RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9761
(420 letters)
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 72.8 bits (179), Expect = 4e-17
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPCV 420
E+DEL F+ V+ VL ++ WW G + GLFP NYV P +
Sbjct: 14 EEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM 57
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 72.0 bits (177), Expect = 8e-17
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL F+ I+V+ +D WW+G G TG+FP NYV P
Sbjct: 14 EDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 55
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 71.7 bits (176), Expect = 1e-16
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEPC 419
+ ++L FQE +I VL K ++ W EG G G+FP +VE
Sbjct: 18 QPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS 60
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 70.5 bits (173), Expect = 3e-16
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E EL+F+ VI ++ K+D WWEG ++ G+FP NYV P
Sbjct: 15 ESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP 56
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 68.6 bits (168), Expect = 1e-15
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E++ ++ ++ +L + WW+ ++ G P YV+
Sbjct: 13 SPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 67.8 bits (166), Expect = 2e-15
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
E +EL+F+ +I VL +D WW+G TGLFP N+V
Sbjct: 15 EDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT 55
Score = 26.2 bits (58), Expect = 1.5
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 369 GWVPKNYIEKD 379
G P N++ D
Sbjct: 47 GLFPSNFVTTD 57
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 65.9 bits (161), Expect = 1e-14
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEG-VMDGITGLFPGNYVEP 418
++++L F++ ++ + K ++ WW +G G+ P YVE
Sbjct: 14 DEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK 56
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 64.1 bits (156), Expect = 8e-14
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+DELS + +IYV + + GWWEG ++G TG FP NYV
Sbjct: 23 NEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVRE 64
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 63.6 bits (155), Expect = 9e-14
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418
+ DE+SF++ I ++ D+GW G + G TG+ P NYVE
Sbjct: 16 DADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59
>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 69
Score = 63.3 bits (154), Expect = 1e-13
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E +L+F E I V +K D WW G + +G+FP NYV+P
Sbjct: 21 EPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKP 61
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 62.9 bits (153), Expect = 1e-13
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVEP 418
+ +LSF++ + ++ + WW G TG P NYV P
Sbjct: 15 TETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAP 58
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 62.8 bits (153), Expect = 1e-13
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV--MDGITGLFPGNYVEP 418
+D+LSF + +L ++ WWE G TG P NYV P
Sbjct: 13 TEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 62.5 bits (152), Expect = 2e-13
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
++L ++ ++L++++ WW +G G P NYV
Sbjct: 21 NANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTE 63
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 62.0 bits (151), Expect = 3e-13
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLK-KNDDGWWEGVMDGITGLFPGNYVE 417
DELSF+ ++ VL + D W++ ++G G P NY+E
Sbjct: 13 ADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 61.7 bits (150), Expect = 5e-13
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDG-ITGLFPGNYVEP 418
+DEL+F +SA+I ++K + GWW G G FP NYVE
Sbjct: 19 REDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEE 61
>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo
sapiens) [TaxId: 9606]}
Length = 65
Score = 60.2 bits (146), Expect = 1e-12
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWW-EGVMDGITGLFPGNYVEP 418
++LSFQ+ + VL+++ + W + G P NYV
Sbjct: 17 HHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVAR 59
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 61.5 bits (149), Expect = 1e-12
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 29/78 (37%)
Query: 369 GWVPKNYIEK-----------------------------DELSFQESAVIYVLKKNDDGW 399
GW P ++++ DELSF + +I V+ K+D W
Sbjct: 10 GWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDW 69
Query: 400 WEGVMDGITGLFPGNYVE 417
W+G ++G+TGLFP NYV+
Sbjct: 70 WQGEINGVTGLFPSNYVK 87
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 59.8 bits (145), Expect = 1e-12
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM--DGITGLFPGNYVE 417
E +EL+F E+ I ++ DD WW G + DG GLFP NYV
Sbjct: 13 EDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVS 55
>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 57
Score = 59.8 bits (145), Expect = 2e-12
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPGNYVEP 418
+ LS + + VL N W E G P NY+ P
Sbjct: 13 GDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 55
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 59.8 bits (145), Expect = 2e-12
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVEP 418
E +L + +L+KND WW G G P NYV
Sbjct: 15 EAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTG 57
Score = 25.9 bits (57), Expect = 2.5
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 369 GWVPKNYIEKDELS 382
G++P NY+ + +
Sbjct: 48 GYIPSNYVTGKKSN 61
>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 74
Score = 59.4 bits (144), Expect = 3e-12
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
+ + L+F + +I VL+ + WW G + G G FP +YV+
Sbjct: 23 KDNHLNFSKHDIITVLE-QQENWWFGEVHGGRGWFPKSYVKI 63
>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 58.6 bits (142), Expect = 4e-12
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 377 EKDELSFQESAVIYVLKKND--DGWWEGVMDGITGLFPGNYVE 417
E +L F++ VI +LKK+D + WW G ++G G+FP NYVE
Sbjct: 14 ESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus
[TaxId: 10090]}
Length = 53
Score = 58.0 bits (140), Expect = 7e-12
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGV-MDGITGLFPGNYVE 417
+ EL+ + Y+L ++ WW +G G P +Y+
Sbjct: 11 DPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52
>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 63
Score = 57.9 bits (140), Expect = 1e-11
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDD---GWWEGVMDGITGLFPGNYVEP 418
DEL +E + ++ + D+ WW ++ G P N +
Sbjct: 17 NDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 61
>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 53
Score = 56.4 bits (136), Expect = 2e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVE 417
E DE+S E + V+ K DGWW D +TG FP Y++
Sbjct: 13 EGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 58.5 bits (141), Expect = 2e-11
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E DE+S E + V+ K DGWW D +TG FP Y++
Sbjct: 27 EGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQK 68
>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 56.8 bits (137), Expect = 2e-11
Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWW-EGVMDGITGLFPGNYVEP 418
+L F++ + +L+++ + W + + G G P N+V
Sbjct: 19 HDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61
>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 55.3 bits (133), Expect = 6e-11
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
E++ V+ V++K++ GWW M G P +++EP
Sbjct: 15 SGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP 56
>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 55.7 bits (134), Expect = 9e-11
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 377 EKDELSFQESAVIYVLKKND----DGWWEGVMDGITGLFPGNYVEP 418
+ELS + + +L+ D WW ++G G P NY+
Sbjct: 26 NPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRK 71
>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 69
Score = 55.3 bits (133), Expect = 9e-11
Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 365 QDLPGWVPKNYIEKDELSFQESAVIYVLKKND-DGWWEG--VMDGITGLFPGNYVEPCV 420
Q+ G P L ++ + K WWEG G FP N V P V
Sbjct: 11 QEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 69
>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 54.9 bits (132), Expect = 1e-10
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 377 EKDELSFQESAVIYVLKKND-----DGWWEG-VMDGITGLFPGNYVE 417
+ E++ ++ ++ +L K D WW+ +G G P NY+E
Sbjct: 19 PEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 65
>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 55.3 bits (133), Expect = 1e-10
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM-----DGITGLFPGNYVEPC 419
++LS +I +LKKN GWW+G + G FP ++V+
Sbjct: 20 GSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67
>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 71
Score = 54.5 bits (131), Expect = 2e-10
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDD--GWWEGV-MDGITGLFPGNYVEP 418
++EL+F++ + V++K ++ WW+ G GL P NYV
Sbjct: 19 TEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63
>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 53.7 bits (129), Expect = 3e-10
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEGVMDGITGLFPGNYVEP 418
ELSF V + + GW EG ++G TGL P NYVE
Sbjct: 23 HDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65
>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId:
10090]}
Length = 59
Score = 53.0 bits (127), Expect = 4e-10
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVMDGITGLFPGNYVEP 418
ELS + V+ +L W G +G P N ++
Sbjct: 14 NSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55
>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 83
Score = 53.4 bits (128), Expect = 5e-10
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 15/57 (26%)
Query: 377 EKDELSFQESAVIYVLKKND-----DGWWEGVMD----------GITGLFPGNYVEP 418
+ DEL + V+ V+ + +GW GV + G+FP N+ E
Sbjct: 25 DTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER 81
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA
1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 52.1 bits (125), Expect = 1e-09
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 377 EKDELSFQESAVIYVLKKND-DGWWEGVM--DGITGLFPGNYVEP 418
K LSF + V+ +L + DGW G G FP +Y +
Sbjct: 21 NKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 51.0 bits (122), Expect = 3e-09
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 377 EKDELSFQESAVIYVL-KKNDDGWWEGVM-DGITGLFPGNYVEP 418
+ +L F + V+ ++ D W++ G G+ P NYV+
Sbjct: 19 AEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK 62
>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 56
Score = 49.5 bits (118), Expect = 6e-09
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWWEGVM---DGITGLFPGNYVE 417
+ DE++ I ++ ++ W + G TGL P Y+
Sbjct: 12 DDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55
>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 50.1 bits (119), Expect = 1e-08
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 377 EKDELSFQESAVIYVLKKND--DGWWEGVMDGITGLFPGNYVEPC 419
DE+SF +I V +K GW G G G FP NYVE
Sbjct: 18 NHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKM 62
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 47.8 bits (113), Expect = 4e-08
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 377 EKDELSFQESAVIYVLKKNDDGWW------EGVMDGITGLFPGNYVEP 418
+++E+ + V+ VL N G PG+ + P
Sbjct: 20 KENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67
>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 96
Score = 47.0 bits (111), Expect = 1e-07
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 379 DELSFQESAVIYVLKKNDDGWW--EGVMDGITGLFPGNYVEPC 419
EL +YV D+ + ++DG GL P N+V+
Sbjct: 38 AELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFV 80
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 43.9 bits (103), Expect = 2e-06
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 374 NYIEKDELSFQESAVIYVLKKNDDGWWEGV------MDGITGLFPGNYVE 417
LSF+ V++V+ D+ WW+ G P
Sbjct: 16 CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65
>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha
subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 42.1 bits (98), Expect = 5e-06
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 17/59 (28%)
Query: 377 EKDELSFQESAVIYVLKKN---------------DDGWWEGV--MDGITGLFPGNYVEP 418
++++ ++ V K + + GW G G G FPG YVE
Sbjct: 16 REEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEY 74
>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 40.9 bits (95), Expect = 2e-05
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 377 EKDELSFQESAVIYVLKKND----DGWWEGVMDGITGLFPGNYVEPC 419
+ ++S E ++ V+KK D W G ++++P
Sbjct: 30 QDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY 76
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 39.9 bits (93), Expect = 4e-05
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEGVM---DGITGLFPGNYV 416
+SF+ ++V +K ++ WW G + G P
Sbjct: 44 AISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK 83
>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 40.1 bits (93), Expect = 5e-05
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 11/52 (21%)
Query: 377 EKDELSFQESAVIYVLKKND---DGWWEGVM--------DGITGLFPGNYVE 417
+ L+ V+YV K +W G + G FP + V
Sbjct: 34 DCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVR 85
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 33.9 bits (77), Expect = 0.014
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEG---VMDGITGLFPGNYVE 417
+SF +++ +K ++ WW G G P
Sbjct: 46 AVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRL 86
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 33.5 bits (76), Expect = 0.017
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 380 ELSFQESAVIYVLKKNDDGWWEG--VMDGITGLFPGNYVE 417
++F+ +++ +K + WW G V +G F +
Sbjct: 46 GVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR 85
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 44
Score = 25.7 bits (56), Expect = 1.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 363 RDQDLPGWVPKNYIEKD 379
+D P WVP +YI D
Sbjct: 23 KDGHSPSWVPSSYIAAD 39
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
(KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 26.1 bits (57), Expect = 4.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 388 VIYVLKKNDDGWWEGVMDG 406
V+ L K + WW +++G
Sbjct: 93 VLVNLSKVGEYWWNAILEG 111
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 25.7 bits (56), Expect = 6.9
Identities = 12/57 (21%), Positives = 19/57 (33%)
Query: 276 QMMSANMGNNPQMGNSHMANNPQPPNAHPPPSQYQAGMMSQQPPPPPSMQQRSSSPP 332
+ + PQ + NPQ P Q + Q P + +S+PP
Sbjct: 7 AAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPP 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.131 0.399
Gapped
Lambda K H
0.267 0.0580 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,612,807
Number of extensions: 79039
Number of successful extensions: 362
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 74
Length of query: 420
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,199,356
Effective search space: 398186192
Effective search space used: 398186192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (24.9 bits)