ERGPGY-GTL-----------PQVGMVHPLPPPPPENMPP-----HPQQ-QDPRSH--------YGQFSLAQQQQQ 264 (420)
Q Consensus 215 ----~~~~~~-g~~-----------~~~g~~~~~p~P~pps~~P-----PP~p-~~~~~~--------~~~~~~pp~~~~ 264 (420)
++++++ ++. +.+|.+++...+.++...+ ++.. ...++| ..++.+.+++..
T Consensus 237 ~~~n~~~~t~~~~~~~~gt~~~sg~g~~g~q~a~~~~~~p~~~~~~~~q~~~~~~~~~~~~~t~~~~~s~~~lr~~q~~a 316 (483)
T KOG2546|consen 237 ASDNSKDYTVKALVDHLGTVESSGGGLFGHQNADGSTAPPRASCVQAIQPPVCVCSFHQQLLTCRGYISKPGLRQQQLLA 316 (483)
T ss_pred hhhcccccccccccccccccccccccccCCcCCCCCCCCCccccccccCCceeeeecccCccccccccccccccchhhhc
Confidence 455555 211 5567888887776664332 1110 111112 144666666665
Q ss_pred HHHHHhhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCc--------------ccCC---CCCCCCCCCCC-Ccc
Q psy9761 265 QAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQ--------------YQAG---MMSQQPPPPPS-MQQ 326 (420)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~pp~ppPP~~~--------------~~~~---~~~p~PPPPpp-~p~ 326 (420)
+... ++. .+++ | .+.++...-.|+||... .+.. .+.++||+++. .++
T Consensus 317 ~~p~---q~~-----~~~~--P-----~~~n~~vs~aP~pp~~~qq~~q~~~~~~~~~~~~~i~~~~tsppp~~~~~~~~ 381 (483)
T KOG2546|consen 317 VIPL---QPK-----HPIP--P-----NSVNKRVSFAPPPPTDTQQNQQQPISRGVMSSQRNLNRNDTSPPPSPPSNQPG 381 (483)
T ss_pred cccc---ccC-----CCCC--C-----ccccCccccCCCCCcchhhchhhHHhhhhhhhccccccccCCCCCCCccccCC
Confidence 5443 111 3333 2 22333333333333222 1122 12222332222 267
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCCCCccccCCCCCCCCCCCCCccccccccC------------CccccCCCCEEEEEEe
Q psy9761 327 RSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPKNYIEK------------DELSFQESAVIYVLKK 394 (420)
Q Consensus 327 ~~~~pPPPPPP~~~g~~sd~~~~~~~~~s~~~~~~P~~~~~~~~v~~~Y~~~------------dELSf~kGDiI~Vl~k 394 (420)
+++.||||+++.. .++.++.+......+|.++++.|++..|.++ |||+|.+|.+|+|++|
T Consensus 382 ~~dlppPp~~~~~--------~~g~ee~st~~~~~~~ap~sp~w~p~syLEkVv~iydy~~~KddeLsf~E~ailyv~kk 453 (483)
T KOG2546|consen 382 PDDLPPPPPKSLS--------DLGREEKSTLPQPPPVAPSSPAWVPTSYLEKVVAIYDYTADKDDELSFAEGAILYVLKK 453 (483)
T ss_pred CCCCCCCCCCccc--------cccccccccCCCCCCCCCCCcccccHHHHHHHHhhcccccccccccccccccEEEEEEe
Confidence 7777765554322 1665444444455578889999999888665 9999999999999999
Q ss_pred cCCCeeEEEECCeeeEecCCCeeccC
Q psy9761 395 NDDGWWEGVMDGITGLFPGNYVEPCV 420 (420)
Q Consensus 395 ~~~GWweG~~~G~~G~FPsnYVe~i~ 420 (420)
++||||||.++|++|+||+|||+.|+
T Consensus 454 nddgw~EgV~~~VTglFpgnyve~~~ 479 (483)
T KOG2546|consen 454 NDDGWYEGVQDGVTGLFPGNYVEPLK 479 (483)
T ss_pred cCCcchhheecCcceeccCccccccc
Confidence 99999999999999999999999875
No 2
>PF07815 Abi_HHR: Abl-interactor HHR; InterPro: IPR012849 The region is found towards the N terminus of a number of adaptor proteins that interact with Abl-family tyrosine kinases []. More specifically, it is termed the homeo-domain homologous region (HHR), as it is similar to the DNA-binding region of homeo-domain proteins []. Other homeo-domain proteins have been implicated in specifying positional information during embryonic development, and in the regulation of the expression of cell-type specific genes []. The Abl-interactor proteins are thought to coordinate the cytoplasmic and nuclear functions of the Abl-family kinases, and seem to be involved in cytoskeletal reorganisation, but their precise role remains unclear []. ; GO: 0005737 cytoplasm; PDB: 3P8C_F.
Probab=99.84 E-value=8e-22 Score=159.47 Aligned_cols=75 Identities=51% Similarity=0.840 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhceeeccccccccceeeCCCCCCCCCCccccCCCCCCccccCcccccC--CCCCCCC
Q psy9761 73 LQLLDLQTAQLEEMESQMNHIGQIGVLTANKTTNRQYKIIAPANPEKPIKYVRKPIDLNALDDIGHGVRNA--PRNKQRT 150 (420)
Q Consensus 73 l~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~~r~~ki~~p~~~e~~~~y~r~pi~y~~ld~vGhg~~~~--~~~~~~~ 150 (420)
-+.+|++.+++.+=| ||+||++|+..|+|||++|+++|++++|+|+||||++|||||||||.. ...+++.
T Consensus 2 ~q~v~iHkEKvARRe--------IG~lT~~k~~~r~~kii~P~~~E~~~~Y~RkPIdys~LDdvGHGvk~~~~~~~~~~~ 73 (79)
T PF07815_consen 2 SQTVDIHKEKVARRE--------IGSLTTNKNTSRQHKIIAPANPEPPQRYVRKPIDYSILDDVGHGVKSSQPPRSSTQL 73 (79)
T ss_dssp HHHHHHHHHHHHHHH--------HHTT-EE-------SEE--SS-------------TTTTTTTTT--------------
T ss_pred chhhhhHHHHHHHHH--------HhhcccccccCCccceeCCCCCCCCCCceeccCccccccccCcccccccCccCCccc
Confidence 467888999988888 999999999999999999999999999999999999999999999961 1114455
Q ss_pred CCccc
Q psy9761 151 PSQSN 155 (420)
Q Consensus 151 ~~~gt 155 (420)
+++||
T Consensus 74 ~~tGs 78 (79)
T PF07815_consen 74 SRTGS 78 (79)
T ss_dssp -----
T ss_pred cccCC
Confidence 55554
No 3
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.30 E-value=2.9e-12 Score=95.19 Aligned_cols=39 Identities=67% Similarity=1.175 Sum_probs=36.0
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCee
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe 417 (420)
+||+|++||+|.|+++.++|||.|+++|+.|+||+|||+
T Consensus 11 dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 11 DELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp TB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred CEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence 999999999999999999999999999999999999996
No 4
>KOG2070|consensus
Probab=99.24 E-value=2e-12 Score=133.94 Aligned_cols=52 Identities=44% Similarity=0.827 Sum_probs=46.4
Q ss_pred CCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
+-.|++.|.+. |||+|.|||||+|....++|||||.++|++||||+|||.+|
T Consensus 17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~ei 72 (661)
T KOG2070|consen 17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREI 72 (661)
T ss_pred ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHH
Confidence 44466666555 99999999999999999999999999999999999999876
No 5
>KOG0162|consensus
Probab=99.16 E-value=3.9e-10 Score=121.32 Aligned_cols=52 Identities=38% Similarity=0.797 Sum_probs=47.3
Q ss_pred CCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
...+.++|++. +||+|++||+|.|+.++..|||.|+.+|++||||.|||+++
T Consensus 1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred CcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence 35577888776 99999999999999999999999999999999999999864
No 6
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.13 E-value=4.7e-11 Score=90.12 Aligned_cols=41 Identities=56% Similarity=1.042 Sum_probs=36.9
Q ss_pred CccccCCCCEEEEE-EecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVL-KKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl-~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
+||+|++||+|.|+ ++.++|||.|+.+|+.||||.+||+++
T Consensus 14 ~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 14 DELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp TB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred CceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence 89999999999999 888899999999999999999999874
No 7
>KOG4226|consensus
Probab=99.05 E-value=1e-10 Score=114.29 Aligned_cols=57 Identities=40% Similarity=0.805 Sum_probs=52.1
Q ss_pred CCCCCCCccccccccC--CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 363 RDQDLPGWVPKNYIEK--DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 363 ~~~~~~~~v~~~Y~~~--dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
|+.+.+.+|+..|..+ |||+|.+|+.|+|++|+.+|||.|..+|..||||+|||++.
T Consensus 104 ~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~ 162 (379)
T KOG4226|consen 104 YDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEE 162 (379)
T ss_pred hhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehh
Confidence 4555678899999877 99999999999999999999999999999999999999874
No 8
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.85 E-value=3.8e-09 Score=77.41 Aligned_cols=41 Identities=59% Similarity=1.156 Sum_probs=38.4
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEEC-CeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMD-GITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~-G~~G~FPsnYVe~i 419 (420)
+||+|++||+|.|+++.++|||.+++. |+.||||.+||+.+
T Consensus 17 ~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~ 58 (58)
T smart00326 17 DELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI 58 (58)
T ss_pred CCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence 899999999999999989999999986 99999999999864
No 9
>KOG2199|consensus
Probab=98.84 E-value=7.1e-10 Score=112.92 Aligned_cols=52 Identities=37% Similarity=0.609 Sum_probs=48.2
Q ss_pred CCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
...|+++||++ +||+|++||||.|++..+.+||.|.+.+..|+||+|||..+
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~ 270 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTAD 270 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhh
Confidence 45689999887 99999999999999999999999999999999999999764
No 10
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=98.80 E-value=6.7e-09 Score=76.22 Aligned_cols=35 Identities=49% Similarity=0.958 Sum_probs=31.9
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEEC--CeeeEecC
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMD--GITGLFPG 413 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~--G~~G~FPs 413 (420)
+||+|++||+|.|+++.++|||.|+.. |+.||||+
T Consensus 12 ~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 12 DELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp TBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred CEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence 999999999999999999999999983 79999995
No 11
>KOG1029|consensus
Probab=98.78 E-value=1.6e-09 Score=117.06 Aligned_cols=50 Identities=44% Similarity=0.813 Sum_probs=45.5
Q ss_pred ccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 370 WVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 370 ~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
.|++.|+|+ |||+|++||+|.|+.|++.+||.|..+|+.|+||+|||...
T Consensus 1055 qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred eeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccCccccCcccccccc
Confidence 366778776 99999999999999999999999999999999999999653
No 12
>KOG1118|consensus
Probab=98.77 E-value=2.2e-09 Score=106.43 Aligned_cols=54 Identities=35% Similarity=0.573 Sum_probs=49.9
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeeccC
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i~ 420 (420)
+..+|++.|+++ +||.|++||+|.|++..+.+||+|+..|.+|+||.|||+.|+
T Consensus 305 ~~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlv 362 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLV 362 (366)
T ss_pred cchhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEec
Confidence 356789999887 999999999999999999999999999999999999999874
No 13
>KOG2996|consensus
Probab=98.75 E-value=4.9e-09 Score=110.87 Aligned_cols=52 Identities=38% Similarity=0.734 Sum_probs=44.6
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEec--CCCeeEEEECCeeeEecCCCeec
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVEP 418 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~--~~GWweG~~~G~~G~FPsnYVe~ 418 (420)
..+.+.+.|++. .||||++||+|.|+.+. +.|||.|+.+|+.||||++|||+
T Consensus 804 ~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee 861 (865)
T KOG2996|consen 804 VVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEE 861 (865)
T ss_pred eeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCcccccccccccc
Confidence 344466677765 89999999999999883 57999999999999999999986
No 14
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.74 E-value=1.5e-08 Score=73.54 Aligned_cols=40 Identities=63% Similarity=1.172 Sum_probs=36.9
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEECC-eeeEecCCCeec
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMDG-ITGLFPGNYVEP 418 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~G-~~G~FPsnYVe~ 418 (420)
+||+|++||+|.|++..++|||.+++.+ +.||||.+||+.
T Consensus 14 ~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~ 54 (54)
T cd00174 14 DELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVEE 54 (54)
T ss_pred CCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCcC
Confidence 8999999999999999889999999865 999999999863
No 15
>KOG4225|consensus
Probab=98.67 E-value=1.8e-08 Score=103.80 Aligned_cols=52 Identities=33% Similarity=0.664 Sum_probs=46.7
Q ss_pred CCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
....++.|+++ .||.|.+||||+|+++.|+.|++|+.+|+.|+||+||||.+
T Consensus 230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~ 285 (489)
T KOG4225|consen 230 KRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEIL 285 (489)
T ss_pred cchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeec
Confidence 33366677666 99999999999999999999999999999999999999986
No 16
>KOG4225|consensus
Probab=98.62 E-value=1.7e-08 Score=103.98 Aligned_cols=49 Identities=43% Similarity=0.754 Sum_probs=44.3
Q ss_pred cccccccC----CccccCCCCEEEEEEecCCCeeEE--EECCeeeEecCCCeecc
Q psy9761 371 VPKNYIEK----DELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEPC 419 (420)
Q Consensus 371 v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG--~~~G~~G~FPsnYVe~i 419 (420)
+.++|.+. |||.|.+||||.|++|+|+||+.| ++.|+-|.||+|||+.+
T Consensus 435 yrAly~Y~pqnedeLEl~egDii~VmeKcddgWfvGts~rtg~fGtFPgnyV~~~ 489 (489)
T KOG4225|consen 435 YRALYSYRPQNEDELELREGDIIDVMEKCDDGWFVGTSRRTGKFGTFPGNYVKRL 489 (489)
T ss_pred ceeccccCCCCchhheeccCCEEeeeecccCcceeccceecccccccCccccccC
Confidence 67777665 999999999999999999999999 56899999999999864
No 17
>KOG4348|consensus
Probab=98.55 E-value=2.7e-08 Score=102.48 Aligned_cols=52 Identities=37% Similarity=0.894 Sum_probs=43.4
Q ss_pred CCccccccccC----CccccCCCCEEEEEEec--CCCeeEEEECCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~--~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
..|++..|.|. |||+|++||+|.+|.|+ +-|||+|+++|+.|+||-|||+.|
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv 318 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELV 318 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhc
Confidence 34455555444 99999999999999884 679999999999999999999865
No 18
>KOG4348|consensus
Probab=98.55 E-value=8.9e-09 Score=105.94 Aligned_cols=41 Identities=34% Similarity=0.928 Sum_probs=39.8
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
|||+|+.||+|.|+...++|||+|+++|+.|+||+|||.++
T Consensus 115 DELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel 155 (627)
T KOG4348|consen 115 DELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKEL 155 (627)
T ss_pred ceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceec
Confidence 99999999999999999999999999999999999999875
No 19
>KOG2856|consensus
Probab=98.51 E-value=1.9e-08 Score=101.75 Aligned_cols=51 Identities=39% Similarity=0.670 Sum_probs=45.6
Q ss_pred CccccccccC----CccccCCCCEEEEEEe-cCCCeeEEEEC-CeeeEecCCCeecc
Q psy9761 369 GWVPKNYIEK----DELSFQESAVIYVLKK-NDDGWWEGVMD-GITGLFPGNYVEPC 419 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDiI~Vl~k-~~~GWweG~~~-G~~G~FPsnYVe~i 419 (420)
..|+++||+. |||+|++||.|.++.. ++-|||.|+++ |+.|+||+||||.+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence 4578899887 9999999999999876 56799999996 99999999999975
No 20
>KOG1264|consensus
Probab=98.38 E-value=1.4e-07 Score=103.10 Aligned_cols=52 Identities=42% Similarity=0.684 Sum_probs=47.4
Q ss_pred CccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCe-eeEecCCCeeccC
Q psy9761 369 GWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGI-TGLFPGNYVEPCV 420 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~-~G~FPsnYVe~i~ 420 (420)
..++++|+++ |||+|.+|.+|.+++|.++|||.|...|+ .+|||+|||++|.
T Consensus 775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~ 831 (1267)
T KOG1264|consen 775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIS 831 (1267)
T ss_pred hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhc
Confidence 5588899887 99999999999999999999999999875 6999999999873
No 21
>KOG4792|consensus
Probab=98.18 E-value=4.2e-07 Score=87.30 Aligned_cols=58 Identities=22% Similarity=0.522 Sum_probs=49.5
Q ss_pred CCCCCCCCccccccccC----CccccCCCCEEEEEEecCCCeeEEEE-CCeeeEecCCCeecc
Q psy9761 362 PRDQDLPGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVM-DGITGLFPGNYVEPC 419 (420)
Q Consensus 362 P~~~~~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~-~G~~G~FPsnYVe~i 419 (420)
+...+...++.+.|++. ++|-|++||++.|++|.++.||+.+. .|+.|++|.+||+..
T Consensus 118 ~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~ 180 (293)
T KOG4792|consen 118 ILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKY 180 (293)
T ss_pred ccchhhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhh
Confidence 34444566777777665 88999999999999999999999997 899999999999875
No 22
>KOG1029|consensus
Probab=98.18 E-value=5.2e-07 Score=98.23 Aligned_cols=53 Identities=36% Similarity=0.590 Sum_probs=46.5
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEe--cCCCeeEEEECCeeeEecCCCeecc
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k--~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
+...++++|-+. |||+|..||||.|... .+.||..|.++|++||||.||||.|
T Consensus 692 ~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki 750 (1118)
T KOG1029|consen 692 DTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKI 750 (1118)
T ss_pred ceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhc
Confidence 455677788666 9999999999999876 5789999999999999999999986
No 23
>KOG4226|consensus
Probab=98.00 E-value=1.9e-06 Score=84.80 Aligned_cols=52 Identities=35% Similarity=0.571 Sum_probs=44.9
Q ss_pred CCccccccccC----CccccCCCCEEEEEEe--cCCCeeEEEE-CCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKK--NDDGWWEGVM-DGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k--~~~GWweG~~-~G~~G~FPsnYVe~i 419 (420)
...|.++|.+. +||+|++||.+.|+++ +|.+||.++. +|..|++|.|||+.+
T Consensus 191 l~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl 249 (379)
T KOG4226|consen 191 LHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVL 249 (379)
T ss_pred EEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEe
Confidence 34466777665 8999999999999998 6788999997 899999999999876
No 24
>KOG3655|consensus
Probab=97.93 E-value=3.4e-06 Score=88.06 Aligned_cols=53 Identities=40% Similarity=0.723 Sum_probs=48.4
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEecCCCeeEEEE-CCeeeEecCCCeecc
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVM-DGITGLFPGNYVEPC 419 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~-~G~~G~FPsnYVe~i 419 (420)
...|+.++|++. .||+|..+|+|.+|...++|||.|.. +|..|+||+|||+.|
T Consensus 426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence 567888888876 89999999999999999999999998 899999999999875
No 25
>KOG1924|consensus
Probab=97.89 E-value=5.3e-05 Score=83.21 Aligned_cols=25 Identities=12% Similarity=0.306 Sum_probs=11.6
Q ss_pred ccccCCCCEEEEE--EecCCCeeEEEE
Q psy9761 380 ELSFQESAVIYVL--KKNDDGWWEGVM 404 (420)
Q Consensus 380 ELSf~kGDiI~Vl--~k~~~GWweG~~ 404 (420)
|..+++=.+-.|. +..++-||.+..
T Consensus 623 e~~Mrr~nW~kI~p~d~s~~cFWvkv~ 649 (1102)
T KOG1924|consen 623 EVPMRRFNWSKIVPRDLSENCFWVKVN 649 (1102)
T ss_pred CCccccCCccccCccccCccceeeecc
Confidence 3444444443333 224555676654
No 26
>KOG1843|consensus
Probab=97.82 E-value=6.4e-06 Score=84.76 Aligned_cols=50 Identities=40% Similarity=0.790 Sum_probs=43.0
Q ss_pred CccccccccC----CccccCCCCEEEEEEecC--CCeeEEEECCeeeEecCCCeec
Q psy9761 369 GWVPKNYIEK----DELSFQESAVIYVLKKND--DGWWEGVMDGITGLFPGNYVEP 418 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~--~GWweG~~~G~~G~FPsnYVe~ 418 (420)
..+.+.|.+. ++|+|++||||.|+++.+ +.||+|+.++++|+||+|||+.
T Consensus 417 n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 417 NIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred ceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 3566666655 899999999999999854 6899999999999999999974
No 27
>KOG3523|consensus
Probab=97.75 E-value=3.7e-06 Score=89.99 Aligned_cols=50 Identities=44% Similarity=0.773 Sum_probs=43.6
Q ss_pred cccccccC--CccccCCCCEEEEEEecCCCeeEEEE--CCeeeEecCCCeeccC
Q psy9761 371 VPKNYIEK--DELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEPCV 420 (420)
Q Consensus 371 v~~~Y~~~--dELSf~kGDiI~Vl~k~~~GWweG~~--~G~~G~FPsnYVe~i~ 420 (420)
+...|..+ |||+|..+|++.|+.+..|||++|+. +|..||||..||++|.
T Consensus 613 ~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 613 CVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEIT 666 (695)
T ss_pred eeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhc
Confidence 34455444 99999999999999999999999996 8999999999999873
No 28
>KOG4792|consensus
Probab=97.73 E-value=2.1e-05 Score=75.82 Aligned_cols=56 Identities=30% Similarity=0.490 Sum_probs=49.7
Q ss_pred CCCCCCCccccccccCCccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 363 RDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 363 ~~~~~~~~v~~~Y~~~dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
|+......|+..||. ..|.+++||+|.|.+++-+|-|+|++||+.|.||..||+.+
T Consensus 229 ~Arv~q~RVPnAYDk-TaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDK-TALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred heeeehhcCCCccCh-hhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEee
Confidence 555667778999964 68999999999999999999999999999999999999753
No 29
>KOG0515|consensus
Probab=97.63 E-value=1.5e-05 Score=84.35 Aligned_cols=47 Identities=32% Similarity=0.666 Sum_probs=39.6
Q ss_pred cccccccC----CccccCCCCEEEEEEec---CCCeeEEEECCeeeEecCCCee
Q psy9761 371 VPKNYIEK----DELSFQESAVIYVLKKN---DDGWWEGVMDGITGLFPGNYVE 417 (420)
Q Consensus 371 v~~~Y~~~----dELSf~kGDiI~Vl~k~---~~GWweG~~~G~~G~FPsnYVe 417 (420)
+-++|+++ |||+|++||.+.||+++ +-.||.++++|++|++|.||+-
T Consensus 686 vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylg 739 (752)
T KOG0515|consen 686 VYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLG 739 (752)
T ss_pred eEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhh
Confidence 44455554 99999999999999984 3579999999999999999974
No 30
>KOG3875|consensus
Probab=97.57 E-value=2e-05 Score=78.79 Aligned_cols=51 Identities=29% Similarity=0.367 Sum_probs=40.5
Q ss_pred CccccccccC----CccccCCCCEEEEEEecC-----CCeeEEEE--CCeeeEecCCCeecc
Q psy9761 369 GWVPKNYIEK----DELSFQESAVIYVLKKND-----DGWWEGVM--DGITGLFPGNYVEPC 419 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~-----~GWweG~~--~G~~G~FPsnYVe~i 419 (420)
.+++++|++. .||+|++||+|.|+.|.+ ..||.... +|.+||||.|||+.|
T Consensus 269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi 330 (362)
T KOG3875|consen 269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII 330 (362)
T ss_pred HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence 3466777665 899999999999998843 45777765 467899999999876
No 31
>KOG3601|consensus
Probab=97.53 E-value=4.3e-05 Score=72.94 Aligned_cols=50 Identities=32% Similarity=0.601 Sum_probs=44.4
Q ss_pred CccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeec
Q psy9761 369 GWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~ 418 (420)
.|+.+.|+.. +||.|++||+|.|+...+.-||.|.+.|+.|+||++||..
T Consensus 164 ~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p 217 (222)
T KOG3601|consen 164 YYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAP 217 (222)
T ss_pred hhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccccc
Confidence 4566666644 9999999999999999999999999999999999999964
No 32
>KOG1702|consensus
Probab=97.48 E-value=8e-05 Score=70.89 Aligned_cols=49 Identities=37% Similarity=0.631 Sum_probs=42.6
Q ss_pred cccccccC----CccccCCCCEEEEEEecCCCeeEEEE--CCeeeEecCCCeecc
Q psy9761 371 VPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEPC 419 (420)
Q Consensus 371 v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~--~G~~G~FPsnYVe~i 419 (420)
+.+.|++. ||++|.-||.|..+...++||..|.+ +|.+|..|+||||.|
T Consensus 210 yra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v 264 (264)
T KOG1702|consen 210 YRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV 264 (264)
T ss_pred chhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence 45555554 99999999999999999999999987 899999999999865
No 33
>KOG3632|consensus
Probab=97.45 E-value=6.9e-05 Score=83.88 Aligned_cols=51 Identities=33% Similarity=0.541 Sum_probs=44.2
Q ss_pred CccccccccC------------CccccCCCCEEEEEE-ecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 369 GWVPKNYIEK------------DELSFQESAVIYVLK-KNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 369 ~~v~~~Y~~~------------dELSf~kGDiI~Vl~-k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
..|.++|||. .||.|++|+||.|+. ++.+|||.|+++|+.|++|+|+|.++
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~ 1202 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQ 1202 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccc
Confidence 4466666665 899999999999997 47799999999999999999999875
No 34
>KOG2222|consensus
Probab=97.19 E-value=8.9e-05 Score=77.91 Aligned_cols=51 Identities=27% Similarity=0.560 Sum_probs=43.5
Q ss_pred CccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 369 GWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
..++++.++. +||.|++.|+|.|+...+.-+|.|+.||.+||||+-|||.+
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvell 603 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELL 603 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHH
Confidence 3455554443 89999999999999998899999999999999999999864
No 35
>KOG4773|consensus
Probab=96.83 E-value=0.00017 Score=73.16 Aligned_cols=41 Identities=27% Similarity=0.635 Sum_probs=39.1
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
.||.|.+||++.++.+++.+||+|+..|.+||||..|++.+
T Consensus 190 ~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 190 LELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQL 230 (386)
T ss_pred ceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhh
Confidence 89999999999999999999999999999999999998764
No 36
>KOG1451|consensus
Probab=96.75 E-value=0.0009 Score=72.00 Aligned_cols=41 Identities=46% Similarity=0.907 Sum_probs=38.0
Q ss_pred CccccCCCCEEEEEE-ecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVLK-KNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl~-k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
.||+|..|.++.-+. .+++||..|+++|++|++|+||||.+
T Consensus 771 selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l 812 (812)
T KOG1451|consen 771 SELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL 812 (812)
T ss_pred ccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence 889999999998877 68899999999999999999999975
No 37
>KOG1924|consensus
Probab=96.67 E-value=0.0059 Score=67.72 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=5.1
Q ss_pred ccCCCCCCCCC
Q psy9761 325 QQRSSSPPLPP 335 (420)
Q Consensus 325 p~~~~~pPPPP 335 (420)
.++.+-+||||
T Consensus 589 ~g~~Gg~ppPP 599 (1102)
T KOG1924|consen 589 GGFLGGPPPPP 599 (1102)
T ss_pred CCCCCCCCCCC
Confidence 45555544333
No 38
>KOG4278|consensus
Probab=96.62 E-value=0.0013 Score=71.78 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=44.9
Q ss_pred CCCCCccccccccC----CccccCCCCEEEEEEec-CCCeeEEEE-CCeeeEecCCCeecc
Q psy9761 365 QDLPGWVPKNYIEK----DELSFQESAVIYVLKKN-DDGWWEGVM-DGITGLFPGNYVEPC 419 (420)
Q Consensus 365 ~~~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~-~~GWweG~~-~G~~G~FPsnYVe~i 419 (420)
.+++..|.++||+- +.|++.+||.+.|+.-+ ++.|+|.+. ||. ||+|+||+..+
T Consensus 87 endpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPv 146 (1157)
T KOG4278|consen 87 ENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPV 146 (1157)
T ss_pred cCCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccc
Confidence 44677899999875 77999999999999875 566999997 555 99999998754
No 39
>KOG2546|consensus
Probab=96.19 E-value=0.00015 Score=75.21 Aligned_cols=98 Identities=22% Similarity=0.232 Sum_probs=77.8
Q ss_pred HHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---
Q psy9761 20 LDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQI--- 96 (420)
Q Consensus 20 ~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qi--- 96 (420)
.....+++ +++|||+ |+|.+.|+.|+++.|+||+.+| +.|.++.++..-.+.+.|......++-++.+.--|
T Consensus 213 pp~vP~~Y-~~~~~~~-~~~~s~~rm~~~n~~~~t~~~~---~~~~gt~~~sg~g~~g~q~a~~~~~~p~~~~~~~~q~~ 287 (483)
T KOG2546|consen 213 PPLVPSDY-APDYTEK-YLHQSPKRMASDNSKDYTVKAL---VDHLGTVESSGGGLFGHQNADGSTAPPRASCVQAIQPP 287 (483)
T ss_pred CCCCcccc-ccccccc-ccccchhhhhhhcccccccccc---cccccccccccccccCCcCCCCCCCCCccccccccCCc
Confidence 34456777 9999999 9999999999999999999999 88999999999999999999999988887776321
Q ss_pred ------------ceeeccccccccceeeCCCCCCCCCCc
Q psy9761 97 ------------GVLTANKTTNRQYKIIAPANPEKPIKY 123 (420)
Q Consensus 97 ------------g~lt~~k~~~r~~ki~~p~~~e~~~~y 123 (420)
+.-+..|...|++++.| .....++.|
T Consensus 288 ~~~~~~~~~~~t~~~~~s~~~lr~~q~~a-~~p~q~~~~ 325 (483)
T KOG2546|consen 288 VCVCSFHQQLLTCRGYISKPGLRQQQLLA-VIPLQPKHP 325 (483)
T ss_pred eeeeecccCccccccccccccccchhhhc-ccccccCCC
Confidence 22233467788888887 444444443
No 40
>KOG3771|consensus
Probab=95.94 E-value=0.0035 Score=66.03 Aligned_cols=51 Identities=25% Similarity=0.141 Sum_probs=40.9
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEe-cCCCeeEEEECCeeeEecCCCee
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVE 417 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k-~~~GWweG~~~G~~G~FPsnYVe 417 (420)
....|.+.|+++ |||+|..||+|+|+.. +.+.||+|++.|..+-|+.+||.
T Consensus 399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 399 FLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred CccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence 344577777776 9999999999999986 45789999998887777777764
No 41
>KOG3775|consensus
Probab=95.81 E-value=0.0044 Score=63.81 Aligned_cols=41 Identities=34% Similarity=0.658 Sum_probs=38.2
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEE--CCeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~--~G~~G~FPsnYVe~i 419 (420)
|||.|..||-|+|-...++-|++|.+ .|..|+||+.|+.+|
T Consensus 277 DELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~ev 319 (482)
T KOG3775|consen 277 DELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEV 319 (482)
T ss_pred ceeeeecCCeeEeeecccchhhccccccccccccccceeEEec
Confidence 99999999999999989999999996 799999999998765
No 42
>KOG4575|consensus
Probab=95.75 E-value=0.0072 Score=65.68 Aligned_cols=51 Identities=31% Similarity=0.560 Sum_probs=38.3
Q ss_pred CCccccccccC----CccccCCCCEEEEEEecCCCeeEEEE-C-CeeeEecCCCeec
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVM-D-GITGLFPGNYVEP 418 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~-~-G~~G~FPsnYVe~ 418 (420)
+-.|++.|.-. ++|.|.+||+|.++...++-||-+.. | ...|+||+|||..
T Consensus 8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~dgkwwi~lhrNk~~~g~fpsNFvhc 64 (874)
T KOG4575|consen 8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIEDGKWWILLHRNKDEDGLFPSNFVHC 64 (874)
T ss_pred CceEEeeccCCCCcccccceecccceeEEeeccceeeeeeeecccccccCcccceee
Confidence 34566666433 89999999999999987666666665 3 3469999999954
No 43
>KOG4429|consensus
Probab=95.43 E-value=0.0058 Score=61.22 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=42.7
Q ss_pred cccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 371 VPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 371 v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
+.+.|.+. +||...+||++.+-++.+.|||.|++.|.-|.|++.|||++
T Consensus 366 cdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 366 CDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred hhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence 44455443 99999999999999999999999999999999999999874
No 44
>KOG0609|consensus
Probab=95.37 E-value=0.0053 Score=65.70 Aligned_cols=40 Identities=25% Similarity=0.713 Sum_probs=34.2
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEEC-----CeeeEecCCCeec
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMD-----GITGLFPGNYVEP 418 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~-----G~~G~FPsnYVe~ 418 (420)
..|.|.+|||+.|+.++|..||.++.. +..|++|+...++
T Consensus 236 agl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe 280 (542)
T KOG0609|consen 236 AGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE 280 (542)
T ss_pred cCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence 669999999999999999999998863 4679999876543
No 45
>KOG3632|consensus
Probab=94.52 E-value=0.019 Score=65.12 Aligned_cols=40 Identities=40% Similarity=0.839 Sum_probs=37.5
Q ss_pred CccccCCCCEEEEEEe-cCCCeeEEEECCeeeEecCCCeec
Q psy9761 379 DELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVEP 418 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k-~~~GWweG~~~G~~G~FPsnYVe~ 418 (420)
.||.|+.||||.|..+ +++|++.|.++|..|++|+||++.
T Consensus 1266 AelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1266 AELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEA 1306 (1335)
T ss_pred eeeccccCCeEEeeccccCCcccccccCCccCccccccccC
Confidence 7899999999999988 678999999999999999999985
No 46
>KOG0197|consensus
Probab=94.51 E-value=0.0094 Score=63.39 Aligned_cols=50 Identities=30% Similarity=0.596 Sum_probs=42.1
Q ss_pred CccccccccC----CccccCCCCE-EEEEEecCCCeeEEEE--CCeeeEecCCCeec
Q psy9761 369 GWVPKNYIEK----DELSFQESAV-IYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418 (420)
Q Consensus 369 ~~v~~~Y~~~----dELSf~kGDi-I~Vl~k~~~GWweG~~--~G~~G~FPsnYVe~ 418 (420)
..+.+.|++. ++|+|.+||+ ..+++..+..||..+. .+..|++|+|||..
T Consensus 12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~ 68 (468)
T KOG0197|consen 12 TIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVAR 68 (468)
T ss_pred ceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeec
Confidence 4466677665 8999999999 7788888899999886 68899999999985
No 47
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=94.35 E-value=0.073 Score=39.38 Aligned_cols=36 Identities=28% Similarity=0.631 Sum_probs=30.1
Q ss_pred ccCCCCEEEEEEecCCC-eeEE-EECCeeeEecCCCee
Q psy9761 382 SFQESAVIYVLKKNDDG-WWEG-VMDGITGLFPGNYVE 417 (420)
Q Consensus 382 Sf~kGDiI~Vl~k~~~G-WweG-~~~G~~G~FPsnYVe 417 (420)
.+..|+.|.|+....++ |++. ..+|.+||+...||+
T Consensus 18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence 36899999999987665 9999 459999999999985
No 48
>KOG3557|consensus
Probab=92.96 E-value=0.02 Score=62.51 Aligned_cols=51 Identities=31% Similarity=0.575 Sum_probs=43.0
Q ss_pred CCccccccccC----CccccCCCCEEEEEEecCCCeeEEEE-CCeeeEecCCCeecc
Q psy9761 368 PGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVM-DGITGLFPGNYVEPC 419 (420)
Q Consensus 368 ~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~-~G~~G~FPsnYVe~i 419 (420)
..|+..+|++. .||+..+||++.|+.. .-+||+++. .|+.|++|.|-+..+
T Consensus 500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~ 555 (721)
T KOG3557|consen 500 KKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPL 555 (721)
T ss_pred ceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccC
Confidence 34788889876 9999999999999975 467999997 799999999877654
No 49
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=92.39 E-value=0.2 Score=37.84 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=29.9
Q ss_pred ccCCCCEEEEEEecCCCeeEEEEC-CeeeEecCCCee
Q psy9761 382 SFQESAVIYVLKKNDDGWWEGVMD-GITGLFPGNYVE 417 (420)
Q Consensus 382 Sf~kGDiI~Vl~k~~~GWweG~~~-G~~G~FPsnYVe 417 (420)
.+.+|+.+.|+.+.+++|+.-+.. |..||++..++.
T Consensus 26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence 367999999999866689999984 999999876653
No 50
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=91.37 E-value=0.27 Score=41.30 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=29.5
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEE-CCeeeEecCCCee
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVM-DGITGLFPGNYVE 417 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~-~G~~G~FPsnYVe 417 (420)
-+|.++.||++.|++..+++=|.|+. .|+-|+++.+++.
T Consensus 31 kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~ 70 (89)
T PF14603_consen 31 KDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLL 70 (89)
T ss_dssp TB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS-
T ss_pred ccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHcc
Confidence 68999999999999999999999998 8999999988763
No 51
>KOG0199|consensus
Probab=91.09 E-value=0.18 Score=56.44 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=34.8
Q ss_pred cCCccccCCCCEEEEEEec-CCCeeEEEE--CCeeeEecCCCee
Q psy9761 377 EKDELSFQESAVIYVLKKN-DDGWWEGVM--DGITGLFPGNYVE 417 (420)
Q Consensus 377 ~~dELSf~kGDiI~Vl~k~-~~GWweG~~--~G~~G~FPsnYVe 417 (420)
+.+.|.|++||.|.||+.. .+-||.|.. +++.|.||.+-|.
T Consensus 387 ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 387 EPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred CCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence 3399999999999999974 467999975 8999999988765
No 52
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=89.04 E-value=0.75 Score=34.31 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=28.8
Q ss_pred cccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCe
Q psy9761 381 LSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYV 416 (420)
Q Consensus 381 LSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYV 416 (420)
..+.+|..+.|+ .+.++|++-+.+|.+||+....|
T Consensus 19 ~~l~~g~~v~v~-~~~~~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVI-ECRGGWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEE-EccCCeEEEEECCeEEeEEeeec
Confidence 446888888888 45778999999999999987664
No 53
>KOG3725|consensus
Probab=88.59 E-value=0.1 Score=51.72 Aligned_cols=49 Identities=27% Similarity=0.332 Sum_probs=41.0
Q ss_pred cccccccC----CccccCCCCEEEEEEe--cCCCeeEEEECCeeeEecCCCeecc
Q psy9761 371 VPKNYIEK----DELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 371 v~~~Y~~~----dELSf~kGDiI~Vl~k--~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
++.+||++ .||++...|+|.|... .|.+|..|+..++.|-+|..|+|.+
T Consensus 320 ArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL 374 (375)
T KOG3725|consen 320 ARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL 374 (375)
T ss_pred eeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence 34444444 8999999999999876 6788999999999999999999865
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=88.35 E-value=0.49 Score=45.47 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEEecC-CCeeEEEE-CCeeeEecCCCeec
Q psy9761 382 SFQESAVIYVLKKND-DGWWEGVM-DGITGLFPGNYVEP 418 (420)
Q Consensus 382 Sf~kGDiI~Vl~k~~-~GWweG~~-~G~~G~FPsnYVe~ 418 (420)
++..|+.|.|++..+ +||+..+. +|++||+...|+..
T Consensus 49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~ 87 (206)
T PRK10884 49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLST 87 (206)
T ss_pred EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcC
Confidence 478999999999865 67999886 89999999998754
No 55
>KOG3812|consensus
Probab=86.63 E-value=0.17 Score=52.01 Aligned_cols=35 Identities=26% Similarity=0.760 Sum_probs=30.6
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEE--CC-eeeEecC
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVM--DG-ITGLFPG 413 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~--~G-~~G~FPs 413 (420)
..++|...|.|.|-+|.+++||-|++ .| ..||+|+
T Consensus 80 ~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs 117 (475)
T KOG3812|consen 80 HAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS 117 (475)
T ss_pred ceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence 56899999999999999999999997 44 5699996
No 56
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=86.44 E-value=3 Score=30.69 Aligned_cols=46 Identities=9% Similarity=0.173 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 50 TKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 50 tk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.++-..+.|......++.++..|-.+++.|...|.+++..+.....
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~ 48 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADV 48 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999999999999999999887654
No 57
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=84.92 E-value=0.84 Score=34.66 Aligned_cols=23 Identities=35% Similarity=0.921 Sum_probs=21.0
Q ss_pred ccCCCCEEEEEEecCCCeeEEEE
Q psy9761 382 SFQESAVIYVLKKNDDGWWEGVM 404 (420)
Q Consensus 382 Sf~kGDiI~Vl~k~~~GWweG~~ 404 (420)
.|++||.|.+....+++||+|+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V 24 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVV 24 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEE
Confidence 48999999999988999999986
No 58
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=84.41 E-value=7.2 Score=29.03 Aligned_cols=50 Identities=16% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 46 ALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 46 aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
...+..+-....|...+..+..++.+|-.+|+.|...|.+++..+.....
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~ 54 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADV 54 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45566777788899999999999999999999999999999998877654
No 59
>KOG3565|consensus
Probab=80.29 E-value=0.46 Score=52.83 Aligned_cols=54 Identities=20% Similarity=0.409 Sum_probs=43.8
Q ss_pred CCCCccccccccC----CccccCCCCEEEEEEec-CCCeeEEE--ECCeeeEecCCCeecc
Q psy9761 366 DLPGWVPKNYIEK----DELSFQESAVIYVLKKN-DDGWWEGV--MDGITGLFPGNYVEPC 419 (420)
Q Consensus 366 ~~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~-~~GWweG~--~~G~~G~FPsnYVe~i 419 (420)
.....+.+.|.+. +++++..|+++.+++.+ ++||=+++ .+|..|.||.+||+.+
T Consensus 576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCccccccc
Confidence 3445556666554 89999999999999874 68999999 6899999999999764
No 60
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=79.93 E-value=13 Score=37.67 Aligned_cols=90 Identities=13% Similarity=0.221 Sum_probs=62.5
Q ss_pred HHHHHHhhcchhhH-HHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 3 ELASLLTTEIPEGR-TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTA 81 (420)
Q Consensus 3 el~~~~~~~ip~~r-~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~ 81 (420)
+|+.++.+.--.++ ..|-+-++.|..++..=++. ..+..++++++.++ +.|-+.+-+|..+-..+-.-++.+.+
T Consensus 92 ~le~~~~~~~~~gl~~~l~~ff~a~~~ls~~P~~~----~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~ 166 (322)
T TIGR02492 92 QIENLFNDLDESGLSTYLNNFFNALQELAKNPDSE----ALRQAVLESAQALA-NSFNQTSNELQDLRKGINAEIKSAVT 166 (322)
T ss_pred HHHHHhCCCCcCcHHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443221244 45556666677666655433 34777888888876 77888888888888888888888888
Q ss_pred HHHHHHHhhhhhhh-hc
Q psy9761 82 QLEEMESQMNHIGQ-IG 97 (420)
Q Consensus 82 ~~~~~e~~i~~l~q-ig 97 (420)
+|+.+-.+|..|++ |.
T Consensus 167 ~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 167 EINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888887 53
No 61
>KOG2996|consensus
Probab=79.86 E-value=0.74 Score=50.38 Aligned_cols=39 Identities=41% Similarity=0.855 Sum_probs=31.6
Q ss_pred cccCCCCEEEEEEe-cCCCeeEEEE--CCeeeEecCCCeecc
Q psy9761 381 LSFQESAVIYVLKK-NDDGWWEGVM--DGITGLFPGNYVEPC 419 (420)
Q Consensus 381 LSf~kGDiI~Vl~k-~~~GWweG~~--~G~~G~FPsnYVe~i 419 (420)
|.|..||++..++. .+..||+|+. .+..||||++-|..+
T Consensus 627 l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~ 668 (865)
T KOG2996|consen 627 LVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPC 668 (865)
T ss_pred eEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcC
Confidence 77899999988876 3567999998 456799999887653
No 62
>KOG3671|consensus
Probab=79.81 E-value=63 Score=35.31 Aligned_cols=11 Identities=18% Similarity=0.658 Sum_probs=5.0
Q ss_pred CCCCCCccccC
Q psy9761 127 PIDLNALDDIG 137 (420)
Q Consensus 127 pi~y~~ld~vG 137 (420)
|-+|.-+..||
T Consensus 239 Ptnf~h~~hVg 249 (569)
T KOG3671|consen 239 PTNFPHIPHVG 249 (569)
T ss_pred CCCCccccccC
Confidence 44444444443
No 63
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=79.45 E-value=2.5 Score=40.70 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEEecCC-CeeEEEE-CCeeeEecCCCeec
Q psy9761 381 LSFQESAVIYVLKKNDD-GWWEGVM-DGITGLFPGNYVEP 418 (420)
Q Consensus 381 LSf~kGDiI~Vl~k~~~-GWweG~~-~G~~G~FPsnYVe~ 418 (420)
=++++||.+.|+.+... ||...+. +|+.|||+..++..
T Consensus 48 ~~i~~Ge~vtvl~~~~~~~~~qI~~~~g~t~wi~~~~lt~ 87 (205)
T COG3103 48 GSIKAGEKVTVLGTDGNTGYYQIRDSSGRTGWILSKNLTS 87 (205)
T ss_pred eEecCCcEEEEEEEcCcccEEEEEecCCceEEEechhhcc
Confidence 45799999999998655 8999997 79999999887754
No 64
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=79.36 E-value=2.2 Score=45.93 Aligned_cols=38 Identities=26% Similarity=0.525 Sum_probs=32.4
Q ss_pred cccCCCCEEEEEEecCCCeeEEEE-CCeeeEecCCCeec
Q psy9761 381 LSFQESAVIYVLKKNDDGWWEGVM-DGITGLFPGNYVEP 418 (420)
Q Consensus 381 LSf~kGDiI~Vl~k~~~GWweG~~-~G~~G~FPsnYVe~ 418 (420)
-++.+|+.|.|+...++|||.-+. +|++||+=+.||..
T Consensus 103 gsl~~G~~V~Vl~~~~ngW~kI~~~~GktGwV~~~YLs~ 141 (481)
T PRK13914 103 TSIKGGTKVTVETTESNGWHKITYNDGKTGFVNGKYLTD 141 (481)
T ss_pred eeecCCCEEEEeecccCCeEEEEcCCCCEEEEecccccC
Confidence 357899999998756779999998 59999999999864
No 65
>KOG3601|consensus
Probab=77.93 E-value=0.64 Score=44.94 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=42.0
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeec
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~ 418 (420)
...||-..|... ..+..+.|++|..+++...||+.|.+++..|+|+.+||+.
T Consensus 57 ~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrp 112 (222)
T KOG3601|consen 57 PHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRP 112 (222)
T ss_pred cccceecccccchhhhhhhccCcchhhhhhhhcCcccccccccCCCCceecccccc
Confidence 345555555443 4566788999999999999999999999999999999954
No 66
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=77.88 E-value=10 Score=28.68 Aligned_cols=41 Identities=10% Similarity=0.216 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 55 TQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 55 ~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.+.|.+-+..++.++..|-.+|+.|...|.+|+..|.....
T Consensus 6 l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~ 46 (63)
T PF05739_consen 6 LDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANE 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999987665
No 67
>KOG4384|consensus
Probab=75.88 E-value=1.7 Score=44.98 Aligned_cols=41 Identities=27% Similarity=0.512 Sum_probs=38.8
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
++|.+++||+|.++++..-|-|+|-++++.|.|..-||..+
T Consensus 153 d~lk~~~~~~i~~~~~~~~~~~~g~~~~kv~~f~~~~v~~~ 193 (361)
T KOG4384|consen 153 DSLKIKKGDIIDIIEKPPMGTWLGLLNNKVGSFKFIYVDVI 193 (361)
T ss_pred cchhhcccchhhccccCccccccccccCcccccccceeccc
Confidence 89999999999999999999999999999999999998765
No 68
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=72.24 E-value=27 Score=37.87 Aligned_cols=74 Identities=8% Similarity=0.232 Sum_probs=59.0
Q ss_pred HHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 17 TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
..|-+-+..|..++..=++. ..+..++++++.++ +.+-+++-+|+.+-..+-+-++.+.++|+++-.+|..|+.
T Consensus 119 ~~l~~ff~a~~~la~~P~~~----~~r~~vl~~a~~La-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~ 192 (507)
T PRK07739 119 KVLDQFWNSLQELSKNPENL----GARSVVRQRAQALA-ETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNK 192 (507)
T ss_pred HHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655433 34778999999887 6789999999999999999999999999999999999987
No 69
>KOG0040|consensus
Probab=70.41 E-value=0.15 Score=60.47 Aligned_cols=53 Identities=21% Similarity=0.429 Sum_probs=46.3
Q ss_pred CCCccccccccC----CccccCCCCEEEEEEecCCCeeEEEECCeeeEecCCCeecc
Q psy9761 367 LPGWVPKNYIEK----DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419 (420)
Q Consensus 367 ~~~~v~~~Y~~~----dELSf~kGDiI~Vl~k~~~GWweG~~~G~~G~FPsnYVe~i 419 (420)
...++-++|++. .|.++++||++..+..+.-+||..+++.+.|++|+.||+.+
T Consensus 967 g~~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~ 1023 (2399)
T KOG0040|consen 967 GKECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRL 1023 (2399)
T ss_pred HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHh
Confidence 455677778775 88999999999999988999999999999999999999875
No 70
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=70.24 E-value=32 Score=36.71 Aligned_cols=89 Identities=13% Similarity=0.128 Sum_probs=63.1
Q ss_pred HHHHHHhhcchhhHHH-HHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 3 ELASLLTTEIPEGRTS-LLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTA 81 (420)
Q Consensus 3 el~~~~~~~ip~~r~~-L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~ 81 (420)
+|+.++... -.++.. |-+-++.|..++.-=++. ..++.++++++.++ +.+-++..+|..+-..+-+-++.+.+
T Consensus 93 ~le~~~~~~-~~gl~~~l~~ff~a~~~la~~P~~~----~~r~~vl~~a~~la-~~~n~~~~~l~~~~~~~~~~i~~~V~ 166 (456)
T PRK07191 93 ALELVVGNK-STSLATGLNNFFSALSAATQLPDSP----PMRQQVIESANAMA-LRFNNVNNFIVQQKKSIGQQRDATVK 166 (456)
T ss_pred HHHHHhCCC-CCchHHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555432 334433 444455566666544322 34777888888887 78888999999999999999999999
Q ss_pred HHHHHHHhhhhhhh-hc
Q psy9761 82 QLEEMESQMNHIGQ-IG 97 (420)
Q Consensus 82 ~~~~~e~~i~~l~q-ig 97 (420)
+|+++-.+|..|+. |.
T Consensus 167 ~iN~ll~~Ia~LN~~I~ 183 (456)
T PRK07191 167 QINSLTRSIADYNQKIL 183 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988 53
No 71
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.49 E-value=36 Score=34.02 Aligned_cols=80 Identities=25% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCC----------------------chh-----------HHHHHHH
Q psy9761 4 LASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQA----------------------DNK-----------RMALEET 50 (420)
Q Consensus 4 l~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~----------------------~dk-----------~~aleet 50 (420)
|..|+|++||+-.+..+.. .++.-=-||+...|-++ ..| ..=||+.
T Consensus 112 L~~L~e~dL~~I~k~rKkL-~k~~LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~ 190 (257)
T cd07620 112 LNKLSEEDLPEILKNKKQF-AKLTTDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQC 190 (257)
T ss_pred HHHhHHhhHHHHHHHHHHH-HhHHhhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 5667777766544443332 22322347888888321 233 2346777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 51 KNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLE 84 (420)
Q Consensus 51 k~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~ 84 (420)
|+-+...|-+.+--=...|+.|.++++.|.+=-+
T Consensus 191 kd~~~a~Mynfl~kE~e~a~~l~~lveaQ~~YHr 224 (257)
T cd07620 191 KDQYSADLYHFATKEDSYANYFIRLLELQAEYHK 224 (257)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877777778888888888875433
No 72
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=66.96 E-value=55 Score=32.47 Aligned_cols=82 Identities=22% Similarity=0.211 Sum_probs=48.3
Q ss_pred HHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCc-----------hh-----------HHHHHHHHHHHHHHHHH
Q psy9761 3 ELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQAD-----------NK-----------RMALEETKNYTTQSLAS 60 (420)
Q Consensus 3 el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~-----------dk-----------~~aleetk~y~~qsLas 60 (420)
-|..+++.+|++.-++.+.....-.. -|+|..+|-.+. .| +.=||+.|+-.++.+.+
T Consensus 111 PL~~~le~dlk~I~K~RkkLe~~RLD-~D~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~dm~~ 189 (246)
T cd07618 111 PLNQLAEVEIPNIQKQRKQLAKLVLD-WDSARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAADMYN 189 (246)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhHHhh-HHHHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777665544433332222222 288999984431 22 33577788877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 61 VAYQINTLAYNFLQLLDLQTAQLEE 85 (420)
Q Consensus 61 VayqIn~lA~~ll~lLd~Q~~~~~~ 85 (420)
+.--=-..+.+|+.+++.|.+=-++
T Consensus 190 ~l~~e~e~~~~l~~lv~aQ~eYHr~ 214 (246)
T cd07618 190 FASKEGEYAKFFVLLLEAQADYHRK 214 (246)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 7644445677788888887654333
No 73
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=66.61 E-value=23 Score=34.81 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=45.0
Q ss_pred HHHHHhhcchh---hHHHHHHhHHhHHHHHHHHhhhccCC--chhHH-----------HHHHHHHHHHHHHHHHHH-HHH
Q psy9761 4 LASLLTTEIPE---GRTSLLDSHSNLEKVAEYCEGNYFQA--DNKRM-----------ALEETKNYTTQSLASVAY-QIN 66 (420)
Q Consensus 4 l~~~~~~~ip~---~r~~L~~~~~nL~~vA~YCe~nY~~~--~dk~~-----------aleetk~y~~qsLasVay-qIn 66 (420)
|+.+|+.+|.. +|+.|...+=. -|+|..++-.+ ++++. -||++++-|...+-+|.. +++
T Consensus 124 L~~~le~dik~i~k~RKkLe~rRLd----yD~~K~r~~kAk~~~~~~~~e~elr~ae~efees~E~a~~~m~~i~~~~~e 199 (229)
T cd07616 124 LRNFIEGDYKTITKERKLLQNKRLD----LDAAKTRLKKAKVAEARAAAEQELRITQSEFDRQAEITRLLLEGISSTHAH 199 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCcchhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhcChH
Confidence 45566655554 45555444322 28999998542 23332 288899999988888875 333
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy9761 67 TLAYNFLQLLDLQTAQL 83 (420)
Q Consensus 67 ~lA~~ll~lLd~Q~~~~ 83 (420)
. ...|..|++.|.+=-
T Consensus 200 ~-~~~L~~lv~AQl~Yh 215 (229)
T cd07616 200 H-LRCLNDFVEAQMTYY 215 (229)
T ss_pred H-HHHHHHHHHHHHHHH
Confidence 2 345667777776433
No 74
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=66.01 E-value=40 Score=37.57 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=57.8
Q ss_pred HHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-h
Q psy9761 18 SLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ-I 96 (420)
Q Consensus 18 ~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q-i 96 (420)
.|.+-+..|..++.-=++. ..++.+|++++.++ +.+-+++-+|+.+-..+.+-|+.+.++|+.+-.+|..|+. |
T Consensus 113 ~l~~ff~al~~ls~~P~~~----~~R~~vl~~a~~L~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI 187 (613)
T PRK08471 113 DLQDYFNAWNDFASNPKDS----AQKQALAQKTETLT-NNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQI 187 (613)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666655443 23667888888877 7888999999999999999999999999999999999888 5
Q ss_pred c
Q psy9761 97 G 97 (420)
Q Consensus 97 g 97 (420)
-
T Consensus 188 ~ 188 (613)
T PRK08471 188 K 188 (613)
T ss_pred H
Confidence 4
No 75
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=65.36 E-value=44 Score=36.45 Aligned_cols=55 Identities=5% Similarity=0.129 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hce
Q psy9761 43 KRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ-IGV 98 (420)
Q Consensus 43 k~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q-ig~ 98 (420)
++.++++++.++ +.+-+++-+|..+-..+-.-|+.+.++|+.+-.+|..|+. |..
T Consensus 130 r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 130 RQALIGKAEGLV-NQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788887766 6788888888888888888888888888888888888888 643
No 76
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=65.15 E-value=42 Score=37.50 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=51.7
Q ss_pred HHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 18 SLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 18 ~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.|.+-+..|..+|+.=++. ..++.+|++++.++ +.+-++.-++..+-..+..-|+.+.++|+.+-.+|..|++
T Consensus 111 ~L~~Ff~alq~la~~P~~~----aaRq~vl~~A~~La-~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~ 183 (626)
T PRK08871 111 NLNEWFDAVKTLADSPNDL----GARKVVLEKAKLIS-QTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHR 183 (626)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666655533 34667888888775 6677777777777777777777778888877777777776
No 77
>PRK12715 flgK flagellar hook-associated protein FlgK; Provisional
Probab=64.82 E-value=43 Score=37.64 Aligned_cols=74 Identities=7% Similarity=0.136 Sum_probs=50.3
Q ss_pred HHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 17 TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
..|.+-+..|..+|+.=++. ..++.+|++++.++ +.+-++.-+|+.+-..+..-|+.+.++|+.+-.+|..|++
T Consensus 107 ~~l~~ff~a~q~la~~P~~~----~~Rq~vl~~A~~L~-~~fn~~~~~L~~~~~~~n~~I~~~V~~iN~l~~qIA~LN~ 180 (649)
T PRK12715 107 VPLQTFFDSIGQLNSTPDNI----ATRGVVLKQSQLLA-QQFNSLQTKLEEYERNSTLQVTESVKIINRITKELAEVNG 180 (649)
T ss_pred HHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566665544432 34666777777776 6677777777777777777777788888877777777776
No 78
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=64.38 E-value=44 Score=37.52 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=45.9
Q ss_pred HHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 18 SLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 18 ~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.|.+-+..|..+++.=++. ..++.+|++++.++ +.+-+++-+|+.+-..+-.-|+.+.++|+.+-.+|..|++
T Consensus 109 ~L~~Ff~alq~la~~P~~~----~~Rq~vl~~a~~La-~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~ 181 (651)
T PRK06945 109 AITSFFTGLQNVANNPSDP----SARQTMLSNAQTLA-SQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLND 181 (651)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666544322 33556777777766 5666666677777777666677777777766666666665
No 79
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=63.93 E-value=43 Score=37.83 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=51.2
Q ss_pred HHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 18 SLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 18 ~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.|.+-+..|+.+++-=++. .-++.+|++++.++ +.+-+++-+|+.+-..+-+-|+.+.++|+.+-.+|..|++
T Consensus 108 ~L~~Ff~alq~la~~P~s~----aaRq~vl~~A~~La-~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~ 180 (676)
T PRK05683 108 ALQRFFTALQTAAANPTDT----AARQLLLTQAQGLS-KRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNK 180 (676)
T ss_pred HHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555543322 33666888887776 6677888888888888888888888888888888887776
No 80
>PF12731 Mating_N: Mating-type protein beta 1; InterPro: IPR024333 This entry represents a group of homeodomain-containing transcription factor proteins involved in mating [].
Probab=63.69 E-value=58 Score=27.44 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 51 KNYTTQSLASVAYQINTLAYNFLQLLDLQTA 81 (420)
Q Consensus 51 k~y~~qsLasVayqIn~lA~~ll~lLd~Q~~ 81 (420)
..=|..-|.++|.-|.+|+..|+++-+....
T Consensus 58 ~~~T~~~~~~fa~~V~~vss~mv~le~~~~~ 88 (95)
T PF12731_consen 58 SDETLALLHSFASRVATVSSSMVELESAKDA 88 (95)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3345566789999999999999988766543
No 81
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=63.44 E-value=22 Score=27.36 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 60 SVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 60 sVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.+++.+..+|.+++.-|..|.++|.....++..|..
T Consensus 15 ~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~ 50 (66)
T PF12352_consen 15 RMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDS 50 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999999999988877
No 82
>PF08727 P3A: Poliovirus 3A protein like; InterPro: IPR014838 The 3A protein is found in positive-strand RNA viruses. It is a critical component of the poliovirus replication complex, and is also an inhibitor of host cell ER to Golgi transport. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0017111 nucleoside-triphosphatase activity; PDB: 1NG7_A.
Probab=63.20 E-value=5.2 Score=31.13 Aligned_cols=28 Identities=36% Similarity=0.479 Sum_probs=19.1
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhh
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGN 36 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~n 36 (420)
.+.--|.+...|..+-.+= +|.+|||++
T Consensus 12 ~~~P~P~~I~DLL~SV~~~-eV~~YC~~~ 39 (57)
T PF08727_consen 12 EETPPPPAIADLLRSVDSP-EVREYCEEQ 39 (57)
T ss_dssp SS--SS-TTHHHHHHH--H-HHHHHHHHH
T ss_pred cCCCCCHHHHHHHHhcCCH-HHHHHHHHC
Confidence 4666789999999988775 599999975
No 83
>PRK14140 heat shock protein GrpE; Provisional
Probab=61.98 E-value=64 Score=30.83 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=25.1
Q ss_pred HHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhc
Q psy9761 3 ELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNY 37 (420)
Q Consensus 3 el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY 37 (420)
++...++.+|-+..+++.+....|.|+.+=|+ ||
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~e-N~ 70 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFE-NY 70 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44455677777778888888888888887776 55
No 84
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=60.32 E-value=59 Score=36.31 Aligned_cols=72 Identities=8% Similarity=0.161 Sum_probs=42.3
Q ss_pred HHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 19 LLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 19 L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
|.+-+..|+.+|+-=++. .-++.+|++++.++ +.+-++.-+|..+-..+..-|+...++|+.+-.+|..|++
T Consensus 109 l~~ff~alq~la~~P~~~----~~R~~vl~~A~~La-~~f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~ 180 (624)
T PRK12714 109 WSNFFDSTSALSSNASST----AERQSMLDSGNSLA-TRFKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKING 180 (624)
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555433322 23556777777666 4556666666666666666666666666666666666665
No 85
>TIGR01985 phasin_2 phasin. Members of the seed for this model all contain the rest of the components believed to be essential for this system (see the "polyhydroxyalkanoic acid synthesis" property in the GenPropDB). Members of this family score below trusted to another phasin model, TIGR01841 and together may represent a subfamily or broader equivalog.
Probab=59.58 E-value=77 Score=27.46 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=62.5
Q ss_pred hHHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy9761 2 AELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADN-KRMALEETKNYTTQSLASVAYQINTLA--YNFLQLLDL 78 (420)
Q Consensus 2 ~el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~d-k~~aleetk~y~~qsLasVayqIn~lA--~~ll~lLd~ 78 (420)
++++.+.+.-|=.+|+...+-...-+++.+=.|..+-.+.. -+..-.+.-+|+.++|..-..++..|. .++-++++|
T Consensus 4 e~~r~~aek~~~qa~~a~~~~~~~ae~~~~~~~~s~~~~~~g~~~i~~~~l~~~k~~~e~~~~~~~~L~~aKsp~e~~el 83 (112)
T TIGR01985 4 AEFRDFAEKGVDQAKEAFAKFKGAAEETTKALEDAASTSSLTANEISSKTIEFMQANAEAAFDFTQKLVGAKDPSEAFEI 83 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 45566666666666666666666666666666655532211 233555667888888888888888874 688999999
Q ss_pred HHHHHHH-HHHhhhhhhhhc
Q psy9761 79 QTAQLEE-MESQMNHIGQIG 97 (420)
Q Consensus 79 Q~~~~~~-~e~~i~~l~qig 97 (420)
|++-++. +|.-+.+-.+++
T Consensus 84 Qs~~~~~~~e~~~a~ar~~~ 103 (112)
T TIGR01985 84 QSEFLRKQFEAFQAQAKEMG 103 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9987776 455555544433
No 86
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=59.28 E-value=66 Score=34.20 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=53.8
Q ss_pred HHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 19 LLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 19 L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
|-+-++.|..++..=++. .-++.++++++.++ +.+-+++-+|+.+-..+-+-++.+.++|+.+-.+|..|+.
T Consensus 114 l~~ff~a~~~ls~~P~~~----~~r~~vl~~a~~l~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~ 185 (431)
T PRK06799 114 MDGFFNAFREVAKNPEQA----NYYDTLISETGKFT-SQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANK 185 (431)
T ss_pred HHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544432 34667888888775 7788888888888888888888899999999888888887
No 87
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=59.27 E-value=48 Score=32.44 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHhhcch---hhHHHHHHhHHhHHHHHHHHhhhccC--Cch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 4 LASLLTTEIP---EGRTSLLDSHSNLEKVAEYCEGNYFQ--ADN---KRMALEETKNYTTQSLASVAYQINTLAYNFLQL 75 (420)
Q Consensus 4 l~~~~~~~ip---~~r~~L~~~~~nL~~vA~YCe~nY~~--~~d---k~~aleetk~y~~qsLasVayqIn~lA~~ll~l 75 (420)
|+.+++.+|. .+|+.|...+=-| |+|.+++=. .++ -..=|||+++-+...+-+|..-=-.-..+|..|
T Consensus 119 L~~~l~~dik~i~k~RKkLe~rRLd~----D~~K~r~~k~~~eE~~~A~~kfees~E~a~~~M~n~le~e~e~~~~L~~l 194 (223)
T cd07615 119 LQLLQDKDLKEIGHHLKKLEGRRLDF----DYKKKRQGKIPDEEIRQAVEKFEESKELAERSMFNFLENDVEQVSQLSVL 194 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 3444555544 6666666655544 688887621 111 123467777777777766643312223344555
Q ss_pred HHHHH
Q psy9761 76 LDLQT 80 (420)
Q Consensus 76 Ld~Q~ 80 (420)
|+.|.
T Consensus 195 v~AQl 199 (223)
T cd07615 195 IEAAL 199 (223)
T ss_pred HHHHH
Confidence 55554
No 88
>KOG2209|consensus
Probab=58.20 E-value=4.1 Score=41.94 Aligned_cols=70 Identities=20% Similarity=0.291 Sum_probs=51.3
Q ss_pred HHhHHHHHHHHhhhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH--HHHHHHhhhh
Q psy9761 23 HSNLEKVAEYCEGNYFQ--ADNKRMALEETKNYTTQSLASVAYQINTLAYN----FLQLLDLQTAQ--LEEMESQMNH 92 (420)
Q Consensus 23 ~~nL~~vA~YCe~nY~~--~~dk~~aleetk~y~~qsLasVayqIn~lA~~----ll~lLd~Q~~~--~~~~e~~i~~ 92 (420)
-+=|.|+.+|-|.+||- +....+-+|..+--|+=|++.||-|-..++.- |+..+++|-+. ++-+-.+|+|
T Consensus 69 LSFLQRltEyme~~yLi~kAs~~~~p~eRmqyVAAFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSH 146 (445)
T KOG2209|consen 69 LSFLQRLTEYMEHTYLIHKASSQSDPVERMQYVAAFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSH 146 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhcc
Confidence 35689999999999994 44445577887777888899999999988887 66666777653 3444455554
No 89
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=57.83 E-value=83 Score=24.01 Aligned_cols=60 Identities=12% Similarity=0.163 Sum_probs=40.6
Q ss_pred hcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 10 TEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYN 71 (420)
Q Consensus 10 ~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ 71 (420)
..|=.....|++.+..|...+++|...| ++ +-+.+|.+..+-..+.+..+.-.+..++..
T Consensus 14 ~~~~~~~~~l~~~~~~l~~~~~~l~~~W-~G-~a~~af~~~~~~~~~~~~~~~~~L~~~~~~ 73 (86)
T PF06013_consen 14 QQLQAQADELQSQLQQLESSIDSLQASW-QG-EAADAFQDKFEEWNQAFRQLNEALEELSQA 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGB-TS-STSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999997777 44 455666665555555555554444444444
No 90
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.34 E-value=56 Score=36.46 Aligned_cols=72 Identities=10% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 19 LLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 19 L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
|-+-++.|..+++.=++. ..+..++++++.++ +.|-+++-+|+.+-..+-+-|+.+.++|+.+-.+|..|++
T Consensus 121 l~~ff~al~~ls~~P~~~----a~R~~vl~~A~~La-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~ 192 (627)
T PRK06665 121 LDDFWDSWQDLSNYPEGL----AERQVVLERAQSLG-ERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNE 192 (627)
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666544432 34667888888877 7889999999999999999999999999999999999888
No 91
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=57.17 E-value=61 Score=34.87 Aligned_cols=72 Identities=13% Similarity=0.162 Sum_probs=55.5
Q ss_pred HHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 19 LLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 19 L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
|-+-++.|..+++-=++. .-++.++++++.++ +.+-.++.+|..+-..+-+-++.+.++|+++-.+|..|++
T Consensus 104 l~~ff~a~~~la~~P~~~----~~R~~vl~~a~~L~-~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~ 175 (483)
T PRK07521 104 LSDFQAALQTAASSPDNT----TLAQAAVDAAQDLA-NSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANN 175 (483)
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566665544432 33667888888877 7889999999999999999999999999999999999888
No 92
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=51.69 E-value=77 Score=31.06 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=40.8
Q ss_pred cchhhHHHHHHhHHhHHHHHHHHhhhccCC--chhHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy9761 11 EIPEGRTSLLDSHSNLEKVAEYCEGNYFQA--DNKRMA---LEETKNYTTQSLASVAYQ-INTLAYNFLQLLDLQTA 81 (420)
Q Consensus 11 ~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~--~dk~~a---leetk~y~~qsLasVayq-In~lA~~ll~lLd~Q~~ 81 (420)
+|-.+|+.|...+=.+ |||..++=.+ ++=+.| ||++++-+...+-+|-.- | .-+..|..+++.|.+
T Consensus 129 ~i~k~RKkLe~rRLd~----D~~K~r~~k~~eeElr~A~~kFees~E~a~~~M~n~l~~e~-e~~~~L~~fveAQl~ 200 (223)
T cd07613 129 EIQHHLKKLEGRRLDF----DYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNLLEMDI-EQVSQLSALVQAQLE 200 (223)
T ss_pred HHHHHHHHHHHHHHhH----HHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHH
Confidence 3455666666555444 6888887331 122334 899999888887777554 3 333477777777764
No 93
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.85 E-value=1.1e+02 Score=32.38 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 53 YTTQSLASVAYQINTLAYNFLQLLDLQTAQLE 84 (420)
Q Consensus 53 y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~ 84 (420)
|..++|---.|....|-..|.+++|++-++|.
T Consensus 248 ~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~ 279 (395)
T PF10267_consen 248 FILEALQEERYRYERLEEQLNDLTELHQNEIY 279 (395)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555443
No 94
>KOG3065|consensus
Probab=50.01 E-value=54 Score=33.08 Aligned_cols=41 Identities=27% Similarity=0.251 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 54 TTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 54 ~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
+-++| -+||.+.-.+...|.+|+-|.+||.+.|..+..|..
T Consensus 81 t~~~L-~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~ 121 (273)
T KOG3065|consen 81 TRRML-KLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKV 121 (273)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHH
Confidence 33444 368999999999999999999999999999999888
No 95
>KOG3705|consensus
Probab=49.35 E-value=8.6 Score=40.80 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=32.4
Q ss_pred CccccCCCCEEEEEEecCCCeeEEEE--CCeeeEecCCCeec
Q psy9761 379 DELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~~GWweG~~--~G~~G~FPsnYVe~ 418 (420)
+||.++.||+|.|-...=+|.-.|+. .+++|+||+.-|++
T Consensus 524 ~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 524 KEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVRE 565 (580)
T ss_pred cccCcccCCeeeecccccccccccccccccccCCCccceeee
Confidence 89999999999998766566667765 57899999876664
No 96
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.43 E-value=1.8e+02 Score=29.04 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=16.9
Q ss_pred HHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhcc
Q psy9761 4 LASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYF 38 (420)
Q Consensus 4 l~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~ 38 (420)
|..+++.+|+..-++.+.....-.. -|||..+|-
T Consensus 112 L~~~le~dlk~I~k~RK~Le~~RLD-~D~~K~r~~ 145 (248)
T cd07619 112 LYVLAEVEIPNIQKQRKHLAKLVLD-MDSSRTRWQ 145 (248)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhHhh-HHHHHHHHH
Confidence 4556665555443333322222111 289999984
No 97
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.63 E-value=1.8e+02 Score=28.75 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=48.4
Q ss_pred HHHHHhh---cchhhHHHHHHhHHhHHHHHHHHhhhccCCc-------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 4 LASLLTT---EIPEGRTSLLDSHSNLEKVAEYCEGNYFQAD-------------NKRMALEETKNYTTQSLASVAYQINT 67 (420)
Q Consensus 4 l~~~~~~---~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~-------------dk~~aleetk~y~~qsLasVayqIn~ 67 (420)
|+.+|+. +|=.+|+.|.+.+=.| |+|..++-.+. ....-|+++++-|+..|-+|..+.+
T Consensus 138 L~~~L~~d~k~i~k~RKkle~~RLd~----D~~K~~~~ka~~~~k~~~~~~e~E~aEdef~~a~E~a~~~M~~il~~~e- 212 (242)
T cd07600 138 LRETLNTSFQKAHKARKKVEDKRLQL----DTARAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMKEVLDNPE- 212 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccccccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhH-
Confidence 4555553 4555666666666555 78888874431 1334566788889999988866633
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9761 68 LAYNFLQLLDLQTAQLEEMESQMNHIG 94 (420)
Q Consensus 68 lA~~ll~lLd~Q~~~~~~~e~~i~~l~ 94 (420)
....|..+++.| ++=.+.....|.
T Consensus 213 ~i~~L~~fv~AQ---l~Yh~~~~e~L~ 236 (242)
T cd07600 213 PLQLLKELVKAQ---LAYHKTAAELLE 236 (242)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344444444444 444444444443
No 98
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=47.11 E-value=1.9e+02 Score=28.52 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=45.9
Q ss_pred HHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCc---------hh-----------HHHHHHHHHHHHHHHHHHH
Q psy9761 3 ELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQAD---------NK-----------RMALEETKNYTTQSLASVA 62 (420)
Q Consensus 3 el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~---------dk-----------~~aleetk~y~~qsLasVa 62 (420)
-|..+|+.+|++.-++.+.. .+.-=--|+|..+|-.+. .| ..-||++++-++..+-+|.
T Consensus 111 pL~~~le~dik~i~k~RKkL-e~~RLd~D~~k~r~~ka~k~~~~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~~l 189 (244)
T cd07595 111 PLQNILEVEIPNIQKQKKRL-SKLVLDMDSARSRYNAAHKSSGGQGAAAKVDALKDEYEEAELKLEQCRDALATDMYEFL 189 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566665554443332222 222223488999884321 22 2347777777777777776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9761 63 YQINTLAYNFLQLLDLQTA 81 (420)
Q Consensus 63 yqIn~lA~~ll~lLd~Q~~ 81 (420)
..=...+.+|.++++.|.+
T Consensus 190 ~~E~e~~~~l~~lv~aQl~ 208 (244)
T cd07595 190 AKEAEIASYLIDLIEAQRE 208 (244)
T ss_pred HccHHHHHHHHHHHHHHHH
Confidence 6655567778888888764
No 99
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=46.98 E-value=1.2e+02 Score=25.54 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=47.4
Q ss_pred hHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9761 15 GRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIG 94 (420)
Q Consensus 15 ~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~ 94 (420)
.|+.+.+--..-++|.+|-+.-|-.+ .|...+..+ +|+ .|+.-+---+|.|..-.+..=+.|-++|.+|-.+|..|-
T Consensus 3 tRqs~~~~lq~~e~~i~~a~eQ~~~~-~rqehynd~-eYt-~Aq~~LE~a~neL~~l~~sAN~qQREqL~R~rlQlqqLQ 79 (84)
T PF10732_consen 3 TRQSVDEFLQQCEQAIRFAQEQFEEG-SRQEHYNDE-EYT-EAQQMLEEAYNELEKLAHSANPQQREQLHRMRLQLQQLQ 79 (84)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccchH-HHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 35666666666777777777777333 444444332 454 344433333444554455566889999999999888764
No 100
>KOG4677|consensus
Probab=46.92 E-value=1.3e+02 Score=32.66 Aligned_cols=44 Identities=25% Similarity=0.351 Sum_probs=37.1
Q ss_pred HHhhhccCCchh----HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 32 YCEGNYFQADNK----RMALEET---KNYTTQSLASVAYQINTLAYNFLQL 75 (420)
Q Consensus 32 YCe~nY~~~~dk----~~aleet---k~y~~qsLasVayqIn~lA~~ll~l 75 (420)
|-|+--+|+.+| ++-|||+ +.|+..=+++.-.||-+|-+.|.+|
T Consensus 292 ~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~ 342 (554)
T KOG4677|consen 292 YREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDI 342 (554)
T ss_pred HHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999 8899998 4799999999999999998887655
No 101
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=46.25 E-value=71 Score=26.24 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 72 FLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 72 ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
|..-||.|+.+|..++.+|+.|..
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455589999999999999999987
No 102
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=46.08 E-value=1.4e+02 Score=32.97 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 17 TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
..|.+-++.|..+|..-+++ .-|+.+|+.++.++ .+|-..=-++-.|=..+-+-++....+|++|-.+|..|++
T Consensus 111 ~~L~~ff~s~q~la~~P~~~----a~r~~vl~~a~~l~-~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~ 184 (552)
T COG1256 111 TLLNDFFNSLQELASNPSDT----AARQAVLSKAQTLV-NQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNK 184 (552)
T ss_pred HHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566555555543 23455555555544 2233333333333333333344444444444444444444
No 103
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=45.81 E-value=21 Score=29.28 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=18.8
Q ss_pred cccCCCCEEEEEEec------CCCeeEEEE
Q psy9761 381 LSFQESAVIYVLKKN------DDGWWEGVM 404 (420)
Q Consensus 381 LSf~kGDiI~Vl~k~------~~GWweG~~ 404 (420)
|+++.||.+.|-... +.+||-|..
T Consensus 4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V 33 (75)
T PF11302_consen 4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV 33 (75)
T ss_pred cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence 789999998775543 468999885
No 104
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=44.38 E-value=24 Score=26.12 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=33.8
Q ss_pred hHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHH
Q psy9761 15 GRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQ 56 (420)
Q Consensus 15 ~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~q 56 (420)
=|..|.+.+..|.++.-.|....-.-.+|..+|+.|-+|..+
T Consensus 12 RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~ 53 (55)
T PF00010_consen 12 RRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQ 53 (55)
T ss_dssp HHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHH
Confidence 367888889999998888844444667899999999999864
No 105
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=42.04 E-value=2.5e+02 Score=24.86 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh
Q psy9761 45 MALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEE-MESQMNHI 93 (420)
Q Consensus 45 ~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~-~e~~i~~l 93 (420)
..|++.+......+..+.-.|+.....|-+.|+.....|.. ++.++..|
T Consensus 133 ~~l~~~~~~l~~~~~~~~~~i~~~~~~l~~~l~~~~~~l~~~l~~~~~~l 182 (202)
T PF01442_consen 133 ERLEELSEELTERAEELEAKISERLEELRESLEEKAEELKETLDQRIEEL 182 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555556666666666666666666555555532 44443333
No 106
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=41.51 E-value=31 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=18.6
Q ss_pred cchhhHHHHHHhHHhHHHHHHH
Q psy9761 11 EIPEGRTSLLDSHSNLEKVAEY 32 (420)
Q Consensus 11 ~ip~~r~~L~~~~~nL~~vA~Y 32 (420)
.--.++++|+.+..|++++++|
T Consensus 15 ~~~~~~~AL~~~~~nve~A~~~ 36 (37)
T PF00627_consen 15 SREQAREALRACNGNVERAVDW 36 (37)
T ss_dssp -HHHHHHHHHHTTTSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHh
Confidence 3347899999999999999998
No 107
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=41.03 E-value=31 Score=31.68 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=18.2
Q ss_pred HhhcchhhHHHHHHhHHhH-HHHHHHHhhh
Q psy9761 8 LTTEIPEGRTSLLDSHSNL-EKVAEYCEGN 36 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL-~~vA~YCe~n 36 (420)
|+++-..-...|+.--..| .+|++|||.|
T Consensus 48 i~e~Yapq~~~lk~EI~~L~k~vq~yCean 77 (170)
T COG4396 48 IEEEYAPQAAPLKAEIMSLTKRVQAYCEAN 77 (170)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 4444444455565554444 5789999987
No 108
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=40.87 E-value=1.1e+02 Score=27.84 Aligned_cols=73 Identities=14% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHhHHhHHHHHHHHh-----hhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9761 18 SLLDSHSNLEKVAEYCE-----GNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNH 92 (420)
Q Consensus 18 ~L~~~~~nL~~vA~YCe-----~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~ 92 (420)
.+..-..+|++++|||+ -.|+...+.. +++++...+-..-|.-.+..+-..|..-=.-.+.++.++|.+|+.
T Consensus 80 ~~~~i~~~lErigD~~~~ia~~~~~~~~~~~~---~~~~~el~~m~~~v~~~l~~a~~al~~~d~~~~~~i~~~e~~id~ 156 (212)
T TIGR02135 80 SIIKISSDLERIGDYAVNIAKRALRLKEEDAK---PKHLEELEKMGKLALKMLKDALDAFLNKDAELARQVAEMDERVDE 156 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC---CccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q ss_pred h
Q psy9761 93 I 93 (420)
Q Consensus 93 l 93 (420)
+
T Consensus 157 l 157 (212)
T TIGR02135 157 L 157 (212)
T ss_pred H
No 109
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=40.63 E-value=2.6e+02 Score=25.82 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=45.1
Q ss_pred ChHHHHHHhhcchhhHHHHHHhHHhHHHHH-HHHhhhccCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 1 MAELASLLTTEIPEGRTSLLDSHSNLEKVA-EYCEGNYFQADN--KRMALEETKNYTTQSLASVAYQINTLAYNFLQLL 76 (420)
Q Consensus 1 m~el~~~~~~~ip~~r~~L~~~~~nL~~vA-~YCe~nY~~~~d--k~~aleetk~y~~qsLasVayqIn~lA~~ll~lL 76 (420)
|+||..+++.. =...+++.+....|.+.. .+++ .++ |=+|.+..|+|......-++..+-.+...+..-|
T Consensus 5 ~~el~~~~~~~-~~~~~~~~~~l~~l~~ai~~~~~-----~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l 77 (204)
T PF04740_consen 5 VSELHSQAEST-NSSLKELKEQLESLQKAINQFIS-----SESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEAL 77 (204)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc-----CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666543 455555555555555543 2333 333 6689999999999988888887777666555444
No 110
>KOG3856|consensus
Probab=40.45 E-value=35 Score=30.63 Aligned_cols=33 Identities=39% Similarity=0.584 Sum_probs=27.4
Q ss_pred hHHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccC
Q psy9761 2 AELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQ 39 (420)
Q Consensus 2 ~el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~ 39 (420)
+||.+||++ |++|.+...||++-+=--|..||.
T Consensus 17 aEL~elikk-----rqe~eetl~nLe~qIY~~EgsYle 49 (135)
T KOG3856|consen 17 AELAELIKK-----RQELEETLANLERQIYAFEGSYLE 49 (135)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhh
Confidence 578888775 599999999999988777888874
No 111
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=40.33 E-value=2.2e+02 Score=25.89 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 58 LASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 58 LasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
++..+-+|.....++.+..+.|...+..+...+..|.+
T Consensus 140 i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~ 177 (213)
T PF00015_consen 140 IAESVEEISDSIEEISESAEEQSESIEQINESIEEISE 177 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566666666666666666665555554
No 112
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=39.77 E-value=1.6e+02 Score=27.79 Aligned_cols=20 Identities=10% Similarity=0.401 Sum_probs=15.2
Q ss_pred HHHHHhHHhHHHHHHHHhhh
Q psy9761 17 TSLLDSHSNLEKVAEYCEGN 36 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~n 36 (420)
..+.....+|+|++|||++-
T Consensus 90 ~~~~~i~~~lERIgD~~~ni 109 (236)
T PRK11115 90 MAIIKTIADLERIGDVADKI 109 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556678999999999853
No 113
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=39.56 E-value=2.4e+02 Score=26.96 Aligned_cols=62 Identities=19% Similarity=0.292 Sum_probs=43.0
Q ss_pred HHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 17 TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYT--TQSLASVAYQINTLAYNFLQLLDLQTAQLEEM 86 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~--~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~ 86 (420)
+.|.+.+..|+ +||++.| |..-+||=+.|. +.-+++|+.++-++-..-..+|..=.+.+.++
T Consensus 148 ~~v~~~~~ele---~~~~~~~-----r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~~ 211 (219)
T PF08397_consen 148 QDVTERQSELE---EFEKQSL-----REALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQEL 211 (219)
T ss_dssp HHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33444444444 6777776 888889999987 78899999888887777666666555555444
No 114
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=37.59 E-value=1.7e+02 Score=32.39 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=55.8
Q ss_pred hhHHHHHHhHHhHHHHHHHHhhhccCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy9761 14 EGRTSLLDSHSNLEKVAEYCEGNYFQADN---------KRMALEETKNYTTQSLASVAYQINTLAYN---FLQLLDLQTA 81 (420)
Q Consensus 14 ~~r~~L~~~~~nL~~vA~YCe~nY~~~~d---------k~~aleetk~y~~qsLasVayqIn~lA~~---ll~lLd~Q~~ 81 (420)
.-.+++.|.+-|||++.|+-|+ ++.--+ +..+++|.+++-.+.+.|+=.-++.+-+. +-+-|-.+..
T Consensus 400 ~r~~~iid~a~~lE~IgDiie~-l~~~~~kk~~~~~~fse~~~~el~~l~~~~~~n~~~a~~~l~~~D~~~ar~lv~~k~ 478 (533)
T COG1283 400 RRWAEIIDAAINLEHIGDIIER-LLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLVTGDLELARRLVERKK 478 (533)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3457889999999999999998 654222 35688999998888887775555544432 3344566778
Q ss_pred HHHHHHHhhhh
Q psy9761 82 QLEEMESQMNH 92 (420)
Q Consensus 82 ~~~~~e~~i~~ 92 (420)
+++++|.+.+.
T Consensus 479 ~~r~~e~~~~k 489 (533)
T COG1283 479 RVRRLERRSSK 489 (533)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 115
>PRK14143 heat shock protein GrpE; Provisional
Probab=37.29 E-value=3.8e+02 Score=26.55 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=28.5
Q ss_pred HHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHH---HHHHHHHHHHH
Q psy9761 7 LLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMA---LEETKNYTTQS 57 (420)
Q Consensus 7 ~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~a---leetk~y~~qs 57 (420)
-++.+|-...+++.+....+.|+++-+| || |+.+ .++.++|+...
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~Adfe-N~-----RKR~~kE~e~~~~~a~~~ 118 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAADFD-NF-----RKRTSREQEDLRLQLKCN 118 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHH
Confidence 3456667778888888888888776666 34 4443 44555555433
No 116
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=37.23 E-value=3e+02 Score=24.39 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=16.3
Q ss_pred hHHHHHHhHHhHHHHHHHHhhh
Q psy9761 15 GRTSLLDSHSNLEKVAEYCEGN 36 (420)
Q Consensus 15 ~r~~L~~~~~nL~~vA~YCe~n 36 (420)
+...|+....+|.+-+..||..
T Consensus 2 ai~~Lk~~~~~L~~~~~~le~~ 23 (171)
T PF03357_consen 2 AILKLKKTIRRLEKQIKRLEKK 23 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777888777777755
No 117
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=37.05 E-value=2.1e+02 Score=27.58 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhh
Q psy9761 44 RMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQT---AQLEEMESQMNHIGQ 95 (420)
Q Consensus 44 ~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~---~~~~~~e~~i~~l~q 95 (420)
+..+.++.+|..+ +...+-+|+..-..++..++.|- +.|+++-.-|+.|-.
T Consensus 96 ~~l~~~~~~~l~~-~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~ 149 (214)
T PF04344_consen 96 RELAHETDAFLQQ-VEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEE 149 (214)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555433 33334555555555555555552 334444444444433
No 118
>PF08637 NCA2: ATP synthase regulation protein NCA2; InterPro: IPR013946 NCA2 (Nuclear Control of ATPase), is one of the two nuclear genes involved in the control of mitochondrial expression of subunits 6 and 8 of the Fo-F1 ATP synthase in Saccharomyces cerevisiae (Baker's yeast). Mutations in either NCA2 or NCA3 (IPR005556 from INTERPRO) dramatically lower the level of the co-transcript encoding subunits 6 and 8 [, ].
Probab=37.04 E-value=1.4e+02 Score=30.22 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=51.8
Q ss_pred hhHHHHHHhHHhHHHH-HHHHhhhccCCc-hhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 14 EGRTSLLDSHSNLEKV-AEYCEGNYFQAD-NKRMALEE---------TKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQ 82 (420)
Q Consensus 14 ~~r~~L~~~~~nL~~v-A~YCe~nY~~~~-dk~~alee---------tk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~ 82 (420)
..+.+|+.....|+|. .|||++++-... |..+.-++ .|.|=. .|-+ =--|.+..+|.++|=+|.++
T Consensus 65 ~s~~sL~~d~~SLeRMv~dF~~d~~~~~~~~~~~l~~~v~~Gdlt~Vm~~YE~-el~~--Pik~~v~G~LvR~LLIQvQK 141 (290)
T PF08637_consen 65 MSKESLQSDMESLERMVVDFAKDNSPNMPADLEELRQQVREGDLTPVMKRYEK-ELKH--PIKNIVRGDLVRALLIQVQK 141 (290)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHcCCcHHHHHHHHH-HHHh--HHHHHhcccHHHHHHHHHHH
Confidence 4577999999999995 599999985432 11111111 122221 1111 02467888999998888888
Q ss_pred HH-HHHHhhhhhhh
Q psy9761 83 LE-EMESQMNHIGQ 95 (420)
Q Consensus 83 ~~-~~e~~i~~l~q 95 (420)
++ ++|..|+-|.+
T Consensus 142 ~KVD~~~Am~gID~ 155 (290)
T PF08637_consen 142 TKVDVEVAMSGIDK 155 (290)
T ss_pred HHHHHHHHHHHHHH
Confidence 76 48888888888
No 119
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=36.48 E-value=1.6e+02 Score=28.89 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=39.8
Q ss_pred HHHHHhhcch---hhHHHHHHhHHhHHHHHHHHhhhccCCc--hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 4 LASLLTTEIP---EGRTSLLDSHSNLEKVAEYCEGNYFQAD--NK---RMALEETKNYTTQSLASVAYQINTLAYNFLQL 75 (420)
Q Consensus 4 l~~~~~~~ip---~~r~~L~~~~~nL~~vA~YCe~nY~~~~--dk---~~aleetk~y~~qsLasVayqIn~lA~~ll~l 75 (420)
|+.+++.+|. .+|+.|...+=.+ |||.+++=... += ..-||++++-|...|-+|..-=..-...|..|
T Consensus 119 L~~~le~dik~i~k~RKkLe~rRLdy----D~~K~r~~k~~eeelr~a~ekFees~E~a~~~M~~il~~e~e~~~~L~~l 194 (223)
T cd07614 119 LQNLCDKDLKEIQHHLKKLEGRRLDF----DYKKKRQGKIPDEELRQAMEKFEESKEVAETSMHNLLETDIEQVSQLSAL 194 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4445544443 4444444443333 78888862111 11 12577788888777777755422334455666
Q ss_pred HHHHHH
Q psy9761 76 LDLQTA 81 (420)
Q Consensus 76 Ld~Q~~ 81 (420)
++.|.+
T Consensus 195 veAQl~ 200 (223)
T cd07614 195 VDAQLD 200 (223)
T ss_pred HHHHHH
Confidence 666653
No 120
>KOG3304|consensus
Probab=36.36 E-value=3.2e+02 Score=25.00 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=59.5
Q ss_pred HHHHHhhcchhhHHHHHHhHHhHHHHHHHHhh------------hc---------cCCchhH-HHHHHHHHHHH-HHHHH
Q psy9761 4 LASLLTTEIPEGRTSLLDSHSNLEKVAEYCEG------------NY---------FQADNKR-MALEETKNYTT-QSLAS 60 (420)
Q Consensus 4 l~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~------------nY---------~~~~dk~-~aleetk~y~~-qsLas 60 (420)
|+....+++=+-++.+.||+..+-++|.--.. +| |++.|.- +-.-+.|+|+. .-..|
T Consensus 20 l~k~~~~Rl~ddIkS~~dNF~~Ii~~Akv~~~~q~~k~tq~~q~a~eM~vRAa~mVrA~dsLlKLvsdLKqflIl~dFhs 99 (148)
T KOG3304|consen 20 LLKSYNKRLKDDIKSIMDNFTEIIKTAKVEDETQVSKATQGEQDAYEMHVRAANMVRAGDSLLKLVSDLKQFLILNDFHS 99 (148)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHhcCChhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 55556777888889999999999988854322 11 1222221 23344555543 33567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9761 61 VAYQINTLAYNFLQLLDLQTAQLEEMESQMNH 92 (420)
Q Consensus 61 VayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~ 92 (420)
|-.+|..--..+-+.++.|..++..+.++|+.
T Consensus 100 ln~~I~q~~aq~~~t~~e~~r~l~~l~de~s~ 131 (148)
T KOG3304|consen 100 LNEAIDQRNAQFRQTQEECDRKLITLRDEVSI 131 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887778888888888888888877765
No 121
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.27 E-value=3e+02 Score=28.39 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=47.7
Q ss_pred hHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9761 15 GRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIG 94 (420)
Q Consensus 15 ~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~ 94 (420)
....|.+.-.||.++++.-..+. +|=...++.+...+ .+++..+-+|+.+..++..++...+.+.+.+..-+..++
T Consensus 174 ~~~~l~~~l~~l~~~~~~ln~~~---~~i~~~i~~l~~~~-~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~ 249 (359)
T COG1463 174 TGPQLNALLDNLAQFTDALNARD---GDIGALIANLNQLL-DSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALS 249 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 34455566666666666665542 33344555555544 677777788888888877777766666565655555555
Q ss_pred h
Q psy9761 95 Q 95 (420)
Q Consensus 95 q 95 (420)
.
T Consensus 250 ~ 250 (359)
T COG1463 250 A 250 (359)
T ss_pred H
Confidence 4
No 122
>PRK14155 heat shock protein GrpE; Provisional
Probab=35.95 E-value=3.3e+02 Score=26.43 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=34.3
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLL 76 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lL 76 (420)
++.+|-+..+++.+....+.|+.+=|| || |+.+-.|.++.-..++.+++-.+=-+.-+|-+.|
T Consensus 18 l~~~l~~le~e~~elkd~~lR~~Aefe-N~-----RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl 80 (208)
T PRK14155 18 AAQEIEALKAEVAALKDQALRYAAEAE-NT-----KRRAEREMNDARAYAIQKFARDLLGAADNLGRAT 80 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHH
Confidence 344556667778888888888888887 44 5444444443333333333333333333333333
No 123
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=35.69 E-value=3.9e+02 Score=25.94 Aligned_cols=65 Identities=25% Similarity=0.218 Sum_probs=36.7
Q ss_pred HHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 16 RTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 16 r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.+.|-++-.||+++++=.+.- .+++..+++|+ -|+.+++.+|..|=.+...||+....++..+++
T Consensus 105 ~esl~~~i~~~~~aa~~i~~~-------~~~~~~~~~Y~--------eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~ 169 (202)
T TIGR03513 105 MQSLGNGINNFEGAAKTLAPM-------TDSYAQQKKYI--------EQMSSLAANMEGLNTIYEAQLKGASSHADANNE 169 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666554432 23555555665 355666666666666655555655555555444
No 124
>PRK14144 heat shock protein GrpE; Provisional
Probab=35.53 E-value=2.2e+02 Score=27.53 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=28.4
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQS 57 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~qs 57 (420)
++.+|-+..+++.+....+.|+++=|| || |+. -.++.++|+++.
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~Aefe-N~-----RKR~~kE~e~~~~~a~~~ 96 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELE-NV-----RRRMEREVANAHKYGVEK 96 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHH
Confidence 445666667778888888888888887 55 333 345555555544
No 125
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=35.13 E-value=1.1e+02 Score=26.00 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=33.8
Q ss_pred HHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHH------HHHHHHHHH
Q psy9761 19 LLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASV------AYQINTLAY 70 (420)
Q Consensus 19 L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasV------ayqIn~lA~ 70 (420)
=.+|-.+|.++.++|+++ .....+++|.=||+.| .|.|..+..
T Consensus 19 PE~ni~~lk~l~~~~~~~---------~~~~v~kLa~lSl~~VFkDIiPgYrIR~~te 67 (95)
T PF07540_consen 19 PEENIGSLKRLLKLCESK---------VDVTVRKLAILSLLAVFKDIIPGYRIRPLTE 67 (95)
T ss_pred HHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHhhcCCCcccCCCCh
Confidence 346778899999999987 5567888898999988 577766544
No 126
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=34.19 E-value=2.7e+02 Score=27.02 Aligned_cols=85 Identities=16% Similarity=0.105 Sum_probs=45.8
Q ss_pred cchhhHHHHHHhHHhHHHHHHHHhhhcc---CCc--hhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHH
Q psy9761 11 EIPEGRTSLLDSHSNLEKVAEYCEGNYF---QAD--NKRMALEETKNYT---TQSLASVAYQINTLAYNFLQ--LLDLQT 80 (420)
Q Consensus 11 ~ip~~r~~L~~~~~nL~~vA~YCe~nY~---~~~--dk~~aleetk~y~---~qsLasVayqIn~lA~~ll~--lLd~Q~ 80 (420)
-+|--|..+.+..+.+.+|||.||+.=. -.. =....-|+-++|+ .++-..+.-.|+.|-..+.. .+..=.
T Consensus 74 flP~~R~Dil~L~~~~D~i~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~~~~~~~i~ 153 (217)
T COG1392 74 FLPFDREDILELIESQDDIADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLESADRLLEII 153 (217)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3577899999999999999999996521 111 0011222223332 22323333333333333333 111223
Q ss_pred HHHHHHHHhhhhhhh
Q psy9761 81 AQLEEMESQMNHIGQ 95 (420)
Q Consensus 81 ~~~~~~e~~i~~l~q 95 (420)
.+|+++|.++..|..
T Consensus 154 ~eI~~~E~e~D~i~~ 168 (217)
T COG1392 154 KEIEALEHECDDIQR 168 (217)
T ss_pred HHHHHHHHHhhHHHH
Confidence 367788888777766
No 127
>PRK14145 heat shock protein GrpE; Provisional
Probab=33.66 E-value=4e+02 Score=25.61 Aligned_cols=28 Identities=7% Similarity=0.098 Sum_probs=21.1
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhh
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEG 35 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~ 35 (420)
++.++-+.+.+|.+....+.|+.+=+|+
T Consensus 50 l~~~l~~le~e~~el~d~~lR~~AEfeN 77 (196)
T PRK14145 50 LKQKLQQKEVEAQEYLDIAQRLKAEFEN 77 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888877774
No 128
>PRK14151 heat shock protein GrpE; Provisional
Probab=33.30 E-value=3.8e+02 Score=25.20 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=34.2
Q ss_pred hhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 9 TTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLD 77 (420)
Q Consensus 9 ~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd 77 (420)
+.+|-+..++|.+....+.|+++=+|+ | |+.+-.|-.+.-..++.+++-.+=.+.-+|-+.|+
T Consensus 26 ~~~i~~le~e~~el~d~~lR~~Ae~eN-~-----rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~ 88 (176)
T PRK14151 26 TARVQELEEQLAAAKDQSLRAAADLQN-V-----RRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLE 88 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh
Confidence 445555677777888888888877774 4 44444444333333344444444334444444443
No 129
>PRK14147 heat shock protein GrpE; Provisional
Probab=32.98 E-value=3.8e+02 Score=25.12 Aligned_cols=43 Identities=12% Similarity=0.237 Sum_probs=26.4
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQ 56 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~q 56 (420)
++.+|-+..++|.+....+.|..+=||+ | |+. -.+++++|+.+
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN-~-----rkR~~kE~e~~~~~a~~ 68 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLEN-Q-----RKRIARDVEQARKFANE 68 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHH
Confidence 3445556677777777777787777763 4 333 34555556553
No 130
>KOG0174|consensus
Probab=32.88 E-value=21 Score=34.38 Aligned_cols=30 Identities=20% Similarity=0.484 Sum_probs=23.1
Q ss_pred HHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy9761 31 EYCEGNYFQADNKRMALEETKNYTTQSLASVAYQ 64 (420)
Q Consensus 31 ~YCe~nY~~~~dk~~aleetk~y~~qsLasVayq 64 (420)
-||..||= .-+.+||+++|+++|++-..++
T Consensus 156 Gf~D~~~r----~nMt~EE~~~fvk~Av~lAi~r 185 (224)
T KOG0174|consen 156 GFCDANWR----PNMTLEECVRFVKNAVSLAIER 185 (224)
T ss_pred eeehhhcC----CCCCHHHHHHHHHHHHHHHHhc
Confidence 58888882 2368999999999998755443
No 131
>PLN03217 transcription factor ATBS1; Provisional
Probab=32.61 E-value=2.7e+02 Score=23.67 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 43 KRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDL 78 (420)
Q Consensus 43 k~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~ 78 (420)
..++|.||=+|.. +| --.++.|+-.|-+||+.
T Consensus 47 askvLqEtC~YIr-sL---hrEvDdLSerLs~LL~t 78 (93)
T PLN03217 47 AARVLQDTCNYIR-NL---HREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHhc
Confidence 4679999999984 34 44567788888888875
No 132
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.59 E-value=2.7e+02 Score=31.25 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=32.2
Q ss_pred hhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 14 EGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNF 72 (420)
Q Consensus 14 ~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~l 72 (420)
.+|+.+.+..++|-+-... -..-|++.++-+.+-|.+.+-+||.++.+|
T Consensus 130 aaRq~vl~~A~~La~~fn~----------~~~~L~~~~~~vn~qi~~~V~~IN~l~~qI 178 (626)
T PRK08871 130 GARKVVLEKAKLISQTLND----------FHETVRQQKDVTNKKLDLGVERINQIALEI 178 (626)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555555332222 234577777778888888888888888886
No 133
>COG3807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.51 E-value=38 Score=31.52 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.1
Q ss_pred EEEEEEecCCCeeEEEECCeeeEec
Q psy9761 388 VIYVLKKNDDGWWEGVMDGITGLFP 412 (420)
Q Consensus 388 iI~Vl~k~~~GWweG~~~G~~G~FP 412 (420)
++.-+++++++||+-+++|.+||+-
T Consensus 133 v~~sl~~C~g~wC~~~~~g~~GWi~ 157 (171)
T COG3807 133 VVGSLKKCKGQWCRLTAKGYSGWIS 157 (171)
T ss_pred eEEEecccccceEEEEccCccceee
Confidence 4556778899999999999999984
No 134
>KOG3003|consensus
Probab=31.67 E-value=2.4e+02 Score=28.02 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=22.9
Q ss_pred HHHHHhHHhHHHHHHHHhhhccCCch-hHHHHHHHHHHHHHHHHH
Q psy9761 17 TSLLDSHSNLEKVAEYCEGNYFQADN-KRMALEETKNYTTQSLAS 60 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~nY~~~~d-k~~aleetk~y~~qsLas 60 (420)
++|+|.+ .|-.+-||+- .| -++-.|++|.|++|+++-
T Consensus 87 ~eLkdk~---~rs~Ad~eNl----r~R~~r~~edak~FaiQ~f~k 124 (236)
T KOG3003|consen 87 QELKDKY---LRSLAECENL----RDRTIRDVEDAKKFAIQSFCK 124 (236)
T ss_pred HHHHHHH---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 5666665 3333446654 23 234679999999987654
No 135
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.58 E-value=1.8e+02 Score=23.42 Aligned_cols=34 Identities=9% Similarity=0.221 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 61 VAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 61 VayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
||||=+++ ..|.+.+-.|..+|.+|+.++..|.+
T Consensus 17 lafQe~tI-e~Ln~~v~~Qq~~I~~L~~~l~~L~~ 50 (72)
T PRK02793 17 LAFQEITI-EELNVTVTAHEMEMAKLRDHLRLLTE 50 (72)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443332 34566667777888888888888766
No 136
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=31.28 E-value=2.3e+02 Score=21.27 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=8.9
Q ss_pred HHHHHhHHhHHHHHHHH
Q psy9761 17 TSLLDSHSNLEKVAEYC 33 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YC 33 (420)
..++...=.|.++.+|+
T Consensus 8 ~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 8 RRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHTT--HHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 34455555666666666
No 137
>PRK14162 heat shock protein GrpE; Provisional
Probab=31.17 E-value=4e+02 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=27.5
Q ss_pred hhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHHH
Q psy9761 9 TTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQS 57 (420)
Q Consensus 9 ~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~qs 57 (420)
+.+|-...+++.+....|.|+.+=+|+ | |+. -.+++++|+++.
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN-~-----rkR~~kE~e~~~~~a~~~ 90 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQN-M-----QNRYAKERAQLIKYESQS 90 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHH
Confidence 556666677777888888888777775 5 332 345556665443
No 138
>TIGR00153 conserved hypothetical protein TIGR00153. An apparent homolog with a suggested function is Pit accessory protein from Sinorhizobium meliloti, which may be involved in phosphate (Pi) transport.
Probab=30.74 E-value=4.5e+02 Score=24.81 Aligned_cols=83 Identities=11% Similarity=0.131 Sum_probs=48.8
Q ss_pred chhhHHHHHHhHHhHHHHHHHHhhhcc----CCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q psy9761 12 IPEGRTSLLDSHSNLEKVAEYCEGNYF----QADNKRM-ALEETKNYTTQSLASVAYQINTLAYNFL-----QLLDLQTA 81 (420)
Q Consensus 12 ip~~r~~L~~~~~nL~~vA~YCe~nY~----~~~dk~~-aleetk~y~~qsLasVayqIn~lA~~ll-----~lLd~Q~~ 81 (420)
.|--|..+...-.+|.+|+||++.... ..-..-. .-++.++++ +.+...+..+..+-..|+ .-+.--..
T Consensus 76 tP~dReDi~~L~~~lD~I~D~i~~~a~~l~l~~~~~~~~l~~~~~~l~-~~i~~~~~~l~~av~~l~~~~~~~~i~~~~~ 154 (216)
T TIGR00153 76 LPNDRRDLLELAELLDEILDSLEHAAMLYELRKFEFPEELRDEFLLVL-KITVDMIQHLHRVVEVIELETDLSLANDIIK 154 (216)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 477899999999999999999997632 1111111 123334443 333334444444333331 22334566
Q ss_pred HHHHHHHhhhhhhh
Q psy9761 82 QLEEMESQMNHIGQ 95 (420)
Q Consensus 82 ~~~~~e~~i~~l~q 95 (420)
+|+++|.++-.+..
T Consensus 155 ~I~~lE~e~D~i~~ 168 (216)
T TIGR00153 155 EIKDLEDEIDVMQI 168 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888887766
No 139
>PLN02742 Probable galacturonosyltransferase
Probab=30.52 E-value=2.1e+02 Score=31.60 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=49.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 40 ADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 40 ~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
+.+|-+++|++-.=|. ++-|.+.+++.+|-+||+.--++++....+-..++||++-|+.|..
T Consensus 131 ~~~~~~~m~~~i~~ak----~~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~l 192 (534)
T PLN02742 131 AEPIIRDLAALIYQAQ----DLHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSL 192 (534)
T ss_pred HHHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 4445556665554443 3567899999999999999999999999999999999988888875
No 140
>PF04088 Peroxin-13_N: Peroxin 13, N-terminal region; InterPro: IPR007223 Peroxin-13 is a component of the peroxisomal translocation machinery with Peroxin-14 and Peroxin-17. Both termini of Peroxin-13 are oriented to the cytosol. It is required for peroxisomal association of peroxin-14 []. The proteins also contain an SH3 domain (IPR001452 from INTERPRO).; GO: 0016560 protein import into peroxisome matrix, docking, 0005777 peroxisome, 0016021 integral to membrane
Probab=30.21 E-value=3.9e+02 Score=24.85 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=46.0
Q ss_pred HHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 4 LASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQ 79 (420)
Q Consensus 4 l~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q 79 (420)
+..++|+.==.+-|-++.--.-...+|.-.|++|+.- .. .=.|+.+||.|.+.|=..|-++|.+=
T Consensus 16 ~~q~~eestr~tFq~IESIV~Afg~fAqMLESTy~At-------hs----SF~a~v~VAeqF~~Lk~~lgs~l~if 80 (158)
T PF04088_consen 16 FTQQAEESTRATFQSIESIVGAFGGFAQMLESTYMAT-------HS----SFFAMVSVAEQFGRLKNTLGSILGIF 80 (158)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555545667777777778888888888888422 21 13678999999999988888777653
No 141
>TIGR01013 2a58 Phosphate:Na+ Symporter (PNaS) Family.
Probab=29.98 E-value=2.9e+02 Score=29.33 Aligned_cols=51 Identities=8% Similarity=-0.042 Sum_probs=33.4
Q ss_pred HHHHHHhHHhHHHHHHHHhhhcc---C--CchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 16 RTSLLDSHSNLEKVAEYCEGNYF---Q--ADNKRMALEETKNYTTQSLASVAYQIN 66 (420)
Q Consensus 16 r~~L~~~~~nL~~vA~YCe~nY~---~--~~dk~~aleetk~y~~qsLasVayqIn 66 (420)
..++.....+|+++.|.|+..=+ + .+++..--|++++...+.++.|---+|
T Consensus 337 ~~~~i~~~~~lerigd~~~~l~~~~~~~~~~~~~~fs~~~~~el~~~~~~v~~~f~ 392 (456)
T TIGR01013 337 SALQIAYCHNLFNISGIVLFYPLPCTRKPIAAARGFGDDGSKYRWFLIVYLVLNFL 392 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999999997633 1 344555667776666555555543333
No 142
>PF12913 SH3_6: SH3 domain of the SH3b1 type; PDB: 3M1U_B.
Probab=29.92 E-value=90 Score=24.01 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=23.4
Q ss_pred CccccCCCCEEEEEEecC-CCeeEEEECCeeeEecC
Q psy9761 379 DELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPG 413 (420)
Q Consensus 379 dELSf~kGDiI~Vl~k~~-~GWweG~~~G~~G~FPs 413 (420)
.+=.+..|+-|.|++... ..|...+.....||+++
T Consensus 19 Q~s~l~~gtPv~i~H~S~D~~W~fV~t~~~~GWV~s 54 (54)
T PF12913_consen 19 QNSALHPGTPVYILHTSRDGAWAFVQTPFYSGWVKS 54 (54)
T ss_dssp EEEEE-TT-EEEEEEE-TTSSEEEEE-SS-EEEEEG
T ss_pred hhcccCCCCCEEEEEECCCCCEEEEecCCeeEeeeC
Confidence 445678999999999854 55777788889999864
No 143
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=29.85 E-value=5.4e+02 Score=26.92 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=27.3
Q ss_pred ChHHHHHHhhcchhhHHHHHHhHHhHHHHHHHHh
Q psy9761 1 MAELASLLTTEIPEGRTSLLDSHSNLEKVAEYCE 34 (420)
Q Consensus 1 m~el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe 34 (420)
|.++..-|+..+++.+..|...+..|.+..|=-+
T Consensus 225 m~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~ 258 (359)
T PF10498_consen 225 MKQHKKSIESALPETKSQLDKLQQDISKTLEKIE 258 (359)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999988888887776655
No 144
>PRK14139 heat shock protein GrpE; Provisional
Probab=29.82 E-value=5e+02 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.322 Sum_probs=30.1
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQSL 58 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~qsL 58 (420)
++.+|-+..+++.+....+.|+.+-|| || |+. -.++.++|+.+.+
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~Aefe-N~-----rKR~~kE~e~~~~~a~~~~ 84 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETE-NV-----RRRAQEDVAKAHKFAIESF 84 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHHHHHHH
Confidence 455666777888888888888888887 45 333 4455666665543
No 145
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=29.56 E-value=4.6e+02 Score=24.26 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9761 64 QINTLAYNFLQLLDLQTAQLEEMESQMNH 92 (420)
Q Consensus 64 qIn~lA~~ll~lLd~Q~~~~~~~e~~i~~ 92 (420)
+|+..+.++......+...+.++...+..
T Consensus 204 ~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 232 (262)
T smart00283 204 EIAAATDEQAAGSEEVNAAIDEIAQVTQE 232 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444333333
No 146
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=29.28 E-value=53 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=13.3
Q ss_pred cCCCCEEEEEEec---CCCeeEEEE
Q psy9761 383 FQESAVIYVLKKN---DDGWWEGVM 404 (420)
Q Consensus 383 f~kGDiI~Vl~k~---~~GWweG~~ 404 (420)
|++|+.|.|.... .+.||.|..
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V 25 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATV 25 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEE
Confidence 7899999999874 345888875
No 147
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.12 E-value=1.5e+02 Score=29.51 Aligned_cols=46 Identities=17% Similarity=-0.015 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 41 DNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEM 86 (420)
Q Consensus 41 ~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~ 86 (420)
..|.+++|=.++=..-+-.+|||+|-.|+.-.++.++--...|..|
T Consensus 53 Pr~EktiefL~d~~qt~~~~~a~~~~~l~~lg~~d~~r~~~~l~~~ 98 (274)
T COG1689 53 PRKEKTIEFLYDQMQTAGVGVAMAIEFLRILGAKDLARNKMLLLFL 98 (274)
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccchhhHHHHHh
Confidence 3467777777776667889999999888877777777655544444
No 148
>PF09509 Hypoth_Ymh: Protein of unknown function (Hypoth_ymh); InterPro: IPR012654 This entry consists of a relatively rare prokaryotic protein family (about 8 occurrences per 200 genomes). Genes for members of this family appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. Their function is unknown.
Probab=29.07 E-value=72 Score=28.24 Aligned_cols=27 Identities=15% Similarity=0.377 Sum_probs=20.9
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHH
Q psy9761 28 KVAEYCEGNYFQADNKRMALEETKNYT 54 (420)
Q Consensus 28 ~vA~YCe~nY~~~~dk~~aleetk~y~ 54 (420)
+|.+||...|++..--..++|-+|.+.
T Consensus 8 ~i~~~~~~~~~~~~y~~AV~eA~K~l~ 34 (125)
T PF09509_consen 8 EIWKYCREELLDGHYFHAVFEAVKSLE 34 (125)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577999999988766677777777654
No 149
>PF05875 Ceramidase: Ceramidase; InterPro: IPR008901 This entry consists of several ceramidases. Ceramidases are enzymes involved in regulating cellular levels of ceramides, sphingoid bases, and their phosphates.; GO: 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0006672 ceramide metabolic process, 0016021 integral to membrane
Probab=28.88 E-value=18 Score=35.37 Aligned_cols=11 Identities=36% Similarity=0.924 Sum_probs=9.2
Q ss_pred HHHHHhhhccC
Q psy9761 29 VAEYCEGNYFQ 39 (420)
Q Consensus 29 vA~YCe~nY~~ 39 (420)
-+||||.||..
T Consensus 10 ~~dwCE~nY~~ 20 (262)
T PF05875_consen 10 TIDWCEENYVV 20 (262)
T ss_pred ccccchhcccc
Confidence 36999999975
No 150
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=28.50 E-value=1.2e+02 Score=24.12 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=37.2
Q ss_pred hHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9761 22 SHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIG 94 (420)
Q Consensus 22 ~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~ 94 (420)
....|.++|+|-+..+-+-.++...++..+ +++=+..++|+....+-..+-++.+ +.+++.+|..|.
T Consensus 19 ~ee~l~~~a~~i~~~i~~~~~~~~~~~~~~-~~vlaaLnla~e~~~~~~~~~~~~~-----~~~l~~~i~~L~ 85 (89)
T PF05164_consen 19 DEEYLRKAAELINEKINEIKKKYPKLSPER-LAVLAALNLADELLKLKRELDELEE-----LERLEERIEELN 85 (89)
T ss_dssp GHHHHHHHHHHHHHHHHHHCTTCCTSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHH
Confidence 345577788887777654333333444433 3444566677766666555544444 345555555554
No 151
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=28.31 E-value=3.9e+02 Score=28.67 Aligned_cols=88 Identities=14% Similarity=0.248 Sum_probs=57.0
Q ss_pred HHHHHHhhcchhhHHHHHHh----HHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 3 ELASLLTTEIPEGRTSLLDS----HSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDL 78 (420)
Q Consensus 3 el~~~~~~~ip~~r~~L~~~----~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~ 78 (420)
.|.+.|++. |++.++|--. ..=..++.+|++. |+... ..|..-++....-+-.+.-||..+=..|-++-+-
T Consensus 361 kl~~al~~n-p~~V~~lF~~~~~~~G~~~~l~~~l~~-~~~~~---G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~r 435 (462)
T PRK08032 361 KLTKALKED-PAGVKALFVGDGKKTGITTQIATNLKS-WLSTT---GIIKTATDGVNKTLKKLTKQYNAVSDSIDATIAR 435 (462)
T ss_pred HHHHHHHHC-HHHHHHHhCCCCCCCcHHHHHHHHHHH-HHcCC---ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777 8888888632 2344667777776 55432 4565555555566777888888777777666665
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy9761 79 QTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 79 Q~~~~~~~e~~i~~l~q 95 (420)
=..|...||.-|+.+++
T Consensus 436 l~~qF~ame~~~s~mns 452 (462)
T PRK08032 436 YKAQFTQLDKLMTSLNS 452 (462)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55566666666666554
No 152
>PLN02956 PSII-Q subunit
Probab=28.15 E-value=3.7e+02 Score=25.78 Aligned_cols=73 Identities=12% Similarity=0.135 Sum_probs=54.8
Q ss_pred hhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhh
Q psy9761 14 EGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQL-EEMESQMNH 92 (420)
Q Consensus 14 ~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~-~~~e~~i~~ 92 (420)
+|-+..+++..+|..|.++.++. +|-++++|.--.+..+-|.++++-.+++--=.-+..+| +++-..+..
T Consensus 84 eA~ar~k~~A~~l~~LK~LI~k~---------~W~yvrn~LRgp~s~Lr~DL~~Ii~slpp~Drk~a~~La~~LFd~l~~ 154 (185)
T PLN02956 84 EAESGVRGHAENLLRVKALIESE---------SWKEAQKALRRSASNLKQDLYAIIQAKPGKDRPQLRRLYSDLFNSVTK 154 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc---------cHHHHHHHHHccHHHHHHHHHHHHHhcCHhHhHHHHHHHHHHHHHHHH
Confidence 57788999999999999999854 78999999999999999999999888764444444444 334444444
Q ss_pred hhh
Q psy9761 93 IGQ 95 (420)
Q Consensus 93 l~q 95 (420)
|..
T Consensus 155 LD~ 157 (185)
T PLN02956 155 LDY 157 (185)
T ss_pred HHH
Confidence 433
No 153
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=27.99 E-value=1.4e+02 Score=32.96 Aligned_cols=81 Identities=12% Similarity=0.281 Sum_probs=55.2
Q ss_pred hHHHHHHhHHhHH------HHHHHHhhhccCCchhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 15 GRTSLLDSHSNLE------KVAEYCEGNYFQADNKRM-----ALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQL 83 (420)
Q Consensus 15 ~r~~L~~~~~nL~------~vA~YCe~nY~~~~dk~~-----aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~ 83 (420)
-.++|+.-+.||+ |-==.|..+|+..++-.. +-.|+-+..-+-|-.|-.+...+.-+|+.+|++|..|+
T Consensus 84 p~~~lr~aF~~idla~G~~R~GPLanG~~~~gD~ys~~F~P~s~~Eia~m~~~el~~~L~~~~~i~~~mi~~i~~~~~Ei 163 (582)
T PF03276_consen 84 PWNELRRAFDNIDLAEGPLRFGPLANGNYIPGDPYSLSFNPVSAQEIAQMQRDELEDVLNFQGQILEQMIDDIGMQQREI 163 (582)
T ss_pred cHHHHHHHHhcCCCCCCccccCccCCCccccCCccccccCCccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555543 112258889987665443 33455555566677777777888888999999999999
Q ss_pred HHHHHhhhhhhh
Q psy9761 84 EEMESQMNHIGQ 95 (420)
Q Consensus 84 ~~~e~~i~~l~q 95 (420)
+.|+..+..+..
T Consensus 164 r~Lr~~~~~l~~ 175 (582)
T PF03276_consen 164 RDLRETIQRLQI 175 (582)
T ss_pred HHHHHHHHHHHh
Confidence 999877776654
No 154
>PRK14154 heat shock protein GrpE; Provisional
Probab=27.84 E-value=5.7e+02 Score=24.83 Aligned_cols=43 Identities=2% Similarity=0.116 Sum_probs=27.6
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQ 56 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~q 56 (420)
++.+|-+..+++.+....+.|+.+=+|+ | |+. -.+++++|+++
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeN-y-----RKR~~kE~e~~~~~a~e 102 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDN-L-----RKRIEREKADIIKFGSK 102 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHH
Confidence 4556667777888888888888777764 4 333 34455555553
No 155
>PF13047 DUF3907: Protein of unknown function (DUF3907)
Probab=27.75 E-value=1e+02 Score=28.44 Aligned_cols=56 Identities=27% Similarity=0.339 Sum_probs=40.6
Q ss_pred HHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHH----HHHHHHHHHHHHHH
Q psy9761 4 LASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEET----KNYTTQSLASVAYQ 64 (420)
Q Consensus 4 l~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleet----k~y~~qsLasVayq 64 (420)
|.+|+++. +..+.--++.-++|-+++-|||..| +|-.++-.. |.+|-++|-.|=.|
T Consensus 25 L~~L~~e~-~~~~~yY~~~Ls~lRrLlVf~E~~~----e~~~v~Lr~~~F~~~aAEktLY~vYHq 84 (148)
T PF13047_consen 25 LPSLLEES-PGEEAYYKGLLSDLRRLLVFCEEGY----EACGVLLRREPFRKEAAEKTLYKVYHQ 84 (148)
T ss_pred HHHHHhcC-cccHHHHHHHHHHHHHHHHhhHhHH----HHHHHHHcCCCcchhHHHHHHHHHHHH
Confidence 55666666 7777888889999999999999988 554433332 56777888776433
No 156
>PF02194 PXA: PXA domain; InterPro: IPR003114 This domain is found associated with PX domains. The PX (phox) domain [] occurs in a variety of eukaryotic proteins associated with intracellular signalling pathways.
Probab=27.19 E-value=4.7e+02 Score=23.62 Aligned_cols=66 Identities=11% Similarity=0.235 Sum_probs=42.0
Q ss_pred HhHHHHHHHHhhhccC------CchhHHHHHHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9761 24 SNLEKVAEYCEGNYFQ------ADNKRMALEETKNYTTQSLASVAY---QIN---TLAYNFLQLLDLQTAQLEEMESQM 90 (420)
Q Consensus 24 ~nL~~vA~YCe~nY~~------~~dk~~aleetk~y~~qsLasVay---qIn---~lA~~ll~lLd~Q~~~~~~~e~~i 90 (420)
..|+++.+++-..|+. +.|. .-.+|.+.....+++.++- .|+ -+..+++.+|..+...++++...+
T Consensus 6 ~~l~~li~~I~rdfV~sWY~~Is~d~-~F~~ei~~~l~~~~~~l~~R~~~vD~~~ll~~~l~~~l~~Hl~~~r~a~~~~ 83 (185)
T PF02194_consen 6 EALHELIDLILRDFVNSWYSKISPDP-EFPNEIRRILRHALRELSQRLSRVDLVKLLLDDLLPILTKHLRDYREARERL 83 (185)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCcH-HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666666654 3555 5556666555555555544 444 347788888888888888888777
No 157
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=27.07 E-value=2.4e+02 Score=32.33 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=48.4
Q ss_pred ChHHHHHHhhcch---hhHHHHHHhHHh---HHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 1 MAELASLLTTEIP---EGRTSLLDSHSN---LEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQ 74 (420)
Q Consensus 1 m~el~~~~~~~ip---~~r~~L~~~~~n---L~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~ 74 (420)
|.||...+|+.=- +-.++|++.|-+ +.+.+++.-++|..+..=++=|.|.++..+.=|-.|+.-|+.+|.+|-+
T Consensus 379 ~~~l~~~~e~~~~~~~~~p~~~~~~C~r~~~~~~~~~~~~~~~~~n~~w~~rl~e~R~~va~Ql~~~s~~l~~~a~e~~~ 458 (764)
T TIGR02865 379 MEELIENLEEKKDPNSKLPDEFERKCIKRKELINTTEDILNNYIINEMWRKRLEEGRRLVAEQLKGVAESVEDIAKEINL 458 (764)
T ss_pred HHHHHHHHHhcCCchhhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555322 444556666544 4445566666676666656667778888777788888888888877644
Q ss_pred HHH
Q psy9761 75 LLD 77 (420)
Q Consensus 75 lLd 77 (420)
..+
T Consensus 459 ~~~ 461 (764)
T TIGR02865 459 EIV 461 (764)
T ss_pred hhh
Confidence 433
No 158
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=27.06 E-value=6e+02 Score=24.78 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=43.4
Q ss_pred HHHHHhhcc---hhhHHHHHHhHHhHHHHHHHHhhhccCCch-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 4 LASLLTTEI---PEGRTSLLDSHSNLEKVAEYCEGNYFQADN-----KRMALEETKNYTTQSLASVAYQINTLAYNFLQL 75 (420)
Q Consensus 4 l~~~~~~~i---p~~r~~L~~~~~nL~~vA~YCe~nY~~~~d-----k~~aleetk~y~~qsLasVayqIn~lA~~ll~l 75 (420)
|+.+++.+| -.+|+.|...+-.+ ||+..++-.+.+ ...-||++++-|...|-++..-=..-...|..|
T Consensus 119 L~~~l~~dik~i~k~RKkLe~rRLdy----D~~k~k~~k~~eeEl~~Ae~kfe~s~E~a~~~M~~il~~e~e~~~~L~~l 194 (223)
T cd07592 119 LQQLQDKDLKEINHHRKKLEGRRLDY----DYKKRKQGKGPDEELKQAEEKFEESKELAENSMFNLLENDVEQVSQLSAL 194 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 455555554 44555555444333 455566532211 245688888888888877766322334556777
Q ss_pred HHHHHHHHH
Q psy9761 76 LDLQTAQLE 84 (420)
Q Consensus 76 Ld~Q~~~~~ 84 (420)
++.|.+=-+
T Consensus 195 veAQl~Yh~ 203 (223)
T cd07592 195 VEAQLDYHR 203 (223)
T ss_pred HHHHHHHHH
Confidence 777764433
No 159
>PLN02867 Probable galacturonosyltransferase
Probab=26.95 E-value=2.6e+02 Score=31.00 Aligned_cols=62 Identities=8% Similarity=0.057 Sum_probs=51.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 40 ADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 40 ~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
+.+|-++||++..=.++ +=|.+.++|.+|-.||..=-++++....+-..+.||++-|+.|..
T Consensus 115 ~~~~~~~~~~~~~~~~~----~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK~l 176 (535)
T PLN02867 115 TKGSTESFNDLVKEMTS----NRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSL 176 (535)
T ss_pred hhhhhhHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 44677788887766555 778999999999999988888888888899999998888888775
No 160
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=26.77 E-value=1.6e+02 Score=31.87 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHH
Q psy9761 7 LLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVA 62 (420)
Q Consensus 7 ~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVa 62 (420)
....+|.+.|.++.+++..++..+|-|+.- |.++||+.-.|..|.--+|.
T Consensus 26 ~~~~~~~~~r~~~~~~~~~~~elr~~~~ei------k~~~lenLd~~l~~~~~~v~ 75 (459)
T COG1139 26 KAQDTLRANREKVLDELPDWEELRDLAREI------KLHVLENLDEYLEQLEENVT 75 (459)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHH
Confidence 345678888999999999999999999865 89999999999988887774
No 161
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.62 E-value=5.2e+02 Score=24.81 Aligned_cols=28 Identities=14% Similarity=-0.028 Sum_probs=20.8
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhh
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEG 35 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~ 35 (420)
++.+|-...+++.+....+.|+.+-+|+
T Consensus 45 l~~~l~~l~~e~~elkd~~lR~~Ae~eN 72 (195)
T PRK14148 45 AKDTIKELEDSCDQFKDEALRAKAEMEN 72 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777788888888887777764
No 162
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=26.43 E-value=5.9e+02 Score=24.95 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=39.7
Q ss_pred HHHHHhhcchh---hHHHHHHhHHhHHHHHHHHhhhccCC--chh-----------HHHHHHHHHHHHHHHHHHHH-HHH
Q psy9761 4 LASLLTTEIPE---GRTSLLDSHSNLEKVAEYCEGNYFQA--DNK-----------RMALEETKNYTTQSLASVAY-QIN 66 (420)
Q Consensus 4 l~~~~~~~ip~---~r~~L~~~~~nL~~vA~YCe~nY~~~--~dk-----------~~aleetk~y~~qsLasVay-qIn 66 (420)
|..+|+.+|.+ +|+.|...+=. -|+|..++-.+ .|| +.-|+++++-|...|-+|-. +++
T Consensus 124 L~~~l~~dik~i~k~RKkLe~rRLd----~D~~k~r~~kAk~~~~~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~~~~ 199 (229)
T cd07594 124 LRNFLEGDMKTISKERKLLENKRLD----LDACKTRVKKAKSAEAIEQAEQDLRVAQSEFDRQAEITKLLLEGISSTHAN 199 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhcCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 44555544443 35555444333 38899998643 221 12466777777777776655 333
Q ss_pred HHHHHHHHHHHHHHH
Q psy9761 67 TLAYNFLQLLDLQTA 81 (420)
Q Consensus 67 ~lA~~ll~lLd~Q~~ 81 (420)
.+ .+|..+++.|.+
T Consensus 200 ~~-~~L~~lv~AQl~ 213 (229)
T cd07594 200 HL-RCLRDFVEAQMT 213 (229)
T ss_pred HH-HHHHHHHHHHHH
Confidence 33 234555655554
No 163
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=26.10 E-value=5.3e+02 Score=23.84 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 65 INTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 65 In~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
|+....++.++.+.+...+.++...+..|+.
T Consensus 198 i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~ 228 (262)
T smart00283 198 IADLVQEIAAATDEQAAGSEEVNAAIDEIAQ 228 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444
No 164
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=25.92 E-value=2e+02 Score=26.80 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=19.5
Q ss_pred chhhHHHHHHhHHhHHHHHHHHhhh
Q psy9761 12 IPEGRTSLLDSHSNLEKVAEYCEGN 36 (420)
Q Consensus 12 ip~~r~~L~~~~~nL~~vA~YCe~n 36 (420)
.|-.|..+.+.-.+|.+|+||++..
T Consensus 73 tP~dRedi~~L~~~lD~I~d~i~~~ 97 (214)
T PF01865_consen 73 TPFDREDILRLISSLDDIADYIEDA 97 (214)
T ss_dssp -SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888999999999998854
No 165
>KOG2629|consensus
Probab=25.39 E-value=3.9e+02 Score=27.44 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhhhh
Q psy9761 80 TAQLEEMESQMNHIGQ 95 (420)
Q Consensus 80 ~~~~~~~e~~i~~l~q 95 (420)
...++++|++|+.|.|
T Consensus 174 s~~~~k~esei~~Ik~ 189 (300)
T KOG2629|consen 174 SRNIEKLESEINTIKQ 189 (300)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4557888999998887
No 166
>TIGR02391 hypoth_ymh conserved hypothetical protein TIGR02391. This family consists of a relatively rare (~ 8 occurrences per 200 genomes) prokaryotic protein family. Genes for members are appear to be associated variously with phage and plasmid regions, restriction system loci, transposons, and housekeeping genes. The function is unknown.
Probab=25.29 E-value=87 Score=27.88 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=22.7
Q ss_pred HHHHHHhhhccCCchhHHHHHHHHHHHH
Q psy9761 28 KVAEYCEGNYFQADNKRMALEETKNYTT 55 (420)
Q Consensus 28 ~vA~YCe~nY~~~~dk~~aleetk~y~~ 55 (420)
+|.+||...|++..=-..++|-+|.+..
T Consensus 4 ~v~~~~~~~~~~g~Y~~AV~eA~K~v~~ 31 (125)
T TIGR02391 4 KVLGFCREELLLGNYFHAVFEAVKIVEE 31 (125)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 6789999999888777778888887654
No 167
>TIGR01844 type_I_sec_TolC type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa).
Probab=25.11 E-value=4.2e+02 Score=26.59 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=38.8
Q ss_pred HHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9761 16 RTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNH 92 (420)
Q Consensus 16 r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~ 92 (420)
...+.+...++..-++-+-.+|..+.+.....++..+.+.+.+..+--....=-..++++|+.|..-...-..-+..
T Consensus 307 ~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a 383 (415)
T TIGR01844 307 RSTLESQKRTVRQQVRNAWSNLNAAAASVQAYEQQVASAQKALDAYRQEYQVGTRTLLDVLNAEQELYQARQELANA 383 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455544455555555555555566655555555554433333322334567777666555444333333
No 168
>PRK10972 Z-ring-associated protein; Provisional
Probab=25.00 E-value=1.4e+02 Score=26.05 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=35.6
Q ss_pred HhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 21 DSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 21 ~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
+.+..|.++|+|-+...-.-.++-+++.. .+.++=+=. +|++.||..=.........++.+|..|.+
T Consensus 22 ~e~~~L~~AA~~Ld~km~~ir~~~kv~~~-EriavmaAL-------Nl~~ELl~~k~~~~~~~~~~~~rI~~L~~ 88 (109)
T PRK10972 22 EQRDALNQAAEDLNQRLQDLKERTRVTNT-EQLVFIAAL-------NICYELAQEKAKTRDYAANMEQRIRMLQQ 88 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH-------HHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 34567778888877664322222222221 122222222 45556666555455556777777777777
No 169
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=24.85 E-value=5.3e+02 Score=25.02 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=33.8
Q ss_pred cchhhHHHHHHhHHhHHHHHHHHhhhccCCc--hh---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy9761 11 EIPEGRTSLLDSHSNLEKVAEYCEGNYFQAD--NK---------RMALEETKNYTTQSLASVAY-QINTLAYNFLQLLDL 78 (420)
Q Consensus 11 ~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~--dk---------~~aleetk~y~~qsLasVay-qIn~lA~~ll~lLd~ 78 (420)
+|-.+|+.|...+=. -|+|..++-++. ++ +.-||++++-|...|-+|.. +++. ...|..|++.
T Consensus 115 ~i~k~RKkLe~rRLd----yD~~ksk~~kak~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~~~e~e~-~~~L~~lv~A 189 (215)
T cd07593 115 EYHSARKKLESRRLA----YDAALTKSQKAKKEDSRLEEELRRAKAKYEESSEDVEARMVAIKESEADQ-YRDLTDLLDA 189 (215)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHH
Confidence 444455555444332 388888886541 11 22456666666666666554 2222 2344555555
Q ss_pred HHH
Q psy9761 79 QTA 81 (420)
Q Consensus 79 Q~~ 81 (420)
|.+
T Consensus 190 Ql~ 192 (215)
T cd07593 190 ELD 192 (215)
T ss_pred HHH
Confidence 543
No 170
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=24.77 E-value=5.1e+02 Score=27.35 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhhhh-hceeecc
Q psy9761 43 KRMALEETKNYTTQSLASVAYQINTLAYNFLQ-----LLDLQTAQLEEMESQMNHIGQ-IGVLTAN 102 (420)
Q Consensus 43 k~~aleetk~y~~qsLasVayqIn~lA~~ll~-----lLd~Q~~~~~~~e~~i~~l~q-ig~lt~~ 102 (420)
.+..|++...++ ..||.-.-||+.+..+|++ +|+.+.+.++..-..++.++. |-.|+.+
T Consensus 288 ~~~lL~Nle~lt-~~LA~as~~l~~l~~~l~~p~~~~~L~qtl~sl~~t~~ni~~vs~dv~~ft~D 352 (370)
T PLN03094 288 DSGLLKEVEKLT-RVAAEASEDLRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGD 352 (370)
T ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 368888888776 6888888999999777766 444444445544455555544 4444443
No 171
>KOG1961|consensus
Probab=24.75 E-value=2.6e+02 Score=31.53 Aligned_cols=89 Identities=19% Similarity=0.256 Sum_probs=55.7
Q ss_pred hHHHHHHhhcchh-hHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHH
Q psy9761 2 AELASLLTTEIPE-GRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQS--LASVAYQIN---TLAYNFLQL 75 (420)
Q Consensus 2 ~el~~~~~~~ip~-~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qs--LasVayqIn---~lA~~ll~l 75 (420)
+|+..++++-..+ -.++-..+-..|..-+.|.|++..++ -...+.+|++.+ ||+.--||+ .+=..|.++
T Consensus 23 e~~~~~~~~~~~~e~v~~~lktg~~lr~y~~~ve~~l~k~-----e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme~~ 97 (683)
T KOG1961|consen 23 EEVLSQLQECLDDELVKEALKTGDDLREYSKQVENELRKA-----ERKSIQDYIKESENLASLHNQIRACDSVLERMETM 97 (683)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCCcchHHHHHHHHHHHHH-----HhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHH
Confidence 4566666666665 34445556677888888888875333 344455788776 555555554 445555666
Q ss_pred HHHHHHHHHHHHHhhhhhhh
Q psy9761 76 LDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 76 Ld~Q~~~~~~~e~~i~~l~q 95 (420)
|.-=.+.|....+.|..|..
T Consensus 98 L~~FQ~~L~sissDI~~lqe 117 (683)
T KOG1961|consen 98 LSSFQSDLSSISSDIKILQE 117 (683)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 65556667777777776655
No 172
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=24.59 E-value=5e+02 Score=23.26 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=55.5
Q ss_pred ChHHHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccC---C-----------------chhHHHHHHHHHHHHHHHHH
Q psy9761 1 MAELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQ---A-----------------DNKRMALEETKNYTTQSLAS 60 (420)
Q Consensus 1 m~el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~---~-----------------~dk~~aleetk~y~~qsLas 60 (420)
|++..++|+..|=.=..-+-++-.-|.+-|+.|.-+.-. + .+....|++..+-.++.|+-
T Consensus 1 M~DrlTQLQd~ldqL~~~f~~si~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~elA~dIi~ 80 (144)
T PF11221_consen 1 MADRLTQLQDCLDQLAEQFCNSIGYLQRDAPPSPLSPNDPSISDPKPQAPPQQQQQAEPAPDPPEEFEENIKELATDIIR 80 (144)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGG-----------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccccCccccchhhhhhhhcccCCChhhHHHHHHHHHHHHHH
Confidence 777777777664444444444445566666666544322 0 12345677766666678888
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhh
Q psy9761 61 VAYQINTLAYNFLQ---LLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 61 VayqIn~lA~~ll~---lLd~Q~~~~~~~e~~i~~l~q 95 (420)
-+-+|+.|-..|=. -=+.|...|++|+.+...+.+
T Consensus 81 kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~ 118 (144)
T PF11221_consen 81 KAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEE 118 (144)
T ss_dssp HHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888776532 346778888888887776665
No 173
>PLN02769 Probable galacturonosyltransferase
Probab=24.50 E-value=3.7e+02 Score=30.42 Aligned_cols=60 Identities=23% Similarity=0.233 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 42 NKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 42 dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
+|-+++|.+..=|. +++|..++++.+|-.||+.=-++++-...+-..|+||++-|+.|.+
T Consensus 239 ~~~~~m~~~~~~ak----~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~l 298 (629)
T PLN02769 239 KKLEKMEQTIARAK----SCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSH 298 (629)
T ss_pred HHHHHHHHHHHHHH----hhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 45555555554443 4678889999999999999888888888888889998888888875
No 174
>KOG1916|consensus
Probab=24.48 E-value=3.2e+02 Score=32.47 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.2
Q ss_pred hHHHHHHhhcchhhHHHHHHhHHhHHHHH
Q psy9761 2 AELASLLTTEIPEGRTSLLDSHSNLEKVA 30 (420)
Q Consensus 2 ~el~~~~~~~ip~~r~~L~~~~~nL~~vA 30 (420)
+++...|++++.++-++|+|...+|.++.
T Consensus 931 d~~~~rl~e~la~~e~~~r~~~~qi~q~l 959 (1283)
T KOG1916|consen 931 DALWARLQEELAKNEKALRDLQQQITQQL 959 (1283)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 46788888898999999999988887765
No 175
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=24.18 E-value=17 Score=32.14 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=38.5
Q ss_pred hHHhHHHHHHHHhhhc------cC----CchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q psy9761 22 SHSNLEKVAEYCEGNY------FQ----ADNKRMALEETKNYTTQSL--ASVAYQINTLAYNFLQLLD 77 (420)
Q Consensus 22 ~~~nL~~vA~YCe~nY------~~----~~dk~~aleetk~y~~qsL--asVayqIn~lA~~ll~lLd 77 (420)
...++..+-+||+.+| .. ...+|..|.+..+++..-- +=|++.++.||.++.+++.
T Consensus 16 l~~Q~~~l~~~a~~~~~~~~if~D~~SG~~~~Rp~l~~ll~~i~~g~~d~lvV~~ldRl~R~~~d~~~ 83 (134)
T cd03769 16 LERQIERLEAYATAQGWIVEVIKDIGSGLNEKRKGLLKLLEDVLAGKVERVVITYKDRLARFGFELLE 83 (134)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEecCCccccCCHHHHHHHHHHHcCCCCEEEEEeccHHHHhhHHHHH
Confidence 3456666778888752 11 1235788999888876643 3467889999999877654
No 176
>KOG4057|consensus
Probab=24.17 E-value=3.8e+02 Score=25.06 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------HHHHHhhhhhhh
Q psy9761 42 NKRMALEETKNYTTQSLASVAYQINTLAYN--FLQLLDLQTAQL--------EEMESQMNHIGQ 95 (420)
Q Consensus 42 dk~~aleetk~y~~qsLasVayqIn~lA~~--ll~lLd~Q~~~~--------~~~e~~i~~l~q 95 (420)
||-.||+++.+-.---|-+..--|..|+.. +-+.+|-|++++ ++|..+|++|.|
T Consensus 9 dri~Al~~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtq 72 (180)
T KOG4057|consen 9 DRIQALVTIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQ 72 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444444433333333321 222344444333 346678899998
No 177
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=24.16 E-value=57 Score=24.97 Aligned_cols=14 Identities=43% Similarity=0.724 Sum_probs=11.7
Q ss_pred HHhHHHHHHHHhhh
Q psy9761 23 HSNLEKVAEYCEGN 36 (420)
Q Consensus 23 ~~nL~~vA~YCe~n 36 (420)
..-|.+|.+||+..
T Consensus 47 ~~~L~kViewc~~H 60 (62)
T PF03931_consen 47 SRILKKVIEWCEHH 60 (62)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 45799999999975
No 178
>KOG3687|consensus
Probab=23.97 E-value=4.7e+02 Score=31.54 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=59.9
Q ss_pred HHHHHHhhcchhhHHHHHHhHHh-HHHHH-HHHh------------------------------hhccCCchhHHHHHHH
Q psy9761 3 ELASLLTTEIPEGRTSLLDSHSN-LEKVA-EYCE------------------------------GNYFQADNKRMALEET 50 (420)
Q Consensus 3 el~~~~~~~ip~~r~~L~~~~~n-L~~vA-~YCe------------------------------~nY~~~~dk~~aleet 50 (420)
++.+|+-+++|++++.=.....| ++++| .-|. ++|+|...-+...+-.
T Consensus 665 ~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~Pv~~~L~~yh~~lQ~~~~~~~I~~l 744 (1697)
T KOG3687|consen 665 KVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVVPVLTALISYHNYLQKTKQREMIYCL 744 (1697)
T ss_pred HHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeehHHHHHHHHHHHhcCCcchhhHHHHH
Confidence 35567778888887654443333 44444 2344 4455655544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 51 KNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 51 k~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.+=..--.||| -|++|+.-.|.|+|.=..+|.++-.++.+++.
T Consensus 745 ~q~li~~~aSV--cv~~lsi~~Lemp~~~~~~LpD~v~Q~t~~s~ 787 (1697)
T KOG3687|consen 745 EQGLIHRCASV--CVVALSICSLEMPDIIIKALPDLVVQLTHISA 787 (1697)
T ss_pred HHHHhhhhHHH--HHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 44344445666 48999999999999998888888888888777
No 179
>PF07778 CENP-I: Mis6 ; InterPro: IPR012485 Centromere protein Cenp-I (also known as Mis6) is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting Cenp-A, the centromere- specific histone H3 variant; an important event for centromere function and chromosome segregation during mitosis [, ].
Probab=23.88 E-value=1.2e+02 Score=33.33 Aligned_cols=55 Identities=27% Similarity=0.356 Sum_probs=42.9
Q ss_pred hHHhHHHHHHHHhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9761 22 SHSNLEKVAEYCEGN-YFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQT 80 (420)
Q Consensus 22 ~~~nL~~vA~YCe~n-Y~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~ 80 (420)
...+|+.+.+|-|+. ...+..|...++.+ .+.|+++||..|-.-..|..|||+=+
T Consensus 54 ~~~~l~~ai~~l~~~~~~~~~~~~~~~~~~----i~~l~s~A~~~GL~~~~l~~Ll~~~~ 109 (511)
T PF07778_consen 54 DQDSLEDAIEYLEKVSKVPSKRRNTSLKST----IKTLESLAYENGLSPEALDRLLDLIL 109 (511)
T ss_pred hHHHHHHHHHHHHhccccccccccchHHHH----HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 448899999999984 44444555566644 78999999999999999999998754
No 180
>PLN02523 galacturonosyltransferase
Probab=23.88 E-value=3e+02 Score=30.66 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 62 AYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 62 ayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
.|...+++.+|-.||..--++++....+-..+.||++-|+.|..
T Consensus 171 ~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~l 214 (559)
T PLN02523 171 SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSL 214 (559)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 77788999999999999999999999999999998888888775
No 181
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.77 E-value=5.2e+02 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred HHhhcchhhHHHHHHhHHhHHHHHHHHhh
Q psy9761 7 LLTTEIPEGRTSLLDSHSNLEKVAEYCEG 35 (420)
Q Consensus 7 ~~~~~ip~~r~~L~~~~~nL~~vA~YCe~ 35 (420)
-++.+|-...++|.+....|.|+.+-+|+
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN 72 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQN 72 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888888888877774
No 182
>PHA03247 large tegument protein UL36; Provisional
Probab=23.63 E-value=1.8e+03 Score=29.83 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy9761 59 ASVAYQINTLAYNFLQ 74 (420)
Q Consensus 59 asVayqIn~lA~~ll~ 74 (420)
..|.-.|++-+..||.
T Consensus 2349 ~aVSsD~~SWg~~LL~ 2364 (3151)
T PHA03247 2349 EVVSSDVETWAVDLLH 2364 (3151)
T ss_pred HHhcccHHHHHHHHhc
Confidence 3455677777766554
No 183
>PLN02829 Probable galacturonosyltransferase
Probab=23.48 E-value=2.4e+02 Score=31.78 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 41 DNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 41 ~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
.+|-+++|++-.=|. ++-|.+.+++.+|-+||+.--++++..-.+-..+.||++-|+.|.+
T Consensus 239 ~~~~~~m~~~i~~ak----~~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~l 299 (639)
T PLN02829 239 NEKLKAMEQTLAKGK----QMQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGL 299 (639)
T ss_pred HHHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Confidence 344555555544443 3457889999999999999999999999999999999888888875
No 184
>PRK14161 heat shock protein GrpE; Provisional
Probab=23.10 E-value=6.3e+02 Score=23.84 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=22.9
Q ss_pred hcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHHH
Q psy9761 10 TEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQS 57 (420)
Q Consensus 10 ~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~qs 57 (420)
.+|-+..+++.+....+.|+.+=+|+ | |+. -.++.++|+++.
T Consensus 26 ~ei~~l~~e~~elkd~~lR~~AefeN-~-----rkR~~ke~~~~~~~a~~~ 70 (178)
T PRK14161 26 PEITALKAEIEELKDKLIRTTAEIDN-T-----RKRLEKARDEAKDYAIAT 70 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHHH
Confidence 34445555666666666776666663 3 333 345555555443
No 185
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.97 E-value=1.4e+02 Score=25.51 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 63 YQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 63 yqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
-|++.|-.+ .+-||.|+++|..+..+|+.|..
T Consensus 26 ~qV~dv~~n-~~~LDa~~~qL~~l~tkV~~Iq~ 57 (94)
T PHA03386 26 TQLNGLEED-SQPLDGLPAQLTELDTKVSDIQS 57 (94)
T ss_pred HHHHHHHhc-chhhhhHHHHHHHHHHHHHHHHH
Confidence 355555555 66799999999999999999987
No 186
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.27 E-value=2.7e+02 Score=23.74 Aligned_cols=23 Identities=9% Similarity=0.117 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q psy9761 42 NKRMALEETKNYTTQSLASVAYQ 64 (420)
Q Consensus 42 dk~~aleetk~y~~qsLasVayq 64 (420)
.+.+.|++.++|....|..+--+
T Consensus 81 ~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 81 LRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665555554443
No 187
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.23 E-value=5.6e+02 Score=22.76 Aligned_cols=78 Identities=15% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9761 17 TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIG 94 (420)
Q Consensus 17 ~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~ 94 (420)
..|......|..-.+-+|........+..+++..-.-+..+|-.....+..+-..+-+.-..-..+|++-|-+|..|.
T Consensus 69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555455556666666666666666666677777666666666666667777776666553
No 188
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=21.94 E-value=8.6e+02 Score=25.74 Aligned_cols=32 Identities=13% Similarity=0.120 Sum_probs=24.7
Q ss_pred HHHHHhhcchhhHHHHHHhHHhHHHHHHHHhhhcc
Q psy9761 4 LASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYF 38 (420)
Q Consensus 4 l~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~ 38 (420)
..+.|++++...+++|.+...+|. +|=.+|-+
T Consensus 162 ~~~fl~~ql~~~~~~L~~ae~~l~---~f~~~~~~ 193 (498)
T TIGR03007 162 AQRFIDEQIKTYEKKLEAAENRLK---AFKQENGG 193 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCcc
Confidence 457788899999999999988886 66555543
No 189
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=21.91 E-value=2.7e+02 Score=24.93 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=15.5
Q ss_pred hhcchhhHHHHHHhHHhHHHHHHHHhhhc
Q psy9761 9 TTEIPEGRTSLLDSHSNLEKVAEYCEGNY 37 (420)
Q Consensus 9 ~~~ip~~r~~L~~~~~nL~~vA~YCe~nY 37 (420)
+.+|-...+++.+....+.+..+=++ ||
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~e-n~ 44 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFE-NY 44 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44455555556666666665555555 44
No 190
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=21.83 E-value=1.4e+02 Score=21.65 Aligned_cols=22 Identities=14% Similarity=0.401 Sum_probs=18.1
Q ss_pred ccCCCCEEEEEEecCCCeeEEEE
Q psy9761 382 SFQESAVIYVLKKNDDGWWEGVM 404 (420)
Q Consensus 382 Sf~kGDiI~Vl~k~~~GWweG~~ 404 (420)
.|+.|+++.+.. .++.|+.++.
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I 23 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARI 23 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEE
Confidence 478898888877 7888999886
No 191
>KOG0933|consensus
Probab=21.82 E-value=9.5e+02 Score=28.95 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=33.5
Q ss_pred hHHHHHHhhcchhhHHHHHHhHHhHHHHHHHHh-----------hhccCCchhHH
Q psy9761 2 AELASLLTTEIPEGRTSLLDSHSNLEKVAEYCE-----------GNYFQADNKRM 45 (420)
Q Consensus 2 ~el~~~~~~~ip~~r~~L~~~~~nL~~vA~YCe-----------~nY~~~~dk~~ 45 (420)
.|+..||++||-..+..|++-+++..+.+.-|- --|++...|++
T Consensus 193 kEi~~lL~eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~ 247 (1174)
T KOG0933|consen 193 KEINTLLREEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRK 247 (1174)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999888776664332 35666655554
No 192
>PF14992 TMCO5: TMCO5 family
Probab=21.68 E-value=7e+02 Score=25.41 Aligned_cols=74 Identities=24% Similarity=0.184 Sum_probs=46.6
Q ss_pred hhhHHHHHHhHHhHHHHHHHHhhhc-------------cCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q psy9761 13 PEGRTSLLDSHSNLEKVAEYCEGNY-------------FQADN--KRMALEETKNYTTQSLASVAYQINTLAYN------ 71 (420)
Q Consensus 13 p~~r~~L~~~~~nL~~vA~YCe~nY-------------~~~~d--k~~aleetk~y~~qsLasVayqIn~lA~~------ 71 (420)
-.++++|..--..|++-+++--+|- ++-++ -+..++++|.-.-|++.+||+|=+.++.-
T Consensus 62 e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~~~~e~~~~~~~lq~sk~~lqql~~~~~~qE~ei~kve~d~~~ 141 (280)
T PF14992_consen 62 ETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETNVQCEDPQLSQSLQFSKNKLQQLLESCASQEKEIAKVEDDYQQ 141 (280)
T ss_pred HHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCCCCCCccchhcccHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666677777777762221 22222 34678999999999999999987777654
Q ss_pred HHHHHHHHHHHHHHH
Q psy9761 72 FLQLLDLQTAQLEEM 86 (420)
Q Consensus 72 ll~lLd~Q~~~~~~~ 86 (420)
+-++.+-|+..+.++
T Consensus 142 v~~l~eDq~~~i~kl 156 (280)
T PF14992_consen 142 VHQLCEDQANEIKKL 156 (280)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555544433
No 193
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=21.63 E-value=6e+02 Score=26.03 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9761 59 ASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNH 92 (420)
Q Consensus 59 asVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~ 92 (420)
+.-.|+.|. ..++++|+.|..-++....-++.
T Consensus 375 ~~~~y~~G~--~~~~dvl~a~~~l~~a~~~~~~a 406 (446)
T PRK09465 375 TEAGYEVGT--RTIVDVLDATTTLYDAKQQLSNA 406 (446)
T ss_pred HHHHHHccc--chHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 45678888877655544444443
No 194
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=21.50 E-value=5e+02 Score=25.40 Aligned_cols=57 Identities=18% Similarity=0.185 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hceeeccccccccc
Q psy9761 52 NYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ-IGVLTANKTTNRQY 109 (420)
Q Consensus 52 ~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q-ig~lt~~k~~~r~~ 109 (420)
++|.++|...++.=+.+.. +-.-++.+.+++.+|+.+|..|-+ |..+.+-|...+..
T Consensus 85 ~LAr~al~~~~~le~~~~~-~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 85 DLAREALEEKQSLEDLAKA-LEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666655444443 367777788888888888888777 66666655544433
No 195
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=21.42 E-value=6.9e+02 Score=28.76 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.1
Q ss_pred HHHhhcchhhHHHHHHhHHhHHHHHHHHhhhccC
Q psy9761 6 SLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQ 39 (420)
Q Consensus 6 ~~~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~ 39 (420)
.||+++|-.+|........+|..++.--|..-.+
T Consensus 499 ~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~ 532 (739)
T PF07111_consen 499 RLIQQEVGRAREQGEAERQQLSEVAQQLEQELQE 532 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999998888999988888877643
No 196
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=21.40 E-value=4.5e+02 Score=29.85 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 42 NKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 42 dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
+|-+++|.|-.=|. ++-|.+.+++.+|-+||+.--++++..-.+-..+.||++-|+.|.+
T Consensus 254 ~k~~~M~~~l~~ak----~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~l 313 (657)
T PLN02910 254 DQAKAMGHVLSIAK----DQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPL 313 (657)
T ss_pred HHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 35556666555443 5678899999999999999999999999999999999888888875
No 197
>PF01893 UPF0058: Uncharacterised protein family UPF0058; InterPro: IPR002753 These archaebacterial proteins have no known function. Members of the family are about 90-105 amino acid residues long.; PDB: 2GF4_B.
Probab=21.31 E-value=1.5e+02 Score=25.17 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=23.7
Q ss_pred HHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHH
Q psy9761 16 RTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEET 50 (420)
Q Consensus 16 r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleet 50 (420)
.++|...|.-|-.|.+|||.. ......-..+|+.
T Consensus 3 K~ELi~LH~lL~~v~~~~e~~-~~~~~~~~~Y~~L 36 (89)
T PF01893_consen 3 KEELIHLHQLLVEVKKYFEEE-NNDEEDFEEYEEL 36 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-T--TTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-cCCccchhHHHHc
Confidence 578999999999999999972 2333344455543
No 198
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.30 E-value=7.6e+02 Score=23.97 Aligned_cols=43 Identities=7% Similarity=0.158 Sum_probs=25.5
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHH---HHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRM---ALEETKNYTTQ 56 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~---aleetk~y~~q 56 (420)
++.+|-...+++.+....+.|+.+=||+ | |+. -.+++++|+.+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN-~-----RKR~~kE~e~~~~~a~~ 81 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMEN-L-----RKRTQRDVADARAYGIA 81 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHHHH
Confidence 3445555666677777777887777764 3 333 34555555543
No 199
>KOG1314|consensus
Probab=21.12 E-value=60 Score=34.06 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=29.6
Q ss_pred cCCccccCCCCEEEEEEecCCCeeEEEE-------CC----eeeEecCCC-eec
Q psy9761 377 EKDELSFQESAVIYVLKKNDDGWWEGVM-------DG----ITGLFPGNY-VEP 418 (420)
Q Consensus 377 ~~dELSf~kGDiI~Vl~k~~~GWweG~~-------~G----~~G~FPsnY-Ve~ 418 (420)
++--|+|+.||.|.+... -.+|..|.. .+ .+||||.++ ||.
T Consensus 330 ddprisL~p~d~i~~tr~-~~~wlyg~~~l~e~~~E~~~rkiRgwfP~~~a~e~ 382 (414)
T KOG1314|consen 330 DDPRISLPPGDGIKATRG-FNHWLYGEEILSEMFNESRERKIRGWFPRNCAVEK 382 (414)
T ss_pred CCcccccCCCcceeeeee-eecccchhhhhhHHHhhcchhhhcccccccccccc
Confidence 335699999999988876 456888832 22 369999988 543
No 200
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=21.02 E-value=2.6e+02 Score=28.37 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hcee
Q psy9761 51 KNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ-IGVL 99 (420)
Q Consensus 51 k~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q-ig~l 99 (420)
++-+.++.-++|.+||+++..|-++-+.-..+|+..-.+||.|.+ |..|
T Consensus 129 r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~l 178 (322)
T TIGR02492 129 RQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASL 178 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666555555555555555555444 5444
No 201
>PRK14552 C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional
Probab=20.62 E-value=2.1e+02 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy9761 63 YQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ 95 (420)
Q Consensus 63 yqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~q 95 (420)
.+|..++..+++|-+...+-...|++.|+.|.-
T Consensus 232 ~~I~~~a~~I~~L~e~R~~L~~yI~~~M~~iAP 264 (414)
T PRK14552 232 EAIKKLANEILDLYKLREELEDYLETVMKEVAP 264 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 467777888777777777777778888777554
No 202
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=20.54 E-value=5.8e+02 Score=22.85 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=42.6
Q ss_pred HhhcchhhHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy9761 8 LTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAYQINTL--AYNFLQLLDLQT 80 (420)
Q Consensus 8 ~~~~ip~~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVayqIn~l--A~~ll~lLd~Q~ 80 (420)
|..||-..+++|++..+.|.++.+=-++. .. --+.++.+|+.-+..+...|+.- ...|+++|..|-
T Consensus 4 ~~kEi~~l~~~lk~~~~~i~ailek~~s~----~~---~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~q~ 71 (121)
T PF03310_consen 4 IIKEISELIQELKKIESDIKAILEKLQST----EQ---DQENLESIAAKIIKDISDKIDKCECNKELLEALKKQP 71 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCC----Cc---hHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhcCC
Confidence 44566677788888888888775443322 11 23556678888888888888887 678888777654
No 203
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=20.47 E-value=6.8e+02 Score=24.55 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=45.1
Q ss_pred hHHHHHHhHHhHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9761 15 GRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLASVAY-QINTLAYNFLQLLDLQTAQLEEMESQMNH 92 (420)
Q Consensus 15 ~r~~L~~~~~nL~~vA~YCe~nY~~~~dk~~aleetk~y~~qsLasVay-qIn~lA~~ll~lLd~Q~~~~~~~e~~i~~ 92 (420)
..+.|.+.|++|.+...=||.- ...++-+-.+-.....||++++- .-+.|+..|.+|=|.+ +.+++++.++..
T Consensus 28 ek~~l~~~~~~Lk~~~~~~e~l----~~~rk~la~~~~~~s~sl~~L~~~e~t~L~~~l~~laev~-eki~~l~~~~A~ 101 (218)
T cd07662 28 ERTFLLEYHNRVKDSSAKSDRM----TRSHKSAADDYNRIGSSLYTLGTQDSTDICKFFLKVSELF-DKTRKIEARVAA 101 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 3566777777777777766654 12333333333333344444433 3446888888888888 788888888863
No 204
>PRK11032 hypothetical protein; Provisional
Probab=20.30 E-value=7.1e+02 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy9761 43 KRMALEETKNYTTQSLASVAY 63 (420)
Q Consensus 43 k~~aleetk~y~~qsLasVay 63 (420)
++.=++..++|..+=|...|.
T Consensus 44 T~dEl~lv~~ylkRDL~ef~~ 64 (160)
T PRK11032 44 TRDEVDLITRAVRRDLEEFAR 64 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 455566666676666666554
No 205
>PLN02718 Probable galacturonosyltransferase
Probab=20.11 E-value=3.9e+02 Score=30.04 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhceeeccccc
Q psy9761 42 NKRMALEETKNYTTQSLASVAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTT 105 (420)
Q Consensus 42 dk~~aleetk~y~~qsLasVayqIn~lA~~ll~lLd~Q~~~~~~~e~~i~~l~qig~lt~~k~~ 105 (420)
+|-+++|.+..=|. ++-|.+.+++.+|-.||+.--++++..-.+-..+.||++-|+.|.+
T Consensus 222 ~~~~~m~~~~~~a~----~~~~d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~l 281 (603)
T PLN02718 222 QRMKSMEVTLYKAS----RVFPNCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGL 281 (603)
T ss_pred HHHHHHHHHHHHHH----hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 34444444443333 4567899999999999999999999999999999998888888775
Done!