Query psy9768
Match_columns 406
No_of_seqs 178 out of 564
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:03:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2688|consensus 100.0 1.4E-79 3.1E-84 605.6 32.8 390 5-402 1-394 (394)
2 COG5600 Transcription-associat 100.0 1.9E-63 4.1E-68 480.7 29.0 393 5-400 1-411 (413)
3 KOG2581|consensus 100.0 1.1E-30 2.5E-35 255.0 19.3 213 169-392 205-422 (493)
4 KOG1464|consensus 99.8 1.5E-17 3.2E-22 156.7 17.6 237 143-394 162-411 (440)
5 PF01399 PCI: PCI domain; Int 99.6 3.5E-14 7.6E-19 116.9 14.0 103 282-392 2-105 (105)
6 KOG1463|consensus 99.0 1.5E-07 3.3E-12 91.7 21.6 211 172-393 167-391 (411)
7 KOG2908|consensus 98.7 8.2E-06 1.8E-10 79.8 22.7 216 170-395 112-342 (380)
8 COG5159 RPN6 26S proteasome re 98.4 0.00031 6.7E-09 67.7 24.4 211 170-392 162-388 (421)
9 smart00088 PINT motif in prote 98.1 1.8E-05 4E-10 63.2 8.3 67 317-395 6-72 (88)
10 smart00753 PAM PCI/PINT associ 98.1 1.8E-05 4E-10 63.2 8.3 67 317-395 6-72 (88)
11 KOG2582|consensus 97.8 0.00064 1.4E-08 67.4 15.1 204 177-397 144-364 (422)
12 PF10255 Paf67: RNA polymerase 97.3 0.052 1.1E-06 55.6 22.0 192 165-372 115-346 (404)
13 KOG2753|consensus 96.9 0.0052 1.1E-07 60.3 8.8 110 269-393 229-340 (378)
14 PF07719 TPR_2: Tetratricopept 95.7 0.015 3.3E-07 37.1 3.6 32 215-246 2-33 (34)
15 KOG1497|consensus 95.2 0.5 1.1E-05 46.7 13.6 207 173-399 144-369 (399)
16 KOG0687|consensus 95.2 0.62 1.4E-05 46.2 14.2 198 180-391 148-361 (393)
17 COG5187 RPN7 26S proteasome re 95.1 0.6 1.3E-05 45.7 13.6 208 166-390 148-374 (412)
18 KOG2758|consensus 94.9 0.14 3E-06 50.6 8.8 99 285-395 293-397 (432)
19 KOG0686|consensus 94.8 0.72 1.6E-05 47.0 13.7 190 186-390 200-408 (466)
20 PF14938 SNAP: Soluble NSF att 94.7 2.1 4.5E-05 41.6 16.7 131 142-306 131-261 (282)
21 PF13371 TPR_9: Tetratricopept 94.4 0.1 2.2E-06 39.3 5.4 63 179-248 1-63 (73)
22 PF13432 TPR_16: Tetratricopep 93.9 0.18 3.9E-06 37.1 5.7 61 180-247 4-64 (65)
23 PF00515 TPR_1: Tetratricopept 92.5 0.2 4.2E-06 32.0 3.5 31 216-246 3-33 (34)
24 PF04733 Coatomer_E: Coatomer 90.7 0.93 2E-05 44.5 7.8 126 171-304 129-288 (290)
25 PF13424 TPR_12: Tetratricopep 90.3 0.76 1.7E-05 35.0 5.5 71 172-244 4-76 (78)
26 KOG1498|consensus 89.2 12 0.00027 38.1 14.2 204 180-392 178-398 (439)
27 cd00189 TPR Tetratricopeptide 89.2 2.2 4.8E-05 31.2 7.3 64 175-245 36-99 (100)
28 TIGR02552 LcrH_SycD type III s 88.8 2.4 5.3E-05 35.4 8.0 67 176-249 54-120 (135)
29 cd00189 TPR Tetratricopeptide 88.1 3.3 7.2E-05 30.2 7.7 64 178-248 5-68 (100)
30 PF12895 Apc3: Anaphase-promot 87.9 0.87 1.9E-05 35.4 4.3 54 179-240 31-84 (84)
31 PF13174 TPR_6: Tetratricopept 87.8 0.7 1.5E-05 28.8 3.1 31 217-247 3-33 (33)
32 PF13414 TPR_11: TPR repeat; P 87.7 2.4 5.1E-05 31.3 6.5 61 177-245 7-69 (69)
33 PRK15359 type III secretion sy 87.6 3.6 7.8E-05 35.7 8.5 78 175-259 60-139 (144)
34 PF13181 TPR_8: Tetratricopept 87.4 0.96 2.1E-05 28.6 3.6 30 216-245 3-32 (34)
35 PF13414 TPR_11: TPR repeat; P 85.7 1.8 3.8E-05 32.0 4.8 34 215-248 4-37 (69)
36 PF03399 SAC3_GANP: SAC3/GANP/ 83.0 12 0.00026 34.0 10.1 134 213-352 55-203 (204)
37 PF09012 FeoC: FeoC like trans 82.5 2.1 4.5E-05 32.5 4.0 38 339-382 12-49 (69)
38 PRK10866 outer membrane biogen 81.3 21 0.00046 33.9 11.4 135 181-325 40-202 (243)
39 KOG1076|consensus 81.0 86 0.0019 34.6 16.4 215 166-395 483-766 (843)
40 PF13428 TPR_14: Tetratricopep 79.7 2.4 5.3E-05 28.8 3.2 32 217-248 4-35 (44)
41 KOG2300|consensus 79.4 66 0.0014 34.0 14.5 134 169-304 400-552 (629)
42 PF09976 TPR_21: Tetratricopep 76.6 47 0.001 28.4 13.2 82 142-241 64-145 (145)
43 PF13176 TPR_7: Tetratricopept 76.1 3.8 8.3E-05 26.6 3.2 29 218-246 3-31 (36)
44 smart00028 TPR Tetratricopepti 75.6 3.4 7.3E-05 23.9 2.7 30 216-245 3-32 (34)
45 PRK02603 photosystem I assembl 75.3 17 0.00037 32.2 8.3 74 169-247 31-105 (172)
46 PF13424 TPR_12: Tetratricopep 74.8 7.4 0.00016 29.3 5.0 34 212-245 3-36 (78)
47 TIGR02795 tol_pal_ybgF tol-pal 69.3 15 0.00032 29.4 6.0 67 177-248 43-110 (119)
48 KOG0543|consensus 68.7 40 0.00086 34.6 9.8 101 140-248 222-325 (397)
49 TIGR03302 OM_YfiO outer membra 67.9 36 0.00078 31.3 9.0 67 177-248 37-104 (235)
50 PF10075 PCI_Csn8: COP9 signal 66.0 23 0.0005 30.6 6.8 79 281-371 42-121 (143)
51 PRK11788 tetratricopeptide rep 63.7 34 0.00074 33.9 8.5 71 175-247 143-213 (389)
52 COG5071 RPN5 26S proteasome re 63.3 1.7E+02 0.0036 29.3 16.3 95 173-268 131-225 (439)
53 PF14559 TPR_19: Tetratricopep 63.3 8.1 0.00018 28.1 3.0 57 184-247 2-58 (68)
54 TIGR02521 type_IV_pilW type IV 62.1 49 0.0011 29.1 8.5 68 175-247 101-168 (234)
55 PF10602 RPN7: 26S proteasome 61.8 47 0.001 30.0 8.2 91 142-243 52-142 (177)
56 TIGR02521 type_IV_pilW type IV 61.5 66 0.0014 28.2 9.2 68 173-247 31-98 (234)
57 PF13374 TPR_10: Tetratricopep 61.2 10 0.00023 24.4 2.9 30 217-246 5-34 (42)
58 TIGR02795 tol_pal_ybgF tol-pal 60.1 39 0.00086 26.8 6.9 66 178-247 7-72 (119)
59 TIGR02552 LcrH_SycD type III s 59.0 69 0.0015 26.4 8.4 65 176-247 20-84 (135)
60 PF13429 TPR_15: Tetratricopep 58.4 25 0.00055 33.5 6.2 67 177-248 114-180 (280)
61 KOG2002|consensus 57.7 2.3E+02 0.005 32.5 13.8 159 52-247 157-340 (1018)
62 PRK11189 lipoprotein NlpI; Pro 56.8 17 0.00037 35.5 4.8 45 214-258 236-280 (296)
63 PRK11788 tetratricopeptide rep 56.2 50 0.0011 32.7 8.2 67 176-245 72-138 (389)
64 KOG2300|consensus 56.0 2.8E+02 0.0061 29.6 15.6 135 210-349 363-528 (629)
65 TIGR03302 OM_YfiO outer membra 55.4 1.7E+02 0.0036 26.8 16.1 32 216-247 168-199 (235)
66 KOG4234|consensus 54.3 22 0.00047 33.4 4.6 31 220-250 101-131 (271)
67 PF14853 Fis1_TPR_C: Fis1 C-te 54.1 19 0.00042 26.0 3.5 32 216-247 3-34 (53)
68 PF08631 SPO22: Meiosis protei 54.1 40 0.00087 32.6 6.9 85 184-268 4-99 (278)
69 PRK10370 formate-dependent nit 53.4 57 0.0012 29.9 7.4 78 171-248 14-107 (198)
70 PLN03088 SGT1, suppressor of 52.5 71 0.0015 32.2 8.6 64 177-248 40-104 (356)
71 PRK10049 pgaA outer membrane p 52.2 2.8E+02 0.006 31.0 13.9 125 176-305 313-453 (765)
72 TIGR02917 PEP_TPR_lipo putativ 52.1 3.4E+02 0.0074 29.4 17.7 65 176-247 672-736 (899)
73 TIGR01716 RGG_Cterm transcript 51.2 1.9E+02 0.0042 26.3 14.8 77 167-245 123-199 (220)
74 PF09295 ChAPs: ChAPs (Chs5p-A 50.4 71 0.0015 32.9 8.2 95 143-263 217-312 (395)
75 COG4105 ComL DNA uptake lipopr 50.2 95 0.0021 30.0 8.4 131 214-356 34-219 (254)
76 PRK15363 pathogenicity island 49.6 36 0.00077 30.4 5.1 45 215-259 104-150 (157)
77 PRK10803 tol-pal system protei 49.1 40 0.00087 32.6 5.9 61 183-248 153-214 (263)
78 PF02064 MAS20: MAS20 protein 49.0 33 0.00071 29.3 4.6 28 219-246 68-95 (121)
79 PRK02603 photosystem I assembl 48.7 46 0.001 29.3 5.9 39 208-246 29-67 (172)
80 CHL00033 ycf3 photosystem I as 47.3 55 0.0012 28.6 6.2 69 175-243 74-142 (168)
81 PF12569 NARP1: NMDA receptor- 46.2 1.3E+02 0.0028 32.1 9.7 68 171-246 192-260 (517)
82 PF13812 PPR_3: Pentatricopept 45.8 36 0.00077 20.8 3.5 28 175-202 3-30 (34)
83 PRK14574 hmsH outer membrane p 45.6 5.1E+02 0.011 29.5 15.2 132 176-314 370-519 (822)
84 TIGR02917 PEP_TPR_lipo putativ 45.5 1.6E+02 0.0034 32.1 10.6 63 178-247 164-226 (899)
85 PF10300 DUF3808: Protein of u 45.1 40 0.00087 35.4 5.6 76 186-270 246-322 (468)
86 KOG1585|consensus 45.1 3E+02 0.0066 26.8 15.5 209 52-305 23-253 (308)
87 PF09976 TPR_21: Tetratricopep 44.4 58 0.0012 27.8 5.7 52 217-270 51-102 (145)
88 PRK15359 type III secretion sy 44.0 1.2E+02 0.0026 26.0 7.6 62 179-248 30-92 (144)
89 PRK10866 outer membrane biogen 43.3 2.9E+02 0.0064 26.1 15.0 56 211-268 172-227 (243)
90 PF13432 TPR_16: Tetratricopep 43.2 29 0.00063 24.9 3.1 30 218-247 1-30 (65)
91 PF09756 DDRGK: DDRGK domain; 43.1 59 0.0013 30.0 5.6 47 340-392 112-158 (188)
92 COG1522 Lrp Transcriptional re 43.0 44 0.00095 28.8 4.7 42 338-385 19-60 (154)
93 PF10516 SHNi-TPR: SHNi-TPR; 42.6 31 0.00067 23.1 2.8 24 220-243 7-30 (38)
94 PRK11447 cellulose synthase su 42.2 2.2E+02 0.0048 33.4 11.6 69 173-248 351-419 (1157)
95 PF04190 DUF410: Protein of un 40.6 1.9E+02 0.004 27.9 9.0 47 279-325 190-238 (260)
96 PF13041 PPR_2: PPR repeat fam 39.9 59 0.0013 22.3 4.1 31 174-204 4-34 (50)
97 PRK15331 chaperone protein Sic 39.9 42 0.0009 30.3 4.1 37 217-253 108-144 (165)
98 PF07721 TPR_4: Tetratricopept 39.8 24 0.00052 21.1 1.8 23 216-238 3-25 (26)
99 TIGR00990 3a0801s09 mitochondr 39.7 1.1E+02 0.0024 33.0 8.1 33 215-247 400-432 (615)
100 PF02847 MA3: MA3 domain; Int 39.3 92 0.002 25.3 5.9 93 283-377 6-112 (113)
101 PF08672 APC2: Anaphase promot 38.7 48 0.001 24.6 3.6 38 341-378 11-52 (60)
102 PRK11169 leucine-responsive tr 37.9 77 0.0017 28.1 5.5 39 338-382 25-63 (164)
103 KOG1156|consensus 37.3 90 0.002 34.0 6.6 76 171-246 318-403 (700)
104 PRK10370 formate-dependent nit 36.1 1.9E+02 0.0041 26.4 8.0 60 182-248 117-178 (198)
105 PF14559 TPR_19: Tetratricopep 36.1 65 0.0014 23.1 4.1 24 225-248 2-25 (68)
106 TIGR00990 3a0801s09 mitochondr 35.9 1E+02 0.0023 33.2 7.2 30 217-246 470-499 (615)
107 COG1729 Uncharacterized protei 35.6 74 0.0016 30.9 5.3 68 175-248 144-212 (262)
108 KOG0889|consensus 35.2 5.4E+02 0.012 34.0 13.4 119 99-245 2725-2843(3550)
109 PF14938 SNAP: Soluble NSF att 34.9 4.2E+02 0.009 25.4 11.9 76 173-269 94-171 (282)
110 PRK11189 lipoprotein NlpI; Pro 34.8 2.3E+02 0.0049 27.5 8.8 61 180-248 71-132 (296)
111 cd05804 StaR_like StaR_like; a 33.9 2.6E+02 0.0057 27.1 9.2 69 171-246 112-180 (355)
112 PF10607 CLTH: CTLH/CRA C-term 33.7 1.5E+02 0.0032 25.2 6.6 49 282-331 4-52 (145)
113 KOG1173|consensus 33.5 52 0.0011 35.2 4.1 75 183-269 390-464 (611)
114 PRK10803 tol-pal system protei 33.4 1.2E+02 0.0027 29.2 6.6 65 179-248 186-251 (263)
115 KOG4056|consensus 33.3 44 0.00096 29.2 3.0 29 220-248 87-115 (143)
116 PF10602 RPN7: 26S proteasome 33.2 3E+02 0.0065 24.7 8.7 50 216-267 38-87 (177)
117 PRK11179 DNA-binding transcrip 33.1 76 0.0016 27.7 4.7 38 338-381 20-57 (153)
118 PRK12370 invasion protein regu 32.4 1.7E+02 0.0037 31.2 8.1 61 180-248 345-406 (553)
119 PF07219 HemY_N: HemY protein 32.2 59 0.0013 26.8 3.6 33 211-243 56-88 (108)
120 COG3063 PilF Tfp pilus assembl 32.2 3E+02 0.0065 26.4 8.6 92 148-248 11-103 (250)
121 PF01535 PPR: PPR repeat; Int 31.9 51 0.0011 19.5 2.5 27 175-201 2-28 (31)
122 PRK09782 bacteriophage N4 rece 31.2 1E+02 0.0023 35.6 6.5 87 212-308 42-134 (987)
123 COG3071 HemY Uncharacterized e 30.8 3E+02 0.0065 28.3 8.8 112 220-335 90-241 (400)
124 PF07729 FCD: FCD domain; Int 30.6 2.7E+02 0.0058 21.9 8.5 25 281-305 98-122 (125)
125 PF08544 GHMP_kinases_C: GHMP 30.2 1.5E+02 0.0032 22.4 5.4 23 286-308 1-23 (85)
126 PLN03088 SGT1, suppressor of 30.0 2E+02 0.0043 28.9 7.6 60 181-248 10-70 (356)
127 TIGR00540 hemY_coli hemY prote 30.0 75 0.0016 32.4 4.7 38 209-246 330-369 (409)
128 KOG3081|consensus 29.4 1E+02 0.0022 30.2 5.1 98 168-270 132-258 (299)
129 CHL00033 ycf3 photosystem I as 29.3 3.8E+02 0.0081 23.2 9.2 70 172-246 34-104 (168)
130 COG3071 HemY Uncharacterized e 29.2 47 0.001 33.9 2.9 34 215-248 329-362 (400)
131 KOG3250|consensus 28.9 86 0.0019 29.6 4.3 95 281-391 60-154 (258)
132 KOG4507|consensus 28.6 2.5E+02 0.0055 30.6 8.1 84 144-246 625-708 (886)
133 KOG1840|consensus 28.0 7.7E+02 0.017 26.4 12.1 157 104-284 196-356 (508)
134 PLN03081 pentatricopeptide (PP 27.8 7.5E+02 0.016 27.0 12.3 128 56-243 293-420 (697)
135 KOG4642|consensus 27.2 1.1E+02 0.0024 29.6 4.8 59 182-248 53-112 (284)
136 PF08784 RPA_C: Replication pr 26.6 90 0.002 25.2 3.7 37 339-381 63-99 (102)
137 PRK11906 transcriptional regul 26.1 88 0.0019 32.8 4.3 42 216-260 374-415 (458)
138 COG5010 TadD Flp pilus assembl 25.5 4.1E+02 0.0089 25.7 8.4 104 142-271 116-220 (257)
139 PHA02608 67 prohead core prote 25.4 3E+02 0.0066 21.6 6.0 15 284-298 2-16 (80)
140 PRK09954 putative kinase; Prov 25.2 2E+02 0.0044 28.6 6.8 47 338-390 14-63 (362)
141 TIGR00756 PPR pentatricopeptid 25.0 1.3E+02 0.0028 17.9 3.5 27 176-202 3-29 (35)
142 PF12895 Apc3: Anaphase-promot 24.9 65 0.0014 24.5 2.5 26 214-239 25-50 (84)
143 smart00544 MA3 Domain in DAP-5 24.3 3.8E+02 0.0082 21.6 8.2 92 283-377 6-112 (113)
144 PF12960 DUF3849: Protein of u 24.1 2.7E+02 0.0058 24.2 6.2 89 284-398 5-95 (133)
145 cd05804 StaR_like StaR_like; a 24.0 4.6E+02 0.01 25.3 9.0 64 175-242 150-214 (355)
146 KOG3060|consensus 23.8 3.1E+02 0.0068 26.7 7.2 78 172-256 51-128 (289)
147 PF13429 TPR_15: Tetratricopep 23.7 1.7E+02 0.0036 27.8 5.6 87 142-248 162-248 (280)
148 PF12854 PPR_1: PPR repeat 23.6 1.3E+02 0.0027 19.2 3.3 26 174-199 8-33 (34)
149 PF01978 TrmB: Sugar-specific 23.6 3E+02 0.0065 20.1 6.6 49 320-381 8-56 (68)
150 PF12645 HTH_16: Helix-turn-he 22.9 2E+02 0.0043 21.6 4.7 27 285-311 2-28 (65)
151 smart00344 HTH_ASNC helix_turn 22.7 1.5E+02 0.0032 23.8 4.4 37 339-381 15-51 (108)
152 PF09639 YjcQ: YjcQ protein; 22.6 1.3E+02 0.0027 24.0 3.8 25 360-384 23-47 (88)
153 PF13431 TPR_17: Tetratricopep 22.2 50 0.0011 21.1 1.1 22 214-235 13-34 (34)
154 PF13412 HTH_24: Winged helix- 22.2 2.1E+02 0.0045 19.4 4.4 34 339-378 15-48 (48)
155 PRK15174 Vi polysaccharide exp 21.4 2.6E+02 0.0057 30.6 7.2 63 179-248 324-386 (656)
156 PRK10747 putative protoheme IX 20.7 2E+02 0.0043 29.2 5.7 34 214-247 328-361 (398)
157 PF13512 TPR_18: Tetratricopep 20.5 1.9E+02 0.0042 25.4 4.7 46 179-229 53-99 (142)
158 TIGR00985 3a0801s04tom mitocho 20.1 1.6E+02 0.0035 26.1 4.2 27 220-246 96-123 (148)
No 1
>KOG2688|consensus
Probab=100.00 E-value=1.4e-79 Score=605.60 Aligned_cols=390 Identities=36% Similarity=0.593 Sum_probs=368.9
Q ss_pred HHHHHHHHHHHhcCChHHHhchhCCcCCCCccccccccchHHHHHhhccCCHHHHHHHHHHHHHHhh-cCCHHHHHHHHH
Q psy9768 5 ERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKHEDFQKNVEDYVIRRYLEHPIFELVSAHLKCVQSIQ-ANNFNEAYLSQS 83 (406)
Q Consensus 5 ~~yl~~v~~a~~~~dg~~l~~lls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~evv~~~lk~~~~i~-~~~~~~a~~~~~ 83 (406)
++|++++..++...||+.++...+..+++.++++..++.++..+++++..||++++..|+++...+. +-+...||..+.
T Consensus 1 ~~y~~~~~~~~~~~d~~~~a~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~sa~~~~~ 80 (394)
T KOG2688|consen 1 NDYFSQLLSAVARLDGELLAVQLSRRDGHVQTSRTVFDAEEERLQQFIGKPFDTIVGLHLRVLLRVAYPCDAASAFSQQK 80 (394)
T ss_pred CchHHHHHHHHHhccHHHHHHhcCCCcchhhcchhhcccHHHHHHhccCCCcchhHhHHHHHHhhhccCcchhhhhhhHH
Confidence 4799999999999999999999999999999999888999999999999999999999999988777 678889999988
Q ss_pred HHHH-HHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHHHHHhhhhcCCCC
Q psy9768 84 TIVQ-GFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRT 162 (406)
Q Consensus 84 ~~~~-~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~~~F~~c~~D~~~ 162 (406)
+.+ ...++++...+++|++|+++.+|.+++.+|..++.+... .+ ..++..+|.+|++++++|+.|++|+++
T Consensus 81 -~~~~~~l~~~~s~~~~~w~~~~l~rv~~~l~~la~~~~~~~~~------~~-s~~~~~le~~s~~i~~~f~~cl~d~~~ 152 (394)
T KOG2688|consen 81 -LFGFLSLRAFSSGNDENWILPNLYRVCKDLRYLAINADCALLS------FS-SLPNQLLEAASRTISRLFSSCLSDRRA 152 (394)
T ss_pred -HHhhhhHHHHhcccccchHHHHHHHHHHHHHHHhhhhHHhhcC------cc-cCchHHHHHHHHHHHHHHHHHhCcccc
Confidence 444 667788888899999999999999999999999988742 11 356789999999999999999999999
Q ss_pred CCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC-CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHH
Q psy9768 163 SENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS-QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAF 241 (406)
Q Consensus 163 ~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~ 241 (406)
+.+++||||+++++|++|+|||++++++||+++++++++. +..+.++++|+|+|+||+|+++|++.||.+|+.+|.+||
T Consensus 153 ~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af 232 (394)
T KOG2688|consen 153 DLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAF 232 (394)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeeeeeeeehhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 667899999999999999999999999999999999999
Q ss_pred HHhcccchHHHHHHHHHHHHHHHhcCCCCChhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHhh
Q psy9768 242 QRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKL 321 (406)
Q Consensus 242 ~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~lerl 321 (406)
++||.....|+++||+|+||+.|++|++|+.+++++|.+..|.|+++|||.||+..|+.++++||.+|+++|+|++++++
T Consensus 233 ~~cp~~~~~n~~~iliylip~~~llg~~Pt~~lL~~~~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l 312 (394)
T KOG2688|consen 233 RLCPDLLLKNKRLILIYLIPTGLLLGRIPTKELLDFYTLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKL 312 (394)
T ss_pred HhCcHHHHhhhhhHHHHHhHHHHHhccCcchhhHhHhhHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCCCCCcc
Q psy9768 322 KMITYRNFYNIHKDIN-KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLS 400 (406)
Q Consensus 322 r~lv~rnL~kkv~~~~-~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~pFP~~~ 400 (406)
+.+||||||||||.++ +++++|++.|..|+++++.+++++||+||+|||||++|+|||||||+++++|+||++|||.++
T Consensus 313 ~lv~yrnL~kkv~~~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~pfp~~v 392 (394)
T KOG2688|consen 313 PLVVYRNLFKKVIQLWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDPFPHLV 392 (394)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCCCCCCC
Confidence 9999999999999998 889999999999999999888999999999999999999999999999999999999999987
Q ss_pred cc
Q psy9768 401 AI 402 (406)
Q Consensus 401 ~~ 402 (406)
.+
T Consensus 393 ~~ 394 (394)
T KOG2688|consen 393 LV 394 (394)
T ss_pred CC
Confidence 53
No 2
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.9e-63 Score=480.72 Aligned_cols=393 Identities=22% Similarity=0.337 Sum_probs=311.3
Q ss_pred HHHHHHHHHHHhcCChHHHhchhCCcCCCCcc--cccccc-chHHHHHhhccCCH---HHHHHHHHHH----HHHhhcCC
Q psy9768 5 ERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKH--EDFQKN-VEDYVIRRYLEHPI---FELVSAHLKC----VQSIQANN 74 (406)
Q Consensus 5 ~~yl~~v~~a~~~~dg~~l~~lls~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~---~evv~~~lk~----~~~i~~~~ 74 (406)
++|++++.+|+..+|...+..|++.++...+. ..+..+ +.++.....+..|| ++.+.-|+.. .++.++|+
T Consensus 1 nd~~~tl~~ava~~n~~~l~~cl~~~~re~~~L~~~l~~d~k~~~~~~~~iqr~~~~n~~~~tl~~q~~~~l~rd~dp~s 80 (413)
T COG5600 1 NDMANTLLDAVAHGNSSHLTKCLSQNGREIAILGKVLTGDSKIDAKLKETIQRPFGRNDTAVTLVLQKFLNLGRDKDPWS 80 (413)
T ss_pred ChHHHHHHHHHhcCchhhhhhhhccChhHHHHHhhhcccccCchhhhcceeeccccCCchhhhhhhHHHHHhhcCCChHh
Confidence 36899999999999999999999997543111 111111 11122222232222 4455544443 44444544
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhh-ccccCCCCCCCcchhHHHHHHHHHHHH
Q psy9768 75 FNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALA-SSIQDGNSGAKPRDALETTTEMLMTCF 153 (406)
Q Consensus 75 ~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~-~~~~~~~~~~~~~~~le~~a~~i~~~F 153 (406)
...++...++.+.+...+... ...|+.-....+.+.+..++..++-.... -...+.++ +..++.+|+++|.|+|+|
T Consensus 81 -kr~sel~q~~yk~lt~~~~~~-~~~~l~~lv~~~~R~~~~~~~~l~~~~kq~~~~l~~~s-~~~~d~l~~~sr~l~R~F 157 (413)
T COG5600 81 -KRSSELLQELYKNLTAELSYS-SAPHLEVLVKNAVRMLGREIWNLTVVKKQLYGLLELKS-ELNQDNLSKISRLLTRMF 157 (413)
T ss_pred -hhhHHHHHHHHHHHHHHHhcc-CccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHhcccc-hhhHhhHHHHHHHHHHHH
Confidence 333444444444444444433 46777776666666555555544433210 00011122 234688999999999999
Q ss_pred hhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC--CCCCCCCcchhhHHhhhhhhhhhhhccHH
Q psy9768 154 RICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS--QYKDKSSLSQQITYKYYVGRKAMFDSDYK 231 (406)
Q Consensus 154 ~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~--~~~~~~~~~~~vty~YY~Gr~~~~~~~~~ 231 (406)
+.|++||++...++||+|+|+++|++|+|||++++++||+|++++.+.. +..+.++++|+|+|+||+|++|+.++++.
T Consensus 158 n~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~h 237 (413)
T COG5600 158 NSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFH 237 (413)
T ss_pred HHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHH
Confidence 9999999988999999999999999999999999999999999998865 33347899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCC-CCChhhhchhc-hhhhHHHHHHHHhCCHHHHHHHHHHhHHHH
Q psy9768 232 TANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGF-MPTRELLDKYD-LLQLWDVTVAVKGGQINQLSDAMTKHQTFF 309 (406)
Q Consensus 232 ~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~-~P~~~ll~~~~-l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f 309 (406)
+|+-||.+||..||.--.+|+++|+.|+||..|+.|+ .|.+.+|++|+ ...|.+|++|||.||+..|+.++++||.+|
T Consensus 238 eA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~Ptk~~L~r~~~~s~~~~LvkavrsGni~~~~~~l~~ner~~ 317 (413)
T COG5600 238 EAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFPPTKDLLERFKRCSVYSPLVKAVRSGNIEDFDLALSRNERKF 317 (413)
T ss_pred HHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCCCchHHHHhccccchhHHHHHHHHcCCHHHHHHHHHHhHHHH
Confidence 9999999999999998889999999999999999988 57889999999 456999999999999999999999999999
Q ss_pred HHhcHHHHH-HhhHHHHHHHHHHHHHhcC-CCccccHHHHHHHhccccCC-CCCHHHHHHHHHHHHHcCceeEEEecCCc
Q psy9768 310 IKCGIYLIL-EKLKMITYRNFYNIHKDIN-KNSVVELQQFLQALHYVEGK-HIDLEDTHCLLCNLIHDGQLKGYISLAHQ 386 (406)
Q Consensus 310 ~~~glyl~l-erlr~lv~rnL~kkv~~~~-~~~~i~l~~~~~al~~~~~~-~~~~devEcilanLI~~g~IkGyIsh~~~ 386 (406)
.++|+|+++ ++.+.+|||||+||+|... +.+++|++.+..+++.++.+ ..++++|||+||+||.+|++||||||+.+
T Consensus 318 ~~~~l~ltl~~~~~~V~~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgYis~s~~ 397 (413)
T COG5600 318 AKRGLYLTLLAHYPLVCFRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRR 397 (413)
T ss_pred HHcchHHHHHhhccHHHHHHHHHHHHhhccccccCcHHHHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhheecccce
Confidence 999999875 7899999999999999997 45889999999999998764 26799999999999999999999999999
Q ss_pred EEEEcCCCCCCCcc
Q psy9768 387 KVVLSKTDPFPKLS 400 (406)
Q Consensus 387 ~lVlSk~~pFP~~~ 400 (406)
++|+||++|||...
T Consensus 398 ~vV~sk~~pFp~~V 411 (413)
T COG5600 398 TVVFSKKDPFPVSV 411 (413)
T ss_pred EEEEecCCCCCCCC
Confidence 99999999999753
No 3
>KOG2581|consensus
Probab=99.97 E-value=1.1e-30 Score=254.95 Aligned_cols=213 Identities=21% Similarity=0.337 Sum_probs=194.8
Q ss_pred hhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc-c
Q psy9768 169 KWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK-S 247 (406)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~-~ 247 (406)
.-|.-.+.|+|++.|..-+-++.+.++++.. +.++..+.+++.+|+||+||+.+++++|..|.++|..|.+..|. .
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~---~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKS---VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcc---cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4588899999999999999999999998753 45667778899999999999999999999999999999999995 4
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCChhhhchhc----hhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHhhHH
Q psy9768 248 SKKNKRLILIYLVPVKMLLGFMPTRELLDKYD----LLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKM 323 (406)
Q Consensus 248 ~~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~----l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~lerlr~ 323 (406)
+.+.++++-++.|.+.+++|.+|....+.+.+ |.+|..|.+|||.||+++|++.++++.+.|..+|+|.++.|||+
T Consensus 282 alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~ 361 (493)
T KOG2581|consen 282 ALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMRKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRH 361 (493)
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 57999999999999999999999999998884 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcC
Q psy9768 324 ITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSK 392 (406)
Q Consensus 324 lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk 392 (406)
.|+++.+|++.+. ++||++.+|+..|.+- +.+++|.|++..|.+|.|+|.|+|+.|++ .||
T Consensus 362 NVIkTgIR~ISls--YSRISl~DIA~kL~l~-----Seed~EyiVakAIRDGvIea~Id~~~g~m-~sk 422 (493)
T KOG2581|consen 362 NVIKTGIRKISLS--YSRISLQDIAKKLGLN-----SEEDAEYIVAKAIRDGVIEAKIDHEDGFM-QSK 422 (493)
T ss_pred HHHHHhhhheeee--eeeccHHHHHHHhcCC-----CchhHHHHHHHHHHhccceeeeccccCce-ehh
Confidence 9999999999885 4999999999999652 45689999999999999999999999964 454
No 4
>KOG1464|consensus
Probab=99.77 E-value=1.5e-17 Score=156.71 Aligned_cols=237 Identities=16% Similarity=0.242 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcc-hhhHHhhhhh
Q psy9768 143 ETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLS-QQITYKYYVG 221 (406)
Q Consensus 143 e~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~-~~vty~YY~G 221 (406)
.+...++......|.+|.. ..+.-|...++-+..+.+++|....+-.-.+-+...- -.+.+..|.. -.-+.+-+.|
T Consensus 162 ~kl~KIlkqLh~SCq~edG-edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa--lhiKSAIPHPlImGvIRECGG 238 (440)
T KOG1464|consen 162 TKLQKILKQLHQSCQTEDG-EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA--LHIKSAIPHPLIMGVIRECGG 238 (440)
T ss_pred HHHHHHHHHHHHHhccccC-chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH--HHhhccCCchHHHhHHHHcCC
Confidence 3445566666678998743 2233344558889999999999988877777665321 0122333322 2246789999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCC-CCChhhhc--hhc----hhhhHHHHHHHHhCC
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGF-MPTRELLD--KYD----LLQLWDVTVAVKGGQ 294 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~-~P~~~ll~--~~~----l~~y~~l~~aik~Gn 294 (406)
++++-+|+|.+|...|.+||+++.+++.+.|..+|+||+..+|++.. +.+++-.+ +|. +..+.+++.|..+.|
T Consensus 239 KMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 239 KMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVAAYQNND 318 (440)
T ss_pred ccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999943 55555433 343 445889999999999
Q ss_pred HHHHHHHHHHhH-----HHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHH
Q psy9768 295 INQLSDAMTKHQ-----TFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLC 369 (406)
Q Consensus 295 l~~f~~~l~~~~-----~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcila 369 (406)
+..|++++..|+ +.|++.++-.++..+|..|+..|+| +++.|.++.+...|+ ++..|||.+|+
T Consensus 319 I~eFE~Il~~~~~~IM~DpFIReh~EdLl~niRTQVLlkLIk------PYt~i~Ipfis~~Ln------v~~~dV~~LLV 386 (440)
T KOG1464|consen 319 IIEFERILKSNRSNIMDDPFIREHIEDLLRNIRTQVLLKLIK------PYTNIGIPFISKELN------VPEADVESLLV 386 (440)
T ss_pred HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhc------cccccCchhhHhhcC------CCHHHHHHHHH
Confidence 999999999987 5899999999999999999999999 678888888988884 67899999999
Q ss_pred HHHHcCceeEEEecCCcEEEEcCCC
Q psy9768 370 NLIHDGQLKGYISLAHQKVVLSKTD 394 (406)
Q Consensus 370 nLI~~g~IkGyIsh~~~~lVlSk~~ 394 (406)
++|.+..|+|.|+..++.+.+.|..
T Consensus 387 ~~ILD~~i~g~Ide~n~~l~~~~~~ 411 (440)
T KOG1464|consen 387 SCILDDTIDGRIDEVNQYLELDKSK 411 (440)
T ss_pred HHHhccccccchHHhhhHhccCccC
Confidence 9999999999999999999887654
No 5
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.59 E-value=3.5e-14 Score=116.92 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHh-HHHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCC
Q psy9768 282 QLWDVTVAVKGGQINQLSDAMTKH-QTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHID 360 (406)
Q Consensus 282 ~y~~l~~aik~Gnl~~f~~~l~~~-~~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~ 360 (406)
.|.++++|+.+||+..|.+.++++ +.++.+.+++..++.++..+.++.+++++. .+++|+++.++.++. ++
T Consensus 2 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~--~y~~i~~~~ia~~l~------~~ 73 (105)
T PF01399_consen 2 PYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSK--PYSSISISEIAKALQ------LS 73 (105)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH--C-SEEEHHHHHHHHT------CC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHH--HhcccchHHHHHHhc------cc
Confidence 588999999999999999999999 899999999999999999999999999988 569999999999995 46
Q ss_pred HHHHHHHHHHHHHcCceeEEEecCCcEEEEcC
Q psy9768 361 LEDTHCLLCNLIHDGQLKGYISLAHQKVVLSK 392 (406)
Q Consensus 361 ~devEcilanLI~~g~IkGyIsh~~~~lVlSk 392 (406)
.+|+|+++++||.+|.|+|+|+|.+++|+++|
T Consensus 74 ~~~vE~~l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 74 EEEVESILIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred hHHHHHHHHHHHHCCCEEEEEECCCCEEEecC
Confidence 79999999999999999999999999999986
No 6
>KOG1463|consensus
Probab=98.96 E-value=1.5e-07 Score=91.71 Aligned_cols=211 Identities=18% Similarity=0.211 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCC-CCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccch-
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDK-SSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSK- 249 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~-~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~- 249 (406)
+.-+--+.-|.||.++|+.-++.-+.+-..+. ++. .|...|.+----.|.+++-+.||..|+.+|.+||+-.+.-..
T Consensus 167 Lvev~llESK~y~~l~Nl~KakasLTsART~A-naiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~ 245 (411)
T KOG1463|consen 167 LVEVHLLESKAYHALRNLPKAKASLTSARTTA-NAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD 245 (411)
T ss_pred eeeehhhhhHHHHHHhcchhHHHHHHHHHHhh-cccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCc
Confidence 33444556789999999999988876655432 223 477888899999999999999999999999999998775443
Q ss_pred HHHHHHHHHHHHHHHhcCCCC-------Chhhhchhc---hhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHH-HH
Q psy9768 250 KNKRLILIYLVPVKMLLGFMP-------TRELLDKYD---LLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYL-IL 318 (406)
Q Consensus 250 ~nk~~IL~yLIp~~lllG~~P-------~~~ll~~~~---l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl-~l 318 (406)
.+--..|+|++.|+++++..- .+.-++ |. +....-+.+|..+-+++.|+.++.+|..++..+-+-- -+
T Consensus 246 v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~-y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl 324 (411)
T KOG1463|consen 246 VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK-YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHL 324 (411)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh-ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHH
Confidence 466678999999999987532 222222 42 4457788999999999999999999887655554421 12
Q ss_pred HhhHHH-HHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC
Q psy9768 319 EKLKMI-TYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT 393 (406)
Q Consensus 319 erlr~l-v~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~ 393 (406)
..|-.. .=.||+|- |-++++|.++.|..-+. +|...||--++.||-+...-|-++|..+|+++=..
T Consensus 325 ~~Lyd~lLEknl~ri---IEPyS~Vei~hIA~~IG------l~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e 391 (411)
T KOG1463|consen 325 QSLYDNLLEKNLCRI---IEPYSRVEISHIAEVIG------LDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEE 391 (411)
T ss_pred HHHHHHHHHHhHHHH---cCchhhhhHHHHHHHHC------CCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCC
Confidence 222222 22456663 34789999999988874 46799999999999999999999999999887443
No 7
>KOG2908|consensus
Probab=98.66 E-value=8.2e-06 Score=79.81 Aligned_cols=216 Identities=14% Similarity=0.194 Sum_probs=141.9
Q ss_pred hcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC-CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc--
Q psy9768 170 WGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS-QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK-- 246 (406)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~-- 246 (406)
.++.++-...-++|..+|.+.-|+.++--.++. .-....|.+=...|+--...+|=..+||..++.|.-. |..|..
T Consensus 112 ~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~-YL~~~d~~ 190 (380)
T KOG2908|consen 112 DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALL-YLGCSDID 190 (380)
T ss_pred hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHH-Hhcccccc
Confidence 689999999999999999999999998776653 1111222221112211122233344667666655222 113442
Q ss_pred cchHHHHHHHHHHHHHHHhcCC-CCChhhhchhchh---------hhHHHHHHHHhCCHHHHHHHHHHhHH-HHHHhcHH
Q psy9768 247 SSKKNKRLILIYLVPVKMLLGF-MPTRELLDKYDLL---------QLWDVTVAVKGGQINQLSDAMTKHQT-FFIKCGIY 315 (406)
Q Consensus 247 ~~~~nk~~IL~yLIp~~lllG~-~P~~~ll~~~~l~---------~y~~l~~aik~Gnl~~f~~~l~~~~~-~f~~~gly 315 (406)
+.+.-.++-+-+...+.-++|. +-++..|-.+|.. -..++..|+..||+.+|++....+.. .-+...--
T Consensus 191 ~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~~~~p~L~~~e~ 270 (380)
T KOG2908|consen 191 DLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGDLKRFESLKGVWGKQPDLASNED 270 (380)
T ss_pred ccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCCHHHHHHHHHHhccCchHHHHHH
Confidence 1222334455566666777776 7666544333321 24689999999999999999887654 33344445
Q ss_pred HHHHhhHHHHHHHHHHHHHhcC-CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCC
Q psy9768 316 LILEKLKMITYRNFYNIHKDIN-KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTD 394 (406)
Q Consensus 316 l~lerlr~lv~rnL~kkv~~~~-~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~ 394 (406)
.+.+|++.+|+-++ +|.-- .-..||++.|+.+.+ ++.+|||-++...+..|+|||.|+...++|=.|-..
T Consensus 271 ~L~qKI~LmaLiEi---~F~rpa~~R~lsf~~Ia~~tk------ip~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvq 341 (380)
T KOG2908|consen 271 FLLQKIRLLALIEI---TFSRPANERTLSFKEIAEATK------IPNKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQ 341 (380)
T ss_pred HHHHHHHHHHHHHH---HhcCcchhccccHHHHHHHhC------CCHHHHHHHHHHHHhccceeeeecccccEEEEeccc
Confidence 56788888886554 44321 124699999999985 567999999999999999999999999988776544
Q ss_pred C
Q psy9768 395 P 395 (406)
Q Consensus 395 p 395 (406)
|
T Consensus 342 P 342 (380)
T KOG2908|consen 342 P 342 (380)
T ss_pred c
Confidence 4
No 8
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00031 Score=67.74 Aligned_cols=211 Identities=19% Similarity=0.257 Sum_probs=152.2
Q ss_pred hcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccch
Q psy9768 170 WGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSK 249 (406)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 249 (406)
.-+..+--+.-|.|+++.|..-.+.-+.+-......--.|..-+..----.|.+++.+.||..|..+|-+||+-.+.-..
T Consensus 162 ~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~ 241 (421)
T COG5159 162 INLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKM 241 (421)
T ss_pred cceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccc
Confidence 34444555678999999999888777666543321112355556677788999999999999999999999997775332
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCC-hhh------hchhc---hhhhHHHHHHHHhCCHHHHHHHHHHhHH-----HHHHhc
Q psy9768 250 -KNKRLILIYLVPVKMLLGFMPT-REL------LDKYD---LLQLWDVTVAVKGGQINQLSDAMTKHQT-----FFIKCG 313 (406)
Q Consensus 250 -~nk~~IL~yLIp~~lllG~~P~-~~l------l~~~~---l~~y~~l~~aik~Gnl~~f~~~l~~~~~-----~f~~~g 313 (406)
.--...|+|++..+++++..-. +.+ ++.|. +..+.-+.+|.-+-++..|..+++++++ .|++.+
T Consensus 242 d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsH 321 (421)
T COG5159 242 DVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSH 321 (421)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHH
Confidence 3345589999999988865432 222 23332 2346677888889999999999999765 566666
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcC
Q psy9768 314 IYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSK 392 (406)
Q Consensus 314 lyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk 392 (406)
+--+-. .+.=.|++|.+ -+.+++.++.|...+. .|...||.-+..||-+...-|-++|.++|+++-.
T Consensus 322 l~~LYD---~LLe~Nl~kii---EPfs~VeishIa~viG------ldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ 388 (421)
T COG5159 322 LQYLYD---VLLEKNLVKII---EPFSVVEISHIADVIG------LDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYG 388 (421)
T ss_pred HHHHHH---HHHHhhhhhhc---CcceeeehhHHHHHhc------ccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeC
Confidence 521111 11124666643 3678899988887773 4678999999999999999999999999998843
No 9
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=98.08 E-value=1.8e-05 Score=63.21 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=56.2
Q ss_pred HHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCC
Q psy9768 317 ILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDP 395 (406)
Q Consensus 317 ~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~p 395 (406)
+.++++..+++.+.+ .+..|+++.+...+. ++.+++|-++.++|.+|.|+|.|+|..+++++.+..|
T Consensus 6 l~~~~~~~~l~~l~~------~y~~i~~~~i~~~~~------l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~ 72 (88)
T smart00088 6 LQRKIRLTNLLQLSE------PYSSISLSDLAKLLG------LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDP 72 (88)
T ss_pred HHHHHHHHHHHHHhH------HhceeeHHHHHHHhC------cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCch
Confidence 456667777777776 358899999999984 4668999999999999999999999999999987654
No 10
>smart00753 PAM PCI/PINT associated module.
Probab=98.08 E-value=1.8e-05 Score=63.21 Aligned_cols=67 Identities=18% Similarity=0.357 Sum_probs=56.2
Q ss_pred HHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCC
Q psy9768 317 ILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDP 395 (406)
Q Consensus 317 ~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~p 395 (406)
+.++++..+++.+.+ .+..|+++.+...+. ++.+++|-++.++|.+|.|+|.|+|..+++++.+..|
T Consensus 6 l~~~~~~~~l~~l~~------~y~~i~~~~i~~~~~------l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~ 72 (88)
T smart00753 6 LQRKIRLTNLLQLSE------PYSSISLSDLAKLLG------LSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDP 72 (88)
T ss_pred HHHHHHHHHHHHHhH------HhceeeHHHHHHHhC------cCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCch
Confidence 456667777777776 358899999999984 4668999999999999999999999999999987654
No 11
>KOG2582|consensus
Probab=97.81 E-value=0.00064 Score=67.36 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=135.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHh--ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc------
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAI--ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS------ 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i--~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~------ 248 (406)
..+|+.+.+.+++.-.-+.+..- +-..-..+.|.++...|.||.|.++.=..+|+.|-..|..+.- .|..+
T Consensus 144 ~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~-~Pa~~vs~~hl 222 (422)
T KOG2582|consen 144 ADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT-TPAMAVSHIHL 222 (422)
T ss_pred HHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh-cchhHHHHHHH
Confidence 34555555555555443333210 0011123577889999999999999999999999998877765 23221
Q ss_pred hHHHHHHHHHHHHHHHhcCC---CCChh---hhc--hhchhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHh
Q psy9768 249 KKNKRLILIYLVPVKMLLGF---MPTRE---LLD--KYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEK 320 (406)
Q Consensus 249 ~~nk~~IL~yLIp~~lllG~---~P~~~---ll~--~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~ler 320 (406)
-..|.-+|.+|| +.|+ +|+.. .+. |.--.+|.++..+.-++.-...+..+.+|.+.|.|+|---++..
T Consensus 223 EaYkkylLvsLI----~~GK~~ql~k~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~l~k~ 298 (422)
T KOG2582|consen 223 EAYKKYLLVSLI----LTGKVFQLPKNTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTGLAKQ 298 (422)
T ss_pred HHHHHHHHHHhh----hcCceeeccccchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 123555555554 5687 46532 221 22223799999999999999999999999999999987655433
Q ss_pred hHHHHH-HHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCCCC
Q psy9768 321 LKMITY-RNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFP 397 (406)
Q Consensus 321 lr~lv~-rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~pFP 397 (406)
+-...+ ||+-|-.- ....+++++++.-.++. ..+|||-.+..+|.+|-|-..|+ |.+++ ..||=|
T Consensus 299 av~sl~k~nI~rltk---tF~sLsL~dIA~~vQLa-----~~qevek~Ilqmie~~~i~a~iN---G~v~f-~~n~e~ 364 (422)
T KOG2582|consen 299 AVSSLYKKNIQRLTK---TFLSLSLSDIASRVQLA-----SAQEVEKYILQMIEDGEIFASIN---GMVFF-TDNPEK 364 (422)
T ss_pred HHHHHHHHHHHHHHH---HHHHhhHHHHHHHHHhc-----chHHHHHHHHHHhccCceEEEec---ceEEE-ecCccc
Confidence 333333 44433211 12578999998866653 45899999999999999999996 66555 344443
No 12
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=97.35 E-value=0.052 Score=55.55 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=120.7
Q ss_pred cccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC--CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHH
Q psy9768 165 NDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS--QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQ 242 (406)
Q Consensus 165 ~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~--~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~ 242 (406)
+-.|..|.+.++ .|+|++.-+|.+..|-.++..|+-. .+....|.++ ||..||.|=-||.-++|.+|-..|+..+.
T Consensus 115 ~l~~~LGYFSli-gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~-is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 115 PLYKMLGYFSLI-GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACH-ISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cHHHHhhHHHHH-HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchh-eehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666766654 5689999999999999999998864 3344555555 46669999999999999999999999877
Q ss_pred Hhcccc--------------hHHHHHHHHHHHHHHHhcCCCCChhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhHHH
Q psy9768 243 RCHKSS--------------KKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTF 308 (406)
Q Consensus 243 ~c~~~~--------------~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~ 308 (406)
.-.+.. +++-++....-|...+.-+++|..- ... --+.|.+=...+..||+..|++....--..
T Consensus 193 yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i-~~~-lkeky~ek~~kmq~gd~~~f~elF~~acPK 270 (404)
T PF10255_consen 193 YIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESI-SSQ-LKEKYGEKMEKMQRGDEEAFEELFSFACPK 270 (404)
T ss_pred HHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHH-HHH-HHHHHHHHHHHHHccCHHHHHHHHHhhCCC
Confidence 433222 2333333333333333334444321 111 012477878889999999999998853222
Q ss_pred --------------------HHHhcHHHHHHh----hHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHH
Q psy9768 309 --------------------FIKCGIYLILEK----LKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDT 364 (406)
Q Consensus 309 --------------------f~~~glyl~ler----lr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~dev 364 (406)
-.++.+-+.++- .....+|..+| + ++.||++.++.=+ ++|++++
T Consensus 271 FIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLK----L--Ytti~l~KLA~fl------~vd~~~l 338 (404)
T PF10255_consen 271 FISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLK----L--YTTIPLEKLASFL------DVDEEEL 338 (404)
T ss_pred ccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH----h--hcCCCHHHHHHHc------CCCHHHH
Confidence 222223233333 33334455544 2 4889998876554 5677777
Q ss_pred HHHHHHHH
Q psy9768 365 HCLLCNLI 372 (406)
Q Consensus 365 EcilanLI 372 (406)
-..|...=
T Consensus 339 r~~Ll~~K 346 (404)
T PF10255_consen 339 RSQLLCFK 346 (404)
T ss_pred HHHHHHHH
Confidence 66665443
No 13
>KOG2753|consensus
Probab=96.85 E-value=0.0052 Score=60.31 Aligned_cols=110 Identities=13% Similarity=0.305 Sum_probs=92.5
Q ss_pred CCChhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHH--HHHHhhHHHHHHHHHHHHHhcCCCccccHHH
Q psy9768 269 MPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIY--LILEKLKMITYRNFYNIHKDINKNSVVELQQ 346 (406)
Q Consensus 269 ~P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~gly--l~lerlr~lv~rnL~kkv~~~~~~~~i~l~~ 346 (406)
+|+-..|++- ...++..-+-+|-+..|-+..++|..+.-..|+. .++-|+|.+.+-.|-- .+..||++.
T Consensus 229 L~pV~qLE~d---~i~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~E~~~~KMRLLTlm~LA~------es~eisy~~ 299 (378)
T KOG2753|consen 229 LPPVKQLEGD---LIHQLLKIFVSGKLDAYVEFVAANSGFVQSQGLVHEQNMAKMRLLTLMSLAE------ESNEISYDT 299 (378)
T ss_pred CchHHHhccc---hHHHHHHHHHhcchHHHHHHHHhChHHHHHhcccHHHHHHHHHHHHHHHHhc------cCCCCCHHH
Confidence 4444444442 2567778888999999999999999999999995 4689999988766655 578999999
Q ss_pred HHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC
Q psy9768 347 FLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT 393 (406)
Q Consensus 347 ~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~ 393 (406)
++.-|+ ++.||||-.+...|.-|.|.|.|+.-+++|++|..
T Consensus 300 l~k~Lq------I~edeVE~fVIdaI~aklV~~kidq~~~~viVs~~ 340 (378)
T KOG2753|consen 300 LAKELQ------INEDEVELFVIDAIRAKLVEGKIDQMNRTVIVSSS 340 (378)
T ss_pred HHHHhc------cCHHHHHHHHHHHHHHHHHHhhHHhhcceEEeehh
Confidence 999995 57899999999999999999999999999999864
No 14
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.70 E-value=0.015 Score=37.08 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=28.9
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.+.|++|.+++..++|.+|.+++..|++.+|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 46799999999999999999999999999885
No 15
>KOG1497|consensus
Probab=95.24 E-value=0.5 Score=46.67 Aligned_cols=207 Identities=14% Similarity=0.222 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHH
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNK 252 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk 252 (406)
+.+--.+-+.|.+.+...-+.-++...+- +..+.....-++.|.-+-+|..=..++|-+|-..+.+-... ..-...-+
T Consensus 144 l~l~iriarlyLe~~d~veae~~inRaSi-l~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~-ki~~e~~~ 221 (399)
T KOG1497|consen 144 LLLCIRIARLYLEDDDKVEAEAYINRASI-LQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR-KIVDESER 221 (399)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence 34444566788888887777776643221 11122222334778888888888888998887766532211 00111224
Q ss_pred HHHHHHHHHHHHhcCC-------------------CCChhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhc
Q psy9768 253 RLILIYLVPVKMLLGF-------------------MPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCG 313 (406)
Q Consensus 253 ~~IL~yLIp~~lllG~-------------------~P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~g 313 (406)
+.-|.--+.|-++-+- +|...+++|+ =+-+-|+.-++..|...|..|+..-..+|
T Consensus 222 ~~aL~~a~~CtlLA~~gpqrsr~Latlfkder~~~l~~y~ileKm------yl~riI~k~el~ef~~~L~pHQka~~~dg 295 (399)
T KOG1497|consen 222 LEALKKALQCTLLASAGPQRSRMLATLFKDERCQKLPAYGILEKM------YLERIIRKEELQEFEAFLQPHQKAHTMDG 295 (399)
T ss_pred HHHHHHhHhheeecCCChHHHHHHHHHhcCcccccccchHHHHHH------HHHHHhcchhHHHHHHHhcchhhhcccCc
Confidence 4445554555444432 3333333322 23456888999999999999987655554
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC
Q psy9768 314 IYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT 393 (406)
Q Consensus 314 lyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~ 393 (406)
.-.+ . |.+.=-|++-- ... ++.|+++.+.+-| ++|.+-+|.|.|+||-+|.++|+|+..++.+=+-..
T Consensus 296 ssil-~--ra~~EhNlls~-Skl--y~nisf~~Lg~ll------~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~ 363 (399)
T KOG1497|consen 296 SSIL-D--RAVIEHNLLSA-SKL--YNNISFEELGALL------KIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDR 363 (399)
T ss_pred chhh-h--hHHHHHhHHHH-HHH--HHhccHHHHHHHh------CCCHHHHHHHHHHHHhHHHhccchHhhcceEeecch
Confidence 4221 0 11111122211 111 2567777776666 468899999999999999999999999999988888
Q ss_pred CCCCCc
Q psy9768 394 DPFPKL 399 (406)
Q Consensus 394 ~pFP~~ 399 (406)
+|.|.-
T Consensus 364 e~l~~w 369 (399)
T KOG1497|consen 364 EELPQW 369 (399)
T ss_pred hhhhhh
Confidence 888763
No 16
>KOG0687|consensus
Probab=95.20 E-value=0.62 Score=46.15 Aligned_cols=198 Identities=12% Similarity=0.130 Sum_probs=127.1
Q ss_pred HHHHHhcCChhhHHHHHHHhccCCCCCC-CCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy9768 180 FKVYFRISKLHLMKPLIRAIESSQYKDK-SSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIY 258 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i~~~~~~~~-~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~y 258 (406)
+++=+--++.++....|...++- .+. -.=--+=+|+=|.|.+.|.-.+|.+|-..|..++..-...-.---..+..|
T Consensus 148 iRlglfy~D~~lV~~~iekak~l--iE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Y 225 (393)
T KOG0687|consen 148 IRLGLFYLDHDLVTESIEKAKSL--IEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRY 225 (393)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH--HHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHH
Confidence 34434445666665555443321 000 000112378999999999999999999999988764433211223345667
Q ss_pred HHHHHHhcCC--------CCChhhhchhc-hhhhHHHHHHHHhCCHHHHHHHHHHhH------HHHHHhcHHHHHHhhHH
Q psy9768 259 LVPVKMLLGF--------MPTRELLDKYD-LLQLWDVTVAVKGGQINQLSDAMTKHQ------TFFIKCGIYLILEKLKM 323 (406)
Q Consensus 259 LIp~~lllG~--------~P~~~ll~~~~-l~~y~~l~~aik~Gnl~~f~~~l~~~~------~~f~~~glyl~lerlr~ 323 (406)
-|-+.|+.=. +-.+++++.-+ +..-.++..++=..|...|-..+...+ ++|+..+.-.-+.-+|.
T Consensus 226 tv~~g~i~leR~dlktKVi~~~Evl~vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~ 305 (393)
T KOG0687|consen 226 TVITGLIALERVDLKTKVIKCPEVLEVLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRR 305 (393)
T ss_pred HHHHhhheeccchHHhhhcCcHHHHHHhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHH
Confidence 7777776411 22333333221 223446666777788888887775432 34554444344556677
Q ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEc
Q psy9768 324 ITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLS 391 (406)
Q Consensus 324 lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlS 391 (406)
.||-.++- .+-.+.++.++.++. ++.+-++.=|+..|..|.+..+|+..+|+|-.-
T Consensus 306 rvY~QlLE------SYrsl~l~~MA~aFg------VSVefiDreL~rFI~~grL~ckIDrVnGVVEtN 361 (393)
T KOG0687|consen 306 RVYAQLLE------SYRSLTLESMAKAFG------VSVEFIDRELGRFIAAGRLHCKIDRVNGVVETN 361 (393)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHhC------chHHHHHhHHHHhhccCceeeeeecccceeecC
Confidence 78877777 345678999999984 577888888999999999999999999977553
No 17
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.6 Score=45.66 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=131.1
Q ss_pred ccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCC-CCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHh
Q psy9768 166 DSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDK-SSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRC 244 (406)
Q Consensus 166 ~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~-~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 244 (406)
.+-|..+++-- +++=+-.|+..-.+..+.+++.- .+. -.=--+=+|+=|.|.+.|.-.+|.+|-..|..++..-
T Consensus 148 tg~KiDv~l~k---iRlg~~y~d~~vV~e~lE~~~~~--iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 148 TGLKIDVFLCK---IRLGLIYGDRKVVEESLEVADDI--IEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred cccchhhHHHH---HHHHHhhccHHHHHHHHHHHHHH--HHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 34455555433 33333446666666666655431 110 0001234799999999999999999999999887754
Q ss_pred cccchHHHHHHHHHHHHHHHhc--------CCCCChhhhchhchh----hhHHHHHHHHhCCHHHHHH-HHHHh-----H
Q psy9768 245 HKSSKKNKRLILIYLVPVKMLL--------GFMPTRELLDKYDLL----QLWDVTVAVKGGQINQLSD-AMTKH-----Q 306 (406)
Q Consensus 245 ~~~~~~nk~~IL~yLIp~~lll--------G~~P~~~ll~~~~l~----~y~~l~~aik~Gnl~~f~~-~l~~~-----~ 306 (406)
...-.---..+..|-|.+.++. ..+-++++|.--+-. -...++.++-..|..+|=- .+.-+ -
T Consensus 223 ~S~El~sY~~~vrYa~~~Gl~~leR~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~ 302 (412)
T COG5187 223 ESSELISYSRAVRYAIFCGLLRLERRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQD 302 (412)
T ss_pred cccccccHHHHHHHHHHhhhheeehhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccc
Confidence 4333233456778888888874 124556555433322 1334555666666663322 22221 1
Q ss_pred HHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCc
Q psy9768 307 TFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQ 386 (406)
Q Consensus 307 ~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~ 386 (406)
+.|+-++.-+.+.-+|.-||-.|+.. +..++++.++.++. ++.+-++.=|+.-|-+|.+...|+..+|
T Consensus 303 d~fl~rh~d~fvREMRrrvYaQlLES------Yr~lsl~sMA~tFg------VSV~yvdrDLg~FIp~~~LncvIDRvnG 370 (412)
T COG5187 303 DVFLGRHVDLFVREMRRRVYAQLLES------YRLLSLESMAQTFG------VSVEYVDRDLGEFIPEGRLNCVIDRVNG 370 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHhC------ccHHHHhhhHHhhCCCCceeeeeecccc
Confidence 35555555444555566666666663 45578999998884 5778889999999999999999999999
Q ss_pred EEEE
Q psy9768 387 KVVL 390 (406)
Q Consensus 387 ~lVl 390 (406)
+|-.
T Consensus 371 vVet 374 (412)
T COG5187 371 VVET 374 (412)
T ss_pred eEec
Confidence 7654
No 18
>KOG2758|consensus
Probab=94.95 E-value=0.14 Score=50.56 Aligned_cols=99 Identities=16% Similarity=0.320 Sum_probs=73.2
Q ss_pred HHHHHHH-hCCHHHHHHHHHHhH-----HHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCC
Q psy9768 285 DVTVAVK-GGQINQLSDAMTKHQ-----TFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKH 358 (406)
Q Consensus 285 ~l~~aik-~Gnl~~f~~~l~~~~-----~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~ 358 (406)
+++.|+- +-|..+=.+.|.+-| ++|+-.-+-..+|..|.+++-..+|. + ..|+++.++..|+
T Consensus 293 eFl~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l~~F~E~ARl~ifEtfCRI-H-----qcIti~mLA~kLn------ 360 (432)
T KOG2758|consen 293 EFLECLYVNYDFDGAQKKLRECEEVLVNDFFLVALLDEFLENARLLIFETFCRI-H-----QCITIDMLADKLN------ 360 (432)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH-H-----HheeHHHHHHHhc------
Confidence 4444432 335555555555544 35654445556799999998888773 2 5689999998884
Q ss_pred CCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCC
Q psy9768 359 IDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDP 395 (406)
Q Consensus 359 ~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~p 395 (406)
++.+|+||+++|||...+|.++|+.+.|.||...+.+
T Consensus 361 m~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~ 397 (432)
T KOG2758|consen 361 MDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTV 397 (432)
T ss_pred CCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCC
Confidence 5789999999999999999999999999999876543
No 19
>KOG0686|consensus
Probab=94.81 E-value=0.72 Score=46.97 Aligned_cols=190 Identities=15% Similarity=0.236 Sum_probs=114.5
Q ss_pred cCChhhHHHHHHHhccCCCCCCCCcchhhHH--hhhhhhhhhhhccHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHH
Q psy9768 186 ISKLHLMKPLIRAIESSQYKDKSSLSQQITY--KYYVGRKAMFDSDYKTANEYLTFA-FQRCHKSSKKNKRLILIYLVPV 262 (406)
Q Consensus 186 l~~~~l~~~~~~~i~~~~~~~~~~~~~~vty--~YY~Gr~~~~~~~~~~A~~~L~~A-~~~c~~~~~~nk~~IL~yLIp~ 262 (406)
+||..-.-..+..-+++|.- .-..+++|.. .-+.|.-.+-.++|..|-.+|-.| +.+|.....-...-|-.|--.|
T Consensus 200 ~~nw~hv~sy~~~A~st~~~-~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc 278 (466)
T KOG0686|consen 200 MGNWGHVLSYISKAESTPDA-NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC 278 (466)
T ss_pred hcchhhhhhHHHHHHhCchh-hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH
Confidence 45555444444433333211 1123444433 456788888888999988887766 6677733222233344444444
Q ss_pred HHhcCCCCChhhhc---------hh-chh-hhHHHHHHHHhCCHHHHHHHHHHhH-----HHHHHhcHHHHHHhhHHHHH
Q psy9768 263 KMLLGFMPTRELLD---------KY-DLL-QLWDVTVAVKGGQINQLSDAMTKHQ-----TFFIKCGIYLILEKLKMITY 326 (406)
Q Consensus 263 ~lllG~~P~~~ll~---------~~-~l~-~y~~l~~aik~Gnl~~f~~~l~~~~-----~~f~~~glyl~lerlr~lv~ 326 (406)
.|-. +-..+|.. .| ++. ...+++.+.-++-....-+.|++.+ +.++..++-.+.+++|.-+.
T Consensus 279 ALAt--fdr~~Lk~~vi~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~l 356 (466)
T KOG0686|consen 279 ALAT--FDRQDLKLNVIKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRAL 356 (466)
T ss_pred hhcc--CCHHHHHHHHHcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhH
Confidence 3332 22222221 11 111 2445555666665555555555544 57788887777777776554
Q ss_pred HHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEE
Q psy9768 327 RNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVL 390 (406)
Q Consensus 327 rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVl 390 (406)
...+. ++..++++.++.|++ .+..++|.=|-.||.+|.|+|.|+..++++-.
T Consensus 357 lqy~~------py~s~~m~~mA~af~------~sv~~le~~l~~LI~~~~i~~rIDs~~ki~~~ 408 (466)
T KOG0686|consen 357 LQYLS------PYSSADMSKMAEAFN------TSVAILESELLELILEGKISGRIDSHNKILYA 408 (466)
T ss_pred HHhcC------ccccchHHHHHHHhc------ccHHHHHHHHHHHHHccchheeeccccceeee
Confidence 33333 678899999999995 47789999999999999999999877765433
No 20
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.69 E-value=2.1 Score=41.58 Aligned_cols=131 Identities=13% Similarity=0.128 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|.....++-.....+. +....--+...+-.+|.++++++-+-.++..+-.........+-..-.|..-.|
T Consensus 131 ~e~Ai~~Y~~A~~~y~~e~-------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 131 YEKAIEYYQKAAELYEQEG-------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT--------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 6777777777766655542 234455566677788999999999988887654332211111112224656678
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCChhhhchhchhhhHHHHHHHHhCCHHHHHHH
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDA 301 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~ 301 (406)
.+++..+|+..|.+.|...-..||.=.. +.+ + .--.+|++|++.||...|.++
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~---------------------s~E----~--~~~~~l~~A~~~~D~e~f~~a 256 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFAS---------------------SRE----Y--KFLEDLLEAYEEGDVEAFTEA 256 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTT---------------------SHH----H--HHHHHHHHHHHTT-CCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCC---------------------cHH----H--HHHHHHHHHHHhCCHHHHHHH
Confidence 8899999999999987777666553110 111 1 124589999999999999999
Q ss_pred HHHhH
Q psy9768 302 MTKHQ 306 (406)
Q Consensus 302 l~~~~ 306 (406)
+..+.
T Consensus 257 v~~~d 261 (282)
T PF14938_consen 257 VAEYD 261 (282)
T ss_dssp CHHHT
T ss_pred HHHHc
Confidence 99875
No 21
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.41 E-value=0.1 Score=39.26 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|..+|++.++++.+..++..+-... | +.+..+++.|.+++..|+|.+|.+.|+.++..+|.+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~-----p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELD-----P--DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhC-----c--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 3568999999999988775543321 1 2356778899999999999999999999999999654
No 22
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.90 E-value=0.18 Score=37.15 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=50.1
Q ss_pred HHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 180 FKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
-..|++.|+++-|...++.+-... | +-...+|.+|.+++..+++.+|.+.+..|....|.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-----P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-----P--DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-----T--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467899999999999998766532 2 246789999999999999999999999999988853
No 23
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.47 E-value=0.2 Score=32.00 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.5
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
-.|..|..++..++|.+|.++++.|++..|.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4688999999999999999999999998875
No 24
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.71 E-value=0.93 Score=44.54 Aligned_cols=126 Identities=13% Similarity=0.159 Sum_probs=74.3
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCC---------------------C----------CCCCcchhhHHhhh
Q psy9768 171 GMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQY---------------------K----------DKSSLSQQITYKYY 219 (406)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~---------------------~----------~~~~~~~~vty~YY 219 (406)
+-+-...+...+|.++|++++++..++++....- . +.++.+ +.-..-
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t--~~~lng 206 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST--PKLLNG 206 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S--HHHHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC--HHHHHH
Confidence 4456777889999999999999999999864310 0 122221 222344
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCC--hhhhchhc-hhhhHHHHHHHHhCCHH
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPT--RELLDKYD-LLQLWDVTVAVKGGQIN 296 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~--~~ll~~~~-l~~y~~l~~aik~Gnl~ 296 (406)
++..++..++|.+|++.|..|+..-|. -.-.|.-+|.+..++|+=+. .+++++-. ..+-.|++..+..-+ .
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~-----~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~-~ 280 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPN-----DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKE-A 280 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CC-----HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHH-H
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHH-H
Confidence 566688888888888888888764332 23467778888888888543 23333321 123345555554332 4
Q ss_pred HHHHHHHH
Q psy9768 297 QLSDAMTK 304 (406)
Q Consensus 297 ~f~~~l~~ 304 (406)
.||++..+
T Consensus 281 ~FD~~~~k 288 (290)
T PF04733_consen 281 EFDRAVAK 288 (290)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 66666554
No 25
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.31 E-value=0.76 Score=34.97 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCC--cchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHh
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSS--LSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRC 244 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~--~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 244 (406)
+....+.+-.+|+++|+++.|...++..-.- ...++ ..+.+...+-+|.++-..|++.+|.+++++|++.+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI--EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4456688889999999999998876543221 11122 23558888999999999999999999999999865
No 26
>KOG1498|consensus
Probab=89.18 E-value=12 Score=38.12 Aligned_cols=204 Identities=12% Similarity=0.134 Sum_probs=119.3
Q ss_pred HHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc-cchHHH-HHHHH
Q psy9768 180 FKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK-SSKKNK-RLILI 257 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~-~~~~nk-~~IL~ 257 (406)
++.+.--+.+-.+.-+-|.|+..-+.+.--.+....|++-+=++++.++.|-++..++..-+. .|. .....| ..+|.
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~-t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYD-TGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhc-ccccccChhhhhhhhh
Confidence 444544455555555555555332211111233355555566678889999999988776555 222 111111 11221
Q ss_pred HHHHHHHhcCCCCCh-hhhch----h---chhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHH-------HHHhhH
Q psy9768 258 YLVPVKMLLGFMPTR-ELLDK----Y---DLLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYL-------ILEKLK 322 (406)
Q Consensus 258 yLIp~~lllG~~P~~-~ll~~----~---~l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl-------~lerlr 322 (406)
-.+...++.-+-|-. +++.+ - ++..|..+++.+-+|-+..|...-+.+++.+...+.+. -.+-|+
T Consensus 257 ~iv~f~~LAp~dneQsdll~~is~dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~~~~gek~~~dL~ 336 (439)
T KOG1498|consen 257 SIVSFCVLAPHDNEQSDLLARISNDKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDGGEEGEKRWSDLK 336 (439)
T ss_pred hheeEEeecCCCcHHHHHHHHHhcccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccccchhhhHHHHHH
Confidence 111111111111111 12211 1 12348899999999999999988888888887774332 122222
Q ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcC
Q psy9768 323 MITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSK 392 (406)
Q Consensus 323 ~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk 392 (406)
.-++-.=+|-+... +++||+..+..-+ +.+.+|+|-.+++|+..|.+.++|+...+.+-+-+
T Consensus 337 ~RIiEHNiRiiA~y--YSrIt~~rl~eLL------dl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k 398 (439)
T KOG1498|consen 337 LRIIEHNIRIIAKY--YSRITLKRLAELL------DLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQK 398 (439)
T ss_pred HHHHHHHHHHHHHH--HhhccHHHHHHHh------CCCHHHHHHHHHHHHhccceEEEecCCCceEEEEe
Confidence 22332233333322 4899999988777 45789999999999999999999999999877754
No 27
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=89.16 E-value=2.2 Score=31.24 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
....+-.+|...++++.+...+...-... |.. ....+..|.+++..+++.+|.+++..+++.+|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELD-----PDN--AKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----Ccc--hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 34556677888899998888776543321 111 15678899999999999999999999998776
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=88.76 E-value=2.4 Score=35.45 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccch
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSK 249 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 249 (406)
...+-.+|++.++++.+...+....... |. -...+|+.|.++...+++.+|...|..|++.+|....
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALAAALD-----PD--DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3455678889999999988776543221 11 2466799999999999999999999999999987653
No 29
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=88.14 E-value=3.3 Score=30.24 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=47.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+-.+|++.|+++.+...+..+-.. .|... ...++.|.++...+++.+|.+++..+....|...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 68 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL-----DPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA 68 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc-----CCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3456788899999988887654322 11111 5678899999999999999999999998777544
No 30
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.90 E-value=0.87 Score=35.41 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=42.2
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHH
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFA 240 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A 240 (406)
+-.+||+.|+++.|-.+++..+.. ...+..+|..|+.++-.++|.+|.++|.+|
T Consensus 31 la~~~~~~~~y~~A~~~~~~~~~~--------~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQKLKLD--------PSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHCHTHH--------HCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHhCCC--------CCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 778899999999999888762211 112566777799999999999999999876
No 31
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.84 E-value=0.7 Score=28.77 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=28.2
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+|.+|+++...+++.+|.+.|+......|.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999998863
No 32
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=87.70 E-value=2.4 Score=31.25 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhc-cHHHHHHHHHHHHHHhc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDS-DYKTANEYLTFAFQRCH 245 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~-~~~~A~~~L~~A~~~c~ 245 (406)
..+=.+|++.++++-+...++ +++-.| ..+..+|.+|..++..+ ++.+|.+++..|+..-|
T Consensus 7 ~~~g~~~~~~~~~~~A~~~~~~ai~~~p--------~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 7 YNLGQIYFQQGDYEEAIEYFEKAIELDP--------NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHST--------THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 344567888888888877664 344321 22457788888888888 78888888888887543
No 33
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=87.64 E-value=3.6 Score=35.69 Aligned_cols=78 Identities=9% Similarity=-0.033 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc--hHHH
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS--KKNK 252 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~nk 252 (406)
....+-.++.++|+++-+-..+...-...+ +-...+|.+|..+...|++.+|.+.+..|+..+|... ..++
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-------~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALMLDA-------SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 335566678889999999888765433211 2246789999999999999999999999999999763 4667
Q ss_pred HHHHHHH
Q psy9768 253 RLILIYL 259 (406)
Q Consensus 253 ~~IL~yL 259 (406)
..++.+|
T Consensus 133 ~~~~~~l 139 (144)
T PRK15359 133 QNAQIMV 139 (144)
T ss_pred HHHHHHH
Confidence 6666554
No 34
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.41 E-value=0.96 Score=28.57 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=27.7
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
.+|-.|.++...+++.+|.++|..|++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 468899999999999999999999999877
No 35
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.72 E-value=1.8 Score=31.97 Aligned_cols=34 Identities=24% Similarity=0.306 Sum_probs=30.5
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+-.|..++..++|.+|.++|+.|++.+|.+.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~ 37 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA 37 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 4567899999999999999999999999988755
No 36
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=82.99 E-value=12 Score=34.05 Aligned_cols=134 Identities=10% Similarity=0.159 Sum_probs=73.5
Q ss_pred hhHHhhhhhhhhhhhc---cHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHhcCCCCChhh-hchhc-------h
Q psy9768 213 QITYKYYVGRKAMFDS---DYKTANEYLTFAFQRCHKS-SKKNKRLILIYLVPVKMLLGFMPTREL-LDKYD-------L 280 (406)
Q Consensus 213 ~vty~YY~Gr~~~~~~---~~~~A~~~L~~A~~~c~~~-~~~nk~~IL~yLIp~~lllG~~P~~~l-l~~~~-------l 280 (406)
-+.-+-..+|+++..+ +|.+....|...+...... ..+|+..+.-|.+...+..+..|.... +...+ .
T Consensus 55 ~i~v~E~~ar~~i~~~d~~qf~~c~~~L~~lY~~~~~~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~ 134 (204)
T PF03399_consen 55 AIKVYERIARFAIESGDLEQFNQCLSQLKELYDDLRDLPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPY 134 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHH
Confidence 4555566667766554 4555556665555554111 235666777776665554443443211 11111 1
Q ss_pred hhh-HHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHH-HHHHhhHHHHHHHHHHHHHhcCCCc-cccHHHHHHHhc
Q psy9768 281 LQL-WDVTVAVKGGQINQLSDAMTKHQTFFIKCGIY-LILEKLKMITYRNFYNIHKDINKNS-VVELQQFLQALH 352 (406)
Q Consensus 281 ~~y-~~l~~aik~Gnl~~f~~~l~~~~~~f~~~gly-l~lerlr~lv~rnL~kkv~~~~~~~-~i~l~~~~~al~ 352 (406)
..+ ..+..|+.+||...|=+.+++.+.......+. ..+.++|..+++.+.+- +. .||++.+..-|.
T Consensus 135 i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~~~~~~iR~~al~~i~~a------y~~~i~l~~l~~~L~ 203 (204)
T PF03399_consen 135 IQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLMERFFNRIRLRALQSISKA------YRSSIPLSFLAELLG 203 (204)
T ss_dssp HHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHGGGHHHHHHHHHHHHHHH------S-T-EEHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCCHHHHHHHcC
Confidence 123 38889999999999999994444444444343 35788888888777662 23 499988877653
No 37
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=82.50 E-value=2.1 Score=32.45 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=30.0
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEe
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYIS 382 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIs 382 (406)
..+++++.++.-| +++.+.||.+|.-||.+|+|+-.-.
T Consensus 12 ~~~~S~~eLa~~~------~~s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 12 RGRVSLAELAREF------GISPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp S-SEEHHHHHHHT------T--HHHHHHHHHHHHCCTSCEEEEE
T ss_pred cCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCCcEEEecC
Confidence 5789999998887 4688999999999999999984443
No 38
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=81.30 E-value=21 Score=33.94 Aligned_cols=135 Identities=14% Similarity=0.154 Sum_probs=82.0
Q ss_pred HHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy9768 181 KVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLV 260 (406)
Q Consensus 181 kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLI 260 (406)
..+++-|+++.+...++.+...-+.+ |..+.. .|.+|..++-.++|.+|...++..++..|.+.. ..-++-.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s--~~a~~a--~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~--~~~a~Y~~g 113 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFG--PYSQQV--QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN--IDYVLYMRG 113 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCC--hHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc--hHHHHHHHH
Confidence 34577899999988888876542211 233333 579999999999999999999999999997642 222222222
Q ss_pred HHHHhcC------CC--CC---------------hhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhH----HHHHHhc
Q psy9768 261 PVKMLLG------FM--PT---------------RELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQ----TFFIKCG 313 (406)
Q Consensus 261 p~~lllG------~~--P~---------------~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~----~~f~~~g 313 (406)
-+.+-+| .. |. ..++++||-.+|.+..+. -+......|.+|| .++.++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~----rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATK----RLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222222 11 11 124456666666655542 1334455566665 4788888
Q ss_pred HHHH-HHhhHHHH
Q psy9768 314 IYLI-LEKLKMIT 325 (406)
Q Consensus 314 lyl~-lerlr~lv 325 (406)
-|.. +.|.+.++
T Consensus 190 ~y~AA~~r~~~v~ 202 (243)
T PRK10866 190 AYVAVVNRVEQML 202 (243)
T ss_pred chHHHHHHHHHHH
Confidence 8863 56665543
No 39
>KOG1076|consensus
Probab=80.96 E-value=86 Score=34.55 Aligned_cols=215 Identities=18% Similarity=0.289 Sum_probs=139.1
Q ss_pred ccchhcHHHHH--HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHH---hhhhhhhhhhhccHHHHHHHHHHH
Q psy9768 166 DSKKWGMLPFV--NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITY---KYYVGRKAMFDSDYKTANEYLTFA 240 (406)
Q Consensus 166 ~sKk~g~~~l~--n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty---~YY~Gr~~~~~~~~~~A~~~L~~A 240 (406)
.-|..+|+.=+ --|-.-+++-..+-|+..+-.+|....+ +-|+-| .=-+|.++|-+|-..+|+.+|+.=
T Consensus 483 r~rtRAmLchIYh~AL~d~f~~ARDlLLMSHlQdnI~h~D~------stQIL~NRtmvQLGLCAFR~Gmi~EaH~~L~dl 556 (843)
T KOG1076|consen 483 RLRTRAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQHADI------STQILFNRTMVQLGLCAFRQGMIKEAHQCLSDL 556 (843)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhccCh------hHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34555544433 2467788889999999999999986522 222222 235799999999999999998875
Q ss_pred HHHhc---------------ccc----------------hHHHHHHH-HHHHHHHHhcC-------------CCCChh--
Q psy9768 241 FQRCH---------------KSS----------------KKNKRLIL-IYLVPVKMLLG-------------FMPTRE-- 273 (406)
Q Consensus 241 ~~~c~---------------~~~----------------~~nk~~IL-~yLIp~~lllG-------------~~P~~~-- 273 (406)
..--+ +.. .-|.+++= .||+ |+||+- ++-|+.
T Consensus 557 ~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEcVyLt-caMLlEIP~MAA~~~d~Rrr~iSk~fr 635 (843)
T KOG1076|consen 557 QSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLECVYLT-CAMLLEIPYMAAHESDARRRMISKSFR 635 (843)
T ss_pred HhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHHHHHH-HHHHHhhhHHhhhhhhhhcccccHHHH
Confidence 54211 111 12333332 4554 566642 111222
Q ss_pred -hhchhch----------hhh-HHHHHHHHhCCHHHHHHHHHHh-HHH--HHHhcHH--HHHHhhHHHHHHHHHHHHHhc
Q psy9768 274 -LLDKYDL----------LQL-WDVTVAVKGGQINQLSDAMTKH-QTF--FIKCGIY--LILEKLKMITYRNFYNIHKDI 336 (406)
Q Consensus 274 -ll~~~~l----------~~y-~~l~~aik~Gnl~~f~~~l~~~-~~~--f~~~gly--l~lerlr~lv~rnL~kkv~~~ 336 (406)
.|+.++. .+| .--.+|++.||++.-.+.+-.+ ..| |-..... .+.+|++.--+|+.+=.....
T Consensus 636 r~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEEsLRTYLftYss~ 715 (843)
T KOG1076|consen 636 RQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEESLRTYLFTYSSV 715 (843)
T ss_pred HHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2333321 112 2446899999999988855553 333 3333332 234788887777766544333
Q ss_pred CCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCC
Q psy9768 337 NKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDP 395 (406)
Q Consensus 337 ~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~p 395 (406)
+..++++.++.-+ |++...|..|+.+||.+-=|-+.++...+|+|+-+..|
T Consensus 716 --Y~SvSl~~LA~mF------dLp~~~VhsIiSkmiineEl~AslDqpt~~iv~hrvE~ 766 (843)
T KOG1076|consen 716 --YDSVSLAKLADMF------DLPEPKVHSIISKMIINEELHASLDQPTQCIVMHRVEP 766 (843)
T ss_pred --hhhccHHHHHHHh------CCCchhHHHHHHHHHHHHHhhhccCCCcceEEEeeccc
Confidence 4788998888887 56778999999999999999999999999999987654
No 40
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=79.73 E-value=2.4 Score=28.82 Aligned_cols=32 Identities=13% Similarity=-0.083 Sum_probs=28.8
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+-+|+.+.-.|++.+|.+.|+.+++.+|.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 35679999999999999999999999999764
No 41
>KOG2300|consensus
Probab=79.44 E-value=66 Score=34.04 Aligned_cols=134 Identities=19% Similarity=0.103 Sum_probs=82.2
Q ss_pred hhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 169 KWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..-..+.--.+--+|.+.++..-...++.+|...+-.+..+......++|-.|.+++.+++|.+|...|.+-++... +
T Consensus 400 ~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman--a 477 (629)
T KOG2300|consen 400 IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN--A 477 (629)
T ss_pred HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--h
Confidence 33345555556678999888887777777766433223333455577889999999999999999999999999762 3
Q ss_pred hHHHHHHHHHHHHHHH---hc--------CCCCChhhhchhc--------hhhhHHHHHHHHhCCHHHHHHHHHH
Q psy9768 249 KKNKRLILIYLVPVKM---LL--------GFMPTRELLDKYD--------LLQLWDVTVAVKGGQINQLSDAMTK 304 (406)
Q Consensus 249 ~~nk~~IL~yLIp~~l---ll--------G~~P~~~ll~~~~--------l~~y~~l~~aik~Gnl~~f~~~l~~ 304 (406)
-.+-|+.--+|+.... .+ |-.|+-++-+|-+ ...|.+|-+|........-.++..+
T Consensus 478 ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 478 EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3344443333333322 23 3356666555532 2246677776644224444444443
No 42
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=76.65 E-value=47 Score=28.38 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
+++|...+....... .| +..+...- -.|-++|...|+++-+...+..+...+ -.-.+....|
T Consensus 64 ~~~A~~~l~~~~~~~-~d-----~~l~~~a~----l~LA~~~~~~~~~d~Al~~L~~~~~~~--------~~~~~~~~~G 125 (145)
T PF09976_consen 64 YDEAKAALEKALANA-PD-----PELKPLAR----LRLARILLQQGQYDEALATLQQIPDEA--------FKALAAELLG 125 (145)
T ss_pred HHHHHHHHHHHHhhC-CC-----HHHHHHHH----HHHHHHHHHcCCHHHHHHHHHhccCcc--------hHHHHHHHHH
Confidence 677777777655532 11 11222222 235688999999999999887644322 1234677899
Q ss_pred hhhhhhccHHHHHHHHHHHH
Q psy9768 222 RKAMFDSDYKTANEYLTFAF 241 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~ 241 (406)
.+++-.|++.+|.+.++.|+
T Consensus 126 di~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 126 DIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999998874
No 43
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=76.10 E-value=3.8 Score=26.63 Aligned_cols=29 Identities=28% Similarity=0.331 Sum_probs=23.9
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 218 YYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 218 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
..+|.++.-.|+|.+|.+.+..|+..+..
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 46899999999999999999998865543
No 44
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.59 E-value=3.4 Score=23.89 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=25.8
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
..+-.|..++..+++.+|..+++.|+..-|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 457789999999999999999999987654
No 45
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=75.32 E-value=17 Score=32.16 Aligned_cols=74 Identities=11% Similarity=-0.116 Sum_probs=54.9
Q ss_pred hhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 169 KWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 169 k~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+.+.......+...|.+.|+++-+...++.. +..+. ..+.....+-+|.++...++|.+|.+++..|+...|..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ 105 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4444445567778899999999988877543 32211 11235678999999999999999999999999987654
No 46
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=74.80 E-value=7.4 Score=29.35 Aligned_cols=34 Identities=15% Similarity=0.023 Sum_probs=29.0
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
+.++..+.+|.++...++|.+|.+++..|+..+-
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 36 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEE 36 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999844
No 47
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=69.31 E-value=15 Score=29.36 Aligned_cols=67 Identities=18% Similarity=0.045 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcc-hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLS-QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~-~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+-.+|++.++++.+...++.+-.. +|.. ......|..|.++.-.+++.+|..++..++..-|.+.
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKK-----YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHH-----CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 34667799999999999988765432 1221 1234578999999999999999999999999988653
No 48
>KOG0543|consensus
Probab=68.67 E-value=40 Score=34.58 Aligned_cols=101 Identities=12% Similarity=0.133 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHH--HHHHHHHHHHhcCChhhH-HHHHHHhccCCCCCCCCcchhhHH
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLP--FVNQLFKVYFRISKLHLM-KPLIRAIESSQYKDKSSLSQQITY 216 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~--l~n~l~kiYfkl~~~~l~-~~~~~~i~~~~~~~~~~~~~~vty 216 (406)
...+.|+..-.++-...-.++..+.+++++...+- .-+.+--+|.|++.+.-| +..-++++-.+. + |.=
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~------N--~KA 293 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN------N--VKA 293 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC------c--hhH
Confidence 34566666555555555455555666776666443 345677889999999855 334455443322 1 344
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+|=.|+.++-.++|..|...|+.|...-|.+.
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 67899999999999999999999999988653
No 49
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=67.95 E-value=36 Score=31.33 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcc-hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLS-QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~-~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
-.+-..|++.++++.+...+..+-.. .|.+ ....-+|..|..++-.+++.+|.+.+..+++..|.+.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 34445688999999998877655332 2222 2223468999999999999999999999999999655
No 50
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=65.96 E-value=23 Score=30.60 Aligned_cols=79 Identities=11% Similarity=0.087 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHhH-HHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCC
Q psy9768 281 LQLWDVTVAVKGGQINQLSDAMTKHQ-TFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHI 359 (406)
Q Consensus 281 ~~y~~l~~aik~Gnl~~f~~~l~~~~-~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~ 359 (406)
..-..|.+++-+||..+|-++++.+. ...+...+-.+.+.+|.-+..- +.++ ++.|+++.+...|.+
T Consensus 42 ~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iR~~i~~~-i~~a-----Y~sIs~~~la~~Lg~------ 109 (143)
T PF10075_consen 42 KAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFEDTIRERIAHL-ISKA-----YSSISLSDLAEMLGL------ 109 (143)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHHHHHHHHHHH-HHHH------SEE-HHHHHHHTTS------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-HHHH-----HhHcCHHHHHHHhCC------
Confidence 34568899999999999999998752 1222222223345555544432 2332 489999999988843
Q ss_pred CHHHHHHHHHHH
Q psy9768 360 DLEDTHCLLCNL 371 (406)
Q Consensus 360 ~~devEcilanL 371 (406)
+.+|++-++.+.
T Consensus 110 ~~~el~~~~~~~ 121 (143)
T PF10075_consen 110 SEEELEKFIKSR 121 (143)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHHHc
Confidence 468888887766
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=63.67 E-value=34 Score=33.93 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+.+..+|.+.|+++-+...++.+...... .+......|.+-+|..++-.+++.+|.+.+.+|+...|..
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 213 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--SLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence 4566778899999999998888776443211 1122345666678889999999999999999999987653
No 52
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.30 E-value=1.7e+02 Score=29.30 Aligned_cols=95 Identities=13% Similarity=0.110 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHH
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNK 252 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk 252 (406)
.++.-.|-++|-..|+.+-|..++=++.- .....+..|+.|.|--=.=|+.+..+||..|...-..-.+..-+...-.-
T Consensus 131 ariT~~L~~ikee~Gdi~sA~Dilcn~pV-ETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~s 209 (439)
T COG5071 131 ARLTQLLSQIKEEQGDIKSAQDILCNEPV-ETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQS 209 (439)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHhcCch-hhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHH
Confidence 45778889999999999999888754321 11235677889999888888899999999998776555555443322222
Q ss_pred HHHHHHHHHHHHhcCC
Q psy9768 253 RLILIYLVPVKMLLGF 268 (406)
Q Consensus 253 ~~IL~yLIp~~lllG~ 268 (406)
..+=-|=+.|++-+|+
T Consensus 210 lKlkyYeL~V~i~Lh~ 225 (439)
T COG5071 210 LKLKYYELKVRIGLHD 225 (439)
T ss_pred HHHHHHHHhheeeccc
Confidence 3333344455555554
No 53
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=63.27 E-value=8.1 Score=28.14 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=41.0
Q ss_pred HhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 184 FRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 184 fkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
++.|+++-+..+++.+-.. .|.. ...++.+|.+++-.|++.+|.+.|..+....|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~-----~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-----NPDN--PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-----TTTS--HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccCHHHHHHHHHHHHHH-----CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 4567777777777654322 2333 3456689999999999999999999999887763
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=62.10 E-value=49 Score=29.06 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-.+|++.|+++-+...+......+. . .......+..|..+...+++.+|...+..|+...|..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL---Y--PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc---c--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 344556778999999999888866543211 1 1223445668999999999999999999999986653
No 55
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=61.78 E-value=47 Score=30.01 Aligned_cols=91 Identities=19% Similarity=0.198 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
+++|.+...++..-|.+- .-.+-+.-.++++.+-.++...+.+.+...++..-. .-+..-+.+.+=|.|
T Consensus 52 ~~~A~k~y~~~~~~~~~~----------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrlk~~~g 120 (177)
T PF10602_consen 52 LEEALKAYSRARDYCTSP----------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRLKVYEG 120 (177)
T ss_pred HHHHHHHHHHHhhhcCCH----------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHH
Confidence 455555555555555432 124445557789999999999999988777654211 122344567899999
Q ss_pred hhhhhhccHHHHHHHHHHHHHH
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~ 243 (406)
..++..++|.+|-+.|..+...
T Consensus 121 L~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 121 LANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHhchHHHHHHHHHccCcC
Confidence 9999999999999988777543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=61.48 E-value=66 Score=28.21 Aligned_cols=68 Identities=10% Similarity=-0.032 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
......+-..|++.|+++.+...+...-... |. .....+..|.++...+++.+|.+.+..|+...|..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 98 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-----PD--DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3344455677888888888777665432211 11 13455667888888888888888888888876654
No 57
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=61.16 E-value=10 Score=24.43 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=23.7
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
..-+|..+...++|.+|.+.+.+|+..+-.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 456788999999999999999999987653
No 58
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=60.14 E-value=39 Score=26.76 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=47.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+-..+++.|+++-+...+..+....+.+ + ....-+|..|+.++-.++|.+|...+..+...+|..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKS--T--YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS 72 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCc--c--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence 34456788899998877776654321111 1 112346789999999999999999999999988754
No 59
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=59.00 E-value=69 Score=26.38 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-..|++.++++-+...+..+-... |. -....+.+|..++..++|.+|.+.+..|....|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-----PY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-----CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455566888999999988887654321 11 13567889999999999999999999998876654
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=58.40 E-value=25 Score=33.53 Aligned_cols=67 Identities=10% Similarity=0.087 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+.+|.+.++.+-+..+++.+...+. . .+...|.+..|.++.-.|+..+|.+.+..|++.-|.+.
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPA---A--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccC---C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 4466789999999999999988764211 1 24467888999999999999999999999999988644
No 61
>KOG2002|consensus
Probab=57.69 E-value=2.3e+02 Score=32.51 Aligned_cols=159 Identities=12% Similarity=0.137 Sum_probs=92.8
Q ss_pred ccCCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCc----cchHHHHH-------------------
Q psy9768 52 LEHPIFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDN----WLLPVVQT------------------- 108 (406)
Q Consensus 52 ~~~~~~evv~~~lk~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----W~lp~l~~------------------- 108 (406)
+...-+.+....-|++-+.+.+||..|...|..++ +.-...+... | .+++.
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al----~inp~~~aD~rIgig--~Cf~kl~~~~~a~~a~~ralqLdp 230 (1018)
T KOG2002|consen 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKAL----RINPACKADVRIGIG--HCFWKLGMSEKALLAFERALQLDP 230 (1018)
T ss_pred HhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHH----hcCcccCCCccchhh--hHHHhccchhhHHHHHHHHHhcCh
Confidence 33445566666778888888888888887776633 2221111111 2 12221
Q ss_pred -HHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcC
Q psy9768 109 -VSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRIS 187 (406)
Q Consensus 109 -~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~ 187 (406)
.+..++.+|...- . ....+...++...++++|+.= ..+| .+.|.|-..||--+
T Consensus 231 ~~v~alv~L~~~~l-~------------~~d~~s~~~~~~ll~~ay~~n--~~nP-----------~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 231 TCVSALVALGEVDL-N------------FNDSDSYKKGVQLLQRAYKEN--NENP-----------VALNHLANHFYFKK 284 (1018)
T ss_pred hhHHHHHHHHHHHH-H------------ccchHHHHHHHHHHHHHHhhc--CCCc-----------HHHHHHHHHHhhcc
Confidence 2222333332211 1 112255777888899999862 1122 14566666777778
Q ss_pred ChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 188 KLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 188 ~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
++..|-.+--.. .++ +..+....=.|.+||.+=-+|||.+|..++..|..--+..
T Consensus 285 dy~~v~~la~~ai~~t-----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNT-----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred cHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 887776654332 221 2223333445999999999999999999999999855544
No 62
>PRK11189 lipoprotein NlpI; Provisional
Probab=56.81 E-value=17 Score=35.47 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=36.2
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIY 258 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~y 258 (406)
..-+||+|+.+...|++.+|..++..|....|.+....+-..+..
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345799999999999999999999999999887765554444433
No 63
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=56.24 E-value=50 Score=32.75 Aligned_cols=67 Identities=10% Similarity=0.008 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
...+-.+|++.|+++-+..+++.+...+. .+........+.+|..++..|+|.+|.+.|..+....|
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 138 (389)
T PRK11788 72 HLALGNLFRRRGEVDRAIRIHQNLLSRPD---LTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGD 138 (389)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCc
Confidence 34567788888998888888776554321 12223345667778888888888888888888877544
No 64
>KOG2300|consensus
Probab=56.01 E-value=2.8e+02 Score=29.57 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=88.8
Q ss_pred cchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHHHhcCCCCC-hhhhch------hc
Q psy9768 210 LSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS---KKNKRLILIYLVPVKMLLGFMPT-RELLDK------YD 279 (406)
Q Consensus 210 ~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~---~~nk~~IL~yLIp~~lllG~~P~-~~ll~~------~~ 279 (406)
..+-..-+|-.|.+.+.-+.|+.|+.||..|.+..+... .-|-.+...|| -.|+.-. .+.++. +.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL-----~~~~~ed~y~~ld~i~p~nt~s 437 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL-----RIGDAEDLYKALDLIGPLNTNS 437 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH-----HhccHHHHHHHHHhcCCCCCCc
Confidence 467778899999999999999999999999999866532 12333333333 2333211 111211 11
Q ss_pred -----hh---hhHHHHHHHHhCCHHHHHHHHH------HhHHHHHHhcHHHHHHhhHHHHH------HHHHHHHHhcCC-
Q psy9768 280 -----LL---QLWDVTVAVKGGQINQLSDAMT------KHQTFFIKCGIYLILEKLKMITY------RNFYNIHKDINK- 338 (406)
Q Consensus 280 -----l~---~y~~l~~aik~Gnl~~f~~~l~------~~~~~f~~~glyl~lerlr~lv~------rnL~kkv~~~~~- 338 (406)
+. .|..=.-|+++|++..-...+. ++|+.+.-.+.++++-..-..+. ||.+|-...+.+
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 11 1444456889999987766654 47889998999988777677777 999998887753
Q ss_pred CccccHHHHHH
Q psy9768 339 NSVVELQQFLQ 349 (406)
Q Consensus 339 ~~~i~l~~~~~ 349 (406)
-+-||+..+..
T Consensus 518 i~Di~vqLws~ 528 (629)
T KOG2300|consen 518 IPDIPVQLWSS 528 (629)
T ss_pred CCCchHHHHHH
Confidence 35566554433
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=55.41 E-value=1.7e+02 Score=26.78 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=28.8
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+.+..|.+++..|++.+|...+..+...+|.+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 45688999999999999999999999999874
No 66
>KOG4234|consensus
Probab=54.28 E-value=22 Score=33.43 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=26.6
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhcccchH
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKSSKK 250 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 250 (406)
-|--.|-+|+|.+|...+++|+..||..+..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e 131 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTE 131 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHH
Confidence 3555688899999999999999999987763
No 67
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=54.13 E-value=19 Score=25.98 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=27.7
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+.||++.-+.--++|.+|.++...+++.=|..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 68999999999999999999999999987753
No 68
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=54.12 E-value=40 Score=32.58 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=60.6
Q ss_pred HhcCChhhHHHHHHHhccCC-CCCCCCcchhhHHhhhhhhhhhhhc-cHHHHHHHHHHHHHHhcc-c--------chHHH
Q psy9768 184 FRISKLHLMKPLIRAIESSQ-YKDKSSLSQQITYKYYVGRKAMFDS-DYKTANEYLTFAFQRCHK-S--------SKKNK 252 (406)
Q Consensus 184 fkl~~~~l~~~~~~~i~~~~-~~~~~~~~~~vty~YY~Gr~~~~~~-~~~~A~~~L~~A~~~c~~-~--------~~~nk 252 (406)
.+.|+++++..++..++.-. ..+.-.....+.=.|-.|+-..-++ +|.+|-.+|+.|++.|.. . ...-|
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999988776532 2222223555667788999999999 999999999999999843 1 11235
Q ss_pred HHHHHHHHHHHHhcCC
Q psy9768 253 RLILIYLVPVKMLLGF 268 (406)
Q Consensus 253 ~~IL~yLIp~~lllG~ 268 (406)
-.||..|+-+.+-.|.
T Consensus 84 ~~iL~~La~~~l~~~~ 99 (278)
T PF08631_consen 84 LSILRLLANAYLEWDT 99 (278)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5688888776655443
No 69
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=53.37 E-value=57 Score=29.85 Aligned_cols=78 Identities=13% Similarity=0.076 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHHHhccCC-----CC------C-----CCCcchhhHHhhhhhhhhhhhccHHHHH
Q psy9768 171 GMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQ-----YK------D-----KSSLSQQITYKYYVGRKAMFDSDYKTAN 234 (406)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~-----~~------~-----~~~~~~~vty~YY~Gr~~~~~~~~~~A~ 234 (406)
++..+.....-.||++|+++....--..+.+.. .. . .-...+-....+.+|++++..+++.+|.
T Consensus 14 ~~~~~~~~~~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 14 LTILMVFLCVGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456667778889999999987655443322110 00 0 0011233567899999999999999999
Q ss_pred HHHHHHHHHhcccc
Q psy9768 235 EYLTFAFQRCHKSS 248 (406)
Q Consensus 235 ~~L~~A~~~c~~~~ 248 (406)
+.+..|++.-|.+.
T Consensus 94 ~a~~~Al~l~P~~~ 107 (198)
T PRK10370 94 LAYRQALQLRGENA 107 (198)
T ss_pred HHHHHHHHhCCCCH
Confidence 99999999877643
No 70
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=52.50 E-value=71 Score=32.16 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+...|.++|+++.+...+.. ++-.| . ....+|.+|..++..|+|.+|..+|..|+..-|.+.
T Consensus 40 ~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 40 ADRAQANIKLGNFTEAVADANKAIELDP------S--LAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc------C--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 4566778999999999777654 33222 1 234567889999999999999999999999887654
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=52.20 E-value=2.8e+02 Score=30.99 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccC-C-------CCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESS-Q-------YKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~-~-------~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...++..|.+.++++-+...+..+... | .....|..+.....+..|.++...+++.+|.+.|..+...-|.+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n 392 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN 392 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 345566788999999998888776554 3 12345666777888999999999999999999999999987765
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCh-hhhc----hhch---hhhHHHHHHHHhCCHHHHHHHHHHh
Q psy9768 248 SKKNKRLILIYLVPVKMLLGFMPTR-ELLD----KYDL---LQLWDVTVAVKGGQINQLSDAMTKH 305 (406)
Q Consensus 248 ~~~nk~~IL~yLIp~~lllG~~P~~-~ll~----~~~l---~~y~~l~~aik~Gnl~~f~~~l~~~ 305 (406)
. .++..+.-+.+-.|+.... +.++ ..|- ..+.....+++.|++..-++.+++-
T Consensus 393 ~-----~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 393 Q-----GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 2444555555555663321 1121 1111 1244555788888866655555543
No 72
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=52.10 E-value=3.4e+02 Score=29.40 Aligned_cols=65 Identities=14% Similarity=0.119 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+..+|.+.|+++-+..+++.+.... |... ...+..|.+++..++|.+|.+.+..|+...|..
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 736 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQH-----PKAA--LGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS 736 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-----cCCh--HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc
Confidence 3445566677777777777776655431 2222 234678999999999999999999999988765
No 73
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=51.22 E-value=1.9e+02 Score=26.29 Aligned_cols=77 Identities=9% Similarity=0.151 Sum_probs=52.5
Q ss_pred cchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 167 SKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 167 sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
.++...-.+.|. +-++.+-+++..|..++..++.-+.++ .-.-+++.+.||.|.+...+|+-.++.+....|+.-+.
T Consensus 123 ~~~~i~~il~N~-~~~~i~~~~~~~a~~~l~~l~~l~~~~-~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~ 199 (220)
T TIGR01716 123 YRRRVIQLLLNI-AVLLIEKNEFSYAQYFLEKLEKILDPE-DDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFD 199 (220)
T ss_pred hHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 344444444444 445556678899999999888754322 12237899999999998889887777777777776544
No 74
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=50.42 E-value=71 Score=32.90 Aligned_cols=95 Identities=17% Similarity=0.184 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhh
Q psy9768 143 ETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 143 e~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~G 221 (406)
.+|.+.++++... .+ .+ +-+++..-+.+.+.+++++|-.+.+.. +.+|. + ....|+++
T Consensus 217 ~~AI~ll~~aL~~-----~p---~d-----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-------~-f~~W~~La 275 (395)
T PF09295_consen 217 VEAIRLLNEALKE-----NP---QD-----SELLNLQAEFLLSKKKYELALEIAKKAVELSPS-------E-FETWYQLA 275 (395)
T ss_pred HHHHHHHHHHHHh-----CC---CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-------h-HHHHHHHH
Confidence 4667777776632 11 11 778888899999999999998887654 43321 1 24568899
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVK 263 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~ 263 (406)
+.|+..++|+.|-. |+..||-...+. +-.++-..|..
T Consensus 276 ~~Yi~~~d~e~ALl----aLNs~Pm~~~~~-k~~~~~~~p~~ 312 (395)
T PF09295_consen 276 ECYIQLGDFENALL----ALNSCPMLTYKD-KYKLKRPVPAK 312 (395)
T ss_pred HHHHhcCCHHHHHH----HHhcCcCCCCcc-chhhhcCCCcc
Confidence 99999999999985 677888654333 23444444443
No 75
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=50.20 E-value=95 Score=29.99 Aligned_cols=131 Identities=18% Similarity=0.204 Sum_probs=75.7
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCC-----------------------
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMP----------------------- 270 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P----------------------- 270 (406)
+.-.|=.|.-.+..|+|.+|.++|.......|-+... ++.+.-|+=..+-.|..+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 4456888888999999999999998888777754433 233333333333322221
Q ss_pred --------------C-------------hhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHhH----HHHHHhcHHHH-H
Q psy9768 271 --------------T-------------RELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKHQ----TFFIKCGIYLI-L 318 (406)
Q Consensus 271 --------------~-------------~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~~----~~f~~~glyl~-l 318 (406)
+ .+++++||-.+|.+-+++ .+..+...|..|| .++.++|-|+. +
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~----~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKA----RIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHH----HHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 1 113445555556555543 3456666676665 47888888874 5
Q ss_pred HhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccC
Q psy9768 319 EKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEG 356 (406)
Q Consensus 319 erlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~ 356 (406)
.|.+.++ +. +.-....+-.+..+..|+.-.|.
T Consensus 188 nR~~~v~-----e~-y~~t~~~~eaL~~l~eaY~~lgl 219 (254)
T COG4105 188 NRFEEVL-----EN-YPDTSAVREALARLEEAYYALGL 219 (254)
T ss_pred HHHHHHH-----hc-cccccchHHHHHHHHHHHHHhCC
Confidence 7766644 22 22122234455556667655554
No 76
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=49.64 E-value=36 Score=30.45 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=33.6
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc--chHHHHHHHHHH
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS--SKKNKRLILIYL 259 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~--~~~nk~~IL~yL 259 (406)
+-.||.|..++.-|+...|.+.|..|+..|... ...=|++.-.+|
T Consensus 104 ~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L 150 (157)
T PRK15363 104 QAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKML 150 (157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHH
Confidence 345899999999999999999999999999432 122344444444
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=49.14 E-value=40 Score=32.59 Aligned_cols=61 Identities=16% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHhcCChhhHHHHHHHhccCCCCCCCCcch-hhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 183 YFRISKLHLMKPLIRAIESSQYKDKSSLSQ-QITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 183 Yfkl~~~~l~~~~~~~i~~~~~~~~~~~~~-~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+++-++++-+-..++.+-. .+|.+. .-.-+|++|..++-.++|.+|..+|...+...|.+.
T Consensus 153 ~~~~~~y~~Ai~af~~fl~-----~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVK-----KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHhcCCHHHHHHHHHHHHH-----HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 3445788877666665433 233321 123469999999999999999999999999888654
No 78
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=49.02 E-value=33 Score=29.30 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=24.3
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
-+|.-.+.+|++.+|-.||..|+.-||.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 4677788899999999999999999997
No 79
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=48.70 E-value=46 Score=29.34 Aligned_cols=39 Identities=21% Similarity=0.160 Sum_probs=33.5
Q ss_pred CCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 208 SSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 208 ~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.+......++|..|..+...++|.+|..++..|+...+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 67 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED 67 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc
Confidence 445667788899999999999999999999999987553
No 80
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=47.35 E-value=55 Score=28.60 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
....+-.+|.+.|+++.+...+...-.................+..|+.+.-.+++..|...+.+|+..
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~ 142 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEY 142 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHH
Confidence 456678889999999999887755332211111222344555677777777899999888887777654
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=46.25 E-value=1.3e+02 Score=32.12 Aligned_cols=68 Identities=19% Similarity=0.049 Sum_probs=54.1
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 171 GMLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.++.+...+-+.|-++|+++-+-..|. +|+.+|.. |-+++..||++=..|++.+|.+.+..|=..-+.
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~--------~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL--------VELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 345566667788989999998877774 67766432 678899999999999999999999999775443
No 82
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.83 E-value=36 Score=20.82 Aligned_cols=28 Identities=11% Similarity=0.142 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccC
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESS 202 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~ 202 (406)
..|.+++.|.+.|+.+.+..+++.+...
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999988754
No 83
>PRK14574 hmsH outer membrane protein; Provisional
Probab=45.60 E-value=5.1e+02 Score=29.48 Aligned_cols=132 Identities=12% Similarity=0.026 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccC-CC-------CCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESS-QY-------KDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~-------~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..-||--|...++++-+..++..+... |. ....|..+..++.+-.+..+++.|++.+|++.|+......|-+
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n 449 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN 449 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 356888899999999999999988764 31 1346888999999999999999999999999999999998865
Q ss_pred chHHHHHHHHHHHHHHHhcCC-CCChh--hhch----hc---hhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcH
Q psy9768 248 SKKNKRLILIYLVPVKMLLGF-MPTRE--LLDK----YD---LLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGI 314 (406)
Q Consensus 248 ~~~nk~~IL~yLIp~~lllG~-~P~~~--ll~~----~~---l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~gl 314 (406)
.. ..+ . -..+...+ -|... .++. .+ ...+.....+...|++..-++.+++-...+-.+.-
T Consensus 450 ~~----l~~-~--~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 450 QN----LRI-A--LASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HH----HHH-H--HHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 42 111 1 12222222 23222 1111 11 12355667788888888888888766555555543
No 84
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=45.55 E-value=1.6e+02 Score=32.07 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+-.+|++.|+++.+..++..+-... |. .....++.|.+++..|++.+|.+.+..|+...|.+
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 226 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTAD-----PG--NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN 226 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-----CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 34566788899988888876654321 11 13466788888888899999999999888877654
No 85
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=45.15 E-value=40 Score=35.39 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=50.6
Q ss_pred cCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHH-HHHHH
Q psy9768 186 ISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYL-VPVKM 264 (406)
Q Consensus 186 l~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yL-Ip~~l 264 (406)
-...+.|..++..+.. .||.+ +-|.|+.||++..+++..+|-+.|+.|.... +..++-..+..|= .-+.+
T Consensus 246 ~~~~~~a~~lL~~~~~-----~yP~s--~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q--~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK-----RYPNS--ALFLFFEGRLERLKGNLEEAIESFERAIESQ--SEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCCHHHHHHHHHHHHH-----hCCCc--HHHHHHHHHHHHHhcCHHHHHHHHHHhccch--hhHHhHHHHHHHHHHHHHH
Confidence 3456678888876554 46655 6799999999999999999999999998532 2244444333332 22344
Q ss_pred hcCCCC
Q psy9768 265 LLGFMP 270 (406)
Q Consensus 265 llG~~P 270 (406)
++++.+
T Consensus 317 ~~~~w~ 322 (468)
T PF10300_consen 317 FQHDWE 322 (468)
T ss_pred HHchHH
Confidence 445443
No 86
>KOG1585|consensus
Probab=45.08 E-value=3e+02 Score=26.79 Aligned_cols=209 Identities=17% Similarity=0.147 Sum_probs=110.5
Q ss_pred ccCCHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHhcccCCCccch-----HHHHHHHHHHHHHHHHHhHHhh
Q psy9768 52 LEHPIFELVSAHLKCVQSIQ-ANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLL-----PVVQTVSLNLRLVSNKVDNKAL 125 (406)
Q Consensus 52 ~~~~~~evv~~~lk~~~~i~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~l-----p~l~~~~~~L~~~a~~~D~~~~ 125 (406)
..+.|+.-...|-|...+.. .+++.+|=+++.+.+ ++.+++ .+|.- .-...+.+++-.+....|-..-
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~----~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eK 96 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKAS----KGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEK 96 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHH----HHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 44678888888888877776 446666665554444 334443 44442 2222334444444444432221
Q ss_pred hccccCCCCC-CCcchhHHHHHHHHH------------HHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhH
Q psy9768 126 ASSIQDGNSG-AKPRDALETTTEMLM------------TCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLM 192 (406)
Q Consensus 126 ~~~~~~~~~~-~~~~~~le~~a~~i~------------~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~ 192 (406)
.+....+.|. +.....||+||+.+. +...+-..|. +-...+-+...+-++|.+++++.=+
T Consensus 97 As~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d-------r~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 97 ASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD-------RDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 1111112331 112246777777653 2333332222 2334566777778888888888766
Q ss_pred HHHHHHhccCCC-CCCCCcchhhHHhhhhhhh--hhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCC
Q psy9768 193 KPLIRAIESSQY-KDKSSLSQQITYKYYVGRK--AMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFM 269 (406)
Q Consensus 193 ~~~~~~i~~~~~-~~~~~~~~~vty~YY~Gr~--~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~ 269 (406)
...+....+... .+.++ -.|+=|.|.+ ++.-+||+.|+.++..+.. +
T Consensus 170 a~a~lKe~~~~~~~~~y~----~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q--------------------------i 219 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYN----SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ--------------------------I 219 (308)
T ss_pred HHHHHHhhhHHHHHhhcc----cHHHHHHHHHHHHhhHHHHHHHHHHhcchhc--------------------------C
Confidence 555433222100 01111 1356677754 6777889988875433222 2
Q ss_pred CChhhhchhchhhhHHHHHHHHhCCHHHHHHHHHHh
Q psy9768 270 PTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTKH 305 (406)
Q Consensus 270 P~~~ll~~~~l~~y~~l~~aik~Gnl~~f~~~l~~~ 305 (406)
|.+ +..-+-..-.+|..+.-.||...+.+++...
T Consensus 220 p~f--~~sed~r~lenLL~ayd~gD~E~~~kvl~sp 253 (308)
T KOG1585|consen 220 PAF--LKSEDSRSLENLLTAYDEGDIEEIKKVLSSP 253 (308)
T ss_pred ccc--cChHHHHHHHHHHHHhccCCHHHHHHHHcCh
Confidence 221 1111112356888899999999999988754
No 87
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.38 E-value=58 Score=27.84 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=36.4
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCC
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMP 270 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P 270 (406)
.+.+|..++..|+|.+|.+.|.++..+.+.... +......|.-+.+-.|++.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l--~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPEL--KPLARLRLARILLQQGQYD 102 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHH--HHHHHHHHHHHHHHcCCHH
Confidence 567999999999999999999999998754332 2233333444444456543
No 88
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=43.99 E-value=1.2e+02 Score=26.04 Aligned_cols=62 Identities=8% Similarity=-0.037 Sum_probs=48.1
Q ss_pred HHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+-..+++.|+++-+-..+.. +...|. ...+++-+|.++...|+|.+|...+..|+...|...
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQPW--------SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34577899999988776654 333221 246778899999999999999999999999888655
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=43.26 E-value=2.9e+02 Score=26.10 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=42.6
Q ss_pred chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCC
Q psy9768 211 SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGF 268 (406)
Q Consensus 211 ~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~ 268 (406)
......-++.|++|+-.++|..|-.-+.+.+++.|.+. ...-.|-+++-.-.-+|.
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~--~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQ--ATRDALPLMENAYRQLQL 227 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCc--hHHHHHHHHHHHHHHcCC
Confidence 44566778999999999999999999999999999754 345556666555444443
No 90
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=43.22 E-value=29 Score=24.95 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=25.9
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 218 YYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 218 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|=.|+.++-.++|.+|.+.|..+++.-|.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~ 30 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDN 30 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 346889999999999999999999987653
No 91
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=43.10 E-value=59 Score=29.96 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=31.9
Q ss_pred ccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcC
Q psy9768 340 SVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSK 392 (406)
Q Consensus 340 ~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk 392 (406)
-.++|.+++..+. +...++...+-.|..+|.|.|.|+...+.|-+|.
T Consensus 112 Kvv~ledla~~f~------l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~ 158 (188)
T PF09756_consen 112 KVVNLEDLAAEFG------LRTQDVINRIQELEAEGRLTGVIDDRGKFIYISE 158 (188)
T ss_dssp SEE-HHHHHHHH-------S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE---
T ss_pred ceeeHHHHHHHcC------CCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecH
Confidence 4688999988884 4668999999999999999999988665555554
No 92
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=42.99 E-value=44 Score=28.80 Aligned_cols=42 Identities=12% Similarity=0.265 Sum_probs=35.1
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCC
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAH 385 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~ 385 (406)
...++|+..+...+. ++...+-..+-+|...|.|+||-..-+
T Consensus 19 ~d~r~~~~eia~~lg------lS~~~v~~Ri~~L~~~GiI~~~~~~v~ 60 (154)
T COG1522 19 EDARISNAELAERVG------LSPSTVLRRIKRLEEEGVIKGYTAVLD 60 (154)
T ss_pred HhCCCCHHHHHHHHC------CCHHHHHHHHHHHHHCCceeeEEEEEC
Confidence 356799999999984 577899999999999999999854444
No 93
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=42.57 E-value=31 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=22.1
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
+|-+.+-.++|.+|.+.|..|+..
T Consensus 7 Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 7 LGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHH
Confidence 688899999999999999999985
No 94
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=42.22 E-value=2.2e+02 Score=33.44 Aligned_cols=69 Identities=16% Similarity=0.115 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+.+...+-.++++.++++.+...++..-... |.. ..-++.+|.+++..+++.+|.+++..|++.-|...
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-----P~~--~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-----NTD--SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 3444555678899999999988886544321 111 23456789999999999999999999999877654
No 95
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=40.56 E-value=1.9e+02 Score=27.86 Aligned_cols=47 Identities=11% Similarity=0.175 Sum_probs=32.1
Q ss_pred chhhhHH-HHHHHHhCCHHHHHHHHHHhHHHHHHhcHHH-HHHhhHHHH
Q psy9768 279 DLLQLWD-VTVAVKGGQINQLSDAMTKHQTFFIKCGIYL-ILEKLKMIT 325 (406)
Q Consensus 279 ~l~~y~~-l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl-~lerlr~lv 325 (406)
++..|.. |+.++.+|+...|....++++..+.++..|. .++++..+-
T Consensus 190 PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~y 238 (260)
T PF04190_consen 190 PLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLY 238 (260)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHH
Confidence 4455664 5789999999999999999998877765554 467766543
No 96
>PF13041 PPR_2: PPR repeat family
Probab=39.91 E-value=59 Score=22.28 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhccCCC
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRAIESSQY 204 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~ 204 (406)
...|.++..|++.|+++.|..+++.+.....
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~ 34 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGI 34 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 4578999999999999999999999987643
No 97
>PRK15331 chaperone protein SicA; Provisional
Probab=39.85 E-value=42 Score=30.27 Aligned_cols=37 Identities=14% Similarity=0.273 Sum_probs=31.3
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHH
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKR 253 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~ 253 (406)
.||.|..++.-++...|..+|..|..+|.....+.|-
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A 144 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKA 144 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHH
Confidence 5999999999999999999999999987755544443
No 98
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=39.83 E-value=24 Score=21.09 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred HhhhhhhhhhhhccHHHHHHHHH
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLT 238 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~ 238 (406)
..+.+|+.+...|++.+|..++.
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998874
No 99
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=39.72 E-value=1.1e+02 Score=32.99 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=22.7
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+|..|.+++..|+|.+|.+++..|+..-|..
T Consensus 400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 345667777777777777777777777766643
No 100
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.31 E-value=92 Score=25.28 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=56.3
Q ss_pred hHHHHHHHHhCCHHHHHHHHHH-----hHHHHHHhcHHHHHHhhHHHHHHHHHHHHHhc-CCCccccHHHHHHHhcccc-
Q psy9768 283 LWDVTVAVKGGQINQLSDAMTK-----HQTFFIKCGIYLILEKLKMITYRNFYNIHKDI-NKNSVVELQQFLQALHYVE- 355 (406)
Q Consensus 283 y~~l~~aik~Gnl~~f~~~l~~-----~~~~f~~~glyl~lerlr~lv~rnL~kkv~~~-~~~~~i~l~~~~~al~~~~- 355 (406)
+.-|..++.+||....-+.+.+ +...++...+...+++ .-.+|.++-.+... .....++-..|+.|+.-.-
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~--~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~ 83 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEE--KKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLE 83 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTS--SHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 4445677788888888888876 4456777777777765 12233333322211 1346788888988885211
Q ss_pred -CCC--C----CHHHHHHHHHHHHHcCce
Q psy9768 356 -GKH--I----DLEDTHCLLCNLIHDGQL 377 (406)
Q Consensus 356 -~~~--~----~~devEcilanLI~~g~I 377 (406)
.+| + -.+-+..+++.+|.+|.+
T Consensus 84 ~l~Dl~~D~P~~~~~la~~~~~~i~~~~l 112 (113)
T PF02847_consen 84 SLEDLELDIPKAPEYLAKFLARLIADGIL 112 (113)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHHHTTSS
T ss_pred HhhhccccchHHHHHHHHHHHHHHHcCCc
Confidence 111 1 245678899999998875
No 101
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=38.73 E-value=48 Score=24.60 Aligned_cols=38 Identities=26% Similarity=0.459 Sum_probs=28.8
Q ss_pred cccHHHHHHHhccc----cCCCCCHHHHHHHHHHHHHcCcee
Q psy9768 341 VVELQQFLQALHYV----EGKHIDLEDTHCLLCNLIHDGQLK 378 (406)
Q Consensus 341 ~i~l~~~~~al~~~----~~~~~~~devEcilanLI~~g~Ik 378 (406)
.+|++.|..-|+.. +.-+.+.+|++..|..++.+|.+.
T Consensus 11 sl~l~RIh~mLkmf~~~~~~~~~s~~eL~~fL~~lv~e~~L~ 52 (60)
T PF08672_consen 11 SLPLDRIHSMLKMFPKDPGGYDISLEELQEFLDRLVEEGKLE 52 (60)
T ss_dssp SEEHHHHHHHHHHH-GGG--TT--HHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 48888888888765 223588999999999999999874
No 102
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=37.88 E-value=77 Score=28.09 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEe
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYIS 382 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIs 382 (406)
...|++++.++.++. ++..-|-.-+-.|...|.|+||..
T Consensus 25 ~d~R~s~~eiA~~lg------lS~~tv~~Ri~rL~~~GvI~~~~~ 63 (164)
T PRK11169 25 KDGRISNVELSKRVG------LSPTPCLERVRRLERQGFIQGYTA 63 (164)
T ss_pred cCCCCCHHHHHHHHC------cCHHHHHHHHHHHHHCCCeEEEEE
Confidence 578999999999984 567889999999999999999864
No 103
>KOG1156|consensus
Probab=37.30 E-value=90 Score=34.04 Aligned_cols=76 Identities=17% Similarity=0.318 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHHHhcc----CC---CCC---CCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHH
Q psy9768 171 GMLPFVNQLFKVYFRISKLHLMKPLIRAIES----SQ---YKD---KSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFA 240 (406)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~----~~---~~~---~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A 240 (406)
|+-++..-+--.|-.-.+.+..+.++....+ +. ..+ .-|....++=.||+..-+-..|+|+.|.+++..|
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4444444444455444444444544443332 21 111 2366777888899999999999999999999999
Q ss_pred HHHhcc
Q psy9768 241 FQRCHK 246 (406)
Q Consensus 241 ~~~c~~ 246 (406)
+.|||.
T Consensus 398 IdHTPT 403 (700)
T KOG1156|consen 398 IDHTPT 403 (700)
T ss_pred hccCch
Confidence 999996
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=36.08 E-value=1.9e+02 Score=26.41 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=43.9
Q ss_pred HHHhcCC--hhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 182 VYFRISK--LHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 182 iYfkl~~--~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.|++.|+ .+-+..+++..-...+. -++.++.+|..++..|+|.+|..++..++..-|++.
T Consensus 117 L~~~~g~~~~~~A~~~l~~al~~dP~-------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 117 LYYQAGQHMTPQTREMIDKALALDAN-------EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCC-------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3577777 36777776554332111 146779999999999999999999999999888755
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=36.05 E-value=65 Score=23.12 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=20.6
Q ss_pred hhhccHHHHHHHHHHHHHHhcccc
Q psy9768 225 MFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 225 ~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+-+++|.+|.+.|..++...|.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~ 25 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNP 25 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCH
Confidence 467899999999999999988643
No 106
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=35.87 E-value=1e+02 Score=33.17 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=18.5
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.++.|.++...|+|.+|.+.+..|+...|.
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 470 YNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 345566666666666666666666665554
No 107
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.65 E-value=74 Score=30.88 Aligned_cols=68 Identities=15% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccC-CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESS-QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+.-++.| +-|++.-+..-|++--.. |-....|.+ +||+|...+-+++|.+|.+.|-.+.+..|++.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA-----~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA-----YYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh-----HHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 555666655 456688888877663322 111112222 69999999999999999999999999888654
No 108
>KOG0889|consensus
Probab=35.25 E-value=5.4e+02 Score=34.01 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=75.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHH
Q psy9768 99 DNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQ 178 (406)
Q Consensus 99 ~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~ 178 (406)
++=+.-....++..+..+|..|-++ ..-+-|...+.+.|+.-.-+ =.-.+.=.-.
T Consensus 2725 s~~~~~Gyhe~A~~in~fakvArkh----------------~l~~vcl~~L~~iytlp~ve---------iqdaF~K~re 2779 (3550)
T KOG0889|consen 2725 SNNLYRGYHELAWAINRFAKVARKH----------------GLPDVCLNQLAKIYTLPNVE---------IQDAFQKLRE 2779 (3550)
T ss_pred cchHHHhHHHHHHHHHHHHHHHHhc----------------CChHHHHHHHHHHhccCcch---------HHHHHHHHHH
Confidence 3334444455555566666555322 23344556666777653221 1112223344
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
-.+.|.. +..-++.=+..++++++ ..|+..|..+|.+-.|.+..--+++++|.+.+..|...|.
T Consensus 2780 q~~c~l~--~~~e~~~gLevi~sTNl-~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~ 2843 (3550)
T KOG0889|consen 2780 QAKCYLQ--NKNELKTGLEVIESTNL-MYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDD 2843 (3550)
T ss_pred HHHHHhc--ChHHHHHHHHHHhcccH-HHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHh
Confidence 4555543 33555566677777654 3688899999999999999999999999999999988654
No 109
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=34.89 E-value=4.2e+02 Score=25.41 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhh-ccHHHHHHHHHHHHHHhcccc-hH
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFD-SDYKTANEYLTFAFQRCHKSS-KK 250 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~-~~~~~A~~~L~~A~~~c~~~~-~~ 250 (406)
.-.....+.+|.+.|++..+..+... .|+++--+ +++.+|.+++..|...+.... ..
T Consensus 94 i~~~~~A~~~y~~~G~~~~aA~~~~~---------------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~ 152 (282)
T PF14938_consen 94 IECYEKAIEIYREAGRFSQAAKCLKE---------------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPH 152 (282)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHH---------------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHH---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChh
Confidence 34556666777777777766555543 34455555 678888888888888665433 34
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q psy9768 251 NKRLILIYLVPVKMLLGFM 269 (406)
Q Consensus 251 nk~~IL~yLIp~~lllG~~ 269 (406)
+...++.-+.-+...+|++
T Consensus 153 ~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 153 SAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHHhCCH
Confidence 4444555555555555543
No 110
>PRK11189 lipoprotein NlpI; Provisional
Probab=34.81 E-value=2.3e+02 Score=27.49 Aligned_cols=61 Identities=11% Similarity=0.019 Sum_probs=42.7
Q ss_pred HHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 180 FKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
-.+|.+.|+.+.+...+. +++-.| . ....++.+|..+...++|.+|.+.+..|++.-|...
T Consensus 71 g~~~~~~g~~~~A~~~~~~Al~l~P------~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~ 132 (296)
T PRK11189 71 GVLYDSLGLRALARNDFSQALALRP------D--MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN 132 (296)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC------C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 336888899888866554 344322 1 134557888888888888888888888888777543
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=33.88 E-value=2.6e+02 Score=27.11 Aligned_cols=69 Identities=7% Similarity=-0.091 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 171 GMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
+..+....+-.+|...|+++.+...++..-...+.+ ......+|.++...+++.+|..++..++...|.
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 334455555667777888777766665432221111 344566677777777777777777777776553
No 112
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=33.69 E-value=1.5e+02 Score=25.20 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=34.5
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHhhHHHHHHHHHH
Q psy9768 282 QLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYN 331 (406)
Q Consensus 282 ~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~lerlr~lv~rnL~k 331 (406)
....|.++|++||+..=-+.++++...+.+.+-.+. -.|+..-+-.++|
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~-f~L~~q~fiell~ 52 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLE-FELRCQQFIELLR 52 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchh-HHHHHHHHHHHHH
Confidence 456899999999999999999999888887764332 2333333444555
No 113
>KOG1173|consensus
Probab=33.46 E-value=52 Score=35.22 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=50.3
Q ss_pred HHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q psy9768 183 YFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPV 262 (406)
Q Consensus 183 Yfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~ 262 (406)
|.++||+.+++.++..--+..+ ++.+.. =++|.+++-.++|.+|..+|+.|+..-+... .+.+ ...|.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P------~Dplv~-~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~---~e~~--~w~p~ 457 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAP------SDPLVL-HELGVVAYTYEEYPEALKYFQKALEVIKSVL---NEKI--FWEPT 457 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCC------Ccchhh-hhhhheeehHhhhHHHHHHHHHHHHHhhhcc---cccc--chhHH
Confidence 7789999999999876443222 222333 3689999989999999999999995433221 1122 55666
Q ss_pred HHhcCCC
Q psy9768 263 KMLLGFM 269 (406)
Q Consensus 263 ~lllG~~ 269 (406)
...+|+.
T Consensus 458 ~~NLGH~ 464 (611)
T KOG1173|consen 458 LNNLGHA 464 (611)
T ss_pred HHhHHHH
Confidence 6666663
No 114
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.42 E-value=1.2e+02 Score=29.17 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=49.3
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcc-hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLS-QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~-~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+=..|+..|+++-+...++.+-.. ||.+ ..-.-.|.+|.++.-.+++.+|.+.|....+..|.+.
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~-----yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKN-----YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 345688999999998888765432 2221 1123467799999999999999999999999999764
No 115
>KOG4056|consensus
Probab=33.34 E-value=44 Score=29.15 Aligned_cols=29 Identities=17% Similarity=0.315 Sum_probs=25.8
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+|.-++-+++++++-.||..|+..|++.+
T Consensus 87 lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 87 LGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred hHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 47778889999999999999999999854
No 116
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=33.20 E-value=3e+02 Score=24.71 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=35.2
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcC
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLG 267 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG 267 (406)
=+.-+|.+++--||+.+|.+++..+...|.. .+++--+...+|=+.+..|
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~ 87 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFG 87 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhC
Confidence 3456788889999999999999999998875 3344444444444444443
No 117
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=33.07 E-value=76 Score=27.73 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=33.3
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
...|+|++.++..+. ++...|-.-+-.|...|.|+||-
T Consensus 20 ~d~R~s~~eiA~~lg------lS~~tV~~Ri~rL~~~GvI~~~~ 57 (153)
T PRK11179 20 ENARTPYAELAKQFG------VSPGTIHVRVEKMKQAGIITGTR 57 (153)
T ss_pred HcCCCCHHHHHHHHC------cCHHHHHHHHHHHHHCCCeeeEE
Confidence 358999999999994 57789999999999999999873
No 118
>PRK12370 invasion protein regulator; Provisional
Probab=32.37 E-value=1.7e+02 Score=31.19 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=46.1
Q ss_pred HHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 180 FKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
-.+|...|+++-+...++. ++-.| .. ...+|++|..++..|++.+|.+++..|++..|...
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l~P------~~--~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLLSP------IS--ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC------CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 3467788999988777644 33322 22 23568899999999999999999999999988753
No 119
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=32.21 E-value=59 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=27.3
Q ss_pred chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 211 SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 211 ~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
.++..-....|.+++.+|||++|++.+..|-+.
T Consensus 56 ~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 56 RRKAQRALSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334455678999999999999999999999664
No 120
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.19 E-value=3e+02 Score=26.41 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=56.5
Q ss_pred HHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHH-HHHHHhccCCCCCCCCcchhhHHhhhhhhhhhh
Q psy9768 148 MLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMK-PLIRAIESSQYKDKSSLSQQITYKYYVGRKAMF 226 (406)
Q Consensus 148 ~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~-~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~ 226 (406)
++.=++-.|.+|..+. ..+++.-+--.--.|=--|+.-|++..++ ++-++++..| .++.+|-+.=.|| ..
T Consensus 11 v~~La~~~cvt~~~~~-~~~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP---s~~~a~~~~A~~Y-----q~ 81 (250)
T COG3063 11 VFSLALGACVTDPAPS-RQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDP---SYYLAHLVRAHYY-----QK 81 (250)
T ss_pred HHHHhhhcccCCCCcc-ccccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHH-----HH
Confidence 3333445566664432 13444445555556667799999999995 4557777653 3344555544444 34
Q ss_pred hccHHHHHHHHHHHHHHhcccc
Q psy9768 227 DSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 227 ~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.|+-+.|.+.+..|+..-|.++
T Consensus 82 ~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 82 LGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cCChhhHHHHHHHHHhcCCCcc
Confidence 5777778888888888777654
No 121
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=31.91 E-value=51 Score=19.50 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhcc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIES 201 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~ 201 (406)
..|.++..|.+.|+++-+..+++-+..
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 358899999999999999999987754
No 122
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=31.22 E-value=1e+02 Score=35.61 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=56.9
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCChhh-hchh----ch-hhhHH
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTREL-LDKY----DL-LQLWD 285 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~l-l~~~----~l-~~y~~ 285 (406)
-+|.|+|-.|+.+..+|||.+|...|..|++.-|.+. -+...|.-.-+..|+.+...- +++- +- ..|..
T Consensus 42 ~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~-----~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~ 116 (987)
T PRK09782 42 FVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNI-----PLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLER 116 (987)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 3577888899999999999999999999999888653 233555666667788775432 2221 11 12334
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHH
Q psy9768 286 VTVAVKGGQINQLSDAMTKHQTF 308 (406)
Q Consensus 286 l~~aik~Gnl~~f~~~l~~~~~~ 308 (406)
+. |.+..++++++.++..
T Consensus 117 ~L-----a~i~~~~kA~~~ye~l 134 (987)
T PRK09782 117 SL-----AAIPVEVKSVTTVEEL 134 (987)
T ss_pred HH-----HHhccChhHHHHHHHH
Confidence 33 4446666777666544
No 123
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=30.79 E-value=3e+02 Score=28.35 Aligned_cols=112 Identities=16% Similarity=0.280 Sum_probs=73.0
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhcccc-----------------hH-----------HHHHHHHHHHHHHHhc--CCC
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKSS-----------------KK-----------NKRLILIYLVPVKMLL--GFM 269 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-----------------~~-----------nk~~IL~yLIp~~lll--G~~ 269 (406)
.|.+.+++|+|.+|+..+..+=++-+... .. +......+|.-+++++ |+.
T Consensus 90 egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 90 EGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 46677889999999999988776654311 01 1345667777777777 456
Q ss_pred CChh-----hhchhchh-hhHH--HHHHHHhCCHHHHHHHHHHhHHHHHHhcHHH--HHHhhHHHHHHHHHHHHHh
Q psy9768 270 PTRE-----LLDKYDLL-QLWD--VTVAVKGGQINQLSDAMTKHQTFFIKCGIYL--ILEKLKMITYRNFYNIHKD 335 (406)
Q Consensus 270 P~~~-----ll~~~~l~-~y~~--l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl--~lerlr~lv~rnL~kkv~~ 335 (406)
|... +++.-+.. .-.. .--.++.|+.......+.+ +.|.|++. -..+++.-+|+++++..-.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~----L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK----LRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH----HHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 7542 23322221 1222 2346888999888888775 67778764 4688899999988876543
No 124
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=30.56 E-value=2.7e+02 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.346 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHh
Q psy9768 281 LQLWDVTVAVKGGQINQLSDAMTKH 305 (406)
Q Consensus 281 ~~y~~l~~aik~Gnl~~f~~~l~~~ 305 (406)
..+..|++||+.||...-.+++..|
T Consensus 98 ~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 98 EEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4588999999999999999999876
No 125
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=30.17 E-value=1.5e+02 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHH
Q psy9768 286 VTVAVKGGQINQLSDAMTKHQTF 308 (406)
Q Consensus 286 l~~aik~Gnl~~f~~~l~~~~~~ 308 (406)
+++|+++||+..|.+.+..+...
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~ 23 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQEN 23 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhh
Confidence 57899999999999999987653
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=29.96 E-value=2e+02 Score=28.93 Aligned_cols=60 Identities=12% Similarity=-0.021 Sum_probs=45.3
Q ss_pred HHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 181 KVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 181 kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.-+|+-++++-|-..++. ++-.|- -..+++..|..++..++|.+|...+..|+...|...
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~--------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN--------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 456778888888776644 332221 135678999999999999999999999999988654
No 127
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=29.96 E-value=75 Score=32.42 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=30.6
Q ss_pred CcchhhHHhhhhhhhhhhhccHHHHHHHHH--HHHHHhcc
Q psy9768 209 SLSQQITYKYYVGRKAMFDSDYKTANEYLT--FAFQRCHK 246 (406)
Q Consensus 209 ~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~--~A~~~c~~ 246 (406)
|....+.++..+|++++..++|.+|.++|. .|+...|.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD 369 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC
Confidence 344335788899999999999999999999 57776554
No 128
>KOG3081|consensus
Probab=29.38 E-value=1e+02 Score=30.18 Aligned_cols=98 Identities=13% Similarity=0.168 Sum_probs=63.9
Q ss_pred chhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCC---CC--------CCCCcchhh--HHhhh--------------h
Q psy9768 168 KKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQ---YK--------DKSSLSQQI--TYKYY--------------V 220 (406)
Q Consensus 168 Kk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~---~~--------~~~~~~~~v--ty~YY--------------~ 220 (406)
++.+-+-.+.+-..|..|+++.+++++-++.+..-. .. ..+..+..+ .|++| .
T Consensus 132 ~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~lln 211 (299)
T KOG3081|consen 132 HLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLN 211 (299)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHc
Confidence 335556666666677777777777777777665421 00 011112222 23333 2
Q ss_pred h--hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCC
Q psy9768 221 G--RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMP 270 (406)
Q Consensus 221 G--r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P 270 (406)
| .+++..++|.+|+..|..|+..-+... -.|.-+|.+.+++|+=|
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEALDKDAKDP-----ETLANLIVLALHLGKDA 258 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHhccCCCH-----HHHHHHHHHHHHhCCCh
Confidence 3 458889999999999999999877553 45888999999999843
No 129
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=29.31 E-value=3.8e+02 Score=23.18 Aligned_cols=70 Identities=11% Similarity=-0.114 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.......+...|+..|+++.+-..++.. .-.+ +. .+...-.+.+|.++...+++.+|.+.+..|+..-|.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~--~~---~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI--DP---YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--cc---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3344455567889999999987776543 3211 10 123345688999999999999999999999987443
No 130
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=29.18 E-value=47 Score=33.95 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=29.8
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
--++++|++++-+..|.+|.++|..|+..-|...
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh
Confidence 4679999999999999999999999998766544
No 131
>KOG3250|consensus
Probab=28.89 E-value=86 Score=29.60 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=59.4
Q ss_pred hhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCC
Q psy9768 281 LQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHID 360 (406)
Q Consensus 281 ~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~ 360 (406)
..|..+..-+-.|++..|-.--.+ |-+-. ..-+.+|+.+..-++.- ....||+..+...+... .
T Consensus 60 sa~lrlL~lFa~Gt~~Dy~aea~r----lp~Ls-~~q~~kLk~ltV~slas------~~k~lpy~~Ll~~l~~~-----n 123 (258)
T KOG3250|consen 60 SAYLRLLELFAYGTYRDYSAEALR----LPKLS-LAQLNKLKHLTVVSLAS------FEKCLPYLVLLRLLPSR-----N 123 (258)
T ss_pred HHHHHHHHHHhcCchhhhhhhhhc----CCCCC-HHHHHhhhcceehhhhh------hchhhhHHHHHhhccCC-----c
Confidence 347777777777777665432211 11110 11234444443333333 33568888887777432 3
Q ss_pred HHHHHHHHHHHHHcCceeEEEecCCcEEEEc
Q psy9768 361 LEDTHCLLCNLIHDGQLKGYISLAHQKVVLS 391 (406)
Q Consensus 361 ~devEcilanLI~~g~IkGyIsh~~~~lVlS 391 (406)
.-|+|..+.-..+.+.+.|+|+..++++-++
T Consensus 124 vrelEd~iieamya~IlrGkldqr~q~leV~ 154 (258)
T KOG3250|consen 124 VRELEDLIIEAMYADILRGKLDQRNQTLEVD 154 (258)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHhhcceEeec
Confidence 4789999999999999999999999998654
No 132
>KOG4507|consensus
Probab=28.57 E-value=2.5e+02 Score=30.65 Aligned_cols=84 Identities=13% Similarity=0.086 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhh
Q psy9768 144 TTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRK 223 (406)
Q Consensus 144 ~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~ 223 (406)
.|...++++|+. .++.--..+.-++|.+++-=..++-..+...-+.- .++.+ -++|-.|+.
T Consensus 625 ~a~~cl~~a~~~--------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~-~~sep----------l~~~~~g~~ 685 (886)
T KOG4507|consen 625 FAIACLQRALNL--------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI-NSSEP----------LTFLSLGNA 685 (886)
T ss_pred HHHHHHHHHhcc--------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh-cccCc----------hHHHhcchh
Confidence 445556666643 12223345677777777655444433333222221 12211 366899999
Q ss_pred hhhhccHHHHHHHHHHHHHHhcc
Q psy9768 224 AMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 224 ~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
++.-.+...|-++|..|++..|+
T Consensus 686 ~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 686 YLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred HHHHhhhHHHHHHHHHHHhcCCC
Confidence 99999999999999999996443
No 133
>KOG1840|consensus
Probab=28.02 E-value=7.7e+02 Score=26.36 Aligned_cols=157 Identities=15% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHH
Q psy9768 104 PVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVY 183 (406)
Q Consensus 104 p~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiY 183 (406)
|....++..|.......-+-. +.....+.|.+++-+.+. .+...+....+.+=..|
T Consensus 196 P~~~~~~~~La~~y~~~g~~e------------~A~~l~k~Al~~l~k~~G------------~~hl~va~~l~~~a~~y 251 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLE------------KAEPLCKQALRILEKTSG------------LKHLVVASMLNILALVY 251 (508)
T ss_pred chHHHHHHHHHHHHHHhccHH------------HHHHHHHHHHHHHHHccC------------ccCHHHHHHHHHHHHHH
Q ss_pred HhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc---cchHHHHHHHHHH
Q psy9768 184 FRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK---SSKKNKRLILIYL 259 (406)
Q Consensus 184 fkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~---~~~~nk~~IL~yL 259 (406)
..++++.-+.+++ +++.-..-.---...+.++.+-=+|..|.-.|+|.+|+.++..|++..-. ...+.-..-|..+
T Consensus 252 ~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 252 RSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Q ss_pred HHHHHhcCCCCChhhhchhchhhhH
Q psy9768 260 VPVKMLLGFMPTRELLDKYDLLQLW 284 (406)
Q Consensus 260 Ip~~lllG~~P~~~ll~~~~l~~y~ 284 (406)
+.+-..+|++-....+.+-.+..|.
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHH
No 134
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=27.85 E-value=7.5e+02 Score=27.02 Aligned_cols=128 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCC
Q psy9768 56 IFELVSAHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSG 135 (406)
Q Consensus 56 ~~evv~~~lk~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~ 135 (406)
|+.++..|.+ .+++.+|.+.+.++... ...........+...|..+
T Consensus 293 ~n~li~~y~~------~g~~~eA~~lf~~M~~~------g~~pd~~t~~~ll~a~~~~---------------------- 338 (697)
T PLN03081 293 WNSMLAGYAL------HGYSEEALCLYYEMRDS------GVSIDQFTFSIMIRIFSRL---------------------- 338 (697)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhc----------------------
Q ss_pred CCcchhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhH
Q psy9768 136 AKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQIT 215 (406)
Q Consensus 136 ~~~~~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vt 215 (406)
..++++-.+...+-+.-..... .+.|.|+..|.|.|+++.+..++..+.. .+.++
T Consensus 339 ----g~~~~a~~i~~~m~~~g~~~d~------------~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t 393 (697)
T PLN03081 339 ----ALLEHAKQAHAGLIRTGFPLDI------------VANTALVDLYSKWGRMEDARNVFDRMPR---------KNLIS 393 (697)
T ss_pred ----cchHHHHHHHHHHHHhCCCCCe------------eehHHHHHHHHHCCCHHHHHHHHHhCCC---------CCeee
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
| --+..-+...|+..+|.+.|......
T Consensus 394 ~-n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 394 W-NALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHh
No 135
>KOG4642|consensus
Probab=27.19 E-value=1.1e+02 Score=29.56 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHHhcCChhhH-HHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 182 VYFRISKLHLM-KPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 182 iYfkl~~~~l~-~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.|+|+++.++| ....++++-. ...|.=+|++|...+....|.+|-.+|+.|+.+...+.
T Consensus 53 chlk~~~~~~v~~dcrralql~--------~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 53 CHLKLKHWEPVEEDCRRALQLD--------PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHhhhhhhhhhhHHHHHhcC--------hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 58889999887 4566666543 23477889999999999999999999999977655433
No 136
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=26.60 E-value=90 Score=25.15 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=30.0
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
..-++++.|...|. ++.++|+-.|--|+.+|+|---|
T Consensus 63 ~~Gv~v~~I~~~l~------~~~~~v~~al~~L~~eG~IYsTi 99 (102)
T PF08784_consen 63 EEGVHVDEIAQQLG------MSENEVRKALDFLSNEGHIYSTI 99 (102)
T ss_dssp TTTEEHHHHHHHST------S-HHHHHHHHHHHHHTTSEEESS
T ss_pred CCcccHHHHHHHhC------cCHHHHHHHHHHHHhCCeEeccc
Confidence 45699999998882 57899999999999999985433
No 137
>PRK11906 transcriptional regulator; Provisional
Probab=26.08 E-value=88 Score=32.81 Aligned_cols=42 Identities=14% Similarity=0.190 Sum_probs=31.1
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLV 260 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLI 260 (406)
=.||.|.+.++.|+..+|.+++..|++.-|. +-+--|++..|
T Consensus 374 ~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~---~~~~~~~~~~~ 415 (458)
T PRK11906 374 LYYYRALVHFHNEKIEEARICIDKSLQLEPR---RRKAVVIKECV 415 (458)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCch---hhHHHHHHHHH
Confidence 3588899999999999999999999998773 23334554444
No 138
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=25.47 E-value=4.1e+02 Score=25.74 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.+.+++.-+.--+| .+ +-|.+=-+|-++|+.+.++.-+.. ++=. |... ++.=-+
T Consensus 116 ~~~A~~~~rkA~~l~p~d-------~~------~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~------~~~p--~~~nNl 174 (257)
T COG5010 116 FGEAVSVLRKAARLAPTD-------WE------AWNLLGAALDQLGRFDEARRAYRQALELA------PNEP--SIANNL 174 (257)
T ss_pred hHHHHHHHHHHhccCCCC-------hh------hhhHHHHHHHHccChhHHHHHHHHHHHhc------cCCc--hhhhhH
Confidence 677778887776653332 22 445666789999999999887644 4422 1111 223357
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCC
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPT 271 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~ 271 (406)
|..++++||+++|+..|..|...-+.+. .|.--|.-+.-..|.++-
T Consensus 175 gms~~L~gd~~~A~~lll~a~l~~~ad~-----~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 175 GMSLLLRGDLEDAETLLLPAYLSPAADS-----RVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCch-----HHHHHHHHHHhhcCChHH
Confidence 8888999999999999999998744332 333344444444555543
No 139
>PHA02608 67 prohead core protein; Provisional
Probab=25.40 E-value=3e+02 Score=21.59 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=12.3
Q ss_pred HHHHHHHHhCCHHHH
Q psy9768 284 WDVTVAVKGGQINQL 298 (406)
Q Consensus 284 ~~l~~aik~Gnl~~f 298 (406)
..|+.|||+|||..-
T Consensus 2 e~lIeAIKS~DLV~a 16 (80)
T PHA02608 2 EDLIEAIKSGDLVEA 16 (80)
T ss_pred hHHHHHHhcCcHHHH
Confidence 468999999999643
No 140
>PRK09954 putative kinase; Provisional
Probab=25.24 E-value=2e+02 Score=28.59 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=36.4
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEE---EecCCcEEEE
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGY---ISLAHQKVVL 390 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGy---Ish~~~~lVl 390 (406)
...+++.+.+...|. ++...|...+.+|..+|+|+|| +.+...++|+
T Consensus 14 ~~~~~s~~~la~~l~------~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~vi 63 (362)
T PRK09954 14 RNPLIQQNEIADILQ------ISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVV 63 (362)
T ss_pred HCCCCCHHHHHHHHC------CCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEE
Confidence 346899999999984 5778999999999999999764 3344445555
No 141
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=25.03 E-value=1.3e+02 Score=17.89 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccC
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESS 202 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~ 202 (406)
.|.++..|.+.++++-+..+++.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 578999999999999999999988765
No 142
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=24.87 E-value=65 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.4
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHH
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTF 239 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~ 239 (406)
-.|.|++|..++-.++|.+|.+.++.
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35788899999999999999998887
No 143
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.31 E-value=3.8e+02 Score=21.58 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=55.3
Q ss_pred hHHHHHHHHhCCHHHHHHHHHH-----hHHHHHHhcHHHHHHhh--HHHHHHHHHHHHHhcCCCccccHHHHHHHhccc-
Q psy9768 283 LWDVTVAVKGGQINQLSDAMTK-----HQTFFIKCGIYLILEKL--KMITYRNFYNIHKDINKNSVVELQQFLQALHYV- 354 (406)
Q Consensus 283 y~~l~~aik~Gnl~~f~~~l~~-----~~~~f~~~glyl~lerl--r~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~- 354 (406)
+.-+-.+...||....-+.+.+ +...+++.-+...+++= ..-.+-.|+...+ +...++-+.|+.|+.-.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~---~~~~~~~~~~~~~f~~~~ 82 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEEKRTYREMYSVLLSRLC---QANVISTKQFEKGFWRLL 82 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCccHHHHHHHHHHHHH---HcCCcCHHHHHHHHHHHH
Confidence 3445566777787777777764 45678888777777651 1112223333322 34677888888887532
Q ss_pred -cCCCC------CHHHHHHHHHHHHHcCce
Q psy9768 355 -EGKHI------DLEDTHCLLCNLIHDGQL 377 (406)
Q Consensus 355 -~~~~~------~~devEcilanLI~~g~I 377 (406)
..+|+ -.+-+.+++|.+|.+|.+
T Consensus 83 ~~l~dl~~D~P~a~~~la~~~a~~v~~~~l 112 (113)
T smart00544 83 EDIEDLELDIPNAWRNLAEFVARLISDGIL 112 (113)
T ss_pred hhChhhhcccccHHHHHHHHHHHHHHcCCC
Confidence 11222 235577888888888865
No 144
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=24.15 E-value=2.7e+02 Score=24.22 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHH--HHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCH
Q psy9768 284 WDVTVAVKGGQINQLSDAMTKHQT--FFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDL 361 (406)
Q Consensus 284 ~~l~~aik~Gnl~~f~~~l~~~~~--~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~ 361 (406)
.....|-+.|.+..+....+.+-. ..|.. .++.. ....+++=+.+...++- ...
T Consensus 5 ~s~~~A~~~gEl~~~raS~~aN~~Ck~aIE~----------------aI~~~---~~~~~L~~~a~~~vie~-----fG~ 60 (133)
T PF12960_consen 5 HSAEYAREHGELAQYRASRKANIACKEAIEQ----------------AIREH---FDGNRLDPDAVKEVIEK-----FGY 60 (133)
T ss_pred hhHHHHHHcCcHHHHHHHHHhhHHHHHHHHH----------------HHHHH---cCCCcCCHHHHHHHHHH-----HHH
Confidence 356788899999888887776532 11111 22222 24567775566666643 345
Q ss_pred HHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCCCCC
Q psy9768 362 EDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPK 398 (406)
Q Consensus 362 devEcilanLI~~g~IkGyIsh~~~~lVlSk~~pFP~ 398 (406)
+.+..+|||=|.+.-=.|.+|+.++- =.|+-|+|.
T Consensus 61 eR~~~VLAnTIq~kd~DGRfS~~NK~--WAk~~~~~~ 95 (133)
T PF12960_consen 61 ERVAYVLANTIQQKDWDGRFSQDNKD--WAKTIPVPE 95 (133)
T ss_pred HHHHHHHHHHHHhccccccCCHHHHH--HHHcCCCCC
Confidence 89999999999999999999999872 445555554
No 145
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=24.00 E-value=4.6e+02 Score=25.34 Aligned_cols=64 Identities=9% Similarity=-0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhcc-CCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHH
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIES-SQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQ 242 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~-~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~ 242 (406)
....+-.+|...|+++-+...+...-. .+. +....+...+..|++++..|++.+|...+..+..
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 455667889999999999888765332 221 1122234456799999999999999999999864
No 146
>KOG3060|consensus
Probab=23.83 E-value=3.1e+02 Score=26.74 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHH
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKN 251 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~n 251 (406)
.+++.-++|-.-.-.|..++++.+++.+. +.||.|.+|.=.+ |...=..++|.+|.+.+..=+..-|.+....
T Consensus 51 ~w~l~EqV~IAAld~~~~~lAq~C~~~L~-----~~fp~S~RV~~lk--am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~ 123 (289)
T KOG3060|consen 51 IWTLYEQVFIAALDTGRDDLAQKCINQLR-----DRFPGSKRVGKLK--AMLLEATGNYKEAIEYYESLLEDDPTDTVIR 123 (289)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHH-----HhCCCChhHHHHH--HHHHHHhhchhhHHHHHHHHhccCcchhHHH
Confidence 56666677777778899999999998865 4689998874321 3333356899999999998888878776656
Q ss_pred HHHHH
Q psy9768 252 KRLIL 256 (406)
Q Consensus 252 k~~IL 256 (406)
||++-
T Consensus 124 KRKlA 128 (289)
T KOG3060|consen 124 KRKLA 128 (289)
T ss_pred HHHHH
Confidence 66543
No 147
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=23.66 E-value=1.7e+02 Score=27.79 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|.+.+.++.+. .|+.+ -+.+.+..++...|+.+.++.+++...... |.+. .+....|
T Consensus 162 ~~~A~~~~~~al~~-----~P~~~--------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~--~~~~~la 221 (280)
T PF13429_consen 162 PDKALRDYRKALEL-----DPDDP--------DARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP--DLWDALA 221 (280)
T ss_dssp HHHHHHHHHHHHHH------TT-H--------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC--CHCHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCCH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH--HHHHHHH
Confidence 46666666666654 22111 144556777889999998888877765432 1111 3556779
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..++.-|++.+|..+|..+...-|.+.
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHhcccccccccccccccccccccccc
Confidence 999999999999999999999766543
No 148
>PF12854 PPR_1: PPR repeat
Probab=23.62 E-value=1.3e+02 Score=19.16 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHh
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRAI 199 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~i 199 (406)
+..|.++..|.|.|+++-|..+++.+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 46789999999999999999998764
No 149
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=23.59 E-value=3e+02 Score=20.12 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 320 KLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 320 rlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
.-..-||+.|++. .......+...+ +++...|.-+|.+|..+|+|.-.-
T Consensus 8 ~~E~~vy~~Ll~~-------~~~t~~eIa~~l------~i~~~~v~~~L~~L~~~GlV~~~~ 56 (68)
T PF01978_consen 8 ENEAKVYLALLKN-------GPATAEEIAEEL------GISRSTVYRALKSLEEKGLVEREE 56 (68)
T ss_dssp HHHHHHHHHHHHH-------CHEEHHHHHHHH------TSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHc-------CCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEc
Confidence 3445567677642 567788898888 457899999999999999997654
No 150
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=22.91 E-value=2e+02 Score=21.58 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=23.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHHHHH
Q psy9768 285 DVTVAVKGGQINQLSDAMTKHQTFFIK 311 (406)
Q Consensus 285 ~l~~aik~Gnl~~f~~~l~~~~~~f~~ 311 (406)
+++.+-+.||..+-++.|+.++....+
T Consensus 2 ~vI~~A~~GD~~A~~~IL~~y~~yI~k 28 (65)
T PF12645_consen 2 EVIKAAKQGDPEAMEEILKHYEPYISK 28 (65)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999887774
No 151
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=22.72 E-value=1.5e+02 Score=23.81 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=31.3
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
..++|.+.+...+ .++...+--.+..|..+|+|+|+-
T Consensus 15 ~~~~~~~~la~~l------~~s~~tv~~~l~~L~~~g~i~~~~ 51 (108)
T smart00344 15 DARISLAELAKKV------GLSPSTVHNRVKRLEEEGVIKGYT 51 (108)
T ss_pred hCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCeeceE
Confidence 3579999999888 357789999999999999999644
No 152
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=22.57 E-value=1.3e+02 Score=23.95 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHHcCceeEEEecC
Q psy9768 360 DLEDTHCLLCNLIHDGQLKGYISLA 384 (406)
Q Consensus 360 ~~devEcilanLI~~g~IkGyIsh~ 384 (406)
..+....++..|.++|+|+|.--..
T Consensus 23 ~~~~~~~il~~L~d~GyI~G~~~~~ 47 (88)
T PF09639_consen 23 TDSYWSDILRMLQDEGYIKGVSVVR 47 (88)
T ss_dssp -HHHHHHHHHHHHHHTSEE--EESS
T ss_pred hHHHHHHHHHHHHHCCCccceEEEe
Confidence 3477888999999999999964333
No 153
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=22.24 E-value=50 Score=21.12 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=18.4
Q ss_pred hHHhhhhhhhhhhhccHHHHHH
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANE 235 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~ 235 (406)
+..+|.+|.++...|++++|.+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhcC
Confidence 3567899999999999999863
No 154
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=22.21 E-value=2.1e+02 Score=19.35 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=27.5
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCcee
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLK 378 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~Ik 378 (406)
...++...++..+. ++..-|-..+-.|+.+|+|+
T Consensus 15 ~~~~t~~ela~~~~------is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 15 NPRITQKELAEKLG------ISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp CTTS-HHHHHHHHT------S-HHHHHHHHHHHHHTTSEE
T ss_pred cCCCCHHHHHHHhC------CCHHHHHHHHHHHHHCcCcC
Confidence 46689999988884 57789999999999999986
No 155
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=21.42 E-value=2.6e+02 Score=30.57 Aligned_cols=63 Identities=5% Similarity=0.037 Sum_probs=37.6
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+-.+|.+.|+++-+...+..+-... | +...+.++.|..+...|++.+|.++|..|+...|...
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~-----P--~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREK-----G--VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----c--cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4455666666666655554433211 1 1123455567777777777777777777777777654
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.70 E-value=2e+02 Score=29.21 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=30.3
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...++..|++++-.++|.+|.++|..++..-|..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 4678999999999999999999999999986653
No 157
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=20.46 E-value=1.9e+02 Score=25.35 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=28.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhh-hhhhhhhcc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYV-GRKAMFDSD 229 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~-Gr~~~~~~~ 229 (406)
|.-.||+-+++..+...+.. +....|.++.|-|-||+ |..++-+.+
T Consensus 53 l~yayy~~~~y~~A~a~~~r-----FirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDR-----FIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHccCHHHHHHHHHH-----HHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 45679999999988665543 22234555566665554 555554443
No 158
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=20.13 E-value=1.6e+02 Score=26.08 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=23.4
Q ss_pred hhhhhhhhc-cHHHHHHHHHHHHHHhcc
Q psy9768 220 VGRKAMFDS-DYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 220 ~Gr~~~~~~-~~~~A~~~L~~A~~~c~~ 246 (406)
+|.-.+.+| ++.+|-.||..|+.-||.
T Consensus 96 ~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 96 LGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 466666778 999999999999999997
Done!