RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9761
(420 letters)
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A
{Homo sapiens}
Length = 159
Score = 200 bits (509), Expect = 2e-63
Identities = 94/158 (59%), Positives = 116/158 (73%), Gaps = 13/158 (8%)
Query: 1 MAELASLLTTEIPEGRTSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTTQSLAS 60
MAEL LL EIP GR +L DS++NLE+VA+YCE NY Q+ +K+ ALEETK YTTQSLAS
Sbjct: 2 MAELQMLLEEEIPGGRRALFDSYTNLERVADYCENNYIQSADKQRALEETKAYTTQSLAS 61
Query: 61 VAYQINTLAYNFLQLLDLQTAQLEEMESQMNHIGQ-------------IGVLTANKTTNR 107
VAY INTLA N LQ+LD+Q +QL MES +NHI Q IG+LT NK T+R
Sbjct: 62 VAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVARREIGILTTNKNTSR 121
Query: 108 QYKIIAPANPEKPIKYVRKPIDLNALDDIGHGVRNAPR 145
+KIIAPAN E+P++Y+RKPID LDDIGHGV+ + +
Sbjct: 122 THKIIAPANLERPVRYIRKPIDYTILDDIGHGVKVSTQ 159
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 82.2 bits (204), Expect = 5e-20
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
DEL+ +I ++K D GWWEG ++G GLFP N+V
Sbjct: 14 HDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREI 56
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 80.7 bits (200), Expect = 2e-19
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
DEL+F+E I V +K+ GWWEG ++G G P NYV+
Sbjct: 16 TGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 80.7 bits (200), Expect = 2e-19
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+DELSF + VI+V + + GWWEG +G TG FP NYV
Sbjct: 17 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 80.9 bits (200), Expect = 2e-19
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 12/64 (18%)
Query: 368 PGWVPKNYIEK------------DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNY 415
P W P++Y+EK DELSFQE A+IYV+KKNDDGW+EGVM+G+TGLFPGNY
Sbjct: 9 PPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNY 68
Query: 416 VEPC 419
VE
Sbjct: 69 VESI 72
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 80.3 bits (199), Expect = 2e-19
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
+ ++L FQE +I VL K ++ W EG G G+FP +VE
Sbjct: 18 QPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS 60
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 80.0 bits (198), Expect = 3e-19
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
+DELSF + VI+V + + GWWEG +G TG FP NYV
Sbjct: 19 NEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIK 62
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 79.5 bits (197), Expect = 5e-19
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
+ +L + + +L+K W++G +G TG+FP NYV+P
Sbjct: 15 QDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA 57
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 79.5 bits (197), Expect = 5e-19
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
E+DEL F+ V+ VL ++ WW G + GLFP NYV P +
Sbjct: 14 EEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM 57
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 79.1 bits (196), Expect = 6e-19
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL+F+ VI ++ K+D WWEG ++ G+FP NYV P
Sbjct: 15 ESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP 56
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 79.1 bits (196), Expect = 6e-19
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DEL F+E +IY+ +D WW+G G TGL P NYV
Sbjct: 16 TPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 78.8 bits (195), Expect = 7e-19
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ DELSF + +I ++K++ GWW G + G GLFP NYV
Sbjct: 18 DTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 78.8 bits (195), Expect = 9e-19
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL F+ I+V+ +D WW+G G TG+FP NYV
Sbjct: 15 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 78.4 bits (194), Expect = 1e-18
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
E +EL+F+ +I VL +D WW+G TGLFP N+V
Sbjct: 18 EDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 58
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 78.4 bits (194), Expect = 1e-18
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418
++DE+SF++ I ++ DDGW G + G TG+ P NY+E
Sbjct: 19 DEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 78.5 bits (194), Expect = 2e-18
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
KDE+ F++ + V++KN +GWW G G P +Y++
Sbjct: 21 SKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKK 62
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 78.1 bits (193), Expect = 2e-18
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
DEL ++ V+ + +DGWW +G G PG+Y+E
Sbjct: 21 NPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 78.0 bits (193), Expect = 2e-18
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
DEL F+E +IY+ +D WW+G G TGL P NYV
Sbjct: 20 TPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ 62
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 78.0 bits (193), Expect = 2e-18
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
K+EL +++VLKK +D W + +G GL P NY+EP
Sbjct: 20 TKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 77.6 bits (192), Expect = 2e-18
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVEPC 419
DEL+ + +I +KK ++GW EG ++G G+FP N+V+
Sbjct: 14 HDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI 57
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 77.3 bits (191), Expect = 3e-18
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGL-FPGNYVEPCV 420
+DEL+F +SA+I ++K D GWW G G L FP NYVE +
Sbjct: 16 REDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI 60
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 77.3 bits (191), Expect = 3e-18
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+DEL + +I + ++ ++GWW G ++ GLFP N+V+
Sbjct: 14 NEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 55
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 77.3 bits (191), Expect = 3e-18
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
DEL + +I V+ + ++GWWEGV++G TG+FP N+++
Sbjct: 20 NDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 77.3 bits (191), Expect = 3e-18
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DE+SF +I ++ DDGWW GV G GLFP NYVE
Sbjct: 22 GDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 62
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 76.9 bits (190), Expect = 5e-18
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
ELSF++ A + + + + WWEG +GI GL P Y+
Sbjct: 19 SARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV 59
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 76.9 bits (190), Expect = 5e-18
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+DEL + +I + ++ ++GWW G ++ GLFP N+V+
Sbjct: 20 NEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 77.0 bits (190), Expect = 6e-18
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
+DELS + +IYV + + GWWEG ++G TG FP NYV
Sbjct: 23 NEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI 65
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 76.5 bits (189), Expect = 7e-18
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVEP 418
+DEL+F+E +I+++ K + GWW+G ++G G+FP N+
Sbjct: 19 NEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 76.6 bits (189), Expect = 8e-18
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
DE+SF +I ++ DDGWW GV G GLFP NYVE
Sbjct: 30 GDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVE 70
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 76.2 bits (188), Expect = 9e-18
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E ELS Q V+ V++KN+ GWW G P Y+E
Sbjct: 21 ENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEA 62
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 75.6 bits (187), Expect = 1e-17
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPGNYVE 417
DE+S +I V++ +D GW G DG+ GLFP +Y +
Sbjct: 13 GDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK 54
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 75.6 bits (187), Expect = 1e-17
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
K EL+F+ VI++L + + W EG + G TG+FP ++V+
Sbjct: 17 SKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 75.8 bits (187), Expect = 1e-17
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDG-ITGLFPGNYVEP 418
DEL+F A+I+ + K GWW+G I FP NYVE
Sbjct: 20 RSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 75.4 bits (186), Expect = 1e-17
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
++ +LSF I +L++ WW G G G P N+V
Sbjct: 20 DETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGK 61
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 75.8 bits (187), Expect = 2e-17
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
ELSF++ A + + ++ D WWEG +GI GL P Y+
Sbjct: 22 TARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 75.3 bits (186), Expect = 2e-17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
EL Q+ ++Y+ K+ D W+EG G G+FP Y+E
Sbjct: 20 TLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELL 62
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 74.2 bits (183), Expect = 3e-17
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
EL+ ++ ++ +L + WW+ ++G G P Y++
Sbjct: 19 SPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 74.7 bits (184), Expect = 4e-17
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
E +EL+F+ +I VL +D WW+G GLFP N+V
Sbjct: 30 EDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT 70
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 74.2 bits (183), Expect = 4e-17
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
EL+ Q+ ++Y+ K+ D W EG G G+FP NYVE
Sbjct: 14 SPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 75.2 bits (185), Expect = 4e-17
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+DELS + + V++K DGWW G +G G FP NYV
Sbjct: 30 REDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTE 71
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 74.3 bits (183), Expect = 4e-17
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGL-FPGNYVEPC 419
+DEL+F +SA+I ++K + GWW G G L FP NYVE
Sbjct: 19 REDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEM 62
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 74.3 bits (183), Expect = 6e-17
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
+ DEL+ ++ ++ + +K ++GWW G ++G G FP YVE
Sbjct: 20 QDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEEL 62
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 73.8 bits (182), Expect = 6e-17
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+L F + VI + ++ D+ W++G ++G++G+FP + VE
Sbjct: 20 NPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 73.7 bits (182), Expect = 6e-17
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKND--DGWWEGVMDGITGLFPGNYVEP 418
E +L F++ VI +LKK+D + WW G ++G G+FP NYVE
Sbjct: 16 ESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 73.9 bits (182), Expect = 6e-17
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 377 EKDELSFQESAVIYVLKK---NDDGWWEGVMDGITGLFPGNYVEPC 419
DELSF E A+I +L K +DDG+WEG +G G+FP VE
Sbjct: 21 TDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEEL 66
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 74.8 bits (184), Expect = 6e-17
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 29/81 (35%)
Query: 369 GWVPKNYIEK-----------------------------DELSFQESAVIYVLKKNDDGW 399
GW P ++++ DELSF + +I V+ K+D W
Sbjct: 10 GWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDW 69
Query: 400 WEGVMDGITGLFPGNYVEPCV 420
W+G ++G+TGLFP NYV+
Sbjct: 70 WQGEINGVTGLFPSNYVKMTT 90
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 73.8 bits (182), Expect = 6e-17
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E ++L + +I +L+ +++ WW+G + G FP N+V+
Sbjct: 20 ENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRL 62
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 73.0 bits (180), Expect = 1e-16
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGV--MDGITGLFPGNYVEP 418
DEL + + V + +D W+E G G+FP Y
Sbjct: 18 DELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 73.4 bits (181), Expect = 1e-16
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418
+DEL +E + V+++ DDGW+ GV G FPGNYV P
Sbjct: 20 NEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 73.1 bits (180), Expect = 1e-16
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E +L+F E I V +K D WW G + +G+FP NYV+P
Sbjct: 21 EPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPK 62
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 73.0 bits (180), Expect = 1e-16
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV--MDGITGLFPGNYVEPC 419
+EL Q+ I VL K DGW +G+ + G TG+FP +YV P
Sbjct: 20 RPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPV 64
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 72.7 bits (179), Expect = 2e-16
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 377 EKDELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVEPCV 420
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 15 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 60
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 72.7 bits (179), Expect = 2e-16
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVEPC 419
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 20 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 71.8 bits (177), Expect = 3e-16
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEGVM-DGITGLFPGNYVEP 418
E+DELSF+ + L + D GW G + G GL+P NYVE
Sbjct: 16 EQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA 59
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 72.3 bits (178), Expect = 3e-16
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ DEL F+++ +I ++ + D+ W G ++G+ G FP +VE
Sbjct: 20 DDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV 61
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 72.1 bits (177), Expect = 3e-16
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ D L ++ +I ++ K G W G+++ G F YV+
Sbjct: 24 DTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDV 65
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 72.0 bits (177), Expect = 4e-16
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 379 DELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVEPC 419
ELS +E V+ + + D GWW+G +G G FP YVE
Sbjct: 22 RELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE 64
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 71.6 bits (176), Expect = 4e-16
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 377 EKDELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVEPCV 420
DEL+ +E ++ ++ K+ D GWWEG ++G G+FP N+V+
Sbjct: 22 NDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP 67
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 71.5 bits (176), Expect = 5e-16
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVI-YVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
ELSF V V + GW EG ++G TGL P NYVE
Sbjct: 23 HDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 72.1 bits (177), Expect = 5e-16
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
E +EL+F+ +I VL +D WW+G GLFP N+V +
Sbjct: 30 EDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNL 73
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 71.1 bits (175), Expect = 5e-16
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVE 417
+EL E ++++ K+ GW TGL P +V
Sbjct: 16 NELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 56
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 71.6 bits (176), Expect = 5e-16
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
ELSF+ V+ + ++ WW G +G+ GL P Y+
Sbjct: 23 TAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITL 64
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 72.1 bits (177), Expect = 5e-16
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
DEL + +I V+ + ++GWWEGV++G TG+FP N+++
Sbjct: 31 NDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 72
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 71.3 bits (175), Expect = 6e-16
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 374 NYIEKDELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPGNYVEPC 419
N + EL+F +I V + D DG++ G ++G GL P N++E
Sbjct: 24 NVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEV 70
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 71.1 bits (175), Expect = 6e-16
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ EL F+E +I + + D+ W+EG++ G +G FP NYVE
Sbjct: 16 NQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 70.7 bits (174), Expect = 6e-16
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEPC 419
E +EL+F E+ I ++ DD WW G + DG GLFP NYV
Sbjct: 13 EDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG 57
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 71.1 bits (175), Expect = 7e-16
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
EL F+E +I + + D+ W+EG++ G +G FP +YV+
Sbjct: 26 NDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQ 66
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 70.8 bits (174), Expect = 7e-16
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 371 VPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
VP Y +K L+ + ++ V K N G WEG +G G FP +V
Sbjct: 16 VPNAY-DKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVR 61
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 71.1 bits (175), Expect = 7e-16
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
+ EL F+E +I + + D+ W+EG++ G +G FP NYVE
Sbjct: 20 NEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVE 60
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 70.9 bits (174), Expect = 8e-16
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 368 PGWVPKNYIEKDELSFQESAVIYVL-KKNDDGWWEGVMDGITGLFPGNYVEPC 419
PG K L+ + V+ V +D G++ G + G GL P + ++
Sbjct: 18 PGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM 70
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 70.8 bits (174), Expect = 1e-15
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 18 SPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 60
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 70.4 bits (173), Expect = 1e-15
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+K L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 16 DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 57
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 70.4 bits (173), Expect = 1e-15
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEP 418
DEL+ +I V K+++ WW G + G G FP N+V
Sbjct: 19 RSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS 61
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 70.4 bits (173), Expect = 1e-15
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKN---DDGWWEGVMDGITGLFPGNYVEP 418
DEL+F ++ +L+++ +GWW+ ++ G GL P N ++
Sbjct: 20 CSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 70.5 bits (173), Expect = 1e-15
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
EL+F+ VI VL ++ WW G +D G FP ++V V
Sbjct: 23 ANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWV 66
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 70.0 bits (172), Expect = 1e-15
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGV--MDGITGLFPGNYVEP 418
DEL + + V + +D W+E G G+FP Y
Sbjct: 21 DELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 62
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 69.1 bits (170), Expect = 2e-15
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEP 418
++++L F++ ++ + K ++ WW +G G+ P YVE
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 69.8 bits (171), Expect = 2e-15
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ E+SF + VL+K + GWW + G P +Y+
Sbjct: 21 QDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVL 62
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 69.7 bits (171), Expect = 2e-15
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGI---TGLFPGNYVEP 418
DEL+F E VI V + D WW G ++G G+FP ++V
Sbjct: 23 NDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 69.2 bits (170), Expect = 2e-15
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
+ +L+F++ ++ V++K DGWW G GL P Y+EP
Sbjct: 23 QVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEP 65
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 69.8 bits (171), Expect = 3e-15
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDG-----ITGLFPGNYVEP 418
++LS +I +LKKN GWW+G + G FP ++V+
Sbjct: 22 EQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 69.3 bits (170), Expect = 3e-15
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWW--EGVMDGITGLFPGNYVE 417
+EL E ++++ K+ GW E TGL P +V
Sbjct: 20 NELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVS 60
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 71
Score = 68.9 bits (169), Expect = 3e-15
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+ DE+SF + + V + +DGW + GL + VE
Sbjct: 21 DTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE 64
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 68.8 bits (169), Expect = 4e-15
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEP 418
++++L F++ ++ + K ++ WW +G G+ P YVE
Sbjct: 16 DEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 58
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 69.2 bits (170), Expect = 4e-15
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
K EL+F+ VI++L + + W EG + G TG+FP ++V+
Sbjct: 31 SKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 69.0 bits (169), Expect = 5e-15
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKN--DDGWWEGVMDGITGLFPGNYVEPC 419
LSF +I +L + GW G G +GLFP + V+P
Sbjct: 21 NCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPA 65
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 68.0 bits (167), Expect = 7e-15
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGI--TGLFPGNYVEP 418
+ E+SF++ I +L++ D+ W+EG + G G+FP YV+
Sbjct: 20 TQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 68.1 bits (167), Expect = 7e-15
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKND---DGWWEGVMDGITGLFPGNYVEP 418
DELSF++ ++ VL+++ DGWW + G G+ PGN ++
Sbjct: 16 SPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKI 60
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 67.7 bits (166), Expect = 1e-14
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVE 417
DELSF+ ++ VL + D W++ ++G G P NY+E
Sbjct: 22 ADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 63
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 67.2 bits (164), Expect = 1e-14
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+DELS + + V++ DGWW G +G G FP NYV
Sbjct: 14 REDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLE 55
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 67.9 bits (166), Expect = 1e-14
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+K L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 31 DKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKI 72
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2
domain, SRC homology 3, RAS signaling pathway, proto-
oncogene, phosphorylation; 1.5A {Homo sapiens} PDB:
2j06_A
Length = 65
Score = 67.1 bits (164), Expect = 1e-14
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEPC 419
+ DE+SF + + V + +DGW + GL + VE
Sbjct: 19 DTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 67.4 bits (165), Expect = 2e-14
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418
+ DE++ Q++ V+ VL++ +DGW G DG TG FP ++
Sbjct: 30 QADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARF 72
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 66.6 bits (163), Expect = 2e-14
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 4 REVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 44
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 67.0 bits (164), Expect = 2e-14
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDD--GWWEGVMDGITGLFPGNYVEPC 419
+ +L+FQ I V+ K D WWEG + G TG+FP NYV
Sbjct: 30 QPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMN 74
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 66.6 bits (163), Expect = 2e-14
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ + L+F + +I VL++ + WW G + G G FP +YV+
Sbjct: 23 KDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKI 63
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 66.1 bits (162), Expect = 3e-14
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418
EL ++ VIY+ ++ GW G + G P Y++P
Sbjct: 14 SPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP 57
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 66.7 bits (163), Expect = 3e-14
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 30 SPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 72
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 66.2 bits (162), Expect = 3e-14
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDG-----ITGLFPGNYVE 417
+D+L+F++ I V D W+ G I G+FP ++V
Sbjct: 20 YEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVA 65
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 72.9 bits (177), Expect = 4e-14
Identities = 30/194 (15%), Positives = 56/194 (28%), Gaps = 2/194 (1%)
Query: 227 GMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNP 286
G + P E + R + + Q + S +
Sbjct: 291 GPGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSN 350
Query: 287 QMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDH 346
++ ++ P + + S ++ S P S
Sbjct: 351 PAQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSST 410
Query: 347 VNFGQPQAVRNGGIVPRDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDD-GWWEG-VM 404
G + + + E DELSF+ + ++ D+ GW +G +
Sbjct: 411 DANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD 470
Query: 405 DGITGLFPGNYVEP 418
+G GL+P NYVE
Sbjct: 471 NGQVGLYPANYVEA 484
Score = 39.4 bits (90), Expect = 0.002
Identities = 25/199 (12%), Positives = 41/199 (20%), Gaps = 18/199 (9%)
Query: 196 PPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQ 255
P + R G+ + P
Sbjct: 292 PGMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNP 351
Query: 256 FSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMS 315
AQ Q +S + +S+ P + S
Sbjct: 352 AQSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTD 411
Query: 316 QQPPPPPSMQQRSSSPPLPPPPTSA--GQMDDHVNFGQPQAVRNGGIVPRDQDLPGW--- 370
P +S + GQ D ++F + D+D GW
Sbjct: 412 ANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDEL----TKMEDEDEQGWCKG 467
Query: 371 ---------VPKNYIEKDE 380
P NY+E +
Sbjct: 468 RLDNGQVGLYPANYVEAIQ 486
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 66.1 bits (162), Expect = 4e-14
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGI--TGLFPGNYVEPC 419
+ E+SF++ I +L++ D+ W+EG + G G+FP YV+
Sbjct: 19 TQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI 63
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 71.6 bits (174), Expect = 4e-14
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 301 NAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGI 360
+ G + P + P P + P
Sbjct: 180 KLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVF 239
Query: 361 VPRDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
Q VP Y + L+ + ++ V + N +G WEG ++G GLFP +V+
Sbjct: 240 AKAIQK---RVPCAYDK-TALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF 294
Score = 54.2 bits (129), Expect = 2e-08
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEPC 419
+ ++L F++ ++ +++K ++ WW DG G+ P YVE
Sbjct: 138 DAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKL 181
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 65.9 bits (161), Expect = 5e-14
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 15 SPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL 57
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 71.2 bits (173), Expect = 6e-14
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 305 PPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRD 364
P + + + S P P G ++NG I
Sbjct: 183 PVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYA-- 240
Query: 365 QDLPGWVPKNYI----EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
V + + +K L+ + ++ V K N G WEG +G G FP +V
Sbjct: 241 -----RVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL 294
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 64.9 bits (159), Expect = 7e-14
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDG-WWEGVMDGITGLFPGNYVEP 418
+ LS + + VL N +G W E G P Y+ P
Sbjct: 18 GDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITP 60
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 65.4 bits (160), Expect = 8e-14
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P NYV P
Sbjct: 28 TEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 71
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 65.6 bits (160), Expect = 1e-13
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVEPC 419
DE+SF +I V +K + GW G G G FP NYVE
Sbjct: 18 NHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM 62
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 64.7 bits (158), Expect = 1e-13
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 12 GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 53
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 65.3 bits (159), Expect = 1e-13
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGI------TGLFPGNYVEP 418
+ L+ + VI VL+++ DG W+G + G FP VE
Sbjct: 32 DPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV 79
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 65.1 bits (159), Expect = 1e-13
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+LSF + +L+ WWE + G TG P NYV P
Sbjct: 19 RWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAP 62
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 64.3 bits (157), Expect = 1e-13
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWE--------GVMDGITGLFPGNYVEP 418
E++ ++ ++ +L + WW+ G G P YV+
Sbjct: 14 SPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK 63
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 64.3 bits (157), Expect = 2e-13
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVL-KKNDDGWWEG--VMDGITGLFPGNYVEP 418
K LSF + VI +L + DGW G + G FP +Y +
Sbjct: 20 NKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 63.5 bits (155), Expect = 3e-13
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 377 EKDELSFQESAVIYVL-KKNDDGWWEGVM--DGITGLFPGNYVEPC 419
K LSF + V+ +L + DGW G G FP +Y +
Sbjct: 21 NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 63.6 bits (155), Expect = 3e-13
Identities = 13/43 (30%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKK--NDDGWWEGVMDGITGLFPGNYVE 417
ELS VI V D W G G P Y+E
Sbjct: 30 NSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLE 72
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 63.0 bits (154), Expect = 4e-13
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
E +L + +L+KND WW G G P NYV
Sbjct: 15 EAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTG 57
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 68.7 bits (167), Expect = 4e-13
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 11/112 (9%)
Query: 306 PSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQ 365
+ + S+ +++ + +A VP
Sbjct: 202 IQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAY 261
Query: 366 DLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
D +L ++ + V +K +G ++ +DG G P Y+
Sbjct: 262 D-----------PTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLR 302
Score = 57.9 bits (139), Expect = 1e-09
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEPC 419
+ +L F++ + +L K + WWE G TGL P NYV+
Sbjct: 160 RETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQ 203
Score = 29.4 bits (65), Expect = 2.3
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E DE + +I + +DG + FP
Sbjct: 84 EADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLN 126
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 65.5 bits (159), Expect = 4e-13
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVL-KKNDDGWWEGVMDGITGLFPGNYVEPC 419
++ ELS +E +I +L KK GWW G + G G FP NYVE
Sbjct: 18 DRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEED 61
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 63.7 bits (155), Expect = 5e-13
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 379 DELSFQESAVIYVLKKN----DDGWWEGV--MDGITGLFPGNYVEP 418
DEL I++ +GW G G +GL P NY+
Sbjct: 31 DELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITK 76
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 62.7 bits (153), Expect = 5e-13
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEPC 419
EL ++ ++++ + GW + G P Y+ P
Sbjct: 16 SSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY 60
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 66.6 bits (162), Expect = 5e-13
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 30/81 (37%)
Query: 369 GWVPKNYIE------------------------------KDELSFQESAVIYVLKKNDDG 398
GW+P +++E DE+S E + V+ K DG
Sbjct: 56 GWIPASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG 115
Query: 399 WWEGVMDGITGLFPGNYVEPC 419
WW D +TG FP Y++
Sbjct: 116 WWVIRKDDVTGYFPSMYLQKS 136
Score = 63.5 bits (154), Expect = 5e-12
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
E++ V+ V++K++ GWW M G P +++EP
Sbjct: 24 SGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL 66
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 63.1 bits (154), Expect = 5e-13
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE + G TG P Y+ P
Sbjct: 18 TEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAP 61
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 62.2 bits (152), Expect = 6e-13
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLK-KNDDGWWEG--VMDGITGLFPGNYVEP 418
+DEL+ + +Y+L K WW V G +GL P ++EP
Sbjct: 15 SQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 62.3 bits (152), Expect = 7e-13
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ELS + V+ VL+ W G G P N +
Sbjct: 20 NANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGE 61
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 62.3 bits (152), Expect = 8e-13
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
++L ++ ++L++++ WW +G G P NYV
Sbjct: 21 NANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 62.9 bits (153), Expect = 9e-13
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 377 EKDELSFQESAVIYVLKK-----NDDGWWEG-VMDGITGLFPGNYVEP 418
+EL+ + + VL + D+GWW G + G G+FP NYV P
Sbjct: 42 GDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 62.0 bits (151), Expect = 1e-12
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMD-----GITGLFPGNYVEP 418
+ELSF+ V +V +K + WW ++D G P NY+
Sbjct: 25 EELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAE 69
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 62.8 bits (153), Expect = 1e-12
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVE 417
+ ELSF++ I +++K ++ W+EG + G G+FP +YV+
Sbjct: 30 LEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQ 72
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 62.2 bits (151), Expect = 2e-12
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPGNYVEP 418
P ++EL F+E +I V D DG++ G GL P N V
Sbjct: 33 PNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSE 80
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 61.8 bits (150), Expect = 2e-12
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 379 DELSFQESAVIYVLKKND-DGWWEG-VMDGITGLFPGNYVEPC 419
EL +YV D DG++EG ++DG GL P N+V+
Sbjct: 38 AELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFV 80
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 60.8 bits (148), Expect = 2e-12
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 379 DELSFQESAVIYVL-KKNDDGWWEGVMD--GITGLFPGNYVEP 418
LSF+E +I +L + DGW G + + G FP +Y
Sbjct: 23 TLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 60.9 bits (148), Expect = 3e-12
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG---------VMDGITGLFPGNYVEP 418
++LSF+ + VL + +GWW + + G P NYV
Sbjct: 20 TAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE 70
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 60.8 bits (148), Expect = 3e-12
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEPC 419
+ E+SF+++ ++ V + WW+ +G TG+ P NYV+
Sbjct: 20 DAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLI 62
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 60.6 bits (147), Expect = 4e-12
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 379 DELSFQESAVIYVLKKNDDGWW----EGVMDGITGLFPGNYVEP 418
+ FQE + VL++N +GWW + G P NY+E
Sbjct: 24 ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 60.5 bits (147), Expect = 4e-12
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 377 EKDELSFQESAVIYVLKKND----DGWWEGVMDGITGLFPGNYVEPC 419
+ELS + + +L+ D WW ++G G P NY+
Sbjct: 26 NPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT 72
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 60.5 bits (147), Expect = 4e-12
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKK-NDDGWWEGVMDGITGLFPGNYVEP 418
+ L F+ + +I + K ++ W+ G ++G G FP ++VE
Sbjct: 23 DTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEI 65
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 63.3 bits (153), Expect = 5e-12
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 11/116 (9%)
Query: 307 SQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQD 366
Y + + + ++ P P V + +
Sbjct: 63 CHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASL------LAAYKKP 116
Query: 367 LPGWVPKNY----IEKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVE 417
+ V + + +L F++ + +L K + WWE G TGL P NYV+
Sbjct: 117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQ 172
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 60.0 bits (146), Expect = 5e-12
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
EL+ + + VL + W G +G P N +EP
Sbjct: 20 NPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEP 61
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 59.9 bits (145), Expect = 7e-12
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 4 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 45
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 66.4 bits (161), Expect = 8e-12
Identities = 28/160 (17%), Positives = 42/160 (26%), Gaps = 7/160 (4%)
Query: 209 IGHPKRER------GPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQ 262
+ H K+ G P +PP P Q S+ QQQ
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60
Query: 263 QQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPP 322
L QQ + N+ + N + + P QQP P
Sbjct: 61 FLTPA-QEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Query: 323 SMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVP 362
+ Q S++ P + D + P P
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPP 159
Score = 62.9 bits (152), Expect = 1e-10
Identities = 33/213 (15%), Positives = 48/213 (22%), Gaps = 5/213 (2%)
Query: 191 PPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPR 250
PQ Y N + P + PP +P QQQ
Sbjct: 4 HKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63
Query: 251 SHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQ 310
Q Q + HL ++ N PQ+ Q P+ Q
Sbjct: 64 PAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQ 123
Query: 311 AGMMSQQPPPPPSM---QQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDL 367
Q P + + P P + + + D
Sbjct: 124 PSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIR 183
Query: 368 PGW--VPKNYIEKDELSFQESAVIYVLKKNDDG 398
VPKN + VI + D
Sbjct: 184 STLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDD 216
Score = 49.1 bits (116), Expect = 2e-06
Identities = 23/141 (16%), Positives = 36/141 (25%), Gaps = 13/141 (9%)
Query: 240 MPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQP 299
M H ++ P++ A QQ AQ Q + G + + Q
Sbjct: 1 MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPP-QDPAAAGMSYGQMGMPPQGAVPSMGQQ 59
Query: 300 PNAHPPPSQYQAGMMSQQP-PPPPSMQQRSSSPP-----------LPPPPTSAGQMDDHV 347
P Q + + P + P Q
Sbjct: 60 QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119
Query: 348 NFGQPQAVRNGGIVPRDQDLP 368
+GQP A + P +Q P
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYP 140
Score = 41.7 bits (97), Expect = 4e-04
Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 8/155 (5%)
Query: 160 PGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPG 219
P PP P+ + P++ Q + +
Sbjct: 22 PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81
Query: 220 YGTLPQVGMVHP---LPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQ 276
L V +V P + P P M QQQ + Q A + +++
Sbjct: 82 DMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQ-----PMAAPAYGQPSAAMGQNMRPMN 136
Query: 277 MMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQA 311
+ P PP PP
Sbjct: 137 QLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171
Score = 41.0 bits (95), Expect = 8e-04
Identities = 11/149 (7%), Positives = 24/149 (16%)
Query: 151 PSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIG 210
P + PS+ + + A + + N P+
Sbjct: 32 PQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLV 91
Query: 211 HPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAH 270
P P + P +
Sbjct: 92 DPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPI 151
Query: 271 HLQQQQMMSANMGNNPQMGNSHMANNPQP 299
+ + S ++N
Sbjct: 152 TDLTLPPPPLVIPPERMLVPSELSNASPD 180
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 59.3 bits (144), Expect = 1e-11
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDD-GWWEGVM-DGITGLFPGNYVE 417
+EL+ E +I V N GW EG G GL P +YVE
Sbjct: 23 GNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVE 65
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 58.4 bits (142), Expect = 2e-11
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
D+LSF++ + VL+++ + WW+ ++ G P NYV
Sbjct: 20 HPDDLSFKKGEKMKVLEEHGE-WWKAKSLLTKKEGFIPSNYVAK 62
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 59.4 bits (144), Expect = 2e-11
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 377 EKDELSFQESAVIYVLKKNDD----GWWEGVMDG-ITGLFPGNYVE 417
+E+SF+ ++ + K GW +DG TGL P NYV+
Sbjct: 30 SDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVK 75
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 58.5 bits (142), Expect = 2e-11
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKK--NDDGWWEGV-MDGITGLFPGNYVEP 418
++EL+F++ + V++K ND WW+ G GL P NYV
Sbjct: 19 TEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 62.0 bits (150), Expect = 2e-11
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 362 PRDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ + + E EL F+ I+V+ +D WW+G G TG+FP NYV P
Sbjct: 156 QQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 212
Score = 51.2 bits (122), Expect = 1e-07
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 376 IEKDELSFQESAVIYVLKKNDD-GWWEGVMDGITGLFPGNYVEPC 419
DELSF+ ++ VL + D W++ ++G G P NY+E
Sbjct: 12 TADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 58.0 bits (141), Expect = 3e-11
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 377 EKDELSFQESAVIYVL-KKNDDGWWEG--VMDGITGLFPGNYVEPC 419
+DEL+ + +Y+L K WW V G +GL P ++EP
Sbjct: 19 SQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV 64
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 57.6 bits (140), Expect = 3e-11
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 379 DELSFQESAVIYVLKKND-DGWWE--GVMDGITGLFPGNYVE 417
DE++ I ++ ++ GW + G TGL P Y+
Sbjct: 16 DEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 57
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 56.9 bits (138), Expect = 6e-11
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDD-GWWEG-VMDGITGLFPGNYVEP 418
+ +L F + V+ ++ D W++ G G+ P NYV+
Sbjct: 24 AEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 56.9 bits (138), Expect = 6e-11
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEG-VMDGITGLFPGNYVEP 418
+ +S E + +++++ DGW +G G P +Y+
Sbjct: 20 SEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 56.6 bits (137), Expect = 8e-11
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 379 DELSFQESAVIYVLKKND-----DGWWEG-VMDGITGLFPGNYVEP 418
E++ ++ ++ +L K D WW+ +G G P NY+E
Sbjct: 23 MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 57.5 bits (139), Expect = 1e-10
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM---DGITGLFPGNYVEPCV 420
+ DEL+ +++ ++ W+ G GL P +V
Sbjct: 18 KADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIID 64
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 61.5 bits (148), Expect = 1e-10
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 17/163 (10%)
Query: 275 QQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQ---------YQAGMMSQQPPPPPSMQ 325
Q + G + + P + Q A M S P +
Sbjct: 68 QSKLEERFGPDSKSSALAXTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLM 127
Query: 326 QRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPKNYI--------E 377
P + Q+ + +P+ + + P+ +
Sbjct: 128 DEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNS 187
Query: 378 KDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
K EL+F+ VI++L + + W EG + G TG+FP ++V+
Sbjct: 188 KLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILK 230
Score = 28.4 bits (62), Expect = 4.4
Identities = 11/102 (10%), Positives = 27/102 (26%), Gaps = 9/102 (8%)
Query: 314 MSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPK 373
+ + P ++ + + +++ + R + +
Sbjct: 228 ILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIAL 287
Query: 374 NYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGIT---GLFP 412
NY E ++ +L D G+ LFP
Sbjct: 288 NY------RDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFP 323
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 56.6 bits (137), Expect = 1e-10
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
D+LSFQ+ + VL+++ + WW+ + G P NYV
Sbjct: 16 SPDDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 58
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 55.9 bits (135), Expect = 3e-10
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEPC 419
++LSF++ ++ + WWE + G +G P NYV P
Sbjct: 40 TTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA 84
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 55.2 bits (133), Expect = 4e-10
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 377 EKDELSFQESAVIYVLKK--NDDGWWEGV-MDGITGLFPGNYVEPC 419
++EL+F++ + V++K ND WW+ G GL P NYV
Sbjct: 30 TEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL 75
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 54.7 bits (132), Expect = 5e-10
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEGV-MDGITGLFPGNYVEP 418
+ DEL+ +E V+ V++ D + W + G G P Y++
Sbjct: 26 QPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQF 69
Score = 26.9 bits (60), Expect = 3.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 369 GWVPKNYIEKDELSFQESA 387
G+VP+ Y++ S S
Sbjct: 60 GYVPEKYLQFPTSSGPSSG 78
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 55.9 bits (134), Expect = 5e-10
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 18/109 (16%)
Query: 325 QQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPKNYIEKDELSFQ 384
SS + + + G + + Q + + DEL +
Sbjct: 8 HHHSSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATD---TDELQLK 64
Query: 385 ESAVIYVLKKN-----DDGWWEGV----------MDGITGLFPGNYVEP 418
V+ V+ D+GW GV ++ G+FP N+ E
Sbjct: 65 AGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 113
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 53.8 bits (130), Expect = 7e-10
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+L F++ + +L+++ + WW+ + G G P N+V
Sbjct: 19 HDGDLGFEKGEQLRILEQSGE-WWKAQSLTTGQEGFIPFNFVAK 61
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 54.9 bits (132), Expect = 1e-09
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM---DGITGLFPGNYVE 417
DEL + + D W+ G GL P +YV
Sbjct: 16 RDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVR 59
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 53.6 bits (129), Expect = 1e-09
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 379 DELSFQESAVIYVLKKND-----DGWWEGVM-DGITGLFPGNYVEP 418
E++ ++ ++ +L K D WW+ +G G P NY+E
Sbjct: 30 MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 52.4 bits (126), Expect = 3e-09
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDD-GWWEG--VMDGITGLFPGNYVEP 418
+ EL+F++ V+ +L+ ++ W+ G GL +
Sbjct: 30 KPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRE 74
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 52.8 bits (127), Expect = 3e-09
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
++LSFQ+ + VL+++ + WW+ + G P NYV
Sbjct: 38 HHEDLSFQKGDQMVVLEESGE-WWKARSLATRKEGYIPSNYVAR 80
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 52.5 bits (126), Expect = 4e-09
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 379 DELSFQESAVIYVLKKND-----DGWWEGVM-DGITGLFPGNYVEP 418
E++ ++ ++ +L K D WW+ +G G P NY+E
Sbjct: 30 MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 75
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 51.5 bits (124), Expect = 5e-09
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEP 418
+ EL +++ +++L + WW TG P NYVE
Sbjct: 17 QDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYVER 58
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 52.0 bits (125), Expect = 6e-09
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
+ EL+ + + +L ++ WW +G G P +Y+
Sbjct: 32 DPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVE 74
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 54.9 bits (131), Expect = 7e-09
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 9/135 (6%)
Query: 285 NPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMD 344
N + +P P PS+ + G P + +
Sbjct: 65 NSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVSRSR 124
Query: 345 DHVNFGQPQAVRNGGIVPRDQDLPGWVPKNYIEKDELSFQESAVIYVLKKNDDGWWEG-V 403
Q D N ++++L F++ ++ + K ++ WW
Sbjct: 125 QGSGVILRQEEAEYVRALFDF--------NGNDEEDLPFKKGDILRIRDKPEEQWWNAED 176
Query: 404 MDGITGLFPGNYVEP 418
+G G+ P YVE
Sbjct: 177 SEGKRGMIPVPYVEK 191
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 50.4 bits (121), Expect = 1e-08
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
ELS ++ V+ VL + WW+ G G P N + P
Sbjct: 21 NSSELSVKQRDVLEVLDDSRK-WWKVRDPAGQEGYVPYNILTP 62
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 50.1 bits (120), Expect = 2e-08
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVE 417
+ EL+ + Y+L ++ WW +G G P +Y+
Sbjct: 33 DPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 74
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 49.6 bits (119), Expect = 2e-08
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEP 418
++ EL +++ +++L + WW TG P NYVE
Sbjct: 20 QEQELDIKKNERLWLLDDSKS-WWRVRNSMNKTGFVPSNYVER 61
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 48.8 bits (117), Expect = 4e-08
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
ELS + V+ +L WW+ G +G P N ++
Sbjct: 14 NSSELSVMKDDVLEILDDRRQ-WWKVRNASGDSGFVPNNILDI 55
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 50.5 bits (120), Expect = 4e-08
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 8/110 (7%)
Query: 315 SQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPKN 374
S + ++Q + PP+P P++ + + G D
Sbjct: 6 SGRLLDLENIQIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAI 65
Query: 375 Y----IEKDELSFQESAVIYVLKKNDDGWWEGVM---DGITGLFPGNYVE 417
Y +LS Q V+ + + W+ G + + G+FP +++
Sbjct: 66 YNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIH 114
Score = 28.9 bits (64), Expect = 1.3
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 279 SANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPT 338
S + G + N + + P P P + + S S
Sbjct: 3 SGSSGRLLDLENIQIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHG 62
Query: 339 SA-----GQMDDHVNFGQPQAVRN--------GGIVPRDQDLPGWVPKNYIEKDELS 382
A G ++ VR G + + + L G PK++I E++
Sbjct: 63 VAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEVT 119
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 49.0 bits (117), Expect = 5e-08
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVEP 418
+ F+ + V+ WW+ + G PG V
Sbjct: 30 DISPPIFRRGEKLRVISDEGG-WWKAISLSTGRESYIPGICVAR 72
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 47.9 bits (114), Expect = 2e-07
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 30/107 (28%)
Query: 316 QQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHV----NFGQPQAVRNGGIVPRDQDLPGWV 371
++ PPP +S + V ++ Q
Sbjct: 3 KERPPPVPNPDYNSLKKGSLVKNLHMTEEVIVIAKWDY-TAQ------------------ 43
Query: 372 PKNYIEKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVE 417
+ EL +++ +++L + WW TG P NYVE
Sbjct: 44 -----QDQELDIKKNERLWLLDDSKT-WWRVRNAANRTGYVPSNYVE 84
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Length = 526
Score = 52.2 bits (124), Expect = 2e-07
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 372 PKNYIEKDELSFQESAVIYVLKKNDDGWWEGV--MDGITGLFPGNYVEP 418
DE+ + +I V + DG+ +GV G TGL+P V
Sbjct: 450 AHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 46.6 bits (111), Expect = 2e-07
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 21/61 (34%)
Query: 366 DLPGWVPKNYIEK---------------------DELSFQESAVIYVLKKNDDGWWEGVM 404
D G+VP Y++K E++ ++ ++ +L + WW+ +
Sbjct: 2 DRQGFVPAAYVKKLDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61
Query: 405 D 405
+
Sbjct: 62 N 62
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 50.7 bits (121), Expect = 5e-07
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
+ EL F+ VI V+ + WW G + G FP ++V V
Sbjct: 43 DDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRV 86
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3
domain, protein binding; 2.01A {Homo sapiens} PDB:
2kt1_A
Length = 90
Score = 46.1 bits (109), Expect = 6e-07
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 17/56 (30%)
Query: 379 DELSFQESAVIYVLKK---------------NDDGWWEGV--MDGITGLFPGNYVE 417
++L V+ V + GW G+ G FPG YVE
Sbjct: 26 EDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVE 81
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 50.6 bits (121), Expect = 6e-07
Identities = 25/129 (19%), Positives = 42/129 (32%), Gaps = 6/129 (4%)
Query: 295 NNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQA 354
P + + A SQ P P S P + ++ N
Sbjct: 14 RRSLEPAENVHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFN-SSDTV 72
Query: 355 VRNGGIVPRDQDLPGWVPK-NY--IEKDELSFQESAVIYVLKKNDDGWW--EGVMDGITG 409
P + +V +Y + +LSF++ + ++ + WW + G TG
Sbjct: 73 TSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTG 132
Query: 410 LFPGNYVEP 418
P NYV P
Sbjct: 133 YIPSNYVAP 141
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 45.8 bits (108), Expect = 6e-07
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 365 QDLPGWVPKNYIEKDELSFQESAVIYVLKKN-DDGWWEG--VMDGITGLFPGNYVEPCV 420
Q+ G P L ++ + K + WWEG G FP N V P V
Sbjct: 19 QEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 77
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 44.6 bits (105), Expect = 2e-06
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 365 QDLPGWVPKNYIEKDELSFQESAVIYVLKKN-DDGWWEG--VMDGITGLFPGNYVEPCV 420
Q+ G P L ++ + K + WWEG G FP N V P V
Sbjct: 11 QEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 69
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 45.0 bits (106), Expect = 2e-06
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 11/52 (21%)
Query: 377 EKDELSFQESAVIYVLKK---NDDGWWEGVMDG--------ITGLFPGNYVE 417
+ L+ V+YV K +W G + G G FP + V
Sbjct: 35 DCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVR 86
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 47.8 bits (114), Expect = 4e-06
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 319 PPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGWVPKNYIEK 378
P ++Q+ +S P + A + + N + + + D
Sbjct: 4 DPSEALQRPVASDFEPQGLSEAARWNSKENLLAGPSENDPNLFVALYDFVA------SGD 57
Query: 379 DELSFQESAVIYVLKKNDDGWW-EGVMDGITGLFPGNYVEP 418
+ LS + + VL N +G W E G P NY+ P
Sbjct: 58 NTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 98
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 46.3 bits (110), Expect = 7e-06
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 379 DELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
DEL+F + +I VL K D WW+G + G GLFP NYV+
Sbjct: 17 DELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTT 58
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 41.2 bits (96), Expect = 2e-04
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM---DGITGLFPGNYVEPC 419
+LS Q V+ + + W+ G + + G+FP +++
Sbjct: 30 GAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIK 74
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain,
peptide complex, alternative splicing, disease mutation,
HOST-virus interaction, phosphoprotein, polymorphism;
1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A
1pks_A 1pkt_A
Length = 83
Score = 38.9 bits (90), Expect = 2e-04
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 17/57 (29%)
Query: 379 DELSFQESAVIYVLKK---------------NDDGWWEGVMD--GITGLFPGNYVEP 418
+++ ++ V K + GW G + G G FPG YVE
Sbjct: 20 EDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEY 76
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 37.7 bits (87), Expect = 8e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 377 EKDELSFQESAVIYVLKKNDD----GWWEGVMDGITGLFPGNYVEP 418
+ ++S E ++ V+KK D W G ++++P
Sbjct: 30 QDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKP 75
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 40.1 bits (94), Expect = 0.001
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWW--EGVMDGITGLFPGNYVEP 418
+ +LSF++ + ++ + WW + G TG P NYV P
Sbjct: 15 TETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 39.6 bits (93), Expect = 0.001
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV--MDGITGLFPGNYVEP 418
+ +L F + V+ ++ D W G G+ P NYV+
Sbjct: 24 AEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 67
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus} PDB: 3lvh_A
Length = 624
Score = 36.9 bits (85), Expect = 0.012
Identities = 7/55 (12%), Positives = 14/55 (25%)
Query: 259 AQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGM 313
+++Q Q Q+M + + P P + M
Sbjct: 570 KEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAYGQPQPGFGYSM 624
Score = 31.5 bits (71), Expect = 0.51
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 258 LAQQQQQQAQLAHHLQQQQMMSANMGNNPQM-GNSHMANNPQPPNAHPPPSQYQAGM-MS 315
+ + + +L ++ P + G + P A PP + + G
Sbjct: 552 MKEYLTKVDKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAP 611
Query: 316 QQPPPPPSM 324
P P
Sbjct: 612 AYGQPQPGF 620
Score = 31.5 bits (71), Expect = 0.59
Identities = 12/71 (16%), Positives = 17/71 (23%)
Query: 273 QQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPP 332
+ + + A QP P AG PP P ++
Sbjct: 554 EYLTKVDKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPAY 613
Query: 333 LPPPPTSAGQM 343
P P M
Sbjct: 614 GQPQPGFGYSM 624
Score = 30.3 bits (68), Expect = 1.4
Identities = 8/72 (11%), Positives = 17/72 (23%)
Query: 270 HHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSS 329
+++ + + + P + P S PP +
Sbjct: 550 QVMKEYLTKVDKLDASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYT 609
Query: 330 SPPLPPPPTSAG 341
+P P G
Sbjct: 610 APAYGQPQPGFG 621
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 36.4 bits (84), Expect = 0.014
Identities = 20/86 (23%), Positives = 28/86 (32%)
Query: 261 QQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPP 320
+ A A Q ++MM+ Q PP +PP G Q PP
Sbjct: 358 ESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPP 417
Query: 321 PPSMQQRSSSPPLPPPPTSAGQMDDH 346
+PP PP + Q D+
Sbjct: 418 QGYPPPPQGAPPQGAPPAAPPQGVDN 443
Score = 33.4 bits (76), Expect = 0.16
Identities = 16/96 (16%), Positives = 23/96 (23%)
Query: 262 QQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPP 321
+ + ++ SA+ +M Q P Q PP
Sbjct: 348 KDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPP 407
Query: 322 PSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRN 357
+ P PPP PQ V N
Sbjct: 408 QGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDN 443
Score = 31.4 bits (71), Expect = 0.52
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 139 GVRNAPRNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQ 198
+K+ + +P + P + + + ++ + A PPQ
Sbjct: 334 LTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAA--QMKEMMAMMQKMQQQQAAYPPQ 391
Query: 199 VPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPH--PQQQDPRSH 252
P +G P G P PP+ PP PQ D +++
Sbjct: 392 -GYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVDNQAY 446
Score = 28.4 bits (63), Expect = 5.2
Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 2/97 (2%)
Query: 156 ICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRE 215
+ T+ G ++ + +P +
Sbjct: 333 VLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQG 392
Query: 216 RGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSH 252
P P G P PP+ PP P+
Sbjct: 393 YAPPPQGYPPQGY--PPQGYPPQGYPPQGYPPPPQGA 427
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 36.1 bits (83), Expect = 0.019
Identities = 21/177 (11%), Positives = 46/177 (25%), Gaps = 9/177 (5%)
Query: 181 TLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENM 240
T+ ++ + A + +R G G P +
Sbjct: 291 TILKYQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQSGVDEGRTSGWSSMDRRRAPPPI 350
Query: 241 PPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPP 300
++ G + ++ + + + G++ + S + P
Sbjct: 351 ASVGTLAKQKAPVGNDASFSKEPVISA-------SNFLGRSSGSSRRPAVSS--SRDVMP 401
Query: 301 NAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRN 357
PS+ +A S S Q+SS P S+ A++
Sbjct: 402 IDTSEPSRTRATDASPGAFRRTSGPQKSSPVNSAEPKHSSSARHSSNVKNYESALKG 458
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 35.8 bits (83), Expect = 0.021
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 376 IEKDELSFQESAVIYVLKKNDDGWWE--GVMDGITGLFPGNYVEP 418
I ++LSFQ+ + VL++ WW+ + G P NYV
Sbjct: 20 IHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVAR 63
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 33.5 bits (76), Expect = 0.022
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKK--NDDGWWEG-VMDGITGLFPGNYVE 417
K+ELSF++ I +++ N +G W G G G VE
Sbjct: 40 GKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVE 83
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Length = 282
Score = 35.2 bits (80), Expect = 0.032
Identities = 18/114 (15%), Positives = 33/114 (28%)
Query: 238 ENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNP 297
+ +++ + + ++ Q + Q M Q
Sbjct: 100 TFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159
Query: 298 QPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQ 351
QPP PP G+ Q PP Q+ +PP + +H+ F
Sbjct: 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLT 213
Score = 28.7 bits (63), Expect = 3.9
Identities = 18/119 (15%), Positives = 29/119 (24%)
Query: 138 HGVRNAPRNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPP 197
+ P K+ VV P P R + Y PP + PP
Sbjct: 113 PKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPP 172
Query: 198 QVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQF 256
+ P++ + P N+P + + QF
Sbjct: 173 PGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF 231
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 35.5 bits (81), Expect = 0.037
Identities = 36/199 (18%), Positives = 55/199 (27%), Gaps = 7/199 (3%)
Query: 143 APRNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSH 202
+P +P+ S P +P+ P +P S S Y +P + +
Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPS 1597
Query: 203 YAPNYPIGHPKRERGPGYG-TLPQVGMVHPLPPPPPENMPPHPQQQDPRS-HYGQFSLAQ 260
Y+P P P P Y T P P P + P P S Y S +
Sbjct: 1598 YSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1654
Query: 261 QQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPP 320
A + +P + + +P PN P Y P
Sbjct: 1655 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYS-PTSPGYSPG 1713
Query: 321 PPSMQQRSSSPPLPPPPTS 339
P+ + S
Sbjct: 1714 SPAYSPKQDEQKHNENENS 1732
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.062
Identities = 47/281 (16%), Positives = 76/281 (27%), Gaps = 97/281 (34%)
Query: 3 ELASLLTTEIPEGRTSLLDSHS----NLEKVAEYCEGNYFQADNKRMALEET-----KNY 53
EL L T L+ + L + E + Q N LE K+Y
Sbjct: 172 ELRDLYQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 54 TTQSLASVAY-----QINTLA--YNFLQLLDLQTAQLEEMESQMNHIGQIGVLTANKTTN 106
L S+ + LA +LL +L Q G++TA
Sbjct: 231 ----LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-GLVTA----- 280
Query: 107 RQYKIIAPA--------NPEKPIKYV------------RKPIDLNALDD---IGHG---- 139
IA + K I + + + L+D G
Sbjct: 281 ---VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 140 ---VRNAPRNK---------QRTPSQSNI----------CVVPGPPAPTTKPPTPPSVIR 177
+ N + + P+ + VV GPP S+
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ---------SLYG 388
Query: 178 STGTLKNSREYRTPPAVAPPQVP-SHYAPNY-----PIGHP 212
TL R+ + P + ++P S + P+ P
Sbjct: 389 LNLTL---RKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Score = 28.5 bits (63), Expect = 6.2
Identities = 27/155 (17%), Positives = 43/155 (27%), Gaps = 42/155 (27%)
Query: 299 PPNAHPPPSQYQAGMMSQQPPPPPSMQQR---SSSPPL----------PPPPTSAGQMDD 345
P + SQ Q P P ++ L P+ GQ D
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 346 -----HVNFGQPQAVRNGGI------VPRDQDLP----GWVPKNYIEKDELSFQESAVIY 390
F + I + ++ D + KNYI ++ +
Sbjct: 83 VLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD--- 138
Query: 391 VLKKNDDGWWEGVMDGITGLFP-----GN---YVE 417
KK++ + V +G L GN Y E
Sbjct: 139 --KKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring
E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A
{Saccharomyces cerevisiae}
Length = 371
Score = 34.5 bits (78), Expect = 0.065
Identities = 14/63 (22%), Positives = 23/63 (36%)
Query: 291 SHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFG 350
+ ++ PP Q Q+ + +Q P +SS PPPT+ +F
Sbjct: 3 TPLSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFA 62
Query: 351 QPQ 353
P
Sbjct: 63 VPT 65
Score = 32.2 bits (72), Expect = 0.33
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 278 MSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPP 337
+SA + + + +P P + + S PPP+ SSS P
Sbjct: 5 LSAITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVP 64
Query: 338 T 338
T
Sbjct: 65 T 65
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure,
protein turnover, protein transport; HET: EPE; 2.50A
{Kluyveromyces marxianus}
Length = 274
Score = 33.9 bits (77), Expect = 0.087
Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 28/145 (19%)
Query: 206 NYPIG----------HPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQ 255
YP G + + P +P + ++
Sbjct: 86 EYPCGVLFDLLNKKRKKQGNELDDTSLQMWELQLCHGDKYPRGILPLVDGHSQIKDYW-- 143
Query: 256 FSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANN------------PQPPNAH 303
+ Q +QA + +++MS ++ + S ++ N
Sbjct: 144 ----RHQWKQACFILNGSAKRIMSLSIPDFENFWVSILSRNRSDFMAVRSKLFSMNKAKS 199
Query: 304 PPPSQYQAGMMSQQPPPPPSMQQRS 328
P + + QP P + ++ S
Sbjct: 200 LPVRVWTSNYAVLQPTVPVTDKELS 224
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 33.8 bits (77), Expect = 0.10
Identities = 21/156 (13%), Positives = 37/156 (23%), Gaps = 3/156 (1%)
Query: 162 PPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIG-HPKRERGPGY 220
P + S ++N + +P P P P +
Sbjct: 5 EAMSQVIQAMPSDLTIS-SAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPH 63
Query: 221 GTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSA 280
G+L P ++ P P P S G + Q HL +++
Sbjct: 64 GSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHL-ILELLKC 122
Query: 281 NMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQ 316
+ N G+M +
Sbjct: 123 EPDEPQVQAKIMAYLQQEQANRSKHEKLSTFGLMCK 158
Score = 30.3 bits (68), Expect = 1.2
Identities = 14/145 (9%), Positives = 32/145 (22%), Gaps = 5/145 (3%)
Query: 195 APPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYG 254
A QV + I + LP + PP +
Sbjct: 6 AMSQVIQAMPSDLTISSAIQNIHSASKGLPL----NHAALPPTDYDRSPFVTSPISMTMP 61
Query: 255 QFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMM 314
Q Q + + ++P+ + + ++ ++
Sbjct: 62 PHGSLQGYQTYGHFPSRAIKSE-YPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELL 120
Query: 315 SQQPPPPPSMQQRSSSPPLPPPPTS 339
+P P + + S
Sbjct: 121 KCEPDEPQVQAKIMAYLQQEQANRS 145
Score = 29.2 bits (65), Expect = 2.7
Identities = 12/77 (15%), Positives = 24/77 (31%)
Query: 266 AQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQ 325
+Q+ + +S+ + N N+ P S + +S PP S+Q
Sbjct: 8 SQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQ 67
Query: 326 QRSSSPPLPPPPTSAGQ 342
+ P +
Sbjct: 68 GYQTYGHFPSRAIKSEY 84
Score = 28.8 bits (64), Expect = 3.8
Identities = 13/113 (11%), Positives = 22/113 (19%), Gaps = 4/113 (3%)
Query: 228 MVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQ 287
++ +P + A + M +
Sbjct: 10 VIQAMPSDLTISSAIQNIHS-ASKGLPLNHAALPPTDYDRSPFVTSPISMTMP--PHGSL 66
Query: 288 MGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSA 340
G + P P Y + S Q +SSP P
Sbjct: 67 QGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQ-TSSPASIPHLILE 118
Score = 27.7 bits (61), Expect = 7.3
Identities = 14/114 (12%), Positives = 22/114 (19%), Gaps = 5/114 (4%)
Query: 228 MVHPLPPPPPENMPPHPQQQDP--RSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANM--- 282
+ + MP H L + +M
Sbjct: 2 LKLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMP 61
Query: 283 GNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPP 336
+ G + P P Y + S Q SS +P
Sbjct: 62 PHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHL 115
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair,
proteasome-mediated degradation, protein- protein
interaction, replication; NMR {Homo sapiens} SCOP:
a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Length = 368
Score = 33.4 bits (75), Expect = 0.12
Identities = 15/184 (8%), Positives = 37/184 (20%), Gaps = 1/184 (0%)
Query: 169 PPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGM 228
T + T + P + ++P + ++ P + P
Sbjct: 80 MVTKTKAGQGTSAPPEASPTAAPESSTSFPPAPTSGMSHPPPAAREDKSPSEESAPTTSP 139
Query: 229 VHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQM 288
P + G + + + + A+ NNP
Sbjct: 140 ESVSGSVPSSGSSGREEDAASTLVTGSEYETMLTEIMSMGYERERVVAALRASY-NNPHR 198
Query: 289 GNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVN 348
++ S ++ + Q P + +
Sbjct: 199 AVEYLLTGIPGSPEPEHGSVQESQVSEQPATEAAGENPLEFLRDQPQFQNMRQVIQQNPA 258
Query: 349 FGQP 352
Sbjct: 259 LLPA 262
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 33.6 bits (76), Expect = 0.12
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 3/107 (2%)
Query: 149 RTPSQSNICVVPGPPAPTTKPPTP---PSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAP 205
+ + P P+ + L P PP + P
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 206 NYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSH 252
+ G +R T P + P + P P P +
Sbjct: 63 DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109
Score = 30.9 bits (69), Expect = 0.75
Identities = 21/116 (18%), Positives = 23/116 (19%), Gaps = 10/116 (8%)
Query: 144 PRNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHY 203
+ PS S A P T P P V V
Sbjct: 17 RGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA--PAAGNPPDTVTGDSVLQRI 74
Query: 204 APNYPIGHPKRERGPGYGTLPQVGMVHPLPPP-------PPENMPPHPQQQDPRSH 252
P G P Q G P P P P P+ R
Sbjct: 75 LRG-PTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
Score = 29.0 bits (64), Expect = 3.0
Identities = 6/47 (12%), Positives = 12/47 (25%)
Query: 298 QPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMD 344
++ P + S S + PP+ P +
Sbjct: 8 HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPP 54
Score = 27.8 bits (61), Expect = 6.7
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 282 MGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAG 341
MG++ + P+ + P + + P + +PP PP P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGN 60
Score = 27.4 bits (60), Expect = 9.4
Identities = 11/123 (8%), Positives = 20/123 (16%), Gaps = 4/123 (3%)
Query: 230 HPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMG 289
H P + P + + A
Sbjct: 10 HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDS 69
Query: 290 NSHMA----NNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDD 345
P + P + PP+ + P P +
Sbjct: 70 VLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129
Query: 346 HVN 348
V+
Sbjct: 130 EVS 132
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 33.3 bits (75), Expect = 0.15
Identities = 13/60 (21%), Positives = 18/60 (30%)
Query: 282 MGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAG 341
M N P + + PP S + S +SP P P +S G
Sbjct: 15 MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74
Score = 32.1 bits (72), Expect = 0.31
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 290 NSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNF 349
N +M + +P PPPS G + S ++ S++ P+ P + F
Sbjct: 20 NGYMTDLQRPQPPPPPPSAASPG--ATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF 77
Query: 350 GQP--QAVRNGGIVPRDQDLPGW 370
AV+
Sbjct: 78 FSSLSNAVKQTTAAAAATFSEQV 100
Score = 32.1 bits (72), Expect = 0.31
Identities = 15/63 (23%), Positives = 20/63 (31%)
Query: 279 SANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPT 338
+N N G PQPP P + A S + + P P P
Sbjct: 11 DSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG 70
Query: 339 SAG 341
S+G
Sbjct: 71 SSG 73
Score = 29.4 bits (65), Expect = 2.6
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 306 PSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQ 342
P+ Y + QPPPPP + P ++
Sbjct: 19 PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERA 55
Score = 28.7 bits (63), Expect = 3.8
Identities = 7/52 (13%), Positives = 13/52 (25%)
Query: 291 SHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQ 342
+++ N P P S P + + P + A
Sbjct: 16 ANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAP 67
Score = 27.5 bits (60), Expect = 9.3
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 4/61 (6%)
Query: 300 PNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGG 359
PN + Q PPPP + ++ A + P +GG
Sbjct: 19 PNGYMTDLQRP----QPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74
Query: 360 I 360
Sbjct: 75 G 75
>1mv3_A MYC box dependent interacting protein 1; tumor suppressor,
endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 213
Score = 32.4 bits (72), Expect = 0.18
Identities = 34/244 (13%), Positives = 60/244 (24%), Gaps = 49/244 (20%)
Query: 190 TPPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDP 249
PA P +H P + Q+ P+PPPP +Q+
Sbjct: 2 GSPAATPEIRVNHEPEPAGGATPGATLPK---SPSQLRKGPPVPPPPKHTPSKEVKQEQI 58
Query: 250 RSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQY 309
S + + + + P P +
Sbjct: 59 LSLFEDTFVPEISVTTPSQPAEASEVA----------------GGTQPAAGAQEPGETAA 102
Query: 310 QAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPG 369
S P + + + + + QA
Sbjct: 103 SEAASSSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQH------------- 149
Query: 370 WVPKNYIEKDELSFQESAVIYVLK-----KNDDGWWEGV----------MDGITGLFPGN 414
+ DEL + V+ V+ + D+GW GV ++ G+FP N
Sbjct: 150 --DYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPEN 207
Query: 415 YVEP 418
+ E
Sbjct: 208 FTER 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 32.2 bits (74), Expect = 0.29
Identities = 11/81 (13%), Positives = 20/81 (24%), Gaps = 7/81 (8%)
Query: 268 LAHHLQQQQMMS--ANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGM---MSQQPPPPP 322
L + + QM+ + + G+ M+ N Q M +
Sbjct: 421 LTQYTKFAQMVKKMGGIKGLFKGGD--MSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMA 478
Query: 323 SMQQRSSSPPLPPPPTSAGQM 343
+Q G M
Sbjct: 479 GLQSMMRQFQQGAAGNMKGMM 499
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 32.1 bits (72), Expect = 0.30
Identities = 24/118 (20%), Positives = 28/118 (23%), Gaps = 4/118 (3%)
Query: 231 PLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGN 290
P P P P +Q P LA Q QQ L Q
Sbjct: 13 PFPAPTAMWRPRRRRQAAPMPARNG--LASQIQQLTTAVSALVIGQATRPQNPRPRPPPR 70
Query: 291 SHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVN 348
QPP P + Q Q P +QR + D V
Sbjct: 71 QKKQAPKQPPK--PKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVI 126
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 32.1 bits (72), Expect = 0.36
Identities = 28/207 (13%), Positives = 50/207 (24%), Gaps = 5/207 (2%)
Query: 132 ALDDIGHGVRNAPRNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTP 191
L+ + R+ Q P + P + +
Sbjct: 187 QLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLE 246
Query: 192 PAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRS 251
P R PG +G V+P P + +P + +P S
Sbjct: 247 TFGGDGHARGDSVSQGTGLAPGSPRKPGT---SSIGNVNPGSYGPGSSGTWNPGRPEPGS 303
Query: 252 HYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQA 311
G ++ + + A + + + + S NP P +
Sbjct: 304 A-GTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP-EPGSAGTWNT 361
Query: 312 GMMSQQPPPPPSMQQRSSSPPLPPPPT 338
G P S + P P T
Sbjct: 362 GSSGSSSFRPDSSGHGNIRPSSPDWGT 388
Score = 31.4 bits (70), Expect = 0.62
Identities = 17/108 (15%), Positives = 28/108 (25%)
Query: 235 PPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMA 294
+P + Q + +L + QQ + L ++ +
Sbjct: 212 TITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPR 271
Query: 295 NNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQ 342
+ P Y G P P + P P P SAG
Sbjct: 272 KPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGT 319
Score = 30.6 bits (68), Expect = 0.94
Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 4/167 (2%)
Query: 83 LEEMESQMNHIGQIGVLTANKTTNRQYKIIAPANPEKPIKYVRKPIDLNALDDIGHGVRN 142
LE+ ++Q + Q+ + + + QY I + P + +
Sbjct: 178 LEDYKNQQKQLEQVIAINLLPSRDIQYLPILKMSTITGPV----PREFKSQLQEAPLEWK 233
Query: 143 APRNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSH 202
A Q+T G + S S P P
Sbjct: 234 ALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGT 293
Query: 203 YAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDP 249
+ P P PG G +P P P +P + +P
Sbjct: 294 WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEP 340
Score = 28.3 bits (62), Expect = 4.6
Identities = 21/178 (11%), Positives = 34/178 (19%), Gaps = 4/178 (2%)
Query: 167 TKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQV 226
K I + + VP + + + Q
Sbjct: 185 QKQLEQVIAINLLPSRDIQYLPILKMSTITGPVPREFKSQLQEAPLEW---KALLEMQQT 241
Query: 227 GMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNP 286
MV Q + + P
Sbjct: 242 KMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEP 301
Query: 287 QMGNSHMANNPQPPN-AHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQM 343
+ P+P + P + + G P P + P P P SAG
Sbjct: 302 GSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTW 359
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 31.1 bits (70), Expect = 0.36
Identities = 13/74 (17%), Positives = 24/74 (32%)
Query: 292 HMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQ 351
HM P P + +S++ P PS + S+ P+ T + + D N
Sbjct: 2 HMDEEDGEPPYEPESGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDV 61
Query: 352 PQAVRNGGIVPRDQ 365
+ +
Sbjct: 62 DPMAASAEYELEKR 75
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 31.2 bits (70), Expect = 0.49
Identities = 17/74 (22%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 273 QQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPP---PPPSMQQRSS 329
Q Q G PP + Q G + P P +
Sbjct: 150 QFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPA 209
Query: 330 SPPLPPPPTSAGQM 343
P PPPP AGQ
Sbjct: 210 GPGGPPPPFPAGQT 223
Score = 27.4 bits (60), Expect = 7.6
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 172 PPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKR---ERGPGYGTLPQVGM 228
P V + E ++ Q+ P G + + G G G P
Sbjct: 141 NPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVP 200
Query: 229 VHPLPPPPPENM---PPHPQQQDPRSHY 253
P P PP P Q H+
Sbjct: 201 GGDRFPGPAGPGGPPPPFPAGQTHHHHH 228
>1eqq_A Single stranded DNA binding protein; beta barrel, protein-DNA
complex, replication/RNA complex; HET: 5MU; 3.20A
{Escherichia coli} SCOP: b.40.4.3
Length = 178
Score = 30.6 bits (69), Expect = 0.56
Identities = 12/71 (16%), Positives = 15/71 (21%), Gaps = 5/71 (7%)
Query: 280 ANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTS 339
N+G QM QQP + S P P +
Sbjct: 104 VNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAA 163
Query: 340 AGQ-----MDD 345
DD
Sbjct: 164 PSNEPPMDFDD 174
>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A
{Saccharomyces cerevisiae}
Length = 350
Score = 31.1 bits (69), Expect = 0.70
Identities = 7/46 (15%), Positives = 10/46 (21%)
Query: 294 ANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTS 339
A + P Q P Q ++ P S
Sbjct: 3 AKAQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYS 48
Score = 29.6 bits (65), Expect = 2.0
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 297 PQPPNAHPPPS----QYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTS 339
Q N + P+ + PPP + + + P +
Sbjct: 5 AQLSNGYNNPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCT 51
Score = 28.8 bits (63), Expect = 3.5
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 8/57 (14%)
Query: 286 PQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQ 342
Q+ N + N N + PP PPP Q + G+
Sbjct: 5 AQLSNGYNNPNVNASNMYGPPQNM--------SLPPPQTQTIQGTDQPYQYSQCTGR 53
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB:
1pd0_A 1pd1_A
Length = 810
Score = 31.1 bits (69), Expect = 0.83
Identities = 13/59 (22%), Positives = 15/59 (25%), Gaps = 8/59 (13%)
Query: 298 QPPNAHPPPSQYQAGMMSQQP--------PPPPSMQQRSSSPPLPPPPTSAGQMDDHVN 348
P P + Q Q PPP PPL PP + N
Sbjct: 2 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 60
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 30.9 bits (68), Expect = 0.85
Identities = 22/177 (12%), Positives = 41/177 (23%), Gaps = 8/177 (4%)
Query: 145 RNKQRTPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYA 204
R C P P P + P + + PP
Sbjct: 15 PGPPRIAPPKLACRTPSPARPALRAPASAT--SGSRKRARPPAAPGRDQARPPARRRLRL 72
Query: 205 PNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQ 264
+ P P P G P P QD + ++
Sbjct: 73 SVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTI------SELASC 126
Query: 265 QAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPP 321
+ + + + A+ + + P+ P P+ + ++Q P
Sbjct: 127 LQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPG 183
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 30.5 bits (69), Expect = 1.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 374 NYIEKDELSFQESAVIYVLKKNDDGWWE 401
LSF+ V++V+ D+ WW+
Sbjct: 16 CGFLSQALSFRFGDVLHVIDAGDEEWWQ 43
>3eiv_A Single-stranded DNA-binding protein 2; DNA damage, DNA repair, DNA
replication, phosphoprotein; 2.14A {Streptomyces
coelicolor}
Length = 199
Score = 29.9 bits (67), Expect = 1.0
Identities = 7/73 (9%), Positives = 8/73 (10%)
Query: 273 QQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPP 332
Q + G G P P
Sbjct: 123 QGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGAPADDPWATGGAPAGGQQGGGGQGGGG 182
Query: 333 LPPPPTSAGQMDD 345
G D
Sbjct: 183 WGGGSGGGGGYSD 195
Score = 27.9 bits (62), Expect = 5.4
Identities = 11/80 (13%), Positives = 12/80 (15%)
Query: 304 PPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPR 363
P A D G P + GG
Sbjct: 120 TSGQGRGGQGGYGGGGGGQGGGGWGGGPGGGQQGGGAPADDPWATGGAPAGGQQGGGGQG 179
Query: 364 DQDLPGWVPKNYIEKDELSF 383
G DE F
Sbjct: 180 GGGWGGGSGGGGGYSDEPPF 199
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 30.5 bits (69), Expect = 1.0
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 381 LSFQESAVIYVLKKNDDGWWEG 402
L F+ +++V +DD WW+
Sbjct: 27 LPFKHGDILHVTNASDDEWWQA 48
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo
sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Length = 341
Score = 30.3 bits (68), Expect = 1.0
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 18/124 (14%)
Query: 17 TSLLDSHSNLEKVAEYCEGNYFQADNKRMALEETKNYTT--QSLASVAYQINTLAYNFLQ 74
LL H L AE+ E +Y + ++ L ++NY T QSL + ++ +NF
Sbjct: 189 KDLLTRHKLL--SAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG-ELLLDRHNF-T 244
Query: 75 LLDLQTAQLEEMESQMNHI------------GQIGVLTANKTTNRQYKIIAPANPEKPIK 122
++ ++ E ++ MN + V AN + I N K I+
Sbjct: 245 IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIE 304
Query: 123 YVRK 126
++ K
Sbjct: 305 FLSK 308
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 29.9 bits (68), Expect = 1.1
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 379 DELSFQESAVIYVLKKNDDG---WWEGVMDGITGLFPGNYVE 417
DEL +E + ++ + D+ WW ++ G P N +
Sbjct: 185 DELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG,
structural genomics, PSI-2, protein initiative; 1.90A
{Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Length = 115
Score = 29.0 bits (65), Expect = 1.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 258 LAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSH 292
LA ++ ++ HLQQ + ++ +MG +P +G H
Sbjct: 76 LAPARKDSVKVKLHLQQARRIAGSMGRDPLVGLEH 110
>2ocf_A Estrogen receptor; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 298
Score = 30.2 bits (68), Expect = 1.3
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 19/107 (17%)
Query: 252 HYGQFSLAQQQQQQAQLAH------HLQQ------QQMMSANMGNNPQMGN-------SH 292
H + QQQ +LA H++ + + S N + + +H
Sbjct: 191 HLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLSDLLLEMLDAH 250
Query: 293 MANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTS 339
+ P Q+ + + S+Q+ + P +
Sbjct: 251 RLHAPTSRGGASVEETDQSHLATAGSTSSHSLQKYYITGEAEGFPAT 297
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 29.6 bits (66), Expect = 1.4
Identities = 31/169 (18%), Positives = 36/169 (21%), Gaps = 27/169 (15%)
Query: 157 CVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRER 216
V GPP T P + G R PA P P P G R
Sbjct: 80 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM-------PQAPAGLAGPVR 132
Query: 217 GPGYGTLPQVGMVHPLPPPPPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQ 276
G G G QV + Y +
Sbjct: 133 GVG-GPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPG------------------RG 173
Query: 277 MMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQ 325
MG P PP G + PPP M+
Sbjct: 174 GPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPP-GRGTPMGMPPPGMR 221
Score = 28.5 bits (63), Expect = 3.3
Identities = 15/91 (16%), Positives = 17/91 (18%)
Query: 282 MGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAG 341
G A + Q PP PPP
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGP 191
Query: 342 QMDDHVNFGQPQAVRNGGIVPRDQDLPGWVP 372
G P + G P PG P
Sbjct: 192 PPGMRPPMGPPMGIPPGRGTPMGMPPPGMRP 222
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 30.3 bits (67), Expect = 1.5
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 14 EGRTSLLDSHSNLEKVAEYC-EGNYFQADNKRMALEETKNYTTQSLASVAYQINTL--AY 70
+D LE + E F + +E + Q L ++A IN +
Sbjct: 655 VNYKPKIDQ---LEGDHQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQI 711
Query: 71 NFLQLLDLQTAQLEEMESQMNHI 93
+ Q+ E + NH
Sbjct: 712 LTRDAKGISQEQMNEFRASFNHF 734
>3rsw_A Fatty acid-binding protein, heart; lipid carrier, molecular
chaperone, heart fatty acid binding type 2 diabetes,
atherosclerosis, chaperone; 2.60A {Homo sapiens} PDB:
1g5w_A 1hmr_A* 1hms_A* 1hmt_A* 2hmb_A* 1bwy_A
Length = 158
Score = 29.3 bits (65), Expect = 1.7
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 288 MGNSHMANNPQPPNAHPPPSQYQAGMMSQ 316
MG+SH ++ Q M+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLQDLMVDA 29
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane
fusion, viral P glycoprotein B, HSV-1, membrane; HET:
NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A*
3nwd_A*
Length = 703
Score = 29.9 bits (67), Expect = 1.9
Identities = 11/84 (13%), Positives = 16/84 (19%)
Query: 160 PGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPG 219
PG A T P+ P P+ P+ P
Sbjct: 11 PGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAGHATL 70
Query: 220 YGTLPQVGMVHPLPPPPPENMPPH 243
L + + P
Sbjct: 71 REHLRDIKAENTDANFYVCPPPTG 94
Score = 28.4 bits (63), Expect = 5.0
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 9/108 (8%)
Query: 150 TPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPI 209
+P + P PP++ + ++ + P PP+ A
Sbjct: 7 SPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAAG 66
Query: 210 GHPKRERGPGYGTLPQVGMVHPLPPP---------PPENMPPHPQQQD 248
RE + PPP P P P+ Q+
Sbjct: 67 HATLREHLRDIKAENTDANFYVCPPPTGATVVQFEQPRRCPTRPEGQN 114
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A
{Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A*
3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A*
3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Length = 158
Score = 28.8 bits (64), Expect = 2.1
Identities = 13/89 (14%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 16 RTSLLDSHSNLEKVAEYCEGN----YFQADNKRMALEETKNYTTQSLASVAYQIN--TLA 69
R L+ NL+ + + G ++D LE + A ++
Sbjct: 61 RILFLEGLPNLQDLGKLNIGEDVEEMLRSDLA---LELDGAKNLREAIGYADSVHDYVSR 117
Query: 70 YNFLQLLDLQTAQLEEMESQMNHIGQIGV 98
+++L + ++ +E++++ I ++G+
Sbjct: 118 DMMIEILRDEEGHIDWLETELDLIQKMGL 146
>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein;
HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1
Length = 161
Score = 28.8 bits (64), Expect = 2.2
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 16 RTSLLDSHSNLEKVAEYCEGN----YFQADNKRMALEETKNYTTQSLASVAYQIN--TLA 69
R L+ H NL+K+ G + D E + ++
Sbjct: 61 RILFLEGHPNLQKLDPLRIGEGPRETLECDLA---GEHDALKLYREARDYCAEVGDIVSK 117
Query: 70 YNFLQLLDLQTAQLEEMESQMNHIGQIGV 98
F L+ + ++ +E+Q++ ++G
Sbjct: 118 NIFESLITDEEGHVDFLETQISLYDRLGP 146
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 28.9 bits (64), Expect = 2.3
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWW-EGVMDGITGLFPGNYVEPC 419
+L F++ + +L+++ + W + + G G P N+V
Sbjct: 25 HDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKA 68
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 29.4 bits (65), Expect = 2.4
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 292 HMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAG 341
H+ P P P+ AG + P S ++ P P +
Sbjct: 15 HIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMPLPAALPGALA 64
>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics,
seattle structural genomics center for infectious
disease; HET: HEM; 1.81A {Brucella melitensis biovar
ABORTUS2308}
Length = 182
Score = 28.9 bits (64), Expect = 2.5
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 16 RTSLLDSHSNLEKVAEYCEGN----YFQADNKRMALEETKNYTTQSLASVAYQIN--TLA 69
R L+ NL+ V+ G +AD + E + + + ++
Sbjct: 82 RIIFLEGFPNLQTVSPLRIGQNVKEVLEAD---LKGEYDARASYKESREICDKLGDYVSK 138
Query: 70 YNFLQLLDLQTAQLEEMESQMNHIGQIGV 98
F +LL + ++ +E+Q++ + +IG
Sbjct: 139 QLFDELLADEEGHIDFLETQLDLLAKIGG 167
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 28.8 bits (64), Expect = 2.7
Identities = 12/92 (13%), Positives = 24/92 (26%)
Query: 236 PPENMPPHPQQQDPRSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMAN 295
P + + P Y ++ + LQQ + P+
Sbjct: 5 PTQTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQK 64
Query: 296 NPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQR 327
P+ P + +Q+ P + R
Sbjct: 65 KPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMR 96
>16vp_A Protein (VP16, VMW65, ATIF); transcriptional regulatory protein;
2.10A {Human herpesvirus 1} SCOP: d.180.1.1
Length = 366
Score = 28.9 bits (64), Expect = 3.1
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 162 PPAPTTKPPT-PPSVIRSTGTL-KNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPG 219
P AP T PPT + R++G R + + + +
Sbjct: 269 PGAPLTTPPTLHGNQARASGYFMVLIRAKLDSYSSFTTSPSEAVMREHA--YSRAPTKNN 326
Query: 220 YGTLPQVGMVHPLPPPPPENMPPHPQ 245
YG+ + + P P E P+
Sbjct: 327 YGSTIEGLLDLPDDDAPEEAGLAAPR 352
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 29.2 bits (65), Expect = 3.1
Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 292 HMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQ 351
+ +P A P++ +A + P + P +A ++ D
Sbjct: 89 YYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIAD-EPVKA 147
Query: 352 PQAVR 356
+
Sbjct: 148 SLLLH 152
>2fgy_A Carboxysome shell polypeptide; beta class of carbonic anhydrase,
lyase; 2.20A {Halothiobacillus neapolitanus}
Length = 542
Score = 28.9 bits (64), Expect = 3.5
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 4/121 (3%)
Query: 165 PTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLP 224
PTT+ + S T + R P V+ P +P +R P TLP
Sbjct: 15 PTTENLYFQGAMGSMNTRNTRSKQRAPCGVSSSVKPRLDLIE-QAPNPVYDRHPACITLP 73
Query: 225 QVGMVHPLPPPPPENMPPHPQQQDPRSHYGQF--SLAQQQQQQAQLAHHLQQQQMMSANM 282
+ HPL N + ++ + + L L H + Q++ +++
Sbjct: 74 ERTCRHPL-TDLEANEQLGRCEDSVKNRFDRVIPFLQVVAGIPLGLDHVTRVQELAQSSL 132
Query: 283 G 283
G
Sbjct: 133 G 133
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL
biogenesis/degradation, cell cycle, P transferase; HET:
GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A*
2vg4_A
Length = 284
Score = 28.7 bits (65), Expect = 3.7
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 300 PNAHPPPSQYQAGM-MSQQPPPPPSMQQRSSSPPLPPPPTSAGQM 343
P P P Y S P P + P PP ++
Sbjct: 2 PQLPPAPDDYPTFPDTSTWPVVFPELPAAPYGGPCRPPQHTSKAA 46
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding
protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A
1jh4_A
Length = 144
Score = 27.9 bits (61), Expect = 3.7
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 273 QQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPP 332
+ + PQ + NPQ P Q + Q P + +S+PP
Sbjct: 4 GSAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPP 63
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 28.9 bits (64), Expect = 3.8
Identities = 18/122 (14%), Positives = 29/122 (23%), Gaps = 10/122 (8%)
Query: 188 YRTPPAVAPPQVPSHYAPNYPIGHPKRERGPGYGTLPQVGMVHPLPPPPPENMPPHPQQQ 247
+P PS + P PG P + L P PP
Sbjct: 24 LTSPTGRGSMAAPSLHPSLGPGIGS-----PGQLHSP----ISTLSSPINGMGPPFSVIS 74
Query: 248 DP-RSHYGQFSLAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPP 306
P H +S++ P +G + + P P+ +
Sbjct: 75 SPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMAS 134
Query: 307 SQ 308
Sbjct: 135 FT 136
Score = 28.1 bits (62), Expect = 6.2
Identities = 13/103 (12%), Positives = 24/103 (23%), Gaps = 9/103 (8%)
Query: 258 LAQQQQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQ--------PPNAHPPPSQY 309
+A + Q+ S ++ + G+ + P H P S
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNS-SLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTL 59
Query: 310 QAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQP 352
+ + PP P + G P
Sbjct: 60 SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSP 102
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 28.5 bits (64), Expect = 4.0
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 162 PPAPTTKPPTPPSVIRSTGTL---KNSREYRTPPAVAPPQVPSHYAPNYPIGHPKRERGP 218
+ T+ T P ++ S L S+ + P P + P+ + + G
Sbjct: 8 HLSSTSTSTTTPLLLLSKPFLSPSAKSQLSHSKPFNFPRTLKPISYYKPPMANILSKLGF 67
Query: 219 GYGTLPQVGMVHPLPPPPPENMPPHPQQQ 247
G + M +P P +++P QQ
Sbjct: 68 GTRSPDPSTMDPTIPQGPDDDLPAPGQQF 96
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 28.7 bits (62), Expect = 4.1
Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 5/108 (4%)
Query: 150 TPSQSNICVVPGPPAPTTKPPTPPSVIRSTGTLKNSREYRTPPAVAPPQVPSHYAPNYPI 209
S N V G + T P + G + ++ + P
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSD-MPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTK 448
Query: 210 GHPKRERGPGYGTLPQVGMVHPLPP----PPPENMPPHPQQQDPRSHY 253
P P T P PL P P E P P + + H+
Sbjct: 449 EKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHHHH 496
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 28.2 bits (63), Expect = 4.4
Identities = 9/54 (16%), Positives = 12/54 (22%), Gaps = 11/54 (20%)
Query: 298 QPPNAHPPPSQYQ------AGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDD 345
QPP A+ Q G PP + P +
Sbjct: 2 QPPVANFCLWNLQPIQGSWMGAACIYQMPPS-----VRNTWWFPLLNTIPLDQY 50
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin
signaling pathway, hydrolase, nucleus, receptor,
developmental protein; HET: GA3; 1.80A {Arabidopsis
thaliana} PDB: 2zsi_B*
Length = 110
Score = 27.1 bits (59), Expect = 4.5
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 266 AQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQ---YQAGMMSQQPPPPP 322
A +A L+Q ++M M N + S +A H P++ + M++ PP
Sbjct: 41 ADVAQKLEQLEVM---MSNVQEDDLSQLATE----TVHYNPAELYTWLDSMLTDLNPPSS 93
Query: 323 SMQQRSSSPP 332
+ + + P
Sbjct: 94 NAEYDLKAIP 103
>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding
protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP:
a.25.1.1 PDB: 2fl0_A* 1sof_A*
Length = 155
Score = 27.6 bits (61), Expect = 4.6
Identities = 14/89 (15%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 16 RTSLLDSHSNLEKVAEYCEGN----YFQADNKRMALEETKNYTTQSLASVAYQIN--TLA 69
R L+ NL+++ + G + D + LE+ ++ + +
Sbjct: 61 RILFLEGLPNLQELGKLLIGEHTKEMLECD---LKLEQAGLPDLKAAIAYCESVGDYASR 117
Query: 70 YNFLQLLDLQTAQLEEMESQMNHIGQIGV 98
+L+ + ++ +E+Q++ I +IG+
Sbjct: 118 ELLEDILESEEDHIDWLETQLDLIDKIGL 146
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA
synthesis, damage tolerance, DNA repair, replication;
HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Length = 124
Score = 27.4 bits (60), Expect = 5.1
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 314 MSQQPPPPPSMQQRSSSPPLPPPPTSAG 341
S+Q + PP P AG
Sbjct: 7 HHHHGSGLSSLQSDPAGCVRPPAPNLAG 34
>2e3j_A Epoxide hydrolase EPHB; epoxide hydrolase B, structural
mycobacterium tuberculosis structural proteomics
project, X hydrolase; 2.10A {Mycobacterium tuberculosis}
PDB: 2zjf_A*
Length = 356
Score = 28.0 bits (62), Expect = 6.1
Identities = 15/156 (9%), Positives = 34/156 (21%), Gaps = 11/156 (7%)
Query: 226 VGMVHPLPPPPPENMPPHPQQQDPRSHY-------GQFSLAQQQQQQAQLAHHLQQQ--Q 276
VG+ P +P P + S Y G+ Q + +++
Sbjct: 125 VGISVPFAGRGVIGLPGSPFGERRPSDYHLELAGPGRVWYQDYFAVQDGIITEIEEDLRG 184
Query: 277 MMSANM--GNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLP 334
+ + M + A + ++ P
Sbjct: 185 WLLGLTYTVSGEGMMAATKAAVDAGVDLESMDPIDVIRAGPLCMAEGARLKDAFVYPETM 244
Query: 335 PPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGW 370
P + +D + + + D
Sbjct: 245 PAWFTEADLDFYTGEFERSGFGGPLSFYHNIDNDWH 280
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 27.9 bits (62), Expect = 6.2
Identities = 9/74 (12%), Positives = 17/74 (22%), Gaps = 11/74 (14%)
Query: 288 MGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHV 347
MG+SH ++ P P++ + + P S
Sbjct: 1 MGSSHHHHHHSSGLVPRGS-----------PTVTPTVNRENKPTCYPKAEISRLSASQIR 49
Query: 348 NFGQPQAVRNGGIV 361
N +
Sbjct: 50 NLNPVFGGSGPALT 63
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural
genomics consort TBSGC, metal binding protein; HET: HEM;
2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Length = 174
Score = 27.3 bits (60), Expect = 7.2
Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 16 RTSLLDSHSNLEKVAEYCEGN----YFQADNKRMALEETKNYTTQSLASVAYQIN--TLA 69
R LLD N +++ G F+AD +E + + + T A
Sbjct: 63 RILLLDGLPNYQRIGSLRIGQTLREQFEADLA---IEYDVLNRLKPGIVMCREKQDTTSA 119
Query: 70 YNFLQLLDLQTAQLEEMESQMNHIGQIGV 98
+++ + ++ +E+Q+ + ++G
Sbjct: 120 VLLEKIVADEEEHIDYLETQLELMDKLGE 148
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 27.9 bits (61), Expect = 7.5
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 1/99 (1%)
Query: 311 AGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMDDHVNFGQPQAVRNGGIVPRDQDLPGW 370
++ P R + + G + D
Sbjct: 380 GQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSNPKRGFYIRALFDYDKT 439
Query: 371 VPKNYIEKDELSFQESAVIYVLKKNDDGWWEGVMDGITG 409
LSF+ V++V+ D+ WW+
Sbjct: 440 -KDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDS 477
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 27.5 bits (60), Expect = 8.3
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDG 406
L F V +VL G + G
Sbjct: 17 PPSGLGFTRGDVFHVLDTLHPGPGQSHARG 46
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase;
2.70A {Homo sapiens}
Length = 211
Score = 27.4 bits (61), Expect = 8.5
Identities = 9/77 (11%), Positives = 17/77 (22%)
Query: 262 QQQQAQLAHHLQQQQMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPP 321
Q Q + + S + + Q + + P P
Sbjct: 134 MGQLLQYESEILPSTPNPQPPSCQGEAAGSSLIGHLQTLSPDMQGAYCTFPASVLAPVPT 193
Query: 322 PSMQQRSSSPPLPPPPT 338
S S P+ +
Sbjct: 194 HSTVSELSRSPVATATS 210
>3cxn_A Urease accessory protein UREF; helical, nickel, chaperone; HET:
MSE; 1.55A {Helicobacter pylori} PDB: 3o1q_A 2wgl_A
3sf5_A
Length = 274
Score = 27.6 bits (60), Expect = 8.5
Identities = 7/52 (13%), Positives = 13/52 (25%)
Query: 282 MGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPL 333
MG++ + P+ + S PP P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDKGKSVKSTEKSVGMPPKTPKTDNNAHVDNE 52
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in
transferase-transferase inhibitor complex; HET: JBI;
2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Length = 464
Score = 27.5 bits (61), Expect = 8.9
Identities = 12/60 (20%), Positives = 17/60 (28%)
Query: 285 NPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQMD 344
+ N + P P A S+ S S Q +S SAG +
Sbjct: 402 EEKTKNGVVKGQPSPSGAAVNSSESLPPSSSVNDISSMSTDQTLASDTDSSLEASAGPLG 461
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 27.3 bits (60), Expect = 9.2
Identities = 7/55 (12%), Positives = 14/55 (25%), Gaps = 4/55 (7%)
Query: 288 MGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPPLPPPPTSAGQ 342
M + H + + + + PP Q + P P +
Sbjct: 1 MAHHHHHHVDDDDKMYQSAIKVE----PASPPYYSEKTQLYNKPHEEPSNSLMAI 51
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 27.5 bits (60), Expect = 9.8
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDG 406
+SF+ ++V +K ++ WW G +
Sbjct: 58 PGMAISFEAKDFLHVKEKFNNDWWIGRLVK 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.399
Gapped
Lambda K H
0.267 0.0437 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,593,873
Number of extensions: 400000
Number of successful extensions: 2699
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1813
Number of HSP's successfully gapped: 411
Length of query: 420
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 324
Effective length of database: 4,021,377
Effective search space: 1302926148
Effective search space used: 1302926148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.2 bits)