RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9762
(112 letters)
>gnl|CDD|220673 pfam10280, Med11, Mediator complex protein. Mediator is a large,
modular protein complex that is conserved from yeast to
human and conveys regulatory signals from DNA-binding
transcription factors to RNA polymerase II. Not only
are the polypeptides conserved but the structural
organisation is also largely conserved. One or two
subunits are either fungal or vertebral specific but
Med11 is one of the subunits that is conserved from
fungi to humans. Med11 appears to be necessary for the
full and successful assembly of the core head
sub-region.
Length = 113
Score = 94.3 bits (235), Expect = 2e-26
Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 3/91 (3%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKS---SLKQAESQSHNFLKTLSHVETKLTE 58
ER+Q L++I+K I++ LQSAGQ + ELSKEKS S +Q ES + F KTLS VET+L +
Sbjct: 3 ERLQSLNEIDKKIVSLLQSAGQVIEELSKEKSGESSKEQFESHTKEFYKTLSSVETELRK 62
Query: 59 QINYLTQVSTGQPHEGSGYASQKVLQMAWHR 89
QI YL +V GQPHEGSGY + + Q+
Sbjct: 63 QIKYLDEVIGGQPHEGSGYGALPINQLNQKA 93
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 29.8 bits (67), Expect = 0.28
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
E Q+ +++EK++ L ++L + + LK+ E NFLK LS E +L E++
Sbjct: 380 EARQIEEELEKEV-EKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLK 438
>gnl|CDD|219290 pfam07084, Spot_14, Thyroid hormone-inducible hepatic protein Spot
14. This family consists of several thyroid
hormone-inducible hepatic protein (Spot 14 or S14)
sequences. Mainly expressed in tissues that synthesise
triglycerides, the mRNA coding for Spot 14 has been
shown to be increased in rat liver by insulin, dietary
carbohydrates, glucose in hepatocyte culture medium, as
well as thyroid hormone. In contrast, dietary fats and
polyunsaturated fatty acids, have been shown to decrease
the amount of Spot 14 mRNA, while an elevated level of
cAMP acts as a dominant negative factor. In addition,
liver-specific factors or chromatin organisation of the
gene have been shown to contribute to the regulation of
its expression. Spot 14 protein is thought to be
required for induction of hepatic lipogenesis.
Length = 160
Score = 28.6 bits (64), Expect = 0.53
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 26 LELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLT 64
E +E+ E+Q H LK L V +KLT + N LT
Sbjct: 108 EEAEEEELGELDLEAQFHYHLKGLHTVLSKLTRKANELT 146
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 277
Score = 28.3 bits (63), Expect = 0.72
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 20 SAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETK 55
SA Q L L SL E + NFL+ LS V T+
Sbjct: 79 SANQVLFHLEGPARSLLTGERSALNFLQLLSGVATR 114
>gnl|CDD|238828 cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs)
with group II intron origin. RT transcribes DNA using
RNA as template. Proteins in this subfamily are found in
bacterial and mitochondrial group II introns. Their most
probable ancestor was a retrotransposable element with
both gag-like and pol-like genes. This subfamily of
proteins appears to have captured the RT sequences from
transposable elements, which lack long terminal repeats
(LTRs).
Length = 226
Score = 27.9 bits (63), Expect = 0.87
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 8 DQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFL 46
++I++ I L+ G LEL+ EK+ + +S+ +FL
Sbjct: 187 EEIKELIREFLEELG---LELNPEKTRITHFKSEGFDFL 222
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase.
Length = 335
Score = 26.7 bits (59), Expect = 2.9
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 5 QVLDQ-IEKDIITCLQSAGQALLELSKEKSSL--KQAESQS 42
Q+++ I ++I+ LQ G+ EL +E+ + K +S+S
Sbjct: 71 QIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKS 111
>gnl|CDD|117022 pfam08445, FR47, FR47-like protein. The members of this family
are similar to the C-terminal region of the D.
melanogaster hypothetical protein FR47. This protein
has been found to consist of two N-acyltransferase-like
domains swapped with the C-terminal strands.
Length = 86
Score = 25.4 bits (56), Expect = 3.6
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 56 LTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQIS 96
L L + T H G S+ V +A + R
Sbjct: 17 LRLPGGELGALQTLPEHRRRGLGSRLVAALARGIAERGITP 57
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 25.8 bits (57), Expect = 4.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 27 ELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYAS 79
EL +E Q S L++L KL E+I YL P S ++
Sbjct: 97 ELEEELRKQNQTISSLRRELESLKADNIKLYEKIRYLQSYQGNSPPSDSAVSN 149
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase;
Validated.
Length = 296
Score = 25.8 bits (57), Expect = 4.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 21 AGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVST 68
A Q L EL+ L E + NF++TLS V T++ + L +T
Sbjct: 99 ANQTLFELTGPARVLLTGERTALNFVQTLSGVATEVRRYVELLAGTNT 146
>gnl|CDD|188995 cd06456, M3A_DCP, Peptidase family M3 dipeptidyl carboxypeptidase
(DCP). Peptidase family M3 dipeptidyl carboxypeptidase
(DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This
metal-binding M3A family also includes oligopeptidase A
(OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off
the C-termini of various peptides and proteins, the
smallest substrate being N-blocked tripeptides and
unblocked tetrapeptides. DCP from E. coli is inhibited
by the anti-hypertensive drug captopril, an inhibitor of
the mammalian angiotensin converting enzyme (ACE, also
called peptidyl dipeptidase A). Oligopeptidase A (OpdA)
may play a specific role in the degradation of signal
peptides after they are released from precursor forms of
secreted proteins. It can also cleave N-acetyl-L-Ala.
Length = 654
Score = 25.9 bits (58), Expect = 5.9
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 85 MAWHRSARQQISDVIQSEAD 104
MA H + DV+ E +
Sbjct: 535 MALHSLYDPEAGDVVAFELE 554
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme
metabolism].
Length = 280
Score = 25.6 bits (57), Expect = 6.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 21 AGQALLELSKEKSSLKQAESQSHNFLKTLSHVETK 55
G L E+ +L AE + NFL+ LS + T
Sbjct: 78 PGDVLAEIEGPARALLTAERTALNFLQHLSGIATA 112
>gnl|CDD|131935 TIGR02889, spore_YpeB, germination protein YpeB. Members of this
family are YpeB, a protein usually encoded with the
putative spore-cortex-lytic enzyme SleB and required,
together with SleB, for normal germination. This family
is retricted to endospore-forming species in the
Firmicutes lineage of bacteria, and found in all such
species to date except Clostridium perfringens. The
matching phenotypes of mutants in SleB (called a lytic
transglycosylase) and YpeB suggests that YpeB is
necessary to allow SleB to function [Cellular processes,
Sporulation and germination].
Length = 435
Score = 25.8 bits (57), Expect = 6.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 27 ELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINY 62
+SK K SL +A +++ FL+ + + + TE Y
Sbjct: 283 PVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKY 318
>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit
(mitochondrial oligomycin sensitivity protein) [Energy
production and conversion].
Length = 178
Score = 25.3 bits (56), Expect = 7.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 19 QSAGQALLELSKEKSSLKQAESQSHNFLKTLSH 51
+ +AL EL++EK L++ E + + L +
Sbjct: 9 RRYAKALFELAEEKGQLEEVEEELTFLAEILKN 41
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 25.2 bits (55), Expect = 9.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 65 QVSTGQPHEGSGYASQKVLQMAWHRS 90
++S A LQMA+HRS
Sbjct: 334 ELSPRPDGSPEDVAKFPFLQMAFHRS 359
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.125 0.334
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,124,253
Number of extensions: 389101
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 37
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)