BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9762
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VVS4|MED11_DROME Mediator of RNA polymerase II transcription subunit 11
OS=Drosophila melanogaster GN=MED11 PE=1 SV=1
Length = 176
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/107 (66%), Positives = 89/107 (83%), Gaps = 2/107 (1%)
Query: 1 MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
+++I LD+IEK+II C+QSAGQAL EL KEKSS K AE+QS FLK+LS VE+KL+EQI
Sbjct: 4 LDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLKSLSSVESKLSEQI 63
Query: 61 NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQSEADY 105
NYLTQVSTGQPHEGSGYAS KVLQMAWHR AR ++ ++ +++A +
Sbjct: 64 NYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRVRELEETKAKH 110
>sp|Q17NH9|MED11_AEDAE Mediator of RNA polymerase II transcription subunit 11 OS=Aedes
aegypti GN=MED11 PE=3 SV=1
Length = 132
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 80/89 (89%)
Query: 1 MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
+++IQVLD IEK+++ CLQSAGQALLELSKEK+S K E+ ++ FLK+L+ VE+KL+EQI
Sbjct: 4 IDKIQVLDSIEKELLLCLQSAGQALLELSKEKTSQKATETHTNQFLKSLNIVESKLSEQI 63
Query: 61 NYLTQVSTGQPHEGSGYASQKVLQMAWHR 89
NYLTQVSTGQPHEGSGYA+ KVLQMAWHR
Sbjct: 64 NYLTQVSTGQPHEGSGYAAAKVLQMAWHR 92
>sp|Q9D8C6|MED11_MOUSE Mediator of RNA polymerase II transcription subunit 11 OS=Mus
musculus GN=Med11 PE=3 SV=1
Length = 117
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 74/102 (72%), Gaps = 2/102 (1%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG A+LELSKEK++ + + Q+ F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTTSVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR +ISDV ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKISDVART 110
>sp|Q9P086|MED11_HUMAN Mediator of RNA polymerase II transcription subunit 11 OS=Homo
sapiens GN=MED11 PE=1 SV=2
Length = 117
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG +LELSKEK++ + + Q+ F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++SDV ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110
>sp|Q32L03|MED11_BOVIN Mediator of RNA polymerase II transcription subunit 11 OS=Bos
taurus GN=MED11 PE=3 SV=1
Length = 117
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 73/102 (71%), Gaps = 2/102 (1%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG +LELSKEK++ + + Q+ F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++S+V ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRLDYARLKLSEVART 110
>sp|A3KNK7|MED11_DANRE Mediator of RNA polymerase II transcription subunit 11 OS=Danio
rerio GN=med11 PE=2 SV=2
Length = 114
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 66/89 (74%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
+R++ L+ +EK+I LQSAG +LELSKEK++ + Q + F +++ VE++L+ QI
Sbjct: 4 DRLRALEDVEKEIALVLQSAGTIVLELSKEKANASLLDRQLNQFQTSINRVESELSSQIR 63
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS 90
YLTQV+TGQPHEGS Y+++K QMA +R+
Sbjct: 64 YLTQVATGQPHEGSTYSARKDCQMALNRA 92
>sp|Q68EW7|MED11_XENLA Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus
laevis GN=med11 PE=3 SV=1
Length = 118
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 64/88 (72%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
ER++ L++IE++I L +AG A+LELSKEK + + + Q+ F ++ VE++L+ QI
Sbjct: 9 ERLRALEEIEREIAAILLNAGNAILELSKEKPNERMLDKQAAQFTASVQRVESELSGQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHR 89
YLTQV+TGQPHEGS Y+++K MA +R
Sbjct: 69 YLTQVATGQPHEGSSYSARKDGTMALNR 96
>sp|Q6P255|MED11_XENTR Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus
tropicalis GN=med11 PE=3 SV=1
Length = 118
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 63/88 (71%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
ER++ L++IE++I L +AG +LELSKEK + + + Q+ F ++ VE++L+ QI
Sbjct: 9 ERLRALEEIEREIAAILLNAGNVILELSKEKPNERVLDKQATQFTASVQRVESELSGQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHR 89
YLTQV+TGQPHEGS Y+++K MA +R
Sbjct: 69 YLTQVATGQPHEGSSYSARKDGTMALNR 96
>sp|Q9BI74|MED11_CAEEL Mediator of RNA polymerase II transcription subunit 11
OS=Caenorhabditis elegans GN=mdt-11 PE=3 SV=1
Length = 188
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLK-QAESQSHNFLKTLSHVETKLTEQI 60
+RIQ + EK I ++ A + + +L KEK K + E ++NF K ++ VE +L+ Q+
Sbjct: 12 DRIQAIVTTEKSIDEMMKCAREIIQDLGKEKQIGKNKMEDNANNFKKLITQVENELSAQM 71
Query: 61 NYLTQVSTGQPHEGSGYA 78
YL+ V G H+GS +
Sbjct: 72 QYLSHVCVGSSHQGSTFG 89
>sp|Q612X6|MED11_CAEBR Mediator of RNA polymerase II transcription subunit 11
OS=Caenorhabditis briggsae GN=mdt-11 PE=3 SV=2
Length = 193
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQI 60
+RIQ + EK+I ++ A + + +L KEK S + + +++F K ++ VE +L+ Q+
Sbjct: 12 DRIQAIVATEKNIDDMMKCAREIMQDLGKEKQISKNKMDDNANSFKKLITQVENELSAQM 71
Query: 61 NYLTQVSTGQPHEGSGYA 78
YL+ V G H+GS +
Sbjct: 72 QYLSHVCVGSSHQGSTFG 89
>sp|Q50328|ATPD_MYCPN ATP synthase subunit delta OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=atpH PE=3 SV=1
Length = 178
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 19 QSAGQALLELSKEKSSLKQAESQSHNFLK 47
Q+ G AL +LS+E+ +K+ QSH+FLK
Sbjct: 5 QAFGMALFQLSEEEKKVKKVYDQSHDFLK 33
>sp|Q4R9F7|REXON_MACFA Putative RNA exonuclease NEF-sp OS=Macaca fascicularis
GN=QtsA-10054 PE=2 SV=1
Length = 772
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 5 QVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVE 53
++L ++ CL S GQ LL L++E + + A S++ +K LS+ E
Sbjct: 413 EILQHPNTSVLECLDSVGQKLLFLTRETDAGELASSRNCQTIKCLSNKE 461
>sp|P43268|ETV4_HUMAN ETS translocation variant 4 OS=Homo sapiens GN=ETV4 PE=1 SV=3
Length = 484
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Query: 58 EQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQS 101
EQ N+L T QPH G GY + H S QQ D+ S
Sbjct: 158 EQRNFLRSSGTSQPHPGHGYLGE-------HSSVFQQPLDICHS 194
>sp|Q8XA47|QSEE_ECO57 Sensor histidine kinase QseE OS=Escherichia coli O157:H7 GN=qseE
PE=1 SV=2
Length = 475
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 18 LQSAGQALLELSKEKSSLKQAESQSHNFLKTLSH 51
L+S GQ +L LS+ S L ESQ H FL+ LSH
Sbjct: 229 LRSVGQRILWLSERLSWL---ESQRHQFLRHLSH 259
>sp|P52101|GLRK_ECOLI Sensor histidine kinase GlrK OS=Escherichia coli (strain K12)
GN=glrK PE=1 SV=3
Length = 475
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 18 LQSAGQALLELSKEKSSLKQAESQSHNFLKTLSH 51
L+S GQ +L LS+ S L ESQ H FL+ LSH
Sbjct: 229 LRSVGQRILWLSERLSWL---ESQRHQFLRHLSH 259
>sp|Q96IC2|REXON_HUMAN Putative RNA exonuclease NEF-sp OS=Homo sapiens GN=44M2.3 PE=2 SV=1
Length = 774
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 5 QVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVE 53
+VL ++ CL S GQ LL L++E + + S++ +K LS+ E
Sbjct: 413 EVLQHPNTSVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKE 461
>sp|G5EB19|PPOA_EMENI Psi-producing oxygenase A OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ppoA
PE=3 SV=1
Length = 1081
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 38 AESQSHNFLKTLSHVETKLTEQI-NYLTQVSTGQPHEGSGYASQKVLQMA 86
AES K LSHV+ K + + +TG+P + Y ++V+Q+A
Sbjct: 42 AESTQTGLAKDLSHVDLKDVRTLAEVVKSAATGEPVDDKQYIMERVIQLA 91
>sp|Q6RET3|PPOA_EMEND Psi-producing oxygenase A OS=Emericella nidulans GN=ppoA PE=1
SV=1
Length = 1081
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 38 AESQSHNFLKTLSHVETKLTEQI-NYLTQVSTGQPHEGSGYASQKVLQMA 86
AES K LSHV+ K + + +TG+P + Y ++V+Q+A
Sbjct: 42 AESTQTGLAKDLSHVDLKDVRTLAEVVKSAATGEPVDDKQYIMERVIQLA 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,122,423
Number of Sequences: 539616
Number of extensions: 1034470
Number of successful extensions: 3337
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3309
Number of HSP's gapped (non-prelim): 42
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)