RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9766
(97 letters)
>3zxc_A Single insulin-like growth factor-binding domain protein-1;
signaling, IGFBP, single insulin-binding domain; 1.40A
{Cupiennius salei} PDB: 3zxb_A
Length = 77
Score = 53.1 bits (127), Expect = 4e-11
Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 24 CNPAECETLTDDDCPDRAGTVWDPCGCCKVCARAENQPCGGPYGFFGSCAHDLECVVTDV 83
C P C C GT D C CC VC + CGGP FG CA CV
Sbjct: 6 CRPELCGDPGY--CE--YGTTKDACDCCPVCFQGPGGYCGGPEDVFGICADGFACVPLVG 61
Query: 84 TNENSGGVCTQ 94
++ +
Sbjct: 62 ERDSQDPIVGT 72
>3tjq_A Serine protease HTRA1; hydrolase; 2.00A {Homo sapiens}
Length = 140
Score = 40.3 bits (93), Expect = 1e-05
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 23 VCNPAECETLTDDDCPDRAGTVWDPCGCCKVCARAENQPCGGPYGFFGSCAH 74
C PA C + C G D CGCC+VC E CG G G
Sbjct: 22 RCEPARCPPQPEH-CE--GGRARDACGCCEVCGAPEGAACGLQEGPCGEGLQ 70
>2dsp_B Insulin-like growth factor-binding protein 4; IGF, IGFBP, protein
binding/hormone/growth factor complex; 2.50A {Homo
sapiens} SCOP: g.3.9.1 PDB: 2dsq_B
Length = 92
Score = 29.3 bits (65), Expect = 0.088
Identities = 12/40 (30%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 41 AGTVWDPCGCCKVCARAENQPCGGPYGFFGSCAHDLECVV 80
CGCC CA PCG C L C
Sbjct: 25 ELVREPGCGCCATCALGLGMPCGVYT---PRCGSGLRCYP 61
>1wqj_B Insulin-like growth factor binding protein 4; protein-protein
complex, disulfide rich, disulfide bond ladder, protein
binding/hormone/growth factor complex; 1.60A {Homo
sapiens} SCOP: g.3.9.1 PDB: 2dsr_B
Length = 80
Score = 28.4 bits (63), Expect = 0.16
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 3/35 (8%)
Query: 46 DPCGCCKVCARAENQPCGGPYGFFGSCAHDLECVV 80
CGCC CA PCG + C L C
Sbjct: 28 PGCGCCATCALGLGMPCG---VYTPRCGSGLRCYP 59
>3sqg_A Methyl coenzyme M reductase, alpha subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 579
Score = 25.6 bits (56), Expect = 3.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 55 ARAENQPCGGPYGFFGSC 72
AR+ N+P G P G
Sbjct: 286 ARSHNEPGGMPLGINADS 303
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 25.6 bits (57), Expect = 3.2
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 47 PCGCCKVCARAENQPCGGPYGFF 69
P R +Q GG +
Sbjct: 88 PDWRTSEVQRGYHQHSGGMLAGW 110
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase,
metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Length = 295
Score = 25.3 bits (56), Expect = 3.6
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 3 RSVFWIFLSYCLGRSIA 19
IF+ G S++
Sbjct: 91 NGFIKIFMEQVPGGSLS 107
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
3spw_A* 1zi7_A
Length = 438
Score = 25.3 bits (55), Expect = 4.0
Identities = 2/26 (7%), Positives = 9/26 (34%)
Query: 65 PYGFFGSCAHDLECVVTDVTNENSGG 90
G+F + + + + ++
Sbjct: 239 GRGYFSGKKNSFKARIYKDSKDSKDK 264
>1e6y_A Methyl-coenzyme M reductase subunit alpha; biological
methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET:
MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP:
a.89.1.1 d.58.31.2
Length = 569
Score = 24.9 bits (54), Expect = 5.0
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 55 ARAENQPCGGPYGFFGSC 72
AR N+P G +G
Sbjct: 285 ARGPNEPGGLSFGHLSDI 302
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A*
3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Length = 549
Score = 24.8 bits (54), Expect = 5.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 55 ARAENQPCGGPYGFFGSC 72
AR EN+P G P+G+
Sbjct: 271 ARGENEPGGVPFGYLADI 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.8 bits (53), Expect = 5.6
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 5 VFWIFLSYC 13
+FW+ L C
Sbjct: 184 IFWLNLKNC 192
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 24.8 bits (55), Expect = 5.8
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 34 DDDCPDRAGTVWDPCGCCKV 53
+ C + + W G C V
Sbjct: 447 ETFCRESVASYWHYHGGCLV 466
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 24.8 bits (55), Expect = 5.9
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 39 DRAGTVW--DPCGCCKVCARAENQPC 62
DR G W CG C C + C
Sbjct: 81 DRVGIPWLYSACGHCDYCLSGQETLC 106
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein
serine/threonine kinase, S based drug design, MAP3K14,
transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A*
4g3c_A 4dn5_A*
Length = 336
Score = 24.7 bits (54), Expect = 6.4
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 3 RSVFWIFLSYCLGRSIA 19
IF+ G S+
Sbjct: 122 GPWVNIFMELLEGGSLG 138
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 24.7 bits (53), Expect = 6.7
Identities = 6/56 (10%), Positives = 12/56 (21%)
Query: 4 SVFWIFLSYCLGRSIAFSCVCNPAECETLTDDDCPDRAGTVWDPCGCCKVCARAEN 59
+ W+ + C+ +C C C + N
Sbjct: 45 NHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGLMSTN 100
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 24.4 bits (54), Expect = 6.9
Identities = 8/26 (30%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 39 DRAGTVW--DPCGCCKVCARAENQPC 62
D AG W C C+ C C
Sbjct: 86 DYAGIKWLNGSCMACEYCELGNESNC 111
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 24.4 bits (54), Expect = 7.0
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 39 DRAGTVW--DPCGCCKVCARAENQPC 62
DR G W CG C+ C + C
Sbjct: 83 DRVGVPWLYSACGYCEHCLQGWETLC 108
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 24.1 bits (53), Expect = 8.5
Identities = 8/25 (32%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 39 DRAGTVWDP-CGCCKVCARAENQPC 62
D CG C CAR C
Sbjct: 82 DAVAVYGPWGCGACHACARGRENYC 106
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase,
glucosylceramide, hydrolysis, disease, hydrolase; HET:
NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB:
1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A*
3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A*
2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ...
Length = 497
Score = 24.2 bits (51), Expect = 8.8
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 13 CLGRSIAFS---CVCNPAECETLTDDDCPDRAGTVW 45
C+ +S +S CVCN C++ P
Sbjct: 4 CIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSR 39
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2
PDB: 1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 24.3 bits (52), Expect = 9.2
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 3/51 (5%)
Query: 44 VWDPCGCCKVCARAENQPCGGPYGFFGSCAHDLECVVTDVTNENSGGVCTQ 94
VW C + A PC P + C ++ CT
Sbjct: 35 VWSTCDGGQPPA---EIPCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTA 82
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 24.2 bits (53), Expect = 9.6
Identities = 6/25 (24%), Positives = 7/25 (28%), Gaps = 1/25 (4%)
Query: 39 DRAGTVW-DPCGCCKVCARAENQPC 62
D G C C E+ C
Sbjct: 99 DPVILHPAVTDGTCLACRAGEDMHC 123
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.513
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,512,947
Number of extensions: 80313
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 99
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.5 bits)