BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9762
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JCQ|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And The
Peptidomimetic Inhibitor L-739,750
pdb|1LD7|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 66
pdb|1LD8|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 49
pdb|1MZC|A Chain A, Co-Crystal Structure Of Human Farnesyltransferase With
Farnesyldiphosphate And Inhibitor Compound 33a
pdb|1SA4|A Chain A, Human Protein Farnesyltransferase Complexed With Fpp And
R115777
pdb|1S63|A Chain A, Human Protein Farnesyltransferase Complexed With L-778,123
And Fpp
pdb|1TN6|A Chain A, Protein Farnesyltransferase Complexed With A Rap2a Peptide
Substrate And A Fpp Analog At 1.8a Resolution
pdb|2H6F|A Chain A, Protein Farnesyltransferase Complexed With A Farnesylated
Ddptasacvls Peptide Product At 1.5a Resolution
pdb|2H6G|A Chain A, W102t Protein Farnesyltransferase Mutant Complexed With A
Geranylgeranylated Ddptasacvls Peptide Product At 1.85a
Resolution
pdb|2H6H|A Chain A, Y365f Protein Farnesyltransferase Mutant Complexed With A
Farnesylated Ddptasacvls Peptide Product At 1.8a
pdb|2H6I|A Chain A, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT
COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide
Product At 3.0a
pdb|2IEJ|A Chain A, Human Protein Farnesyltransferase Complexed With Inhibitor
Compound Stn-48 And Fpp Analog At 1.8a Resolution
Length = 382
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W R Q+ I+D++ +A
Sbjct: 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLRDPSQELEFIADILNQDA 197
>pdb|2F0Y|A Chain A, Crystal Structure Of Human Protein Farnesyltransferase
Complexed With Farnesyl Diphosphate And Hydantoin
Derivative
pdb|3E37|A Chain A, Protein Farnesyltransferase Complexed With Bisubstrate
Ethylenediamine Scaffold Inhibitor 5
Length = 379
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W R Q+ I+D++ +A
Sbjct: 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLRDPSQELEFIADILNQDA 197
>pdb|1NL4|A Chain A, Crystal Structure Of Rat Farnesyl Transferase In Complex
With A Potent Biphenyl Inhibitor
Length = 312
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 87 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 143
>pdb|2BED|A Chain A, Structure Of Fpt Bound To Inhibitor Sch207736
Length = 313
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 88 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 144
>pdb|1N95|A Chain A, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase:
Glycine, Phenylalanine And Histidine Derivatives
pdb|1N9A|A Chain A, Farnesyltransferase Complex With Tetrahydropyridine
Inhibitors
pdb|1NI1|A Chain A, Imidazole And Cyanophenyl Farnesyl Transferase Inhibitors
Length = 315
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 87 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 143
>pdb|2R2L|A Chain A, Structure Of Farnesyl Protein Transferase Bound To Pb-93
Length = 315
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 88 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 144
>pdb|1QBQ|A Chain A, Structure Of Rat Farnesyl Protein Transferase Complexed
With A Cvim Peptide And Alpha-Hydroxyfarnesylphosphonic
Acid
Length = 333
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 97 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 153
>pdb|1O5M|A Chain A, Structure Of Fpt Bound To The Inhibitor Sch66336
pdb|2ZIR|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Benzofuran Inhibitor And Fpp
pdb|2ZIS|A Chain A, Crystal Structure Of Rat Protein Farnesyltransferase
Complexed With A Bezoruran Inhibitor And Fpp
pdb|3KSL|A Chain A, Structure Of Fpt Bound To Datfp-Dh-Gpp
pdb|3KSQ|A Chain A, Discovery Of C-Imidazole Azaheptapyridine Fpt Inhibitors
Length = 377
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 141 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 197
>pdb|1O1R|A Chain A, Structure Of Fpt Bound To Ggpp
pdb|1O1S|A Chain A, Structure Of Fpt Bound To Isoprenoid Analog 3b
pdb|1O1T|A Chain A, Structure Of Fpt Bound To The Cvim-Fpp Product
Length = 380
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 49 LSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQ---ISDVIQSEA 103
L ++ L E++NY+T + QP + ++VL + W + Q+ I+D++ +A
Sbjct: 144 LRSLQKDLQEEMNYITAIIEEQPKNYQVWHHRRVL-VEWLKDPSQELEFIADILNQDA 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,355,023
Number of Sequences: 62578
Number of extensions: 58223
Number of successful extensions: 152
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 9
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)