RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9762
         (112 letters)



>d2fomb1 b.47.1.3 (B:18-167) NS3 protease {Dengue virus type 2
          [TaxId: 11060]}
          Length = 150

 Score = 23.1 bits (50), Expect = 7.8
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 69 GQPHEGSGYASQKVLQMAWH 88
          G    G+G   +      WH
Sbjct: 15 GYSQIGAGVYKEGTFHTMWH 34


>d2fp7b1 b.47.1.3 (B:19-170) NS3 protease {West nile virus [TaxId:
          11082]}
          Length = 152

 Score = 23.1 bits (50), Expect = 8.8
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 69 GQPHEGSGYASQKVLQMAWH 88
          G    G+G   + V    WH
Sbjct: 14 GSYQAGAGVMVEGVFHTLWH 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.125    0.334 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 351,056
Number of extensions: 11949
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 8
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)