Your job contains 1 sequence.
>psy9762
MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI
NYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9762
(112 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0036811 - symbol:MED11 "Mediator complex subunit 1... 279 2.0e-24 1
MGI|MGI:1913422 - symbol:Med11 "mediator of RNA polymeras... 185 1.8e-14 1
UNIPROTKB|F1Q215 - symbol:MED11 "Uncharacterized protein"... 182 3.8e-14 1
UNIPROTKB|Q9P086 - symbol:MED11 "Mediator of RNA polymera... 182 3.8e-14 1
UNIPROTKB|F1MG57 - symbol:MED11 "Mediator of RNA polymera... 178 1.0e-13 1
UNIPROTKB|Q32L03 - symbol:MED11 "Mediator of RNA polymera... 178 1.0e-13 1
UNIPROTKB|F1RFT8 - symbol:MED11 "Uncharacterized protein"... 175 2.1e-13 1
ZFIN|ZDB-GENE-091207-2 - symbol:med11 "mediator complex s... 175 2.1e-13 1
RGD|1563202 - symbol:Med11 "mediator complex subunit 11" ... 171 5.6e-13 1
UNIPROTKB|I3L3E8 - symbol:MED11 "Mediator of RNA polymera... 102 1.1e-05 1
UNIPROTKB|I3L2Q0 - symbol:MED11 "Mediator of RNA polymera... 93 0.00010 1
>FB|FBgn0036811 [details] [associations]
symbol:MED11 "Mediator complex subunit 11" species:7227
"Drosophila melanogaster" [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0001104 "RNA
polymerase II transcription cofactor activity" evidence=IEA;IC]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0007517 "muscle organ development" evidence=IMP]
[GO:0048813 "dendrite morphogenesis" evidence=IMP]
InterPro:IPR019404 Pfam:PF10280 EMBL:AE014296 GO:GO:0048813
GO:GO:0007517 GO:GO:0016592 GO:GO:0001104 KO:K15131 CTD:400569
eggNOG:NOG298510 EMBL:AY102649 RefSeq:NP_649057.1 UniGene:Dm.14493
ProteinModelPortal:Q9VVS4 IntAct:Q9VVS4 STRING:Q9VVS4 PaxDb:Q9VVS4
EnsemblMetazoa:FBtr0075054 GeneID:40042 KEGG:dme:Dmel_CG6884
FlyBase:FBgn0036811 GeneTree:ENSGT00390000010184 InParanoid:Q9VVS4
OMA:EKDIILC OrthoDB:EOG4PNW0C PhylomeDB:Q9VVS4 GenomeRNAi:40042
NextBio:816699 Bgee:Q9VVS4 Uniprot:Q9VVS4
Length = 176
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 56/107 (52%), Positives = 73/107 (68%)
Query: 1 MERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQI 60
+++I LD+IEK+II C+QSAG FLK+LS VE+KL+EQI
Sbjct: 4 LDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLKSLSSVESKLSEQI 63
Query: 61 NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQSEADY 105
NYLTQVSTGQPHEGSGYAS KVLQMAWHR AR ++ ++ +++A +
Sbjct: 64 NYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRVRELEETKAKH 110
>MGI|MGI:1913422 [details] [associations]
symbol:Med11 "mediator of RNA polymerase II transcription,
subunit 11 homolog (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016592 "mediator
complex" evidence=ISA] InterPro:IPR019404 Pfam:PF10280
MGI:MGI:1913422 Reactome:REACT_127416 EMBL:AL596096
Reactome:REACT_27166 GO:GO:0016592 GO:GO:0001104 KO:K15131
CTD:400569 eggNOG:NOG298510 HOGENOM:HOG000006725 HOVERGEN:HBG108126
OrthoDB:EOG47WNQ5 GeneTree:ENSGT00390000010184 EMBL:AK003984
EMBL:AK008153 EMBL:CR936841 EMBL:BC025057 IPI:IPI00111353
RefSeq:NP_079673.2 UniGene:Mm.46424 ProteinModelPortal:Q9D8C6
SMR:Q9D8C6 IntAct:Q9D8C6 STRING:Q9D8C6 PaxDb:Q9D8C6 PRIDE:Q9D8C6
DNASU:66172 Ensembl:ENSMUST00000019067 GeneID:66172 KEGG:mmu:66172
UCSC:uc007juv.1 InParanoid:Q9D8C6 NextBio:320854 Bgee:Q9D8C6
Genevestigator:Q9D8C6 Uniprot:Q9D8C6
Length = 117
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 43/102 (42%), Positives = 59/102 (57%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTTSVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR +ISDV ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKISDVART 110
>UNIPROTKB|F1Q215 [details] [associations]
symbol:MED11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016592 "mediator complex" evidence=IEA]
[GO:0001104 "RNA polymerase II transcription cofactor activity"
evidence=IEA] InterPro:IPR019404 Pfam:PF10280 GO:GO:0016592
GO:GO:0001104 KO:K15131 CTD:400569 GeneTree:ENSGT00390000010184
OMA:MAWHRLE EMBL:AAEX03003593 RefSeq:XP_849319.2
ProteinModelPortal:F1Q215 Ensembl:ENSCAFT00000025184 GeneID:607526
KEGG:cfa:607526 Uniprot:F1Q215
Length = 117
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 42/102 (41%), Positives = 59/102 (57%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++SDV ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110
>UNIPROTKB|Q9P086 [details] [associations]
symbol:MED11 "Mediator of RNA polymerase II transcription
subunit 11" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR019404 Pfam:PF10280 Reactome:REACT_111045
EMBL:CH471108 GO:GO:0016592 GO:GO:0001104 KO:K15131 CTD:400569
eggNOG:NOG298510 HOGENOM:HOG000006725 HOVERGEN:HBG108126
OrthoDB:EOG47WNQ5 EMBL:AF161414 EMBL:BC070377 IPI:IPI00000305
RefSeq:NP_001001683.1 UniGene:Hs.513885 ProteinModelPortal:Q9P086
SMR:Q9P086 IntAct:Q9P086 STRING:Q9P086 DMDM:158564056 PRIDE:Q9P086
DNASU:400569 Ensembl:ENST00000293777 GeneID:400569 KEGG:hsa:400569
UCSC:uc002fyp.3 GeneCards:GC17P004634 HGNC:HGNC:32687 MIM:612383
neXtProt:NX_Q9P086 PharmGKB:PA144596413 InParanoid:Q9P086
OMA:MAWHRLE GenomeRNAi:400569 NextBio:105994 Bgee:Q9P086
CleanEx:HS_MED11 Genevestigator:Q9P086 Uniprot:Q9P086
Length = 117
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 42/102 (41%), Positives = 59/102 (57%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++SDV ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110
>UNIPROTKB|F1MG57 [details] [associations]
symbol:MED11 "Mediator of RNA polymerase II transcription
subunit 11" species:9913 "Bos taurus" [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR019404 Pfam:PF10280
GO:GO:0016592 GO:GO:0001104 IPI:IPI00714241 UniGene:Bt.22546
GeneTree:ENSGT00390000010184 OMA:MAWHRLE EMBL:DAAA02048758
Ensembl:ENSBTAT00000024370 Uniprot:F1MG57
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 41/102 (40%), Positives = 59/102 (57%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++S+V ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSEVART 110
>UNIPROTKB|Q32L03 [details] [associations]
symbol:MED11 "Mediator of RNA polymerase II transcription
subunit 11" species:9913 "Bos taurus" [GO:0016592 "mediator
complex" evidence=IEA] [GO:0001104 "RNA polymerase II transcription
cofactor activity" evidence=IEA] InterPro:IPR019404 Pfam:PF10280
GO:GO:0016592 GO:GO:0001104 KO:K15131 EMBL:BC109828 IPI:IPI00714241
RefSeq:NP_001033173.1 UniGene:Bt.22546 STRING:Q32L03 GeneID:511672
KEGG:bta:511672 CTD:400569 eggNOG:NOG298510 HOGENOM:HOG000006725
HOVERGEN:HBG108126 InParanoid:Q32L03 OrthoDB:EOG47WNQ5
NextBio:20870043 Uniprot:Q32L03
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 41/102 (40%), Positives = 59/102 (57%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++S+V ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRLDYARLKLSEVART 110
>UNIPROTKB|F1RFT8 [details] [associations]
symbol:MED11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016592 "mediator complex" evidence=IEA] [GO:0001104
"RNA polymerase II transcription cofactor activity" evidence=IEA]
InterPro:IPR019404 Pfam:PF10280 GO:GO:0016592 GO:GO:0001104
KO:K15131 CTD:400569 GeneTree:ENSGT00390000010184 OMA:MAWHRLE
EMBL:CU929524 RefSeq:NP_001231752.1 UniGene:Ssc.18018
Ensembl:ENSSSCT00000019502 GeneID:100513494 KEGG:ssc:100513494
Uniprot:F1RFT8
Length = 117
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 40/102 (39%), Positives = 59/102 (57%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
YLTQV+TGQPHEGS Y+S+K QMA R AR ++++V ++
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLNEVART 110
>ZFIN|ZDB-GENE-091207-2 [details] [associations]
symbol:med11 "mediator complex subunit 11"
species:7955 "Danio rerio" [GO:0001104 "RNA polymerase II
transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR019404 Pfam:PF10280 ZFIN:ZDB-GENE-091207-2
GO:GO:0016592 GO:GO:0001104 GeneTree:ENSGT00390000010184
EMBL:CU469521 IPI:IPI00844911 Ensembl:ENSDART00000134790
ArrayExpress:F1QM04 Uniprot:F1QM04
Length = 147
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 37/99 (37%), Positives = 60/99 (60%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
+R++ L+ +EK+I LQSAG + F +++ VE++L+ QI
Sbjct: 37 DRLRALEDVEKEIALVLQSAGTIVLELSKEKANASLLDRQLNQFQTSINRVESELSSQIR 96
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDV 98
YLTQV+TGQPHEGS Y+++K QMA +R+ AR ++ ++
Sbjct: 97 YLTQVATGQPHEGSTYSARKDCQMALNRAEYARVKLGEL 135
>RGD|1563202 [details] [associations]
symbol:Med11 "mediator complex subunit 11" species:10116 "Rattus
norvegicus" [GO:0001104 "RNA polymerase II transcription cofactor
activity" evidence=IEA] [GO:0016592 "mediator complex"
evidence=IEA;ISO] InterPro:IPR019404 Pfam:PF10280 RGD:1563202
EMBL:CH473948 GO:GO:0016592 GO:GO:0001104 KO:K15131 CTD:400569
OrthoDB:EOG47WNQ5 GeneTree:ENSGT00390000010184 IPI:IPI00364121
RefSeq:NP_001099269.1 UniGene:Rn.19345 Ensembl:ENSRNOT00000026335
GeneID:287456 KEGG:rno:287456 UCSC:RGD:1563202 NextBio:626206
Uniprot:D4ADJ7
Length = 135
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 37/88 (42%), Positives = 50/88 (56%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHR 89
YLTQV+TGQPHEGS Y+S+K QMA R
Sbjct: 69 YLTQVATGQPHEGSSYSSRKDCQMALKR 96
>UNIPROTKB|I3L3E8 [details] [associations]
symbol:MED11 "Mediator of RNA polymerase II transcription
subunit 11" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR019404 Pfam:PF10280
EMBL:AC091153 GO:GO:0016592 GO:GO:0001104 HGNC:HGNC:32687
Ensembl:ENST00000575284 Bgee:I3L3E8 Uniprot:I3L3E8
Length = 85
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQVSTGQPHEGSG 76
YLTQ+ G + SG
Sbjct: 69 YLTQLPDGLTNSNSG 83
>UNIPROTKB|I3L2Q0 [details] [associations]
symbol:MED11 "Mediator of RNA polymerase II transcription
subunit 11" species:9606 "Homo sapiens" [GO:0001104 "RNA polymerase
II transcription cofactor activity" evidence=IEA] [GO:0016592
"mediator complex" evidence=IEA] InterPro:IPR019404 Pfam:PF10280
EMBL:AC091153 GO:GO:0016592 GO:GO:0001104 HGNC:HGNC:32687
Ensembl:ENST00000573708 Bgee:I3L2Q0 Uniprot:I3L2Q0
Length = 93
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
ER++ L+ IE++I LQ+AG F ++ HVE +L+ QI
Sbjct: 9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68
Query: 62 YLTQV 66
YLTQV
Sbjct: 69 YLTQV 73
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.129 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 112 92 0.00091 102 3 11 22 0.49 29
29 0.40 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 11
No. of states in DFA: 529 (56 KB)
Total size of DFA: 102 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.65u 0.07s 9.72t Elapsed: 00:01:02
Total cpu time: 9.66u 0.07s 9.73t Elapsed: 00:01:02
Start: Thu Aug 15 13:39:07 2013 End: Thu Aug 15 13:40:09 2013