RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9762
(112 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.068
Identities = 6/17 (35%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
Query: 31 EKSSLKQAESQSHNFLK 47
EK +LK+ ++ LK
Sbjct: 18 EKQALKKLQAS----LK 30
Score = 26.1 bits (56), Expect = 2.2
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 13/43 (30%)
Query: 11 EKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVE 53
EK Q+ L K ++SLK S L + +E
Sbjct: 18 EK------QA-------LKKLQASLKLYADDSAPALAIKATME 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.075
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 12 KDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQP 71
D+I + + + L EL + ++ +Q N L+ L + + YL + P
Sbjct: 185 GDLI---KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD--YLLSIPISCP 239
Query: 72 HEGSGYASQKVLQMA 86
G V+Q+A
Sbjct: 240 --LIG-----VIQLA 247
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside
hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A*
2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Length = 377
Score = 26.5 bits (58), Expect = 1.9
Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 2/70 (2%)
Query: 25 LLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQK--V 82
E + ++ + A +F + L E I +L +S S +
Sbjct: 54 CYEYTGDEQYREGAVRTVASFRERLDRFENLDHHNIGFLYSLSAKAQWIVEKDESARKLA 113
Query: 83 LQMAWHRSAR 92
L A R
Sbjct: 114 LDAADVLMRR 123
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.9 bits (56), Expect = 3.2
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLE---------LSKEKSSLKQAESQSHNFLK 47
+R+Q LD K + + + LE + K K + + A+ F +
Sbjct: 96 KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA---FYQ 147
>3ont_A SPOT 14 protein; alpha-helical, helical bundle, unknown function;
2.65A {Mus musculus}
Length = 152
Score = 25.5 bits (55), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 39 ESQSHNFLKTLSHVETKLTEQINYLTQ 65
E+Q H +L H+ T LT + +T+
Sbjct: 116 EAQFHLHFCSLHHILTHLTRKAQEVTR 142
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 25.5 bits (55), Expect = 4.7
Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 3/75 (4%)
Query: 2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVET---KLTE 58
+ L I + + Q +LE + FL L
Sbjct: 98 QFTDALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLIN 157
Query: 59 QINYLTQVSTGQPHE 73
Q + ST H
Sbjct: 158 QHTLIFDGSTNPAHP 172
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral
protein-prote complex; 1.50A {Dengue virus 2} SCOP:
b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Length = 185
Score = 25.3 bits (55), Expect = 4.9
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 69 GQPHEGSGYASQKVLQMAWH 88
G G+G + WH
Sbjct: 32 GYSQIGAGVYKEGTFHTMWH 51
>3u1j_B Serine protease NS3; serine protease, ER MEM hydrolase-hydrolase
inhibitor complex; 1.80A {Dengue virus 3} PDB: 3u1i_B
Length = 191
Score = 25.3 bits (55), Expect = 5.0
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 69 GQPHEGSGYASQKVLQMAWH 88
G+ G G + V WH
Sbjct: 41 GKTQVGVGVQKEGVFHTMWH 60
>2fp7_B Serine protease NS3; flavivirus, NS3 protease, NS2B cofactor;
HET: OAR; 1.68A {West nile virus} SCOP: b.47.1.3
Length = 172
Score = 24.9 bits (54), Expect = 6.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 69 GQPHEGSGYASQKVLQMAWH 88
G G+G + V WH
Sbjct: 17 GSYQAGAGVMVEGVFHTLWH 36
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 25.1 bits (54), Expect = 6.4
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 4 IQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETK---LTEQI 60
+QVL ++ + + Q ++E ++ + FL L Q
Sbjct: 122 LQVLIKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQH 181
Query: 61 NYLTQVSTGQPHE 73
L T H
Sbjct: 182 TLLFGGDTNPVHP 194
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 25.1 bits (54), Expect = 6.4
Identities = 7/73 (9%), Positives = 20/73 (27%)
Query: 1 MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
+ + +I + + Q ++E + FL + +
Sbjct: 107 YDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLL 166
Query: 61 NYLTQVSTGQPHE 73
N + + G+
Sbjct: 167 NQHSLLFGGKGKG 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.334
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,484,880
Number of extensions: 67410
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 25
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)