Query psy9762
Match_columns 112
No_of_seqs 48 out of 50
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 18:55:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r84_A Mediator of RNA polymer 99.4 8E-13 2.7E-17 90.9 8.0 64 2-65 5-72 (86)
2 4gwp_A Mediator of RNA polymer 98.4 2E-06 6.9E-11 61.8 8.3 64 2-65 8-75 (115)
3 3rj1_A Mediator of RNA polymer 98.1 5E-08 1.7E-12 71.5 -4.6 64 2-65 24-91 (131)
4 4h63_K Mediator of RNA polymer 97.3 0.0012 3.9E-08 46.7 7.9 65 3-68 20-84 (112)
5 1deq_A Fibrinogen (alpha chain 79.6 23 0.0008 29.7 10.8 60 6-65 57-127 (390)
6 3ghg_A Fibrinogen alpha chain; 72.0 16 0.00054 32.0 8.1 82 6-101 54-150 (562)
7 2de0_X Alpha-(1,6)-fucosyltran 65.4 62 0.0021 27.4 12.1 80 10-99 57-137 (526)
8 3mfq_A TROA, high-affinity zin 60.4 29 0.00098 26.5 6.8 50 14-63 109-159 (282)
9 1pq4_A Periplasmic binding pro 46.6 43 0.0015 25.5 5.8 51 14-64 138-189 (291)
10 3hh8_A Metal ABC transporter s 45.4 33 0.0011 26.3 5.0 49 15-63 130-179 (294)
11 2prs_A High-affinity zinc upta 45.3 41 0.0014 25.4 5.4 52 14-65 122-174 (284)
12 3ujp_A Mn transporter subunit; 44.4 55 0.0019 25.5 6.2 48 15-62 137-185 (307)
13 1m1j_A Fibrinogen alpha subuni 43.1 1.6E+02 0.0055 25.3 11.8 60 6-65 55-125 (491)
14 1aep_A Apolipophorin III; lipo 42.4 95 0.0033 22.5 8.7 78 17-103 18-106 (161)
15 1xvl_A Mn transporter, MNTC pr 42.0 51 0.0017 25.7 5.6 48 15-62 151-199 (321)
16 3cx3_A Lipoprotein; zinc-bindi 41.4 37 0.0013 25.7 4.6 50 14-63 125-175 (284)
17 2o1e_A YCDH; alpha-beta protei 39.8 63 0.0021 25.0 5.8 50 14-63 138-188 (312)
18 3p8c_F ABL interactor 2; actin 39.6 1.1E+02 0.0038 22.5 7.6 68 5-98 46-113 (159)
19 4ioe_A Secreted protein ESXB; 37.7 68 0.0023 19.4 8.2 61 7-67 21-83 (93)
20 3gi1_A LBP, laminin-binding pr 37.1 35 0.0012 26.0 3.9 51 14-64 127-178 (286)
21 1toa_A Tromp-1, protein (perip 35.8 44 0.0015 25.9 4.4 51 14-64 143-194 (313)
22 3ls0_A SLL1638 protein, PSBQ; 32.4 40 0.0014 24.2 3.3 41 66-106 4-51 (133)
23 2aze_B Transcription factor E2 30.6 44 0.0015 22.7 3.2 32 4-35 15-46 (106)
24 4fla_A Regulation of nuclear P 27.5 1.7E+02 0.0058 20.9 6.6 51 13-66 100-150 (152)
25 1got_G GT-gamma; complex (GTP- 26.8 20 0.00068 23.1 0.8 28 82-109 30-58 (73)
26 3l4q_C Phosphatidylinositol 3- 24.8 2.1E+02 0.0072 21.1 10.1 49 40-90 52-105 (170)
27 2fup_A Hypothetical protein PA 24.0 1.6E+02 0.0056 19.6 6.1 15 68-83 131-145 (157)
28 2pih_A Protein YMCA; regulate 21.1 1.7E+02 0.0058 20.4 4.9 49 32-80 85-133 (151)
29 4abx_A DNA repair protein RECN 21.0 2.2E+02 0.0075 19.9 9.1 19 88-106 122-142 (175)
30 1ls4_A Apolp-III, apolipophori 20.2 2.6E+02 0.009 20.5 6.6 54 16-78 36-91 (180)
No 1
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=99.40 E-value=8e-13 Score=90.94 Aligned_cols=64 Identities=28% Similarity=0.416 Sum_probs=60.7
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKS----SLKQAESQSHNFLKTLSHVETKLTEQINYLTQ 65 (112)
Q Consensus 2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek~----s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq 65 (112)
|||++|++|+++|+++|++|++++..|+++|. .+.+|+.++.+|.++|..|...|+.||++|--
T Consensus 5 ERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdE 72 (86)
T 3r84_A 5 ERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999774 68999999999999999999999999999854
No 2
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=98.35 E-value=2e-06 Score=61.82 Aligned_cols=64 Identities=30% Similarity=0.429 Sum_probs=59.1
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEK----SSLKQAESQSHNFLKTLSHVETKLTEQINYLTQ 65 (112)
Q Consensus 2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek----~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq 65 (112)
|||..|++|+-+|++++++|++++.-+|..| ..+.+|+.|+.+|...|..|=..|+.+|+.|-.
T Consensus 8 ERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~lDe 75 (115)
T 4gwp_A 8 ERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE 75 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999988644 458899999999999999999999999999865
No 3
>3rj1_A Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae}
Probab=98.11 E-value=5e-08 Score=71.52 Aligned_cols=64 Identities=30% Similarity=0.429 Sum_probs=59.0
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEK----SSLKQAESQSHNFLKTLSHVETKLTEQINYLTQ 65 (112)
Q Consensus 2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek----~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq 65 (112)
|||+.|++|+.+|+++|++|++++.-|+..| ..+.+|+.|+.+|...|..|-..|+.||.-|--
T Consensus 24 ERL~sL~~ID~~ivsLL~~aS~~~~tls~~k~g~~~~K~qF~~~t~~fy~~L~~v~v~LRkEIk~LDE 91 (131)
T 3rj1_A 24 ERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE 91 (131)
T ss_dssp HHTTTTTTTTTTTHHHHSTTTHHHHHHHHSCCSTTTTHHHHHHHHHHHHGGGTTTTTTTTTTTSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999865 268899999999999999999999999987654
No 4
>4h63_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}
Probab=97.31 E-value=0.0012 Score=46.71 Aligned_cols=65 Identities=26% Similarity=0.348 Sum_probs=57.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9762 3 RIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVST 68 (112)
Q Consensus 3 RL~~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~t 68 (112)
-++-+-+||++|-.++.+||.||+-.- +.-|-+.|..++.+|+.++.-|-+.|+.|.--|..|-+
T Consensus 20 ~~~~I~EiE~rIPDILsSA~~CIEAI~-~~~SiE~F~~~sr~F~~TVEFiSTGL~RQ~L~LEK~E~ 84 (112)
T 4h63_K 20 QVQNILELEAKIPDILSSAGKCIEAIQ-LNNSLEDFRKYSKEFLETVEFISTGLRRQALELEKAEV 84 (112)
T ss_dssp HHHHHHHHHHHSTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHhHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC
Confidence 467788999999999999999998764 45577889999999999999999999999998887653
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.61 E-value=23 Score=29.66 Aligned_cols=60 Identities=13% Similarity=0.368 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhh
Q psy9762 6 VLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLK-----------TLSHVETKLTEQINYLTQ 65 (112)
Q Consensus 6 ~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~-----------sl~~VE~eLs~qI~yLsq 65 (112)
.|++.||+|-.-+..=.+-+.++++-..+....-+.+.++++ .+.+|=.+|..||.||-.
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~ 127 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRR 127 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 578899999888888888888888866555555555544443 567777899999999865
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.04 E-value=16 Score=32.03 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q psy9762 6 VLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSH-----------NFLKTLSHVETKLTEQINYLTQVSTGQPHEG 74 (112)
Q Consensus 6 ~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~-----------~F~~sl~~VE~eLs~qI~yLsqV~tg~phEg 74 (112)
.|++.|+++...|.-=.+-+.++++-..+..++-++.. +.-..+++|=.+|..+|.||-.
T Consensus 54 lLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKe--------- 124 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKR--------- 124 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHH---------
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHH---------
Confidence 47888888888888888888888653333332222222 3334555666689999999866
Q ss_pred CchhHHHHHHHHHHHH----HHHHHHHHHHH
Q psy9762 75 SGYASQKVLQMAWHRS----ARQQISDVIQS 101 (112)
Q Consensus 75 S~Y~a~kd~emA~~rv----~~~~l~~l~~~ 101 (112)
..|.++..-|+ ++.++.+|+|.
T Consensus 125 -----kVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 125 -----KVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555544444 55555566554
No 7
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=65.41 E-value=62 Score=27.35 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHHHHHHH-HHH
Q psy9762 10 IEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQM-AWH 88 (112)
Q Consensus 10 iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEgS~Y~a~kd~em-A~~ 88 (112)
++..|-.+.-.=..-+..|.+.+ .+.+......|++.+.+.+..|-.+|.+|.++. +|..-...+. -+.
T Consensus 57 ~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--------g~~~~r~~~~~~lt 126 (526)
T 2de0_X 57 IENGAKELWFFLQSELKKLKNLE--GNELQRHADEFLLDLGHHERSIMTDLYYLSQTD--------GAGDWREKEAKDLT 126 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------THHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhhccC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------chhHHHHHHHHHHH
Confidence 44445555555556777787744 556777999999999999999999999999976 4444222222 334
Q ss_pred HHHHHHHHHHH
Q psy9762 89 RSARQQISDVI 99 (112)
Q Consensus 89 rv~~~~l~~l~ 99 (112)
++|..+|..+|
T Consensus 127 ~~vq~~i~~~Q 137 (526)
T 2de0_X 127 ELVQRRITYLQ 137 (526)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 44555666554
No 8
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=60.41 E-value=29 Score=26.46 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYL 63 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yL 63 (112)
...+.+-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-+
T Consensus 109 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~ 159 (282)
T 3mfq_A 109 IPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVI 159 (282)
T ss_dssp HHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566778888889998777 899999999999999999999999887654
No 9
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=46.58 E-value=43 Score=25.55 Aligned_cols=51 Identities=20% Similarity=0.189 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYLT 64 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLs 64 (112)
...+.+-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-+.
T Consensus 138 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~ 189 (291)
T 1pq4_A 138 PTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLP 189 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45667778888888888676 8899999999999999999999999886543
No 10
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=45.37 E-value=33 Score=26.32 Aligned_cols=49 Identities=6% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9762 15 ITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYL 63 (112)
Q Consensus 15 ~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yL 63 (112)
..+.+-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-+
T Consensus 130 ~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~ 179 (294)
T 3hh8_A 130 ENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAI 179 (294)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4556667777888888666 889999999999999999999998877654
No 11
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=45.32 E-value=41 Score=25.41 Aligned_cols=52 Identities=15% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYLTQ 65 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq 65 (112)
...+.+-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-+.+
T Consensus 122 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~ 174 (284)
T 2prs_A 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKG 174 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566677778888888666 88999999999999999999999998875543
No 12
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=44.45 E-value=55 Score=25.45 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9762 15 ITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINY 62 (112)
Q Consensus 15 ~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~y 62 (112)
..+.+-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-
T Consensus 137 ~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~ 185 (307)
T 3ujp_A 137 RNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQ 185 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667777778887666 88999999999999999999999887654
No 13
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=43.09 E-value=1.6e+02 Score=25.35 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhh
Q psy9762 6 VLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNF-----------LKTLSHVETKLTEQINYLTQ 65 (112)
Q Consensus 6 ~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F-----------~~sl~~VE~eLs~qI~yLsq 65 (112)
-|++.||+|..-+.-=.+-+.++++-..+....-+...++ =-.++++=.+|..||.||=.
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~ 125 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQ 125 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988899999988665554444444443 34567777899999999865
No 14
>1aep_A Apolipophorin III; lipoprotein; 2.70A {Locusta migratoria} SCOP: a.63.1.1
Probab=42.38 E-value=95 Score=22.50 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhcCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHHHHHHHHHHH-----
Q psy9762 17 CLQSAGQALLELSKEKS--SLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHR----- 89 (112)
Q Consensus 17 ~lq~Ag~~i~ELskek~--s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEgS~Y~a~kd~emA~~r----- 89 (112)
++..+-+.-..|+-+.| ....+..+++.|...|.+|-+.|...- --|.||.--....+---+..
T Consensus 18 iVNA~~ei~eTLGLPtpdealnllteqanafktkiaevttslkqea---------ekhqgsvaeqlnafarnlnnsihda 88 (161)
T 1aep_A 18 IVNAAHELHETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQEA---------EKHQGSVAEQLNAFARNLNNSIHDA 88 (161)
T ss_dssp HHHHHHHHGGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TTCCTHHHHHHHHHHHHHHHTTSSS
T ss_pred HHhhHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhcccHHHHHHHHHHHhhhhHHHH
Confidence 44444455567888887 456789999999999999999887653 35788754433332222211
Q ss_pred ---H-HHHHHHHHHHHHH
Q psy9762 90 ---S-ARQQISDVIQSEA 103 (112)
Q Consensus 90 ---v-~~~~l~~l~~~~~ 103 (112)
+ +.++|+.|+..+.
T Consensus 89 atslnlqdqlnslqsalt 106 (161)
T 1aep_A 89 ATSLNLQDQLNSLQSALT 106 (161)
T ss_dssp SCCSSHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 1 5677777776654
No 15
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=42.03 E-value=51 Score=25.71 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9762 15 ITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINY 62 (112)
Q Consensus 15 ~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~y 62 (112)
..+..-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-
T Consensus 151 ~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~ 199 (321)
T 1xvl_A 151 RNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQ 199 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777788888666 88999999999999999999999888764
No 16
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=41.39 E-value=37 Score=25.71 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYL 63 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yL 63 (112)
...+..-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-+
T Consensus 125 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~ 175 (284)
T 3cx3_A 125 PEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKA 175 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566677777888888666 899999999999999999999999987654
No 17
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=39.80 E-value=63 Score=24.95 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYL 63 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yL 63 (112)
...+.+-|..+-..|++-.| +...++.++..|.+.|+.+..++.+.+.-+
T Consensus 138 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~ 188 (312)
T 2o1e_A 138 PVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKA 188 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566667777788888666 889999999999999999999999987654
No 18
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=39.58 E-value=1.1e+02 Score=22.46 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHHHHHH
Q psy9762 5 QVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQ 84 (112)
Q Consensus 5 ~~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEgS~Y~a~kd~e 84 (112)
++||+.-.=++..|-+..-=|..||..= ...++-|+.++ ..|..+|++|+|+ +.
T Consensus 46 ~aleeTK~Ya~qsLaSVAyqIn~lA~~l--l~lLd~Q~~~l--------~~mes~v~~l~Q~----------------v~ 99 (159)
T 3p8c_F 46 RALEETKAYTTQSLASVAYLINTLANNV--LQMLDIQASQL--------RRMESSINHISQT----------------VD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------HHHHHHHHHHHHH----------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH--------HHHHHHHHHHHHH----------------HH
Confidence 3555555555555554444343333211 11223333322 3466788899996 67
Q ss_pred HHHHHHHHHHHHHH
Q psy9762 85 MAWHRSARQQISDV 98 (112)
Q Consensus 85 mA~~rv~~~~l~~l 98 (112)
|-.+|++|.++..+
T Consensus 100 ih~EKvaRreIg~l 113 (159)
T 3p8c_F 100 IHKEKVARREIGIL 113 (159)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888877654
No 19
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=37.65 E-value=68 Score=19.45 Aligned_cols=61 Identities=5% Similarity=0.018 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy9762 7 LDQIEKDIITCLQSAGQALLELSK--EKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVS 67 (112)
Q Consensus 7 L~~iEK~I~~~lq~Ag~~i~ELsk--ek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~ 67 (112)
+...-.+|-..+..-...+..|.. +.++...|...-.+|...+..+...|.+...+|.+++
T Consensus 21 ~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~A 83 (93)
T 4ioe_A 21 FKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGISTDLKRIA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666643 4467777777777777777777777777777776654
No 20
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=37.15 E-value=35 Score=26.03 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYLT 64 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLs 64 (112)
...+.+-|..+-..|++-.| +...++.++.+|.+.|+.+..++.+.+.-+.
T Consensus 127 p~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~ 178 (286)
T 3gi1_A 127 PVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVR 178 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34566677778888888666 8899999999999999999999999876543
No 21
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=35.81 E-value=44 Score=25.90 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhhcCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9762 14 IITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQINYLT 64 (112)
Q Consensus 14 I~~~lq~Ag~~i~ELskek~-s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLs 64 (112)
...+.+-|..+-..|++-.| +...++.++.+|.+.|+.+..++.+.+.-+.
T Consensus 143 p~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~ 194 (313)
T 1toa_A 143 VKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLP 194 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34566667778888888666 8999999999999999999999998876543
No 22
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=32.41 E-value=40 Score=24.19 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=25.3
Q ss_pred hccCCCCC--CCchhHHHHHHHHH--HHH--HHHHHHH-HHHHHHhhh
Q psy9762 66 VSTGQPHE--GSGYASQKVLQMAW--HRS--ARQQISD-VIQSEADYF 106 (112)
Q Consensus 66 V~tg~phE--gS~Y~a~kd~emA~--~rv--~~~~l~~-l~~~~~~~~ 106 (112)
|++|.|-. --||+..+--++-. .++ ++.||.+ |..++++..
T Consensus 4 vsC~~p~a~~pptysp~~i~~Iq~y~~~i~~ar~Rl~e~L~~lI~~~~ 51 (133)
T 3ls0_A 4 GSCSSPQVEIPTTYSPEKIAQLQVYVNPIAVARDGMEKRLQGLIADQN 51 (133)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTC
T ss_pred ccCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcc
Confidence 55666653 57899988766653 667 9999999 999998743
No 23
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=30.57 E-value=44 Score=22.67 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCcccH
Q psy9762 4 IQVLDQIEKDIITCLQSAGQALLELSKEKSSL 35 (112)
Q Consensus 4 L~~L~~iEK~I~~~lq~Ag~~i~ELskek~s~ 35 (112)
|..|+.-|+.+...++.+.+-|..|..+..+.
T Consensus 15 l~~L~~~E~~LD~~i~~~~~~l~~lted~~n~ 46 (106)
T 2aze_B 15 LRQLQESEQQLDHLMNICTTQLRLLSEDTDSQ 46 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 56789999999999999999999998775443
No 24
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.51 E-value=1.7e+02 Score=20.90 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9762 13 DIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQV 66 (112)
Q Consensus 13 ~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV 66 (112)
.+..+|..+.+-..+.-. -.+.+-..+.+|+.-++.|-.+|..||.-|-++
T Consensus 100 ~L~~~L~~~~~~~~~~l~---e~e~~leeyK~Kl~rv~~vkkeL~~hi~sLPDl 150 (152)
T 4fla_A 100 QLARMLVEYTQNQKDVLS---EKEKKLEEYKQKLARVTQVRKELKSHIQSLPDL 150 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 344455544444333322 234555677888888888888888888877553
No 25
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=26.85 E-value=20 Score=23.14 Aligned_cols=28 Identities=11% Similarity=0.076 Sum_probs=23.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhhccc
Q psy9762 82 VLQMAWHRS-ARQQISDVIQSEADYFGVD 109 (112)
Q Consensus 82 d~emA~~rv-~~~~l~~l~~~~~~~~~~~ 109 (112)
-.+++.+|+ |+.=..+|..+|++|..-|
T Consensus 30 r~el~~~RikVS~aa~~L~~Yce~~~~~D 58 (73)
T 1got_G 30 KKEVTLERMLVSKCCEEFRDYVEERSGED 58 (73)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHCCchhhHHHHHHHHHHHHHhcCCCC
Confidence 346677888 9999999999999987666
No 26
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=24.83 E-value=2.1e+02 Score=21.07 Aligned_cols=49 Identities=14% Similarity=-0.001 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hh-hccCCCCCCCchhHHHHHHHHHHHH
Q psy9762 40 SQSHNFLKTLSHVETKLTEQINYL----TQ-VSTGQPHEGSGYASQKVLQMAWHRS 90 (112)
Q Consensus 40 ~~~~~F~~sl~~VE~eLs~qI~yL----sq-V~tg~phEgS~Y~a~kd~emA~~rv 90 (112)
..-.+|-.+++-.|-.+..|-+|- -+ -..|+|||-.+ -..+++....|+
T Consensus 52 ~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~--l~~N~e~LksRL 105 (170)
T 3l4q_C 52 TAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQR--ILLNSERLKSRI 105 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSSTTT--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHH--HHHHHHHHHHHH
Confidence 334478888888888888887762 22 23799999875 345666666666
No 27
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=24.02 E-value=1.6e+02 Score=19.57 Aligned_cols=15 Identities=33% Similarity=0.251 Sum_probs=0.4
Q ss_pred cCCCCCCCchhHHHHH
Q psy9762 68 TGQPHEGSGYASQKVL 83 (112)
Q Consensus 68 tg~phEgS~Y~a~kd~ 83 (112)
.+. +.+++||+.+..
T Consensus 131 ~~~-~~~~~Y~~~G~~ 145 (157)
T 2fup_A 131 RGQ-DAPSLYDSRGGT 145 (157)
T ss_dssp C---------------
T ss_pred hCC-CCccCcCCCCCc
Confidence 454 378899987754
No 28
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=21.10 E-value=1.7e+02 Score=20.41 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHH
Q psy9762 32 KSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQ 80 (112)
Q Consensus 32 k~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEgS~Y~a~ 80 (112)
.|....+-..=.+|-..|+.|-..++.-|+-.--|.||.|+=+-.-|+.
T Consensus 85 np~V~~y~~Ae~~l~~LL~~I~~iI~~~I~~~i~v~tg~p~~~~~~~~~ 133 (151)
T 2pih_A 85 IPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSK 133 (151)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcccccCCCC
Confidence 4666666667778888999999999999999889999999865444433
No 29
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=21.03 E-value=2.2e+02 Score=19.92 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=14.2
Q ss_pred HHH--HHHHHHHHHHHHHhhh
Q psy9762 88 HRS--ARQQISDVIQSEADYF 106 (112)
Q Consensus 88 ~rv--~~~~l~~l~~~~~~~~ 106 (112)
.|+ +..||..|.+..-+|-
T Consensus 122 ~rL~~ie~RL~~l~~L~RKyg 142 (175)
T 4abx_A 122 EALDRVEARLSALSKLKNKYG 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 466 7888888888777764
No 30
>1ls4_A Apolp-III, apolipophorin-III; helix-bundle, exchangeable apolipoprotein, lipid transport; NMR {Locusta migratoria} SCOP: a.63.1.1
Probab=20.19 E-value=2.6e+02 Score=20.46 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhcCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchh
Q psy9762 16 TCLQSAGQALLELSKEKS--SLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYA 78 (112)
Q Consensus 16 ~~lq~Ag~~i~ELskek~--s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEgS~Y~ 78 (112)
+++..+-+.-..|+-+.| ....+..+++.|...|.+|-+.|... .--|.||.--
T Consensus 36 TiVNA~~ei~eTLGLPtpdealnllteqanafktkiaevttslkqe---------aekhqgsvae 91 (180)
T 1ls4_A 36 TIVNAAHELHETLGLPTPDEALNLLTEQANAFKTKIAEVTTSLKQE---------AEKHQGSVAE 91 (180)
T ss_dssp HHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH---------TTTTTHHHHH
T ss_pred HHHhhHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhcccHHH
Confidence 344445556667887777 56788999999999999999988754 3457777543
Done!