Query psy9768
Match_columns 406
No_of_seqs 178 out of 564
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:04:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t5v_B Nuclear mRNA export pro 100.0 2.3E-84 7.9E-89 663.9 31.9 387 1-403 1-443 (455)
2 3t5x_A PCI domain-containing p 100.0 2.5E-61 8.5E-66 446.5 20.9 201 203-403 3-203 (203)
3 4b4t_S RPN3, 26S proteasome re 100.0 1.5E-39 5.2E-44 334.3 19.6 234 145-395 210-449 (523)
4 3txn_A 26S proteasome regulato 99.8 1.4E-16 4.7E-21 160.4 28.8 233 142-394 115-363 (394)
5 4b4t_O 26S proteasome regulato 99.6 3.2E-14 1.1E-18 143.5 23.3 214 170-395 124-355 (393)
6 4b4t_P 26S proteasome regulato 99.5 1.1E-13 3.8E-18 141.7 17.0 237 142-393 153-405 (445)
7 4b4t_Q 26S proteasome regulato 99.4 2.7E-11 9.1E-16 120.0 23.8 236 142-392 151-401 (434)
8 4b4t_R RPN7, 26S proteasome re 99.4 3.2E-11 1.1E-15 122.8 22.0 231 142-395 147-395 (429)
9 4b0z_A RPN12, 26S proteasome r 98.6 1E-06 3.5E-11 82.1 14.7 180 180-370 14-214 (229)
10 3chm_A COP9 signalosome comple 98.1 1.3E-05 4.4E-10 71.2 10.0 95 282-393 61-157 (169)
11 1ufm_A COP9 complex subunit 4; 97.7 0.00012 4.3E-09 57.3 8.3 53 338-396 27-79 (84)
12 1qqe_A Vesicular transport pro 94.6 2.3 7.8E-05 39.2 18.1 216 56-307 33-265 (292)
13 3rkv_A Putative peptidylprolyl 92.4 0.84 2.9E-05 37.8 9.9 69 172-248 62-131 (162)
14 2vyi_A SGTA protein; chaperone 92.4 2.2 7.5E-05 32.5 11.8 67 175-248 48-114 (131)
15 3ro3_A PINS homolog, G-protein 92.4 3.3 0.00011 32.6 14.0 96 142-246 65-161 (164)
16 3ulq_A Response regulator aspa 92.3 4.6 0.00016 38.3 16.3 174 62-270 106-281 (383)
17 3ro3_A PINS homolog, G-protein 92.1 1.4 4.8E-05 35.0 10.6 97 142-247 25-122 (164)
18 3q15_A PSP28, response regulat 91.6 4.4 0.00015 38.5 15.3 173 63-270 105-278 (378)
19 3ma5_A Tetratricopeptide repea 91.4 0.89 3E-05 34.8 8.3 65 177-249 11-76 (100)
20 3u3w_A Transcriptional activat 91.4 8.3 0.00029 35.1 18.0 98 142-247 131-229 (293)
21 3nf1_A KLC 1, kinesin light ch 91.1 4.9 0.00017 35.9 14.3 100 142-246 169-310 (311)
22 3sz7_A HSC70 cochaperone (SGT) 90.9 2.6 8.9E-05 34.8 11.4 87 142-249 27-114 (164)
23 4ga2_A E3 SUMO-protein ligase 90.8 0.8 2.7E-05 38.0 7.9 88 140-248 11-99 (150)
24 4gco_A Protein STI-1; structur 90.3 1.3 4.6E-05 35.5 8.7 86 142-248 29-115 (126)
25 2lni_A Stress-induced-phosphop 89.9 3.4 0.00012 31.7 10.7 66 175-248 52-118 (133)
26 3q49_B STIP1 homology and U bo 89.9 1.9 6.5E-05 33.9 9.3 85 142-247 25-110 (137)
27 3sf4_A G-protein-signaling mod 89.9 9.4 0.00032 35.5 15.6 97 142-247 203-300 (406)
28 3k9i_A BH0479 protein; putativ 89.9 0.85 2.9E-05 35.7 7.0 67 174-248 28-95 (117)
29 3edt_B KLC 2, kinesin light ch 89.7 5.7 0.00019 34.7 13.2 141 72-242 98-280 (283)
30 3sf4_A G-protein-signaling mod 89.7 6.1 0.00021 36.9 14.1 121 142-271 243-365 (406)
31 3gw4_A Uncharacterized protein 89.6 8.1 0.00028 32.2 15.7 99 142-248 82-181 (203)
32 1elr_A TPR2A-domain of HOP; HO 89.4 1.4 4.6E-05 33.9 7.8 91 142-246 20-111 (131)
33 3edt_B KLC 2, kinesin light ch 89.4 10 0.00035 33.0 15.3 145 71-246 55-201 (283)
34 3gw4_A Uncharacterized protein 89.3 4.3 0.00015 34.0 11.6 96 142-247 42-140 (203)
35 3ro2_A PINS homolog, G-protein 89.0 9.4 0.00032 34.0 14.4 97 142-247 199-296 (338)
36 2lni_A Stress-induced-phosphop 88.8 4.9 0.00017 30.8 10.9 66 175-247 18-83 (133)
37 2l6j_A TPR repeat-containing p 88.7 2.2 7.7E-05 32.0 8.5 63 177-247 8-71 (111)
38 1na3_A Designed protein CTPR2; 88.7 2.5 8.5E-05 30.5 8.5 65 176-248 12-77 (91)
39 2vgx_A Chaperone SYCD; alterna 88.6 2.1 7E-05 35.4 8.8 63 177-247 59-122 (148)
40 2kat_A Uncharacterized protein 88.6 2.1 7.1E-05 33.0 8.4 66 175-248 21-87 (115)
41 4a1s_A PINS, partner of inscut 88.5 7.5 0.00026 36.7 14.0 97 142-247 239-336 (411)
42 2xev_A YBGF; tetratricopeptide 88.5 1.4 4.8E-05 34.3 7.3 66 178-248 44-110 (129)
43 3ulq_A Response regulator aspa 88.4 17 0.00057 34.3 17.6 98 142-248 200-298 (383)
44 2xcb_A PCRH, regulatory protei 88.4 2.1 7.3E-05 34.6 8.7 63 177-247 56-119 (142)
45 4gco_A Protein STI-1; structur 88.1 1.8 6.1E-05 34.8 7.9 62 179-248 19-81 (126)
46 2qfc_A PLCR protein; TPR, HTH, 87.9 1.4 4.8E-05 40.5 8.0 97 142-246 131-228 (293)
47 3gyz_A Chaperone protein IPGC; 87.7 2 6.7E-05 36.2 8.2 88 142-250 52-140 (151)
48 2fbn_A 70 kDa peptidylprolyl i 87.5 3.7 0.00013 35.0 10.1 98 142-247 54-155 (198)
49 2kc7_A BFR218_protein; tetratr 87.5 2.1 7.2E-05 31.8 7.5 61 180-248 7-69 (99)
50 2vyi_A SGTA protein; chaperone 87.4 4 0.00014 31.0 9.4 68 173-247 12-79 (131)
51 1na0_A Designed protein CTPR3; 87.4 4.6 0.00016 30.3 9.7 67 175-248 45-111 (125)
52 3upv_A Heat shock protein STI1 87.3 4.2 0.00014 31.6 9.6 83 142-245 20-103 (126)
53 4a1s_A PINS, partner of inscut 87.0 20 0.00068 33.6 17.7 99 140-247 197-296 (411)
54 3nf1_A KLC 1, kinesin light ch 86.9 16 0.00055 32.4 18.0 99 142-246 127-227 (311)
55 3q15_A PSP28, response regulat 86.7 13 0.00046 35.0 14.5 97 142-248 198-295 (378)
56 3hym_B Cell division cycle pro 86.4 5.9 0.0002 35.7 11.4 75 174-248 194-270 (330)
57 3gyz_A Chaperone protein IPGC; 86.4 6.7 0.00023 32.8 10.8 65 177-248 40-104 (151)
58 1elw_A TPR1-domain of HOP; HOP 86.2 3.7 0.00013 30.6 8.4 64 177-247 8-71 (118)
59 4gcn_A Protein STI-1; structur 86.2 2.9 9.9E-05 33.4 8.1 63 178-248 13-76 (127)
60 2ifu_A Gamma-SNAP; membrane fu 86.1 20 0.0007 32.8 17.7 128 171-301 114-254 (307)
61 1a17_A Serine/threonine protei 85.8 9.2 0.00031 30.5 11.2 66 175-248 49-115 (166)
62 2dba_A Smooth muscle cell asso 85.7 2.5 8.4E-05 33.4 7.4 66 174-247 66-132 (148)
63 4i17_A Hypothetical protein; T 85.7 0.97 3.3E-05 39.5 5.3 72 175-246 78-149 (228)
64 1elw_A TPR1-domain of HOP; HOP 85.6 4.7 0.00016 30.0 8.7 86 142-248 20-106 (118)
65 2xev_A YBGF; tetratricopeptide 85.6 4.6 0.00016 31.2 8.9 65 179-247 8-72 (129)
66 2kck_A TPR repeat; tetratricop 85.5 2.3 8E-05 31.5 6.8 61 178-246 11-72 (112)
67 3q49_B STIP1 homology and U bo 85.3 3.9 0.00014 31.9 8.5 63 177-247 13-76 (137)
68 3as5_A MAMA; tetratricopeptide 85.3 8.8 0.0003 30.9 10.9 65 176-247 79-143 (186)
69 3sz7_A HSC70 cochaperone (SGT) 85.2 4.9 0.00017 33.0 9.3 65 175-247 13-78 (164)
70 1elr_A TPR2A-domain of HOP; HO 84.9 7.9 0.00027 29.3 9.9 64 177-247 8-71 (131)
71 1qqe_A Vesicular transport pro 84.8 5.4 0.00018 36.6 10.3 100 142-248 134-233 (292)
72 2xcb_A PCRH, regulatory protei 84.8 4.6 0.00016 32.5 8.8 64 178-248 23-86 (142)
73 4b4t_Q 26S proteasome regulato 84.5 7.5 0.00026 37.0 11.6 98 142-247 111-208 (434)
74 3ro2_A PINS homolog, G-protein 84.5 21 0.00072 31.6 16.2 120 142-270 59-200 (338)
75 1hh8_A P67PHOX, NCF-2, neutrop 84.4 4 0.00014 34.7 8.7 83 175-257 73-164 (213)
76 2vgx_A Chaperone SYCD; alterna 83.9 5.2 0.00018 32.9 8.8 65 176-248 24-89 (148)
77 3u4t_A TPR repeat-containing p 83.6 12 0.00041 32.7 11.8 139 142-305 19-165 (272)
78 2fo7_A Synthetic consensus TPR 83.5 3.2 0.00011 31.5 6.9 64 176-246 72-135 (136)
79 4gcn_A Protein STI-1; structur 83.4 4.9 0.00017 32.0 8.2 91 142-246 24-115 (127)
80 1a17_A Serine/threonine protei 83.0 6.2 0.00021 31.6 8.9 66 174-247 14-80 (166)
81 2fo7_A Synthetic consensus TPR 82.9 13 0.00044 27.9 11.0 65 176-247 38-102 (136)
82 2ho1_A Type 4 fimbrial biogene 82.9 9.1 0.00031 33.2 10.6 68 175-247 107-174 (252)
83 1hz4_A MALT regulatory protein 82.6 12 0.00041 34.9 12.0 123 142-271 69-192 (373)
84 2vq2_A PILW, putative fimbrial 82.5 9.8 0.00034 31.9 10.4 68 175-247 78-146 (225)
85 2kck_A TPR repeat; tetratricop 82.4 2.5 8.5E-05 31.3 5.8 88 142-247 22-110 (112)
86 2qfc_A PLCR protein; TPR, HTH, 82.4 6.6 0.00023 35.8 9.8 99 142-248 171-271 (293)
87 3upv_A Heat shock protein STI1 82.1 6.1 0.00021 30.6 8.3 62 178-247 9-71 (126)
88 1p5q_A FKBP52, FK506-binding p 82.1 10 0.00035 35.8 11.3 99 142-248 163-264 (336)
89 1hxi_A PEX5, peroxisome target 82.1 4.4 0.00015 32.0 7.4 61 180-248 24-85 (121)
90 3vtx_A MAMA; tetratricopeptide 81.7 2.8 9.7E-05 34.9 6.4 64 176-247 110-174 (184)
91 3as5_A MAMA; tetratricopeptide 81.6 5.7 0.00019 32.1 8.2 66 175-247 10-75 (186)
92 2ho1_A Type 4 fimbrial biogene 81.4 10 0.00034 32.9 10.3 67 174-247 142-208 (252)
93 2e2e_A Formate-dependent nitri 81.2 12 0.00041 30.7 10.3 63 178-248 83-149 (177)
94 2dba_A Smooth muscle cell asso 81.0 11 0.00037 29.4 9.5 70 173-247 28-98 (148)
95 1na0_A Designed protein CTPR3; 80.9 8.2 0.00028 28.8 8.5 65 176-247 12-76 (125)
96 2v5f_A Prolyl 4-hydroxylase su 80.9 4.2 0.00014 31.5 6.7 74 179-253 11-87 (104)
97 4eqf_A PEX5-related protein; a 80.7 9.3 0.00032 35.4 10.3 89 140-247 191-280 (365)
98 1xnf_A Lipoprotein NLPI; TPR, 80.4 15 0.00052 32.0 11.2 92 140-248 19-111 (275)
99 3urz_A Uncharacterized protein 80.4 6.2 0.00021 34.1 8.4 65 176-248 57-122 (208)
100 2q7f_A YRRB protein; TPR, prot 80.2 7.5 0.00026 33.3 8.9 65 176-247 128-192 (243)
101 2vq2_A PILW, putative fimbrial 80.2 7.4 0.00025 32.7 8.7 66 175-247 10-75 (225)
102 2yhc_A BAMD, UPF0169 lipoprote 79.9 29 0.00099 30.0 17.3 64 185-248 108-181 (225)
103 3qky_A Outer membrane assembly 79.9 31 0.0011 30.3 16.7 146 63-248 19-182 (261)
104 1fch_A Peroxisomal targeting s 79.6 17 0.00059 33.3 11.8 62 177-246 221-283 (368)
105 3qky_A Outer membrane assembly 79.5 3.7 0.00013 36.6 6.8 64 179-247 21-85 (261)
106 3uq3_A Heat shock protein STI1 79.2 14 0.00047 31.7 10.4 100 142-247 54-172 (258)
107 2q7f_A YRRB protein; TPR, prot 79.1 19 0.00064 30.7 11.2 66 175-247 93-158 (243)
108 3u4t_A TPR repeat-containing p 79.0 12 0.00042 32.7 10.1 71 177-248 180-255 (272)
109 3vtx_A MAMA; tetratricopeptide 78.8 2.4 8.3E-05 35.3 5.0 37 212-248 3-39 (184)
110 2fbn_A 70 kDa peptidylprolyl i 77.8 13 0.00044 31.4 9.6 75 173-247 38-121 (198)
111 3uq3_A Heat shock protein STI1 77.5 8.5 0.00029 33.1 8.5 67 174-247 140-206 (258)
112 2v5f_A Prolyl 4-hydroxylase su 77.0 3.8 0.00013 31.7 5.4 53 216-268 7-61 (104)
113 4i17_A Hypothetical protein; T 77.0 4.8 0.00017 34.8 6.6 63 178-247 12-75 (228)
114 3cv0_A Peroxisome targeting si 77.0 13 0.00044 33.3 9.8 88 140-247 152-239 (327)
115 1ihg_A Cyclophilin 40; ppiase 75.9 10 0.00034 36.6 9.2 69 172-248 272-341 (370)
116 1kt0_A FKBP51, 51 kDa FK506-bi 75.2 13 0.00043 36.9 9.9 99 142-248 284-385 (457)
117 2c2l_A CHIP, carboxy terminus 74.4 8.2 0.00028 35.3 7.8 86 142-247 20-105 (281)
118 1fch_A Peroxisomal targeting s 74.4 24 0.00082 32.3 11.1 57 185-247 193-250 (368)
119 1hh8_A P67PHOX, NCF-2, neutrop 74.2 7.4 0.00025 33.0 7.0 66 175-248 39-105 (213)
120 4abn_A Tetratricopeptide repea 74.2 20 0.00069 35.5 11.1 94 140-247 193-291 (474)
121 4ga2_A E3 SUMO-protein ligase 73.8 3.7 0.00013 33.7 4.8 37 212-248 29-65 (150)
122 2ifu_A Gamma-SNAP; membrane fu 73.6 13 0.00045 34.2 9.1 97 142-248 131-228 (307)
123 2xpi_A Anaphase-promoting comp 73.5 9.5 0.00033 38.0 8.6 73 175-248 477-550 (597)
124 2xpi_A Anaphase-promoting comp 73.5 17 0.00057 36.2 10.4 94 142-248 491-584 (597)
125 3mv2_B Coatomer subunit epsilo 73.1 5.6 0.00019 38.1 6.4 96 170-272 133-230 (310)
126 3ieg_A DNAJ homolog subfamily 72.8 53 0.0018 29.4 17.2 91 142-248 250-340 (359)
127 3hym_B Cell division cycle pro 72.6 11 0.00037 33.9 8.0 96 142-248 209-304 (330)
128 3u3w_A Transcriptional activat 72.4 45 0.0015 30.0 12.4 96 173-270 75-172 (293)
129 3ma5_A Tetratricopeptide repea 72.0 6.8 0.00023 29.6 5.6 35 214-248 7-41 (100)
130 2pl2_A Hypothetical conserved 71.7 20 0.00069 31.0 9.4 65 177-248 9-73 (217)
131 3cv0_A Peroxisome targeting si 71.6 29 0.001 30.8 10.8 84 142-246 188-272 (327)
132 1na3_A Designed protein CTPR2; 71.3 7.1 0.00024 27.8 5.4 35 213-247 8-42 (91)
133 3qww_A SET and MYND domain-con 71.3 11 0.00036 37.7 8.2 95 142-243 314-411 (433)
134 3c18_A Nucleotidyltransferase- 70.8 45 0.0016 31.4 11.8 131 218-380 134-272 (290)
135 2y4t_A DNAJ homolog subfamily 70.1 13 0.00046 35.3 8.5 65 175-246 28-92 (450)
136 4eqf_A PEX5-related protein; a 70.0 13 0.00045 34.3 8.2 117 142-271 149-265 (365)
137 1wao_1 Serine/threonine protei 69.8 38 0.0013 33.7 12.1 88 140-248 20-108 (477)
138 1xnf_A Lipoprotein NLPI; TPR, 68.2 11 0.00037 33.0 6.8 66 176-248 80-145 (275)
139 2gw1_A Mitochondrial precursor 67.2 28 0.00096 33.4 10.2 67 175-248 414-483 (514)
140 1p5q_A FKBP52, FK506-binding p 67.2 26 0.00088 32.9 9.7 76 173-248 147-230 (336)
141 1hxi_A PEX5, peroxisome target 67.0 9.3 0.00032 30.0 5.6 62 177-246 55-117 (121)
142 1w3b_A UDP-N-acetylglucosamine 66.6 26 0.0009 32.6 9.6 63 178-247 38-100 (388)
143 3k9i_A BH0479 protein; putativ 66.6 8.6 0.00029 29.6 5.2 36 212-247 25-60 (117)
144 4g1t_A Interferon-induced prot 65.8 24 0.00083 33.8 9.4 102 142-248 67-172 (472)
145 3ffl_A Anaphase-promoting comp 65.2 10 0.00036 32.9 5.7 65 181-246 28-95 (167)
146 2e2e_A Formate-dependent nitri 64.8 17 0.00059 29.8 7.1 66 175-247 46-114 (177)
147 3ieg_A DNAJ homolog subfamily 64.5 22 0.00076 32.0 8.4 61 179-246 9-69 (359)
148 2if4_A ATFKBP42; FKBP-like, al 64.2 7.5 0.00026 36.8 5.2 65 175-247 232-297 (338)
149 2yhc_A BAMD, UPF0169 lipoprote 64.1 12 0.00042 32.5 6.3 65 179-248 10-75 (225)
150 3fp2_A TPR repeat-containing p 63.8 1.1E+02 0.0037 29.5 15.8 65 176-247 313-377 (537)
151 3n71_A Histone lysine methyltr 63.6 17 0.00059 36.8 8.0 74 168-243 346-422 (490)
152 4b4t_T 26S proteasome regulato 63.5 76 0.0026 29.5 11.9 179 180-369 11-222 (274)
153 3rkv_A Putative peptidylprolyl 63.4 30 0.001 27.9 8.3 73 176-248 14-97 (162)
154 3mkr_A Coatomer subunit epsilo 62.3 54 0.0019 29.9 10.7 80 179-270 172-251 (291)
155 3qwp_A SET and MYND domain-con 61.2 23 0.00078 35.1 8.3 75 167-243 323-400 (429)
156 1w3b_A UDP-N-acetylglucosamine 61.1 33 0.0011 31.9 9.2 29 217-245 240-268 (388)
157 1pc2_A Mitochondria fission pr 59.8 7.6 0.00026 33.2 3.8 35 212-246 69-103 (152)
158 3urz_A Uncharacterized protein 59.0 23 0.00078 30.4 7.1 60 181-248 12-88 (208)
159 2l6j_A TPR repeat-containing p 58.7 16 0.00056 26.9 5.4 33 215-247 5-37 (111)
160 2pzi_A Probable serine/threoni 58.2 22 0.00076 37.1 8.0 83 176-271 436-519 (681)
161 2kat_A Uncharacterized protein 56.5 17 0.00057 27.6 5.2 34 214-247 19-52 (115)
162 3fp2_A TPR repeat-containing p 56.4 23 0.0008 34.4 7.4 64 177-247 29-92 (537)
163 1wi9_A Protein C20ORF116 homol 56.1 36 0.0012 25.2 6.4 49 339-393 19-67 (72)
164 2pl2_A Hypothetical conserved 56.0 38 0.0013 29.2 8.0 64 177-248 43-118 (217)
165 1hz4_A MALT regulatory protein 54.3 77 0.0026 29.2 10.4 97 142-246 109-206 (373)
166 2vsy_A XCC0866; transferase, g 54.1 43 0.0015 33.6 9.1 67 175-248 25-91 (568)
167 2gw1_A Mitochondrial precursor 53.8 26 0.0009 33.7 7.2 58 181-246 14-71 (514)
168 1kt0_A FKBP51, 51 kDa FK506-bi 53.7 47 0.0016 32.7 9.2 77 172-248 267-351 (457)
169 4gyw_A UDP-N-acetylglucosamine 53.3 37 0.0013 36.1 8.8 64 176-247 12-76 (723)
170 3bee_A Putative YFRE protein; 53.1 8.9 0.0003 29.3 2.9 33 214-246 43-75 (93)
171 2vsy_A XCC0866; transferase, g 52.4 39 0.0013 33.9 8.5 65 175-247 59-124 (568)
172 4abn_A Tetratricopeptide repea 52.0 41 0.0014 33.2 8.5 86 143-249 120-214 (474)
173 3ax2_A Mitochondrial import re 52.0 15 0.00051 27.4 3.8 28 220-247 23-50 (73)
174 2c2l_A CHIP, carboxy terminus 51.4 32 0.0011 31.2 7.1 64 177-248 8-72 (281)
175 4gyw_A UDP-N-acetylglucosamine 50.9 85 0.0029 33.2 11.1 86 142-248 25-111 (723)
176 2y4t_A DNAJ homolog subfamily 50.1 1.6E+02 0.0056 27.4 17.3 90 142-248 273-363 (450)
177 2h6f_A Protein farnesyltransfe 49.5 48 0.0017 32.0 8.3 64 176-247 100-165 (382)
178 4h7y_A Dual specificity protei 45.7 89 0.0031 26.8 8.2 96 140-248 33-128 (161)
179 3mkr_A Coatomer subunit epsilo 45.5 77 0.0026 28.8 8.7 66 175-247 132-199 (291)
180 1om2_A Protein (mitochondrial 43.8 21 0.00073 28.0 3.7 28 220-247 26-53 (95)
181 2xvc_A ESCRT-III, SSO0910; cel 40.8 42 0.0014 23.8 4.4 35 338-378 22-56 (59)
182 4g1t_A Interferon-induced prot 40.5 35 0.0012 32.6 5.7 71 175-246 53-126 (472)
183 1nzn_A CGI-135 protein, fissio 40.1 42 0.0014 27.6 5.2 35 212-246 72-106 (126)
184 2kc7_A BFR218_protein; tetratr 39.5 39 0.0013 24.4 4.7 31 218-248 4-34 (99)
185 2h6f_A Protein farnesyltransfe 36.4 67 0.0023 31.0 6.9 66 175-248 133-200 (382)
186 1wao_1 Serine/threonine protei 35.5 43 0.0015 33.2 5.6 59 182-248 15-74 (477)
187 1ouv_A Conserved hypothetical 35.0 90 0.0031 27.2 7.2 57 178-243 11-71 (273)
188 1ihg_A Cyclophilin 40; ppiase 33.1 1.1E+02 0.0037 29.1 7.8 74 175-248 225-307 (370)
189 2nsz_A Programmed cell death p 31.0 1.8E+02 0.006 23.5 7.7 87 289-378 17-119 (129)
190 3t5v_A Nuclear mRNA export pro 30.8 2.6E+02 0.0089 26.4 9.9 70 292-368 176-246 (316)
191 2kxw_B Sodium channel protein 30.5 30 0.001 20.7 2.0 17 142-158 5-21 (27)
192 3o48_A Mitochondria fission 1 30.2 49 0.0017 27.5 4.1 36 211-246 75-110 (134)
193 1xn7_A Hypothetical protein YH 28.2 91 0.0031 23.1 4.9 36 339-380 14-49 (78)
194 2hgc_A YJCQ protein; SR346, st 27.2 51 0.0018 26.1 3.5 36 358-394 27-62 (102)
195 3a4c_A DNA replication factor 26.9 1.7E+02 0.0057 23.3 6.4 50 318-369 12-61 (106)
196 2v79_A DNA replication protein 25.8 96 0.0033 25.5 5.2 36 338-379 48-83 (135)
197 3i4p_A Transcriptional regulat 25.8 78 0.0027 26.4 4.8 38 338-381 14-51 (162)
198 2hr2_A Hypothetical protein; a 25.6 1.5E+02 0.0051 25.1 6.5 33 214-246 11-43 (159)
199 2d58_A Allograft inflammatory 25.5 1.1E+02 0.0038 22.9 5.3 54 328-384 32-88 (107)
200 2ond_A Cleavage stimulation fa 25.4 2E+02 0.0068 25.8 7.9 76 175-259 136-214 (308)
201 1qgp_A Protein (double strande 25.2 94 0.0032 22.8 4.5 36 340-381 30-65 (77)
202 3mv2_B Coatomer subunit epsilo 24.7 4.1E+02 0.014 24.9 10.1 121 173-305 178-306 (310)
203 2r5s_A Uncharacterized protein 24.6 76 0.0026 25.9 4.4 34 214-247 108-141 (176)
204 2k02_A Ferrous iron transport 23.6 1E+02 0.0036 23.4 4.6 37 339-381 14-50 (87)
205 2r5s_A Uncharacterized protein 23.5 1.4E+02 0.0049 24.1 6.0 62 177-243 112-173 (176)
206 2ion_A PDCD4, programmed cell 23.4 2.7E+02 0.0092 23.2 7.7 87 289-378 19-121 (152)
207 1ouv_A Conserved hypothetical 23.4 2.2E+02 0.0075 24.5 7.6 58 178-245 151-217 (273)
208 3fbl_A Putative uncharacterize 23.1 64 0.0022 23.2 3.0 31 154-188 10-41 (82)
209 2pzi_A Probable serine/threoni 22.9 87 0.003 32.5 5.4 30 216-245 536-565 (681)
210 2l53_B CAM, voltage-gated sodi 21.4 54 0.0019 20.2 2.0 17 142-158 5-21 (31)
211 2heo_A Z-DNA binding protein 1 20.7 1.4E+02 0.0047 21.1 4.5 34 340-379 24-57 (67)
212 3qou_A Protein YBBN; thioredox 20.6 91 0.0031 28.1 4.4 72 181-259 125-196 (287)
213 2cfx_A HTH-type transcriptiona 20.3 1.4E+02 0.0046 24.2 5.1 36 339-380 17-52 (144)
214 3mkq_B Coatomer subunit alpha; 20.2 1.2E+02 0.0041 26.3 4.8 48 180-239 12-59 (177)
215 3bua_E HSNM1B, DNA cross-LINK 20.0 72 0.0025 19.9 2.3 22 251-272 3-25 (36)
No 1
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-84 Score=663.86 Aligned_cols=387 Identities=19% Similarity=0.230 Sum_probs=338.6
Q ss_pred ChhHHHHHHHHHHHHhcCChHHHhchhCCcCCCCcc--cccc-----ccc--hHHHHHhhcc----CCHHHHHHHHHHHH
Q psy9768 1 MSAVERYLQRVKMVWEGRDSNGLSVCFSFKNPTFKH--EDFQ-----KNV--EDYVIRRYLE----HPIFELVSAHLKCV 67 (406)
Q Consensus 1 M~~l~~yl~~v~~a~~~~dg~~l~~lls~~~~~~~~--~~~~-----~~~--~~~~~~~~~~----~~~~evv~~~lk~~ 67 (406)
|+.+++|+++|.+ |. ..+|+++++..+. ..++ .++ -+..++...+ ++|.++|.+|++++
T Consensus 1 m~~~~~fl~~i~~------~~--~~~l~~~~~~~~~~~~~l~~~l~~~~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~ 72 (455)
T 3t5v_B 1 MDMANQLLDELAH------GN--FSHLTLNLSQNGREIAILQKQLTGFDDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA 72 (455)
T ss_dssp -CCHHHHHHHHHH------TC--CSSCCSCSSSSHHHHHHHHHHHHHSCHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHh------cc--cceEEeCCCCCchHHHHHHHHHhcCCHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence 8999999999998 33 8999998764221 1111 111 1233444432 47889999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCccc---hHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHH
Q psy9768 68 QSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWL---LPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALET 144 (406)
Q Consensus 68 ~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~---lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~ 144 (406)
+++++||+.++|+.+.+++++++++|.+. ..+|+ +|+++..++.|+.+|.++|++... .+ ..+.+.+|+
T Consensus 73 rdv~~~sl~~s~dll~~~~~~l~~a~~~~-~~~wi~~l~p~~~~~~~~l~~~a~~lD~~~~~------~~-~~~~~~le~ 144 (455)
T 3t5v_B 73 RDVDPWSAWSSSDLIFEFYQCLINCLIND-NAPHIEMLIPVATRETEFIINLAGKLDSFHLQ------LH-TRSHQFLSH 144 (455)
T ss_dssp HHCCTTCSSTTHHHHHHHHHHHHTTSSST-TCTTHHHHHHHHHHHHHHHHHHHHHHHHTHHH------HT-CCTTHHHHH
T ss_pred HhCCcchHHHHHHHHHHHHHHHHHHHcCC-CCchHHHhHHHHHHHHHHHHHHHHHhhhhHhh------hc-ccchhHHHH
Confidence 99999999999999999999999999987 57998 888888889999999999999854 12 234589999
Q ss_pred HHHHHHHHHhhhhcCCCCCCccc---chhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCC---CCCCCCcchhhHHhh
Q psy9768 145 TTEMLMTCFRICTSDNRTSENDS---KKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQ---YKDKSSLSQQITYKY 218 (406)
Q Consensus 145 ~a~~i~~~F~~c~~D~~~~~~~s---Kk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~---~~~~~~~~~~vty~Y 218 (406)
||++|+++|++|++||+++.++| ||||+++++|+|||+|||+|+++||++++++++++. ..+.||++|+|||+|
T Consensus 145 ~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~Y 224 (455)
T 3t5v_B 145 ISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRY 224 (455)
T ss_dssp HHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeH
Confidence 99999999999999999887777 999999999999999999999999999999999873 467899999999999
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHH-hccc-----chHHHHHHHHHHHHHHHhcCCCCChhhhch---hchhh-hHHHHH
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQR-CHKS-----SKKNKRLILIYLVPVKMLLGFMPTRELLDK---YDLLQ-LWDVTV 288 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~-c~~~-----~~~nk~~IL~yLIp~~lllG~~P~~~ll~~---~~l~~-y~~l~~ 288 (406)
|+||+++++++|.+|+++|++||++ ||.+ +.+||++||+||||++|++|++|++.++++ +.+.+ |.+|++
T Consensus 225 YlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~~~~L~~~y~~L~~ 304 (455)
T 3t5v_B 225 LLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFLSQETIDNWSVLYK 304 (455)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccchHHHHHHHHHHHH
Confidence 9999999999999999999999999 9987 479999999999999999999999999998 45666 999999
Q ss_pred HHHhCCHHHHHHHHHHhHHHHHHhcH-HHHHHhhHHHHHHHHHHHH---HhcC-CCccccHHHHHHHhccccCC------
Q psy9768 289 AVKGGQINQLSDAMTKHQTFFIKCGI-YLILEKLKMITYRNFYNIH---KDIN-KNSVVELQQFLQALHYVEGK------ 357 (406)
Q Consensus 289 aik~Gnl~~f~~~l~~~~~~f~~~gl-yl~lerlr~lv~rnL~kkv---~~~~-~~~~i~l~~~~~al~~~~~~------ 357 (406)
|||+||+.+|++++++|+.+|+++|+ |++++|+|.+|||||+||| |.+. ++++||+++|+.|+++++.+
T Consensus 305 AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~ 384 (455)
T 3t5v_B 305 HVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPG 384 (455)
T ss_dssp HHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTT
T ss_pred HHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccc
Confidence 99999999999999999999999999 8999999999999999999 7774 45999999999999986432
Q ss_pred ---------CCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC----CCCCCccccc
Q psy9768 358 ---------HIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT----DPFPKLSAIA 403 (406)
Q Consensus 358 ---------~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~----~pFP~~~~~~ 403 (406)
++|+||||||+||||++|+|||||+|+++++|+||+ +|||+++++.
T Consensus 385 ~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~~~~~~pFP~l~~~~ 443 (455)
T 3t5v_B 385 AQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKTTMIQEIVPPVNERI 443 (455)
T ss_dssp CCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCCSCGGGTSCCHHHHH
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCCCCCCCCCCChHHHH
Confidence 268999999999999999999999999999999999 9999998763
No 2
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=100.00 E-value=2.5e-61 Score=446.50 Aligned_cols=201 Identities=56% Similarity=0.968 Sum_probs=191.4
Q ss_pred CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCChhhhchhchhh
Q psy9768 203 QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYDLLQ 282 (406)
Q Consensus 203 ~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~l~~ 282 (406)
++.+.||++|+|||+||+||+++++++|.+|+++|++||++||+++.+||++||+||||++|++|++|+++++++|++.+
T Consensus 3 ~~~~~~~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll~~~~~~~ 82 (203)
T 3t5x_A 3 HMKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQ 82 (203)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHHHHHTTCGG
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHhhhCchhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHH
Q psy9768 283 LWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLE 362 (406)
Q Consensus 283 y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~d 362 (406)
|.+|++|||+||+.+|++++++|+++|+++|+|++++|+|.+|+|||+||||.+.++++||+++|+.|++++|.+++|+|
T Consensus 83 y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~~ 162 (203)
T 3t5x_A 83 FAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDID 162 (203)
T ss_dssp GHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999988889999
Q ss_pred HHHHHHHHHHHcCceeEEEecCCcEEEEcCCCCCCCccccc
Q psy9768 363 DTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPFPKLSAIA 403 (406)
Q Consensus 363 evEcilanLI~~g~IkGyIsh~~~~lVlSk~~pFP~~~~~~ 403 (406)
|||||+|+||++|+|||||+|+++++|+||+||||++++|+
T Consensus 163 evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~pFP~l~~~~ 203 (203)
T 3t5x_A 163 EVQCILANLIYMGHVKGYISHQHQKLVVSKQNPFPPLSTVC 203 (203)
T ss_dssp HHHHHHHHHHHHTSSCEEEETTTTEEEECSSCSSCCGGGTC
T ss_pred HHHHHHHHHHHcCceEEEEcccccEEEECCCCCCCCccccC
Confidence 99999999999999999999999999999999999999873
No 3
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-39 Score=334.30 Aligned_cols=234 Identities=17% Similarity=0.257 Sum_probs=204.8
Q ss_pred HHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhh
Q psy9768 145 TTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKA 224 (406)
Q Consensus 145 ~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~ 224 (406)
.-..++...|.+.-. . | ..|.-.+.|++++.|...|.++++..+++.... +....+.+|+++|+||.||++
T Consensus 210 ir~~Ll~~~rta~lr-~-D-----~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f--P~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 210 LRSTMMKFLKIASLK-H-D-----NETKAMLINLILRDFLNNGEVDSASDFISKLEY--PHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp HHTHHHHHHHHCCSC-S-S-----SCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS--CTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-c-C-----cchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC--CcccCCHHHHHHHHHHHHHHH
Confidence 344667777753321 1 1 136788999999999999999999999987652 233578899999999999999
Q ss_pred hhhccHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhcCCCCChhhhchhc----hhhhHHHHHHHHhCCHHHH
Q psy9768 225 MFDSDYKTANEYLTFAFQRCHKSS--KKNKRLILIYLVPVKMLLGFMPTRELLDKYD----LLQLWDVTVAVKGGQINQL 298 (406)
Q Consensus 225 ~~~~~~~~A~~~L~~A~~~c~~~~--~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~----l~~y~~l~~aik~Gnl~~f 298 (406)
+++++|.+|+++|++||++||.+. .++++.+++|+|||+|++|.+|++.++.++. +.+|.+|++|||.||+..|
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l~~~L~pY~~Lv~Avr~GdL~~F 360 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNMQKSLLPYYHLTKAVKLGDLKKF 360 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999764 5889999999999999999999999999987 4579999999999999999
Q ss_pred HHHHHHhHHHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCcee
Q psy9768 299 SDAMTKHQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLK 378 (406)
Q Consensus 299 ~~~l~~~~~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~Ik 378 (406)
++++++|+.+|+++|+|.+++|+|..|+|+++|++...+ ++||+++|...+++. +.+|+||++|+||.+|.|+
T Consensus 361 ~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~Y--srIsL~dIa~kL~L~-----s~eeaE~iVAkmI~dG~I~ 433 (523)
T 4b4t_S 361 TSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTY--KKISLRDICLKLNLD-----SEQTVEYMVSRAIRDGVIE 433 (523)
T ss_dssp HHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCS--SEECHHHHHHHHHHH-----HSSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCce
Confidence 999999999999999999999999999999999998854 899999999999873 2368999999999999999
Q ss_pred EEEecCCcEEEEcCCCC
Q psy9768 379 GYISLAHQKVVLSKTDP 395 (406)
Q Consensus 379 GyIsh~~~~lVlSk~~p 395 (406)
|+|+|++|+ |.||.+|
T Consensus 434 A~Idh~~g~-v~ske~~ 449 (523)
T 4b4t_S 434 AKINHEDGF-IETTELL 449 (523)
T ss_dssp CEECTTTCC-EECCSSS
T ss_pred EEEecCCCE-EEeCccc
Confidence 999999986 4566543
No 4
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.78 E-value=1.4e-16 Score=160.37 Aligned_cols=233 Identities=14% Similarity=0.151 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCC-CCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDK-SSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~-~~~~~~vty~YY~ 220 (406)
..+|...+.+.-+-|-.- | .+.-++-+.-+..++|+.++|+.-++..+....... ... .|..-+..++.|.
T Consensus 115 y~~a~~~i~~l~~~~~~~---d----d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~-~ai~~~p~i~a~i~~~~ 186 (394)
T 3txn_A 115 YTEALALGAQLLRELKKL---D----DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA-NAIYCPPKVQGALDLQS 186 (394)
T ss_dssp HHHHHHHHHHHHHHHTTS---S----CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc---c----cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh-ccCCCCHHHHHHHHHHh
Confidence 667777788877777542 1 156788889999999999999999998886654321 111 3456678999999
Q ss_pred hhhhh-hhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCChh-hh-----chh---chhhhHHHHHHH
Q psy9768 221 GRKAM-FDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRE-LL-----DKY---DLLQLWDVTVAV 290 (406)
Q Consensus 221 Gr~~~-~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~-ll-----~~~---~l~~y~~l~~ai 290 (406)
|++++ .+++|.+|..+|.+||..++......+..+++|++.|+|+++..|... ++ .+| .+..+..++.|+
T Consensus 187 Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~ 266 (394)
T 3txn_A 187 GILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEAS 266 (394)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHH
T ss_pred hHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHH
Confidence 99999 999999999999999999887777888999999999999998854432 11 112 234578999999
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhcH-----HHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHH
Q psy9768 291 KGGQINQLSDAMTKHQTFFIKCGI-----YLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTH 365 (406)
Q Consensus 291 k~Gnl~~f~~~l~~~~~~f~~~gl-----yl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devE 365 (406)
+.||+..|.++++.++..|..+.. -.+..+++..+++.+++ .+++|+++.++.+++ ++.+|+|
T Consensus 267 ~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~------pYsrIsl~~iA~~l~------ls~~evE 334 (394)
T 3txn_A 267 HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIE------PYSRVQVAHVAESIQ------LPMPQVE 334 (394)
T ss_dssp HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHT------TCSEEEHHHHHHHHT------CCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhH------hhceeeHHHHHHHHC------cCHHHHH
Confidence 999999999999998765555443 23344455544444443 679999999999994 4789999
Q ss_pred HHHHHHHHcCceeEEEecCCcEEEEcCCC
Q psy9768 366 CLLCNLIHDGQLKGYISLAHQKVVLSKTD 394 (406)
Q Consensus 366 cilanLI~~g~IkGyIsh~~~~lVlSk~~ 394 (406)
..++.||.+|.|.|.|++.+|+|++.+.+
T Consensus 335 ~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 335 KKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 99999999999999999999999997764
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.2e-14 Score=143.54 Aligned_cols=214 Identities=19% Similarity=0.248 Sum_probs=162.3
Q ss_pred hcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC-CCCCCCCcchhhHHhhh--hhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 170 WGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS-QYKDKSSLSQQITYKYY--VGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~~~~~~~~~~vty~YY--~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.+.+++-..+.+.|++.|+.+.|+.+++.++.. ...+..+ ..|.+.|| .|.++..+++|..++.+...++..++.
T Consensus 124 ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~--~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~ 201 (393)
T 4b4t_O 124 DGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP--LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEP 201 (393)
T ss_dssp CSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Confidence 478888999999999999999999999888753 1111222 23445555 577788899999999999999987663
Q ss_pred --cchHHHHHHHHHHHHHHHhcCC-CCCh-hhhchhc---------hhhhHHHHHHHHhCCHHHHHHHHHHhHHH--HHH
Q psy9768 247 --SSKKNKRLILIYLVPVKMLLGF-MPTR-ELLDKYD---------LLQLWDVTVAVKGGQINQLSDAMTKHQTF--FIK 311 (406)
Q Consensus 247 --~~~~nk~~IL~yLIp~~lllG~-~P~~-~ll~~~~---------l~~y~~l~~aik~Gnl~~f~~~l~~~~~~--f~~ 311 (406)
......+..+.|.+.+.+++|. +|.+ +++.... ...+.++.+++..||+..|++.++.|... ++.
T Consensus 202 ~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~ 281 (393)
T 4b4t_O 202 STSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILA 281 (393)
T ss_dssp SSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchh
Confidence 3346667777888888888764 6665 5554332 22377999999999999999998877653 556
Q ss_pred hcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEc
Q psy9768 312 CGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLS 391 (406)
Q Consensus 312 ~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlS 391 (406)
.+.-.+++++|.+++..++.. ..+..||++.++.+++ ++.+|||.+++++|++|+|+|+|++.+++|.++
T Consensus 282 ~~~~~l~~kirll~l~~l~~~----~~~~~i~f~~ia~~l~------i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~ 351 (393)
T 4b4t_O 282 QHESFLRQKICLMTLIETVFV----KNIRMLSFEDISKATH------LPKDNVEHLVMRAISLGLLKGSIDQVNELVTIS 351 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS----SSCCCEEHHHHHHHHT------CCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-
T ss_pred hhHHHHHHHHHHHHHHHHhcc----CCCCcCcHHHHHHHhC------cCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEE
Confidence 666667889999888776531 1346799999999995 578999999999999999999999999999988
Q ss_pred CCCC
Q psy9768 392 KTDP 395 (406)
Q Consensus 392 k~~p 395 (406)
...|
T Consensus 352 ~~~p 355 (393)
T 4b4t_O 352 WVQP 355 (393)
T ss_dssp ----
T ss_pred eccC
Confidence 7654
No 6
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.1e-13 Score=141.75 Aligned_cols=237 Identities=12% Similarity=0.136 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
..+|++++...-.-|.+- . .+.-..-+.....++|+..+++..++.+++.+........-|..-+..|+.|.|
T Consensus 153 ~~eA~~iL~~l~~Et~~~----~---~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~ 225 (445)
T 4b4t_P 153 IDEAADILCELQVETYGS----M---EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLV 225 (445)
T ss_dssp HHHHHHHHHHHHHHHCSS----S---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc----c---cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 677888888776655431 1 133456667789999999999999999998876432222234456789999999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHhcCCCCChh-hhchh-------chhhhHHHHHHHHh
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSK-KNKRLILIYLVPVKMLLGFMPTRE-LLDKY-------DLLQLWDVTVAVKG 292 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIp~~lllG~~P~~~-ll~~~-------~l~~y~~l~~aik~ 292 (406)
++++.+++|.+|..+|..+|...+.... ..+...|.+.|-+.++.+.-|... ++.+. .+..|..+.+++.+
T Consensus 226 ~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 226 KISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 9999999999999999999997775543 445668888888888877766543 33321 24568999999999
Q ss_pred CCHHHHHHHHHHhHHHHHHhcHH-------HHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHH
Q psy9768 293 GQINQLSDAMTKHQTFFIKCGIY-------LILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTH 365 (406)
Q Consensus 293 Gnl~~f~~~l~~~~~~f~~~gly-------l~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devE 365 (406)
+++..|..+++.++..+..+.+. ..+..++.-|.-.-++++.. .+++|+++.+...|. ++.+|+|
T Consensus 306 ~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k--~Ys~I~l~~la~lL~------l~~~evE 377 (445)
T 4b4t_P 306 NELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISE--YYSRITLLRLNELLD------LTESQTE 377 (445)
T ss_dssp CCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHH--HEEEEEHHHHHHHHT------SCHHHHH
T ss_pred chHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHH--HhceeeHHHHHHHhC------cCHHHHH
Confidence 99999999999987655444331 11222322232222233332 469999999999994 6889999
Q ss_pred HHHHHHHHcCceeEEEecCCcEEEEcCC
Q psy9768 366 CLLCNLIHDGQLKGYISLAHQKVVLSKT 393 (406)
Q Consensus 366 cilanLI~~g~IkGyIsh~~~~lVlSk~ 393 (406)
..++.||.+|.|.|+|++..|+|++.+.
T Consensus 378 ~~ls~mI~~g~i~akIDq~~giV~F~~~ 405 (445)
T 4b4t_P 378 TYISDLVNQGIIYAKVNRPAKIVNFEKP 405 (445)
T ss_dssp HHHHHHHHHTSSCCEEETTTTEEEC---
T ss_pred HHHHHHHHCCCEEEEEcCCCCEEEECCC
Confidence 9999999999999999999999998764
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.7e-11 Score=119.98 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++...|.... .+.....+.+.+.++|..+|++..++.+++...........|...+.+++.+.|
T Consensus 151 ~~~A~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g 223 (434)
T 4b4t_Q 151 YKDSLALINDLLREFKKLD-------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSG 223 (434)
T ss_dssp HHHHHHHHHHHHHHHTTSS-------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Confidence 5677788888877765421 244677788999999999999999999986654321111224455678999999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHHHHhcCCCCCh-hh------hchh---chhhhHHHH
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSS----KKNKRLILIYLVPVKMLLGFMPTR-EL------LDKY---DLLQLWDVT 287 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~----~~nk~~IL~yLIp~~lllG~~P~~-~l------l~~~---~l~~y~~l~ 287 (406)
+++..+++|.+|..++..||...+... .......+.|.+.+.++.+..+.. .. ...+ ....+..+.
T Consensus 224 ~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (434)
T 4b4t_Q 224 ILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVA 303 (434)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHH
Confidence 999999999999999999999876533 233445667777776665432211 11 1111 123477899
Q ss_pred HHHHhCCHHHHHHHHHHhHHHHHHhcHH-HHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHH
Q psy9768 288 VAVKGGQINQLSDAMTKHQTFFIKCGIY-LILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHC 366 (406)
Q Consensus 288 ~aik~Gnl~~f~~~l~~~~~~f~~~gly-l~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEc 366 (406)
.+...+++..|.++++.+...+..+... ..++.+...+....++++.. .+++|+++.+..+++ ++.+++|.
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~--~y~~i~l~~la~~l~------~~~~~~E~ 375 (434)
T 4b4t_Q 304 EAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIE--PFECVEISHISKIIG------LDTQQVEG 375 (434)
T ss_dssp HHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHS--SCSCEEHHHHHHHHT------CCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHhC------cCHHHHHH
Confidence 9999999999999999998776655542 33444444444333443333 579999999999994 57899999
Q ss_pred HHHHHHHcCceeEEEecCCcEEEEcC
Q psy9768 367 LLCNLIHDGQLKGYISLAHQKVVLSK 392 (406)
Q Consensus 367 ilanLI~~g~IkGyIsh~~~~lVlSk 392 (406)
.|++||.+|.|.|.|++..++|++..
T Consensus 376 ~l~~lI~~~~i~a~id~~~g~v~~~~ 401 (434)
T 4b4t_Q 376 KLSQMILDKIFYGVLDQGNGWLYVYE 401 (434)
T ss_dssp HHHHHHHHTSSCCEEETTTTEEECC-
T ss_pred HHHHHHhCCCcceecccccCeEeeCC
Confidence 99999999999999999999998854
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.38 E-value=3.2e-11 Score=122.77 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
+++|.+.+.+....|.+.+ -.+-+.-.++++|+..++...++..++.+.+.... .-....+..|+.|.|
T Consensus 147 ~~~A~~~~~~~~~~~~~~~----------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~-~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 147 KDNAEKTLGKSLSKAISTG----------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK-GGDWERRNRYKTYYG 215 (429)
T ss_dssp CTTHHHHHHHHHHHHTCCC----------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT-CCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChH----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc-CCCHHHHHHHHHHHH
Confidence 3446777777777776642 13445566789999999999999998887653111 112344568999999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCC--------CChhhhchhc----hhhhHHHHHH
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFM--------PTRELLDKYD----LLQLWDVTVA 289 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~--------P~~~ll~~~~----l~~y~~l~~a 289 (406)
++++..++|.+|..+|..+|..+..........+++|.+.+.|+.... -+.+...-.. +..+..++.+
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~ 295 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTIS 295 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHH
Confidence 999999999999999999999887766677778899999999886321 1222111111 2235667888
Q ss_pred HHhCCHHHHHHHHH-HhH-----HHHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHH
Q psy9768 290 VKGGQINQLSDAMT-KHQ-----TFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLED 363 (406)
Q Consensus 290 ik~Gnl~~f~~~l~-~~~-----~~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~de 363 (406)
+-.++...|-+.+. .++ +.|+..++-.+..++|..+++.+++ .+++|.++.++.+|. ++.++
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir~~~l~q~~~------~Ys~I~l~~mA~~l~------~s~~~ 363 (429)
T 4b4t_R 296 LYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMRRKVYAQLLE------SYKTLSLKSMASAFG------VSVAF 363 (429)
T ss_dssp HHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHHHHHHHHHHH------TCSEEEHHHHHHHHT------SCHHH
T ss_pred HHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHhH------HhceeeHHHHHHHhC------cCHHH
Confidence 89999999876654 332 4677888878889999999988888 689999999999994 57899
Q ss_pred HHHHHHHHHHcCceeEEEecCCcEEEEcCCCC
Q psy9768 364 THCLLCNLIHDGQLKGYISLAHQKVVLSKTDP 395 (406)
Q Consensus 364 vEcilanLI~~g~IkGyIsh~~~~lVlSk~~p 395 (406)
+|..+++||.+|.|.|.|+..+|+|+..+.++
T Consensus 364 ~E~~L~~lI~~g~l~akID~~~giv~~~~~d~ 395 (429)
T 4b4t_R 364 LDNDLGKFIPNKQLNCVIDRVNGIVETNRPDN 395 (429)
T ss_dssp HHHHHHHHHHHTSSCEEEETTTTEEEECC---
T ss_pred HHHHHHHHHHcCCeEEEEcCCCCEEEECCCCc
Confidence 99999999999999999999999999876543
No 9
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.56 E-value=1e-06 Score=82.15 Aligned_cols=180 Identities=7% Similarity=-0.022 Sum_probs=131.9
Q ss_pred HHHHHhcCChhhHHHHHHHhccC----C-CCCCCCcch--hhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc---h
Q psy9768 180 FKVYFRISKLHLMKPLIRAIESS----Q-YKDKSSLSQ--QITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS---K 249 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i~~~----~-~~~~~~~~~--~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~---~ 249 (406)
++-+|.-++++.|..+++.+.-. + +.+..+..+ ..++-|+.|....++.+..+|++....+++..+.+. .
T Consensus 14 L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s 93 (229)
T 4b0z_A 14 LADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPS 93 (229)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCC
Confidence 56677889999999999987521 1 222333333 578999999999999999999999999999887653 4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCChhh-hc---------hhc-hhhhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcHHHHH
Q psy9768 250 KNKRLILIYLVPVKMLLGFMPTREL-LD---------KYD-LLQLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGIYLIL 318 (406)
Q Consensus 250 ~nk~~IL~yLIp~~lllG~~P~~~l-l~---------~~~-l~~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~glyl~l 318 (406)
+|+..++.|-+...|..|++|.+.. ++ +-+ +.....+.+|+..||..+|-+..++........=+..++
T Consensus 94 ~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~ 173 (229)
T 4b0z_A 94 SRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVM 173 (229)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHH
Confidence 6888899888888888898876532 11 111 123468999999999999999998764322222233467
Q ss_pred HhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHHH
Q psy9768 319 EKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCN 370 (406)
Q Consensus 319 erlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcilan 370 (406)
+++|.-+.+.+.| .+++||++.++.-|.+. +.+|++..+..
T Consensus 174 ~~vR~~~l~~i~k------aY~~i~l~~~~~~L~f~-----s~~e~~~f~~~ 214 (229)
T 4b0z_A 174 SMVRNEIATCAEK------VYSEIPLSNATSLLYLE-----NTKETEKLAEE 214 (229)
T ss_dssp HHHHHHHHHHHHH------HCSEEEHHHHHHHTTCS-----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HcCCCCHHHHHHHhCCC-----CHHHHHHHHHH
Confidence 8888888777665 34789999999998762 56888888776
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.11 E-value=1.3e-05 Score=71.19 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhcH-HHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCC
Q psy9768 282 QLWDVTVAVKGGQINQLSDAMTKHQTFFIKCGI-YLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHID 360 (406)
Q Consensus 282 ~y~~l~~aik~Gnl~~f~~~l~~~~~~f~~~gl-yl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~ 360 (406)
.+.++.+++-.||+..|++.-+.+. ++ -.+.+|+|.+++-.|..+ ...||++.+..++++. +
T Consensus 61 ~~~~LL~iF~~G~~~~y~~~~~~~p------~L~~~~~~KlrlLtL~sLa~~------~~~lsy~~I~~~l~i~-----~ 123 (169)
T 3chm_A 61 VYLDLLRLFAHGTWGDYKCNATRLP------HLSPDQILKLKQLTVLTLAES------NKVLPYDTLMVELDVS-----N 123 (169)
T ss_dssp HHHHHHHHHHHCCHHHHHHHGGGSC------CCCHHHHHHHHHHHHHHHHHH------CSEEEHHHHHHHHTCC-----S
T ss_pred HHHHHHHHHhcCCHHHHHHhHHhCc------chHHHHHHHHHHHHHHHHHHh------CCCcCHHHHHHHhCCC-----C
Confidence 4789999999999999998544332 22 345689999999888874 4689999999999651 3
Q ss_pred HHHHHHHHH-HHHHcCceeEEEecCCcEEEEcCC
Q psy9768 361 LEDTHCLLC-NLIHDGQLKGYISLAHQKVVLSKT 393 (406)
Q Consensus 361 ~devEcila-nLI~~g~IkGyIsh~~~~lVlSk~ 393 (406)
.+|||.++. .+|+.|+|+|+|+..++++.++..
T Consensus 124 ~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~ 157 (169)
T 3chm_A 124 VRELEDFLINECMYAGIVRGKLDQLKRCFEVPFA 157 (169)
T ss_dssp HHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEee
Confidence 799999999 999999999999999999998864
No 11
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.72 E-value=0.00012 Score=57.26 Aligned_cols=53 Identities=13% Similarity=0.273 Sum_probs=48.3
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCCCC
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTDPF 396 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~pF 396 (406)
.+++|.++.+...|. ++.+++|.++++||.+|.|.|+|+...++|++.+.+|.
T Consensus 27 ~Y~~Isl~~La~ll~------ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 27 LYNNITFEELGALLE------IPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp SCSEEEHHHHHHHTT------SCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred hcCeeeHHHHHHHHC------cCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 469999999999984 57899999999999999999999999999999887764
No 12
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.63 E-value=2.3 Score=39.20 Aligned_cols=216 Identities=11% Similarity=-0.029 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCC
Q psy9768 56 IFELVSAHLKCVQSIQ-ANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNS 134 (406)
Q Consensus 56 ~~evv~~~lk~~~~i~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~ 134 (406)
|++-+..|-+...... .+++.+|.+.+.+.+....+ .++.. ..+..+..+|....+. |
T Consensus 33 ~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~-------~~a~~~~~lg~~~~~~----------g 91 (292)
T 1qqe_A 33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK----AGNED-------EAGNTYVEAYKCFKSG----------G 91 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHH----TTCHH-------HHHHHHHHHHHHHHHT----------T
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----hCCHH-------HHHHHHHHHHHHHHHC----------C
Confidence 5555555555543333 57888888888777654322 11111 1122233333332111 1
Q ss_pred CCCcchhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhc-CChhhHHHHH-HHhccCCCCCCCCcch
Q psy9768 135 GAKPRDALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRI-SKLHLMKPLI-RAIESSQYKDKSSLSQ 212 (406)
Q Consensus 135 ~~~~~~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl-~~~~l~~~~~-~~i~~~~~~~~~~~~~ 212 (406)
..++|...+.++....... ....+.....+.+-.+|.+. |+++.+-..+ ++++-.+-.. ....
T Consensus 92 ------~~~~A~~~~~~Al~l~~~~-------g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~ 156 (292)
T 1qqe_A 92 ------NSVNAVDSLENAIQIFTHR-------GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVAL 156 (292)
T ss_dssp ------CHHHHHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHH
T ss_pred ------CHHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHH
Confidence 1455555555555543322 12334455666778899995 9999886665 4444221110 1112
Q ss_pred hhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchH--HHHHHHHHHHHHHHhcCCCCCh-hhhchh-------c---
Q psy9768 213 QITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKK--NKRLILIYLVPVKMLLGFMPTR-ELLDKY-------D--- 279 (406)
Q Consensus 213 ~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~--nk~~IL~yLIp~~lllG~~P~~-~ll~~~-------~--- 279 (406)
....+.-+|.+++-.++|.+|.+++..|...+|..... .....+.-+.-+.+-+|.+... ..++++ .
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 23456778999999999999999999999998875431 2222334444455556664432 122221 0
Q ss_pred -hhhhHHHHHHHHhCCHHHHHHHHHHhHH
Q psy9768 280 -LLQLWDVTVAVKGGQINQLSDAMTKHQT 307 (406)
Q Consensus 280 -l~~y~~l~~aik~Gnl~~f~~~l~~~~~ 307 (406)
...+..+..++..||...|+++++.++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 1124567888999999999999998743
No 13
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.42 E-value=0.84 Score=37.82 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+...+-.+|+++|+++.|...+ ++++-.| ..+..+|..|..++..++|.+|..+|..|+...|.+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREE--------TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3445667788899999999887665 4444322 1245679999999999999999999999999988654
No 14
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.41 E-value=2.2 Score=32.51 Aligned_cols=67 Identities=7% Similarity=-0.103 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.++++.+...+...-... |.. ....+.+|.++...+++.+|.+++..|+...|...
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 114 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICID-----PAY--SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcC-----ccC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccch
Confidence 34556778899999999988775533211 111 35678999999999999999999999999887643
No 15
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.38 E-value=3.3 Score=32.62 Aligned_cols=96 Identities=8% Similarity=-0.033 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.+.+.++...+..... ..........+-.+|+..|+++.+...+.. ++..+. .-.........+.+
T Consensus 65 ~~~A~~~~~~a~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~l 135 (164)
T 3ro3_A 65 FETASEYYKKTLLLARQLKD-------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--LKDRIGEGRACWSL 135 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--ccchHhHHHHHHHH
Confidence 45556666666655433211 223444556778899999999998777644 332110 11123445677889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
|.++...+++.+|.+++..|+..+..
T Consensus 136 a~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 136 GNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987654
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=92.33 E-value=4.6 Score=38.29 Aligned_cols=174 Identities=9% Similarity=0.037 Sum_probs=103.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchh
Q psy9768 62 AHLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDA 141 (406)
Q Consensus 62 ~~lk~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~ 141 (406)
.+++.......+++.+|...+.+.+.. +...++..+. +..+..+|...-. . ..
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~-------a~~~~~lg~~~~~----------~------~~ 158 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESK----LIFVKDRIEK-------AEFFFKMSESYYY----------M------KQ 158 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCHHHH-------HHHHHHHHHHHHH----------T------TC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHH----HhhCCCHHHH-------HHHHHHHHHHHHH----------c------CC
Confidence 344555555678999988877776643 2222111111 2222233322211 1 11
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... ....+.....+.+-.+|..+|+++.+...+. +++-.+-. -........++.+
T Consensus 159 ~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 230 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHE------AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCS------TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence 4566666666666654331 1234556677888899999999999977664 44322111 1122344567889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHhcCCCC
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSSK-KNKRLILIYLVPVKMLLGFMP 270 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~-~nk~~IL~yLIp~~lllG~~P 270 (406)
|.++...++|.+|.+++..|+..+..... .+.-.++..|--+-.-+|+..
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 281 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKID 281 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999998765443 444455555555555556643
No 17
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=92.14 E-value=1.4 Score=34.96 Aligned_cols=97 Identities=10% Similarity=0.043 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.+++...+.++...+.... .........+.+-.+|+..|+++.+...++.. +-.+. .-.........+.+
T Consensus 25 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 25 FRDAVIAHEQRLLIAKEFG-------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hCCcHHHHHHHHHH
Confidence 4566666666666543321 13445567778889999999999998876543 22110 11123446677899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.++...++|.+|.+++..|+..++..
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~ 122 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQEL 122 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999987654
No 18
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=91.63 E-value=4.4 Score=38.48 Aligned_cols=173 Identities=9% Similarity=-0.045 Sum_probs=101.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhH
Q psy9768 63 HLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDAL 142 (406)
Q Consensus 63 ~lk~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~l 142 (406)
+++.......+++.+|...+.+.+.. +...++. | ..+..+..+|...-. .| ..
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~----~---~~a~~~~~lg~~y~~----------~~------~~ 157 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKE----LPFVSDD----I---EKAEFHFKVAEAYYH----------MK------QT 157 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT----GGGCCCH----H---HHHHHHHHHHHHHHH----------TT------CH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHH----HhhCCCh----H---HHHHHHHHHHHHHHH----------cC------Cc
Confidence 44555555678899988877776543 2222111 1 112222333322211 11 14
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 143 ETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 143 e~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
++|...+.++........ ....+.....+.+-.+|+++|+++.+...+ ++++-.+-. -........++.+|
T Consensus 158 ~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg 229 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHP------LYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIA 229 (378)
T ss_dssp HHHHHHHHHHHHHHHTST------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------CchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 555555555555543321 112356667778888999999999997765 444422100 01124456778899
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCC
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMP 270 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P 270 (406)
.++...++|.+|.+++..|+..+.....+..-.++..|--+..-+|+..
T Consensus 230 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 278 (378)
T 3q15_A 230 NSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQ 278 (378)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999997765444444445555555555556644
No 19
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.44 E-value=0.89 Score=34.81 Aligned_cols=65 Identities=9% Similarity=0.039 Sum_probs=50.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccch
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSK 249 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 249 (406)
..+-.+|++.|+++-+...++. ++..|. ....+|++|.++...+++.+|.+.+..|+..++....
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3455678999999999887754 443221 1346789999999999999999999999999886543
No 20
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=91.35 E-value=8.3 Score=35.12 Aligned_cols=98 Identities=12% Similarity=0.085 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++....... ....+...+.+.+-.+|+++|+++.+...+.. ++...-.. -.....+..+|.+
T Consensus 131 ~~~Ai~~~~~al~~~~~~-------~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~nl 202 (293)
T 3u3w_A 131 YEYCILELKKLLNQQLTG-------IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHHHHHHHHHHTCCCC-------SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-------ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cchhHHHHHHHHH
Confidence 566666666666532111 11245666788999999999999998777644 33110000 1234567788999
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.++...++|.+|.+++..|+..++..
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988754
No 21
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=91.11 E-value=4.9 Score=35.92 Aligned_cols=100 Identities=12% Similarity=0.109 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC-C-----------------
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS-Q----------------- 203 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~----------------- 203 (406)
.++|...+.++...+...... ...........+-.+|++.|+++.+...++..-.. +
T Consensus 169 ~~~A~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 169 YEEVEYYYQRALEIYQTKLGP-----DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTSCT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 566667777776665432111 12234556677888999999999998776443210 0
Q ss_pred ----------------C------CCC--CCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 204 ----------------Y------KDK--SSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 204 ----------------~------~~~--~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
. ... -........++.+|.++...|++.+|.+++..|+...|+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0 000 012445677889999999999999999999999987654
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=90.90 E-value=2.6 Score=34.76 Aligned_cols=87 Identities=9% Similarity=0.025 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++....-.+ ......+-.+|+++++++.+...++. ++..|. ....+|.+
T Consensus 27 ~~~A~~~~~~al~~~p~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l 85 (164)
T 3sz7_A 27 YSKAIDLYTQALSIAPAN-------------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--------YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHSTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcC-------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHH
Confidence 566777666666542111 23445667789999999999877654 443221 25678999
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccch
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSSK 249 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 249 (406)
|.+++..++|.+|.++|..|+...|....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999987654
No 23
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.80 E-value=0.8 Score=37.98 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~Y 218 (406)
..++++...+.++... +...-...+. +=++|++.|+++.+...++. ++-.|- -...++
T Consensus 11 ~~~e~ai~~~~~a~~~---------~p~~~~~~~~----la~~y~~~~~~~~A~~~~~~al~~~p~--------~~~a~~ 69 (150)
T 4ga2_A 11 ADVERYIASVQGSTPS---------PRQKSIKGFY----FAKLYYEAKEYDLAKKYICTYINVQER--------DPKAHR 69 (150)
T ss_dssp HHHHHHHHHHHHHSCS---------HHHHHTTHHH----HHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHH
T ss_pred ChHHHHHHHHHHhccc---------CcccHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHH
Confidence 4567776666654331 1112222333 44679999999999887754 443321 145779
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+|.++...+++.+|.+++..|++..|...
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999988654
No 24
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.25 E-value=1.3 Score=35.53 Aligned_cols=86 Identities=8% Similarity=-0.056 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.....++... | ++ . ......+-.+|+++|+++.+-..+ ++++-.|. -+..+|.+
T Consensus 29 ~~~A~~~~~~al~~---~--p~-----~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~l 87 (126)
T 4gco_A 29 YPTAMRHYNEAVKR---D--PE-----N---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--------FIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHHHH---C--TT-----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHH
T ss_pred HHHHHHHHHHHHHh---C--CC-----C---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--------hhHHHHHH
Confidence 67777766666654 2 11 1 123345667899999999987665 44543221 24567899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.++...++|.+|.++|..|++..|.+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 9999999999999999999999988654
No 25
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=89.92 E-value=3.4 Score=31.73 Aligned_cols=66 Identities=12% Similarity=0.010 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.++++.+...+.. ++..+ . .....+.+|.+++..+++.+|.++|..|+...|...
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 118 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLEP------T--FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCK 118 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHCT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC------C--chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCch
Confidence 445666789999999999887754 33222 1 245678999999999999999999999999988654
No 26
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=89.92 E-value=1.9 Score=33.89 Aligned_cols=85 Identities=9% Similarity=0.092 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++....-.+ ......+-.+|+++++++.+...++.. +..| . ....+|.+
T Consensus 25 ~~~A~~~~~~al~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~--~~~~~~~l 83 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLV-------------AVYYTNRALCYLKMQQPEQALADCRRALELDG------Q--SVKAHFFL 83 (137)
T ss_dssp HHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHH
T ss_pred HHHHHHHHHHHHhhCcCc-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------h--hHHHHHHH
Confidence 566666666665542110 234556677899999999998776543 3222 1 24577899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.++...++|.+|.+++..|+...|..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 999999999999999999999998873
No 27
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=89.86 E-value=9.4 Score=35.52 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... ...........+-.+|++.|+++.+...+... +-.+- .-.........+.+
T Consensus 203 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l 273 (406)
T 3sf4_A 203 FRDAVIAHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ--LKDRAVEAQSCYSL 273 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--CcCchHHHHHHHHH
Confidence 5666666677666654431 13345566777888999999999998877543 22111 11223446777899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.++...+++.+|.+++..|+...+..
T Consensus 274 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 274 GNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987754
No 28
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.86 E-value=0.85 Score=35.70 Aligned_cols=67 Identities=6% Similarity=0.023 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.....+-.+|+++|+++-+...++. ++..| .. ...++++|..+...|++.+|.+.|..|+...|.+.
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFP------NH--QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------Cc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 3445667789999999999887755 34322 12 45678899999999999999999999999888653
No 29
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.72 E-value=5.7 Score=34.72 Aligned_cols=141 Identities=11% Similarity=0.040 Sum_probs=83.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHHH
Q psy9768 72 ANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLMT 151 (406)
Q Consensus 72 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~~ 151 (406)
.+++.+|...+.+.+...-+..... ..... ..+..+|... . . . ...++|...+.+
T Consensus 98 ~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~-------~~~~~la~~~---~-~------~------g~~~~A~~~~~~ 152 (283)
T 3edt_B 98 RGKYKEAEPLCKRALEIREKVLGKF--HPDVA-------KQLNNLALLC---Q-N------Q------GKAEEVEYYYRR 152 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTT--CHHHH-------HHHHHHHHHH---H-T------T------TCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHcCCC--ChHHH-------HHHHHHHHHH---H-H------c------CCHHHHHHHHHH
Confidence 5788888888888776655543321 11111 1122222221 1 0 1 125666677777
Q ss_pred HHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccC---CCC----------------------
Q psy9768 152 CFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESS---QYK---------------------- 205 (406)
Q Consensus 152 ~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~---~~~---------------------- 205 (406)
+...+.....+ ...........+-.+|++.|+++.+...+... +.. ...
T Consensus 153 al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (283)
T 3edt_B 153 ALEIYATRLGP-----DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK 227 (283)
T ss_dssp HHHHHHHHSCT-----TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc
Confidence 76664332111 12234456667889999999999888776443 210 000
Q ss_pred --------------CCC--CcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHH
Q psy9768 206 --------------DKS--SLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQ 242 (406)
Q Consensus 206 --------------~~~--~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~ 242 (406)
... ...+....++.+|.++...|++.+|.+.+..|++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 228 RRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000 1244566788899999999999999999999986
No 30
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=89.70 E-value=6.1 Score=36.85 Aligned_cols=121 Identities=11% Similarity=0.021 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++........ ...........+-.+|.+.|+++.+...+... +-.+- .-.........+.+
T Consensus 243 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLK-------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE--LNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCc-------CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHH
Confidence 5666666776666554321 23455666778889999999999998776543 32110 11133446677899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhcCCCCC
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS-KKNKRLILIYLVPVKMLLGFMPT 271 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~-~~nk~~IL~yLIp~~lllG~~P~ 271 (406)
|.++...|++.+|.+++..|+..++... ......++..|.-+...+|...+
T Consensus 314 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 314 GNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999999999999999999888654 34455566667666666776543
No 31
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.61 E-value=8.1 Score=32.17 Aligned_cols=99 Identities=8% Similarity=-0.056 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.+.+.++...+.... ...+......+.+-.+|++.|+++-+...+.. ++..+. .-........++.+
T Consensus 82 ~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLP------EDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQ--ADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHH
Confidence 5666666777766654321 12335566777888999999999998777644 332110 01112334556889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.++...|++.+|.+++..|+..+....
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999887644
No 32
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=89.44 E-value=1.4 Score=33.86 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++.... ++ . ......+-.+|++.|+++.+...+... +..+.. .-.........|.+
T Consensus 20 ~~~A~~~~~~a~~~~-----~~-----~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 85 (131)
T 1elr_A 20 FDTALKHYDKAKELD-----PT-----N---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHHHHC-----TT-----C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----Cc-----c---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHH
Confidence 566666666665542 11 0 123456677899999999998877553 322111 00111225667899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
|.++...+++.+|.+++..|+...|.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999998763
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.36 E-value=10 Score=32.98 Aligned_cols=145 Identities=10% Similarity=0.016 Sum_probs=86.4
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhHHHHHHHHH
Q psy9768 71 QANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDALETTTEMLM 150 (406)
Q Consensus 71 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~le~~a~~i~ 150 (406)
..+++.+|...+.+.+....+.+.. +..+... .+..+|...-. . ...++|...+.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~-------~~~~l~~~~~~----------~------g~~~~A~~~~~ 109 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGK--DHPAVAA-------TLNNLAVLYGK----------R------GKYKEAEPLCK 109 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCT--TCHHHHH-------HHHHHHHHHHT----------T------TCHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCC--cchHHHH-------HHHHHHHHHHH----------h------ccHHHHHHHHH
Confidence 3678999998888888765554332 1122112 22222222210 1 11455555555
Q ss_pred HHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC--CCCCCCCcchhhHHhhhhhhhhhhhc
Q psy9768 151 TCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS--QYKDKSSLSQQITYKYYVGRKAMFDS 228 (406)
Q Consensus 151 ~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~--~~~~~~~~~~~vty~YY~Gr~~~~~~ 228 (406)
++...+.....+ ...........+-.+|++.|+++.+...+...-.. .... -.....+...+.+|.++...+
T Consensus 110 ~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 110 RALEIREKVLGK-----FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG-PDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC-----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcC
Confidence 555544221010 11234556677788999999999998876543221 0000 012344667789999999999
Q ss_pred cHHHHHHHHHHHHHHhcc
Q psy9768 229 DYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 229 ~~~~A~~~L~~A~~~c~~ 246 (406)
++.+|.+++..|+..++.
T Consensus 184 ~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
No 34
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.26 E-value=4.3 Score=33.95 Aligned_cols=96 Identities=8% Similarity=-0.038 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCC--cchhhHHhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSS--LSQQITYKY 218 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~--~~~~vty~Y 218 (406)
.++|...+.++...+.... .........+.+-.+|...|+++-+...+.. ++-.. ..+ ........+
T Consensus 42 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 42 FDEARASFQALQQQAQKSG-------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLA---SLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcCccHHHHHHHHH
Confidence 4566666666666554321 2345566677888999999999998777644 33211 111 124566788
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+|.++...+++.+|.+++..|+..++..
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 140 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQA 140 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999987653
No 35
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=89.01 E-value=9.4 Score=34.03 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... ...........+-.+|++.|+++.+...+... +..+-. -.........+.+
T Consensus 199 ~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 269 (338)
T 3ro2_A 199 FRDAVIAHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSL 269 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHH
Confidence 4556666666666554321 13345556777888999999999998877543 221111 1123446677889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.++...+++.+|.+++..|+...+..
T Consensus 270 a~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 270 GNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999987754
No 36
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=88.84 E-value=4.9 Score=30.76 Aligned_cols=66 Identities=6% Similarity=-0.172 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
-...+-..|++.++++.+...+...-... |. -....+..|.+++..+++.+|.+.+..|+...|..
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-----PK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-----TT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 33445667899999999988776543321 11 14567899999999999999999999999987653
No 37
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=88.67 E-value=2.2 Score=31.97 Aligned_cols=63 Identities=6% Similarity=-0.067 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-..|++.|+++-+...++. ++..|. . ...++..|.+++..++|.+|.+++..|+...|..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQ------N--PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT------C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------C--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 3455688999999998777654 443221 1 4567899999999999999999999999998875
No 38
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=88.67 E-value=2.5 Score=30.46 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+-.+|++.++++.+...++. ++..| . .....+.+|.+++..+++.+|.+++..|+...|...
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 77 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDP------N--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC------C--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH
Confidence 34456678999999998877654 33322 1 135678999999999999999999999999877543
No 39
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=88.58 E-value=2.1 Score=35.40 Aligned_cols=63 Identities=8% Similarity=-0.038 Sum_probs=49.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-.+|+++|+++-+...++. +.-.|. -...+|++|.+++..|++.+|.++|..|+...|.+
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIX--------EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567789999999999877755 333221 12457899999999999999999999999998864
No 40
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.57 E-value=2.1 Score=33.02 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.|+++-+...++. ++..| +....+|.+|.++...+++.+|.+.|..|+...|...
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDP--------TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 344566789999999999877754 44322 1245668999999999999999999999999888643
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=88.55 E-value=7.5 Score=36.66 Aligned_cols=97 Identities=10% Similarity=0.029 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... ...........+-.+|.+.|+++.+...+... +..+- .-.........+.+
T Consensus 239 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l 309 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFG-------DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE--LGEREVEAQSCYSL 309 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 5666666777766654421 13345566778889999999999998877543 32211 11123446777899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.++...+++.+|.+++..|+..++..
T Consensus 310 a~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 310 GNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999987754
No 42
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=88.46 E-value=1.4 Score=34.30 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=50.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcc-hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLS-QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~-~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+-.+|++.|+++-+...+..+-.. .|.. ......|.+|.+++..+++.+|.+.|..++...|.+.
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSR-----YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 4556789999999998887654322 1211 1245678999999999999999999999999988654
No 43
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.44 E-value=17 Score=34.25 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... .........+.+-.+|+++|+++.+...++. ++-..- .-.......-.+.+
T Consensus 200 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 200 YEDAISHFQKAYSMAEAEK-------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE--SNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--hccchhHHHHHHHH
Confidence 5666677777776654331 1345556677788999999999999877644 331100 00112235667899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.+++..+++.+|.+++..|+..++...
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~ 298 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAG 298 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987644
No 44
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.43 E-value=2.1 Score=34.59 Aligned_cols=63 Identities=6% Similarity=-0.149 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-.+|++.|+++.+...++. +.-.|. -...+|++|.++...|++.+|.++|..|+...|.+
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALMDIN--------EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3456678999999999877754 333221 12456899999999999999999999999998854
No 45
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=88.11 E-value=1.8 Score=34.77 Aligned_cols=62 Identities=8% Similarity=-0.086 Sum_probs=48.6
Q ss_pred HHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 179 LFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.=..||+.|+++.+-..++ +++-.|. ....++..|..++..++|.+|.+++..|+..-|...
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPE--------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh
Confidence 3456899999999977764 4554321 246778999999999999999999999999877643
No 46
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=87.85 E-value=1.4 Score=40.53 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.+++....... ..++.....+.+-.+|++.|+++.+...+. +++-..... -.....+..+|..
T Consensus 131 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~-~~~~~~~~~~~nl 202 (293)
T 2qfc_A 131 YEYCILELKKLLNQQLTGI-------DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-DNEEFDVKVRYNH 202 (293)
T ss_dssp HHHHHHHHHHHHTTCCCSS-------CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC-ccccchHHHHHhH
Confidence 5677777777776543321 233466678889999999999999987764 442110000 0111123678899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
|.+++..++|.+|.+++..|+..++.
T Consensus 203 g~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 203 AKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998754
No 47
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=87.73 E-value=2 Score=36.19 Aligned_cols=88 Identities=14% Similarity=0.109 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++... | |+ ... ....+-.+|+++|+++-+-..++ ++.-.|- -...+|.+
T Consensus 52 ~~eA~~~~~~al~~---~--P~-----~~~---~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--------~~~~~~~l 110 (151)
T 3gyz_A 52 IEEAEVFFRFLCIY---D--FY-----NVD---YIMGLAAIYQIKEQFQQAADLYAVAFALGKN--------DYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHH---C--TT-----CHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--------CCHHHHHH
T ss_pred HHHHHHHHHHHHHh---C--CC-----CHH---HHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--------CcHHHHHH
Confidence 66777766665554 2 11 111 23345568899999999877664 4443321 12467899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccchH
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSSKK 250 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~ 250 (406)
|..++..|++.+|.++|..|+..+|....+
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~~~~~ 140 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSNDEKLK 140 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999876543
No 48
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=87.49 E-value=3.7 Score=34.96 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCC---cccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSE---NDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYK 217 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~---~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~ 217 (406)
.++|.....++...+-.+..... .+..+.-...+...+-.+|+++++++.+...+.. ++..| +....+
T Consensus 54 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~ 125 (198)
T 2fbn_A 54 INEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------NNVKAL 125 (198)
T ss_dssp HHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------ccHHHH
Confidence 67777777777765543321000 0001111234556777889999999999777654 34322 224677
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 218 YYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 218 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
|.+|..++..++|.+|.++|..|+...|..
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 999999999999999999999999988764
No 49
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=87.49 E-value=2.1 Score=31.82 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=47.9
Q ss_pred HHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhH-HhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 180 FKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQIT-YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vt-y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
-..|++.|+++-+...++.. +..| .. .. .++.+|.+++..++|.+|.++|..|+...|...
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p------~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP------VG--KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS------ST--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC------Cc--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 45688999999888777553 3222 11 34 678999999999999999999999999988765
No 50
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=87.39 E-value=4 Score=30.95 Aligned_cols=68 Identities=6% Similarity=-0.136 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
......+-..|+..++++.+...++..-... |. .....+..|.++...++|.+|.+.+..|+...|..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-----PA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----CC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC
Confidence 3444556678899999999988776543211 11 14567889999999999999999999999987654
No 51
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.36 E-value=4.6 Score=30.26 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.|+++.+...++..-... |.. ....+.+|.++...+++.+|.+.+..|+...|...
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 111 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 111 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----Ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 44566788999999999988876543221 111 34567899999999999999999999999877543
No 52
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.32 E-value=4.2 Score=31.63 Aligned_cols=83 Identities=10% Similarity=-0.028 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++....-++ ......+-.+|+++|+++-+...++. ++-.| . ....+|.+
T Consensus 20 ~~~A~~~~~~al~~~p~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~--~~~~~~~l 78 (126)
T 3upv_A 20 WPNAVKAYTEMIKRAPED-------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------N--FVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHCTTC-------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC-------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------C--cHHHHHHH
Confidence 566777666666542111 13455667789999999998776644 44322 1 14567899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
|.+++..++|.+|.+++..|+...|
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999984
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=87.03 E-value=20 Score=33.60 Aligned_cols=99 Identities=9% Similarity=0.081 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~Y 218 (406)
...++|...+.++...+.... ...........+-.+|++.|+++.+...+... +..+- .-........++
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~ 267 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLG-------DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE--FGDRAAERRANS 267 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh--cCCcHHHHHHHH
Confidence 346777777777766554321 13445566777889999999999998877543 32111 111223455778
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+|.+++..+++.+|.+++..|+..++..
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999988864
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=86.91 E-value=16 Score=32.37 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccC--CCCCCCCcchhhHHhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESS--QYKDKSSLSQQITYKYY 219 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~--~~~~~~~~~~~vty~YY 219 (406)
.++|...+.++...+..... ..........+.+-.+|++.|+++.+...++..-.. .... -........++.
T Consensus 127 ~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 200 (311)
T 3nf1_A 127 YKEAEPLCKRALEIREKVLG-----KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG-PDDPNVAKTKNN 200 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566666666655422100 012234556677888999999999998877543221 0000 012344667788
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
+|.++...+++.+|.+++..|+..++.
T Consensus 201 la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 201 LASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998775
No 55
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=86.70 E-value=13 Score=34.98 Aligned_cols=97 Identities=6% Similarity=-0.005 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... .........+.+-.+|++.|+++.+...++. ++-... ...| ....-.+.+
T Consensus 198 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~-~~~~--~~~~~~~~l 267 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQ-------NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE-KVPD--LLPKVLFGL 267 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HCGG--GHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-hCCh--hHHHHHHHH
Confidence 5666666666666653321 1235566777888999999999999877644 331100 0111 125667899
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.++...|++.+|.+++..|+..++...
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~ 295 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARS 295 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999988643
No 56
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=86.43 E-value=5.9 Score=35.70 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhcc-CC-CCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRAIES-SQ-YKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~i~~-~~-~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+.+-.+|++.|+++-+...++..-. .+ ..+..+........+.+|.++...+++.+|.+++..|+...|...
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 3456677889999999999887755432 21 122222234456778999999999999999999999999877654
No 57
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=86.37 E-value=6.7 Score=32.78 Aligned_cols=65 Identities=8% Similarity=0.152 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+-..|++.|+++-+...++..-...+ .-..+.+.+|..+...++|.+|.+++..|+...|.+.
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~~P-------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDF-------YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 3444678999999999888865433211 1246788999999999999999999999999988765
No 58
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=86.18 E-value=3.7 Score=30.55 Aligned_cols=64 Identities=6% Similarity=-0.145 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-..|+..|+++.+...+...-... |. -....+..|.+++..++|.+|.+.+..|+...|..
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-----PH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW 71 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-----CC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc
Confidence 445567889999999988776543211 11 14577889999999999999999999999987753
No 59
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.17 E-value=2.9 Score=33.39 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=49.2
Q ss_pred HHHHHHHhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 178 QLFKVYFRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+=..||+.|+++-+-..+ ++++-.| +-+.+++.+|.+++..++|.+|.+++..|+...|...
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p--------~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~ 76 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDP--------SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR 76 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc
Confidence 3445788999999987766 4455332 1256778899999999999999999999999887654
No 60
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=86.10 E-value=20 Score=32.82 Aligned_cols=128 Identities=13% Similarity=-0.027 Sum_probs=80.1
Q ss_pred cHHHHHHHHHHHHHhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccch
Q psy9768 171 GMLPFVNQLFKVYFRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSK 249 (406)
Q Consensus 171 g~~~l~n~l~kiYfkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~ 249 (406)
+.....+.+-.+|.+ |+++.+-..+ ++++-.+... ........++-+|.++...++|.+|.+++..|+..++....
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 344455667778888 9999886665 4444221110 11233566778899999999999999999999999886542
Q ss_pred -HHHHHHHHHHHHHHHhcCCCCCh-hhhchh---c-------hhhhHHHHHHHHhCCHHHHHHH
Q psy9768 250 -KNKRLILIYLVPVKMLLGFMPTR-ELLDKY---D-------LLQLWDVTVAVKGGQINQLSDA 301 (406)
Q Consensus 250 -~nk~~IL~yLIp~~lllG~~P~~-~ll~~~---~-------l~~y~~l~~aik~Gnl~~f~~~ 301 (406)
......+.-+.-+.+.+|..... ..+++. + ......+..++..||...|.++
T Consensus 191 ~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~~~~d~~~~~~~ 254 (307)
T 2ifu_A 191 YPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 22333444445555555664322 112221 0 0124577888999999999883
No 61
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=85.80 E-value=9.2 Score=30.54 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.|+++.+...++.. +..| . .....+..|.++...++|.+|.+++..|+...|...
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~ 115 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELDK------K--YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDK 115 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------c--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 3445667889999999998777543 3322 1 135678899999999999999999999999887643
No 62
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.73 E-value=2.5 Score=33.38 Aligned_cols=66 Identities=9% Similarity=-0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.....+-.+|++.++++.+...+.. ++..| . ....+|..|.++...+++.+|.++|..|+...|..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDG------G--DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCc------c--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445566789999999988777654 33221 1 14667899999999999999999999999988764
No 63
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=85.68 E-value=0.97 Score=39.46 Aligned_cols=72 Identities=11% Similarity=-0.046 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
....+-.+|.++|+++.+...++..-...+.+.......+..++..|.+++..++|.+|.+++..|+...|.
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 445567789999999999887755432211111112334577899999999999999999999999998776
No 64
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=85.65 E-value=4.7 Score=29.97 Aligned_cols=86 Identities=3% Similarity=-0.083 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.+.+.++.... ++ + ......+-.+|++.++++.+...++.. +..| . .....+..
T Consensus 20 ~~~A~~~~~~~~~~~-----~~---~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~--~~~~~~~~ 78 (118)
T 1elw_A 20 IDDALQCYSEAIKLD-----PH---N-----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------D--WGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHHC-----TT---C-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------T--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-----CC---c-----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc------c--cHHHHHHH
Confidence 566666666665541 11 0 224455667889999999998877553 3222 1 23567889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.++...+++.+|.+++..|+...|...
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 9999999999999999999999877543
No 65
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=85.58 E-value=4.6 Score=31.17 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=49.0
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+-..|++.|+++.+...++.+-...+.+ .......|..|..++..++|.+|.+.+..++...|.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNG----VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSS----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCC----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 3457889999999988876654321111 1123567899999999999999999999999987765
No 66
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=85.49 E-value=2.3 Score=31.49 Aligned_cols=61 Identities=8% Similarity=0.042 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.+-.+|++.|+++.+...++.. +..+ . .....+..|.+++..++|.+|.+++..|+...|.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDP------E--ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCC------C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc------C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 3455688999999988877553 3222 1 1345688999999999999999999999998776
No 67
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=85.28 E-value=3.9 Score=31.94 Aligned_cols=63 Identities=11% Similarity=-0.126 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-..|++.|+++.+...++. ++..|. ....++.+|.+++..++|.+|.+++..|+...|..
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPL--------VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcC--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 4455678899999999887755 333221 24678899999999999999999999999987754
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=85.27 E-value=8.8 Score=30.92 Aligned_cols=65 Identities=14% Similarity=0.224 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-.+|++.|+++.+...++.+-... |. .....+..|.++...+++.+|.+.+..|+...|..
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 143 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEAN-----PI--NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE 143 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cH--hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc
Confidence 4556678899999999988876543321 11 13566889999999999999999999999987654
No 69
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=85.17 E-value=4.9 Score=33.02 Aligned_cols=65 Identities=9% Similarity=-0.116 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-.+|++.++++-+...++. ++..|. ...+++.+|.+++..++|.+|.+++..|+...|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA--------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 344556778999999999887754 443221 25678999999999999999999999999987754
No 70
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=84.94 E-value=7.9 Score=29.26 Aligned_cols=64 Identities=11% Similarity=0.076 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-..|++.|+++.+...+...-... |. .....+.+|.+++..++|.+|.+++..|+...|..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 71 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-----PT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN 71 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence 445668899999999988775543221 11 14567889999999999999999999999988754
No 71
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.81 E-value=5.4 Score=36.59 Aligned_cols=100 Identities=8% Similarity=-0.117 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|.....++....-.+. .........+.+-.+|.++|+++-+-..++..-...+......-....+++-.|
T Consensus 134 ~~~A~~~~~~Al~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQ-------SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 4566666666665543321 122334456677889999999999988775543321111111111223567789
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.++...+++.+|.+++..|+...|...
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999998777543
No 72
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=84.79 E-value=4.6 Score=32.47 Aligned_cols=64 Identities=11% Similarity=-0.014 Sum_probs=49.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+-..|++.|+++-+...++..-...+ .-..+.+.+|.++...++|.+|.+++..|+...|.+.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDH-------YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCC-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 345678899999999888765432211 1246778999999999999999999999999887654
No 73
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.55 E-value=7.5 Score=37.04 Aligned_cols=98 Identities=8% Similarity=0.047 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.+++.....++...+.... +......+...+.++|+..|++.-+..++..+-.. ....-++.+.+.+....|
T Consensus 111 ~~~a~~~~~~~~~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 182 (434)
T 4b4t_Q 111 LDDQIFVCEKSIEFAKREK-------RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE-FKKLDDKPSLVDVHLLES 182 (434)
T ss_dssp HHHHHHHHHHHHHHHHHSS-------CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSSCSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-------ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH-HHhcccchhHHHHHHHHH
Confidence 5666666666666655432 23345667788899999999999998888765322 011224567889999999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+++...++|.+|...++.|....+..
T Consensus 183 ~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 183 KVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999876543
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=84.54 E-value=21 Score=31.61 Aligned_cols=120 Identities=9% Similarity=0.014 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++...+.... ...........+-.+|+..|+++.+...+.. ++-.+- .-.........+.+
T Consensus 59 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~l 129 (338)
T 3ro2_A 59 YAKALEYHHHDLTLARTIG-------DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRE--LNDKVGEARALYNL 129 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccc-------ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHH
Confidence 4555566666555543321 1223445566778899999999999877654 332111 11123345677899
Q ss_pred hhhhhhhcc--------------------HHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhcCCCC
Q psy9768 221 GRKAMFDSD--------------------YKTANEYLTFAFQRCHKSS-KKNKRLILIYLVPVKMLLGFMP 270 (406)
Q Consensus 221 Gr~~~~~~~--------------------~~~A~~~L~~A~~~c~~~~-~~nk~~IL~yLIp~~lllG~~P 270 (406)
|.++...++ |.+|.+++..|+..++... ....-.++..+.-+.+..|.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 200 (338)
T 3ro2_A 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 200 (338)
T ss_dssp HHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999 9999999999998776543 2333345555555555566654
No 75
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=84.44 E-value=4 Score=34.70 Aligned_cols=83 Identities=12% Similarity=0.010 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCC--------CCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKD--------KSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~--------~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
....+-.+|+++|+++.+...++.. +..|-.. ..-.......+|.+|..+...+++.+|.+++..|+...|
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 3456677899999999998777553 4322111 001123356779999999999999999999999999998
Q ss_pred ccchHHHHHHHH
Q psy9768 246 KSSKKNKRLILI 257 (406)
Q Consensus 246 ~~~~~nk~~IL~ 257 (406)
..........+.
T Consensus 153 ~~~~~~~~~a~~ 164 (213)
T 1hh8_A 153 EPRHSKIDKAME 164 (213)
T ss_dssp SGGGGHHHHHHH
T ss_pred ccccchHHHHHH
Confidence 765444444333
No 76
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=83.88 E-value=5.2 Score=32.86 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+-..|++.|+++-+...++.. ...|. -..+.+.+|.++...++|.+|.+++..|+...|...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 89 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHY--------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP 89 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcc--------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 344566789999999998887654 32221 146678999999999999999999999999877654
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=83.58 E-value=12 Score=32.74 Aligned_cols=139 Identities=12% Similarity=0.057 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++... + ++ .... ...+-.+|++.|+++.+...+...-..+... .-...-++.+|
T Consensus 19 ~~~A~~~~~~~l~~---~--p~----~~~~----~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~lg 81 (272)
T 3u4t_A 19 YAEAIEVFNKLEAK---K--YN----SPYI----YNRRAVCYYELAKYDLAQKDIETYFSKVNAT----KAKSADFEYYG 81 (272)
T ss_dssp HHHHHHHHHHHHHT---T--CC----CSTT----HHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT----TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---C--CC----cHHH----HHHHHHHHHHHhhHHHHHHHHHHHHhccCch----hHHHHHHHHHH
Confidence 66777766666543 1 11 0112 2333448999999999988776543332111 11233468999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCCh-hhhchh----c--hhhhHHHH-HHHHhC
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTR-ELLDKY----D--LLQLWDVT-VAVKGG 293 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~-~ll~~~----~--l~~y~~l~-~aik~G 293 (406)
.++...++|.+|.+++..|+...|.... ++..+--+-..+|++... +.+++- + ...+..+. .+...|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLD-----MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTH-----HHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHH-----HHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886553 233333333445654322 222211 1 12356676 777777
Q ss_pred CHHHHHHHHHHh
Q psy9768 294 QINQLSDAMTKH 305 (406)
Q Consensus 294 nl~~f~~~l~~~ 305 (406)
.++++++..
T Consensus 157 ---~~~~A~~~~ 165 (272)
T 3u4t_A 157 ---EYVKADSSF 165 (272)
T ss_dssp ---CHHHHHHHH
T ss_pred ---HHHHHHHHH
Confidence 445555443
No 78
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=83.46 E-value=3.2 Score=31.52 Aligned_cols=64 Identities=17% Similarity=0.148 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
...+-.+|++.|+++.+...+...-... |.. ....+..|.++...+++.+|.+++..++...|.
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC--hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 3456788999999999988876543321 111 234577899999999999999999999987664
No 79
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=83.36 E-value=4.9 Score=32.01 Aligned_cols=91 Identities=15% Similarity=0.197 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHH-HHhccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLI-RAIESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~-~~i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.....++... | |+ . ....+.+-.+|+++|+++.|-..+ ++++-.|-. .........-++-+
T Consensus 24 ~~~A~~~y~~Al~~---~--p~-----~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 24 FEKAHVHYDKAIEL---D--PS-----N---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET-RADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHHHH---C--TT-----C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---C--CC-----C---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHH
Confidence 67777777766654 2 11 0 123455667899999999986655 455432211 01112234456779
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
|..+.-.++|.+|.+++..|+...|.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99999999999999999999997664
No 80
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=83.04 E-value=6.2 Score=31.60 Aligned_cols=66 Identities=15% Similarity=-0.005 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.....+-..|++.|+++.+...+.. ++..| . .....+..|.++...++|.+|.+.+..|+...|..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~------~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP------S--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 3445566778999999999887755 33222 1 14567889999999999999999999999987754
No 81
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=82.90 E-value=13 Score=27.87 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-.+|++.|+++.+...++...... |.. ....+..|.++...+++.+|.+.+..++...|..
T Consensus 38 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 102 (136)
T 2fo7_A 38 WYNLGNAYYKQGDYDEAIEYYQKALELD-----PRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 3456778899999999988876543221 111 3456778999999999999999999999876643
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=82.88 E-value=9.1 Score=33.20 Aligned_cols=68 Identities=7% Similarity=0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+..+|++.|+++.+...+...-..+ .. .......+.+|.+++..+++.+|.+++..|+...|..
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDT---LY--PERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ 174 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCT---TC--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCc---cC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccc
Confidence 44566788999999999988886654311 11 1234567889999999999999999999999987754
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=82.60 E-value=12 Score=34.94 Aligned_cols=123 Identities=8% Similarity=-0.042 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.+++.+.+.++........ ...+.....+.+-.+|+..|+++-+...+... +..+-.............+.+
T Consensus 69 ~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 69 LTRSLALMQQTEQMARQHD-------VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 4555555555555443321 13355566677888999999999887776543 221100000012334556779
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCC
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPT 271 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~ 271 (406)
|.++...|++.+|.+++..|+..++.......-..+..+.-+.+..|+...
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 192 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDN 192 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999875543323344455555555676543
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=82.47 E-value=9.8 Score=31.92 Aligned_cols=68 Identities=7% Similarity=-0.050 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhc-CChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRI-SKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl-~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-.+|++. |+++.+...++.+-..+ ..| ......+..|.++...+++.+|.+++..|+...|..
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 146 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADP---TYP--TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF 146 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTST---TCS--CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCc---CCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 345567789999 99999988886654321 111 234566889999999999999999999999987754
No 85
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=82.43 E-value=2.5 Score=31.34 Aligned_cols=88 Identities=5% Similarity=-0.095 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++.... ++ .. .....+-.+|++.|+++.+...++..-... |........+.+|
T Consensus 22 ~~~A~~~~~~a~~~~-----~~-----~~---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~l~ 83 (112)
T 2kck_A 22 YTESIDLFEKAIQLD-----PE-----ES---KYWLMKGKALYNLERYEEAVDCYNYVINVI-----EDEYNKDVWAAKA 83 (112)
T ss_dssp HHHHHHHHHHHHHHC-----CC-----CH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-----cC-----CH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cccchHHHHHHHH
Confidence 566666666665541 11 01 123456678999999999988775543221 1111245678999
Q ss_pred hhhhhh-ccHHHHHHHHHHHHHHhccc
Q psy9768 222 RKAMFD-SDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 222 r~~~~~-~~~~~A~~~L~~A~~~c~~~ 247 (406)
.++... +++.+|.+++..+....|.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999 99999999999999988754
No 86
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=82.37 E-value=6.6 Score=35.80 Aligned_cols=99 Identities=10% Similarity=-0.088 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.....++...+..... . ......+.+.+-.+|+++|+++-|...+.. ++-.+..+ ........+|..
T Consensus 171 ~~~A~~~~~kal~~~~~~~~-----~-~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~--~~~~~~~~~~~l 242 (293)
T 2qfc_A 171 LKKGIDLFEQILKQLEALHD-----N-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMALIGQLYYQR 242 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCc-----c-ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 55666666666655433211 1 111225667888899999999999877643 33221111 112345677999
Q ss_pred hhhhhhhccHHHH-HHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTA-NEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A-~~~L~~A~~~c~~~~ 248 (406)
|.++...+++.+| .+++..|+..+....
T Consensus 243 g~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 243 GECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999 889999998766543
No 87
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=82.13 E-value=6.1 Score=30.63 Aligned_cols=62 Identities=11% Similarity=-0.123 Sum_probs=48.1
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+-..|++.|+++-+...++. ++..|. -...++..|..++..++|.+|.+++..|+...|..
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 344578899999998777754 443221 14678899999999999999999999999987754
No 88
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=82.09 E-value=10 Score=35.78 Aligned_cols=99 Identities=8% Similarity=-0.020 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccc--chhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDS--KKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~s--Kk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~Y 218 (406)
.++|.....++....-.+...+.+.. .+.......+.+-.+|+++|+++-|...++. ++-.| +.+..+|
T Consensus 163 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~ 234 (336)
T 1p5q_A 163 YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--------NNEKGLS 234 (336)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHH
Confidence 56667777776665433211000000 1111234556777899999999999777644 44322 1246679
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+|..++..++|.+|.++|..|+...|...
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 264 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNK 264 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence 999999999999999999999999988643
No 89
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=82.09 E-value=4.4 Score=32.02 Aligned_cols=61 Identities=11% Similarity=-0.086 Sum_probs=47.6
Q ss_pred HHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 180 FKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
-..|++.|+++-+...++.. +..| . -...+|.+|.++...+++.+|.++|..|+...|...
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~P------~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 85 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKEP------E--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI 85 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 45678899999988877553 3322 1 145678999999999999999999999999887643
No 90
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=81.69 E-value=2.8 Score=34.90 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-.+|+++|+++.+-..++. ++..| +....++.+|.++...|++.+|.+++..|++.-|.+
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISIKP--------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhcc--------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 34456778999999988777654 34322 113567889999999999999999999999876653
No 91
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=81.59 E-value=5.7 Score=32.13 Aligned_cols=66 Identities=6% Similarity=0.059 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-..|++.|+++.+...++.+-.. .|. .....+..|..++..+++.+|.+.+..++...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 75 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-----DAF--DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN 75 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCT-----TSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----Ccc--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3345667788999999888887654322 222 24567889999999999999999999999987754
No 92
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=81.35 E-value=10 Score=32.92 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.....+-.+|++.|+++.+...++..-... |. .....+.+|.+++..+++.+|.+.+..++...|..
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 208 (252)
T 2ho1_A 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLN-----RN--QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 344566778999999999988876543221 11 14566899999999999999999999999877643
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=81.21 E-value=12 Score=30.74 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHH-HHhcCCh--hhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 178 QLFKV-YFRISKL--HLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 178 ~l~ki-Yfkl~~~--~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+-.+ |++.|++ +.+...+.. ++..| . ....++.+|.+++..++|.+|.+++..|+...|.+.
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~p------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALDS------N--EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHCT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhCC------C--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 34455 8889998 877776654 33322 1 135678899999999999999999999999988753
No 94
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.01 E-value=11 Score=29.40 Aligned_cols=70 Identities=9% Similarity=-0.042 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCc-chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSL-SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~-~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
......+-..|++.++++.+...++..-.. .|. .+.....+.+|..++..++|.+|.+.+..|+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC
Confidence 344556677899999999998887654332 121 2246778899999999999999999999999986654
No 95
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=80.93 E-value=8.2 Score=28.78 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-.+|++.|+++.+...+...-... | +.....+..|..+...+++.+|...+..++...|..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 76 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-----P--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----c--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence 3455677899999999988876543221 1 113466788999999999999999999999876653
No 96
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=80.86 E-value=4.2 Score=31.48 Aligned_cols=74 Identities=11% Similarity=0.036 Sum_probs=51.7
Q ss_pred HHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc--hHHHH
Q psy9768 179 LFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS--KKNKR 253 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~nk~ 253 (406)
+=+.|++.+++..|..-++. ++..+. +..+.......++++|..++-.|++.+|..++..|++.-|.+. ..|++
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~-~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhc-cCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 44678899999988776644 332111 1112234456679999999999999999999999999888653 34444
No 97
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=80.66 E-value=9.3 Score=35.44 Aligned_cols=89 Identities=11% Similarity=-0.019 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~Y 218 (406)
...++|...+.++....-.. .. ....+.+-.+|.+.|+++-+...++.. +..| . .....+
T Consensus 191 g~~~~A~~~~~~al~~~p~~--------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~--~~~~~~ 251 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQNGDM--------ID---PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP------E--DYSLWN 251 (365)
T ss_dssp HHHHHHHHHHHHHHHHSCSS--------CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------T--CHHHHH
T ss_pred hhHHHHHHHHHHHHHhCcCc--------cC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------C--CHHHHH
Confidence 56778888777777762110 00 113345667888889998888777553 3222 1 134567
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+|.++...+++.+|.+++..|+...|..
T Consensus 252 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 252 RLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 88888888889999999999988887764
No 98
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=80.40 E-value=15 Score=31.98 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~Y 218 (406)
...++|...+.++...... ...........+-.+|++.|+++.+...++. ++..| . ....++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~--~~~~~~ 81 (275)
T 1xnf_A 19 LQQEVILARMEQILASRAL---------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------D--MPEVFN 81 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------C--CHHHHH
T ss_pred chHHHHHHHHHHHHhcccc---------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------C--cHHHHH
Confidence 4567777776666553110 1122334455667788899999988777654 33222 1 134567
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+|.+++..++|.+|.+++..|+...|...
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCcccc
Confidence 788888888999999999999988877654
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=80.35 E-value=6.2 Score=34.15 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=51.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+.+-.+|++.|+++-+...++. ++-.| . -+..++.+|.+++..|++.+|.+++..|+..-|...
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAP------N--NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 34567789999999999877754 44322 1 246778999999999999999999999999988654
No 100
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=80.20 E-value=7.5 Score=33.32 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-.+|++.|+++.+...++..-... | +.....+.+|.+++..+++.+|.+.+..|+...|..
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 192 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELN-----E--NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC-----T--TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-----C--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 4456677888888888877775533211 1 113456788888888889999998888888876643
No 101
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=80.16 E-value=7.4 Score=32.72 Aligned_cols=66 Identities=15% Similarity=-0.019 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-..|++.|+++.+...++..-... |. .....+..|.++...+++.+|.+++..|+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 75 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-----PK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS 75 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----cc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 33455667788888888877765433211 11 13456778888888888888888888888877654
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=79.91 E-value=29 Score=29.99 Aligned_cols=64 Identities=5% Similarity=-0.029 Sum_probs=42.2
Q ss_pred hcCChhhHHHHHHHhccCCCCCCC-Cc---------chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 185 RISKLHLMKPLIRAIESSQYKDKS-SL---------SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 185 kl~~~~l~~~~~~~i~~~~~~~~~-~~---------~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..|+++-+...++.+-...+.+.. +. .....+.+..|.+++-.++|.+|.+.++.++...|.+.
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 456777776666554432111111 10 11123447899999999999999999999999998753
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=79.85 E-value=31 Score=30.29 Aligned_cols=146 Identities=8% Similarity=0.034 Sum_probs=83.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCcchhH
Q psy9768 63 HLKCVQSIQANNFNEAYLSQSTIVQGFIKMFQQCKEDNWLLPVVQTVSLNLRLVSNKVDNKALASSIQDGNSGAKPRDAL 142 (406)
Q Consensus 63 ~lk~~~~i~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~W~lp~l~~~~~~L~~~a~~~D~~~~~~~~~~~~~~~~~~~~l 142 (406)
|.+....+..+++.+|-..+.+++.. ..+..|....++.++..+.. . ...
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~a~~~lg~~~~~-----------------~------~~~ 68 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTY-------GRTHEWAADAQFYLARAYYQ-----------------N------KEY 68 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGG-------CSCSTTHHHHHHHHHHHHHH-----------------T------TCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHH-----------------h------CcH
Confidence 44445555678888888776666532 22334444444433332111 1 125
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHh--------cCChhhHHHHHHHhccC-CCCCCCCc---
Q psy9768 143 ETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFR--------ISKLHLMKPLIRAIESS-QYKDKSSL--- 210 (406)
Q Consensus 143 e~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfk--------l~~~~l~~~~~~~i~~~-~~~~~~~~--- 210 (406)
++|...+.+..+..-++ ...-.+ ...+-.+|++ .|+++-+...++.+-.. |-......
T Consensus 69 ~~A~~~~~~~l~~~p~~------~~~~~a----~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 69 LLAASEYERFIQIYQID------PRVPQA----EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp HHHHHHHHHHHHHCTTC------TTHHHH----HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC------chhHHH----HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH
Confidence 66666666665542111 111122 2334556788 89999988877654332 21111100
Q ss_pred ------chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 211 ------SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 211 ------~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+...-.|..|.+++..++|.+|...+..++...|.+.
T Consensus 139 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 139 KIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 01111238999999999999999999999999988643
No 104
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=79.65 E-value=17 Score=33.30 Aligned_cols=62 Identities=8% Similarity=-0.110 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
+.+-.+|++.|+++-+...++.. +..|. ....++.+|.++...+++.+|.+.+..|+...|.
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN--------DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34445555556655555544332 21110 0223445555555555555555555555555443
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=79.52 E-value=3.7 Score=36.56 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=50.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcc-hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLS-QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~-~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+-..|++.|+++-+...++.+-.. .|.+ .....+|++|..++..++|.+|.+.|..++...|.+
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID 85 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC
Confidence 345678999999999988765442 1222 225678999999999999999999999999998865
No 106
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=79.17 E-value=14 Score=31.74 Aligned_cols=100 Identities=12% Similarity=0.063 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhcc-CCCCCC-------------
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIES-SQYKDK------------- 207 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~-~~~~~~------------- 207 (406)
.++|...+.++....-.+. ............+-.+|.+.|+++.+...++..-. .+..+.
T Consensus 54 ~~~A~~~~~~a~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 54 YETAISTLNDAVEQGREMR------ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccc------cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 5666666666666543321 11223345566777889999999988777654332 111000
Q ss_pred -----CCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 208 -----SSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 208 -----~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+.....+..|.+++..++|.+|.+++..|+...|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 0112345667889999999999999999999999987764
No 107
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=79.14 E-value=19 Score=30.67 Aligned_cols=66 Identities=15% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-.+|.+.|+++.+...++..-... |.. ....+..|.+++..+++.+|.+.+..|+...|..
T Consensus 93 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAG-----MEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----CCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCC--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 44566788999999999988776543221 111 2456788999999999999999999999987754
No 108
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=78.98 E-value=12 Score=32.66 Aligned_cols=71 Identities=14% Similarity=0.004 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCC---hhhHHHHHHH-hccCC-CCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISK---LHLMKPLIRA-IESSQ-YKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~---~~l~~~~~~~-i~~~~-~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+-.+|+.+++ ++.+...+.. ++... ..+. .....+..++++|.++...+++.+|.+++..|+...|.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK-YKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHH
Confidence 345677788887 6656554433 33210 0110 1344567889999999999999999999999999988754
No 109
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=78.79 E-value=2.4 Score=35.35 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=30.2
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|..+-++-+|..+...|+|.+|.+++..|++..|...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~ 39 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV 39 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 4456677889999999999999999999999877654
No 110
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=77.80 E-value=13 Score=31.42 Aligned_cols=75 Identities=7% Similarity=-0.002 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcc--------hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLS--------QQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~--------~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
......+-..|++.++++.+...++. ++-.+....++.. -.+..++.+|.+++..++|.+|.+++..|+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 33344556678999999999877754 4432211111110 12467788999999999999999999999998
Q ss_pred hccc
Q psy9768 244 CHKS 247 (406)
Q Consensus 244 c~~~ 247 (406)
.|..
T Consensus 118 ~p~~ 121 (198)
T 2fbn_A 118 DKNN 121 (198)
T ss_dssp STTC
T ss_pred Cccc
Confidence 7654
No 111
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=77.53 E-value=8.5 Score=33.13 Aligned_cols=67 Identities=9% Similarity=-0.164 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 174 PFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 174 ~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.....+-.+|++.|+++.+...++..-... |. .....+.+|.++...++|.+|.+++..|+...|..
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-----PE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----cc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 345567788999999999988876543221 11 13567889999999999999999999999987654
No 112
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=77.05 E-value=3.8 Score=31.71 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=37.4
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhcCC
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS--KKNKRLILIYLVPVKMLLGF 268 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~--~~nk~~IL~yLIp~~lllG~ 268 (406)
=.|-+|+.++.+++|..|..+|..|++..+... ...+..|+.+|.-+-.-+|.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~ 61 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD 61 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC
Confidence 358899999999999999999999999765432 12344555555544444443
No 113
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=77.02 E-value=4.8 Score=34.81 Aligned_cols=63 Identities=13% Similarity=0.084 Sum_probs=47.3
Q ss_pred HHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..-..|++.|+++.+...+.. ++..|.. + ....|+.|..+...++|.+|.+++..|+...|..
T Consensus 12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~------~-~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQ------D-SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTC------C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhccCCC------C-cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch
Confidence 345678899999999888764 4433211 1 1455669999999999999999999999987764
No 114
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=77.00 E-value=13 Score=33.27 Aligned_cols=88 Identities=8% Similarity=-0.005 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYY 219 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY 219 (406)
...++|.+.+.++....-. .......+-.+|.+.|+++-+...++..-... | +.....+.
T Consensus 152 ~~~~~A~~~~~~~~~~~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~ 211 (327)
T 3cv0_A 152 NEYRECRTLLHAALEMNPN-------------DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-----P--DDAQLWNK 211 (327)
T ss_dssp HHHHHHHHHHHHHHHHSTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T--TCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCC-------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C--CcHHHHHH
Confidence 3456777777766654211 12345566778999999999988876543221 1 11356788
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.|.++...+++.+|.+.+..|+...|..
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 239 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALDINPGY 239 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999987754
No 115
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=75.87 E-value=10 Score=36.63 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+.+.+-.+|+++++++.|...++. ++..| +....+|.+|..+...++|.+|.++|..|++..|...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 345566777889999999999777644 44322 2356679999999999999999999999999988643
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=75.17 E-value=13 Score=36.89 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCccc--chhcHHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDS--KKWGMLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~s--Kk~g~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~Y 218 (406)
.++|.....++....-.+.....+.. .........+.+-.+|+++++++.|...++ +++-.| +.+..+|
T Consensus 284 ~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~ 355 (457)
T 1kt0_A 284 YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS--------ANEKGLY 355 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------ccHHHHH
Confidence 56677777766665433211000000 111124455677788999999999877664 444322 1256789
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..|..++..++|.+|.++|..|+...|...
T Consensus 356 ~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 356 RRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999887543
No 117
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=74.37 E-value=8.2 Score=35.33 Aligned_cols=86 Identities=9% Similarity=0.121 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++... + ++ -..+...+-.+|+++|+++-+...++..-.. .| +-...+|.+|
T Consensus 20 ~~~A~~~~~~al~~---~--p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p--~~~~~~~~lg 79 (281)
T 2c2l_A 20 YPEAAACYGRAITR---N--PL--------VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DG--QSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHH---C--SC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---C--Cc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CC--CCHHHHHHHH
Confidence 56666666665554 1 11 1234456677899999999998877554322 11 1246678999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+...++|.+|.+.|..|+...|.+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999998865
No 118
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=74.36 E-value=24 Score=32.29 Aligned_cols=57 Identities=16% Similarity=0.062 Sum_probs=36.1
Q ss_pred hcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 185 RISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 185 kl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+.|+++.+...+... +..|.. ......+.+|.++...++|.+|.+++..|+...|..
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 250 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTS------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTS------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hcccHHHHHHHHHHHHHhCcCc------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 666777666665443 222211 023455677888888888888888888888776654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=74.23 E-value=7.4 Score=32.97 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.|+++-+...++. ++..| .....++..|.+++..++|.+|.+++..|+..+|...
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINRDK--------HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 556677789999999999877754 33321 1245678899999999999999999999999888644
No 120
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=74.15 E-value=20 Score=35.50 Aligned_cols=94 Identities=9% Similarity=-0.000 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCC----hhhHHHHHHH-hccCCCCCCCCcchhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISK----LHLMKPLIRA-IESSQYKDKSSLSQQI 214 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~----~~l~~~~~~~-i~~~~~~~~~~~~~~v 214 (406)
...++|...+.++....-. --...+.++..+++.||..++ ++.+...++. ++-.|. ..+..
T Consensus 193 g~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~ 258 (474)
T 4abn_A 193 RHVMDSVRQAKLAVQMDVL---------DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNP 258 (474)
T ss_dssp HHHHHHHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCH
T ss_pred hhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCH
Confidence 4466777777776664211 123566677777777777765 6666555543 332210 12345
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..++.+|.++...++|.+|.++|..|+..-|..
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 778999999999999999999999999987754
No 121
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=73.83 E-value=3.7 Score=33.72 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=31.7
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+.....|.+|++++-.++|.+|.++|..|+..-|...
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~ 65 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP 65 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3344568999999999999999999999999988654
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=73.57 E-value=13 Score=34.17 Aligned_cols=97 Identities=7% Similarity=0.058 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.....++......+. .........+.+-.+|.++|+++-+-..+.. ++..+-... ......+.+-.
T Consensus 131 ~~~A~~~~~~Al~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~ 201 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFENEE-------RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQ 201 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC-------ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHH
Confidence 5666666666666554331 2334455667788899999999998777644 332211111 12234466677
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.+++..+++.+|.+++..|+ ..|...
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 888888899999999999999 777543
No 123
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=73.54 E-value=9.5 Score=38.02 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccC-CCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESS-QYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~-~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+.+..+|.+.|+++-+..+++.+... +-...-| ...+...+.+|..+...|++.+|.+.+..|+...|.+.
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE-KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS-GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch-hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 4567788899999999998888665322 1000111 12256678899999999999999999999999877543
No 124
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=73.51 E-value=17 Score=36.19 Aligned_cols=94 Identities=5% Similarity=-0.060 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|.+.+.++....-.... .........+.+..+|.+.|+++.+...++.+-... | +-...++.+|
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~------~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p--~~~~~~~~l~ 557 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQS------NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----T--NDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCC------CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----S--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccc------chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----C--CChHHHHHHH
Confidence 56666666666655322110 011123466778899999999999999886643321 1 1235678999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.++...|++.+|.+.+..|++..|.+.
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999999988754
No 125
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=73.14 E-value=5.6 Score=38.07 Aligned_cols=96 Identities=8% Similarity=-0.025 Sum_probs=66.8
Q ss_pred hcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhc--cHHHHHHHHHHHHHHhccc
Q psy9768 170 WGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDS--DYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 170 ~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~--~~~~A~~~L~~A~~~c~~~ 247 (406)
.+-+-...+...+|.++|++++++..++.+...+. +.....+.+....-.|-+.+..| ++++|...|+++...+|.
T Consensus 133 ~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~-d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~- 210 (310)
T 3mv2_B 133 EGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE-DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT- 210 (310)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-
T ss_pred cCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-
Confidence 36677778889999999999999999998765321 00001234455555677788877 999999999999888875
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCh
Q psy9768 248 SKKNKRLILIYLVPVKMLLGFMPTR 272 (406)
Q Consensus 248 ~~~nk~~IL~yLIp~~lllG~~P~~ 272 (406)
.+.-..++. +.|.+|++|..
T Consensus 211 -~~~~~lLln----~~~~~g~~~eA 230 (310)
T 3mv2_B 211 -WKTQLGLLN----LHLQQRNIAEA 230 (310)
T ss_dssp -HHHHHHHHH----HHHHHTCHHHH
T ss_pred -cccHHHHHH----HHHHcCCHHHH
Confidence 111122222 67777888764
No 126
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=72.82 E-value=53 Score=29.41 Aligned_cols=91 Identities=7% Similarity=-0.020 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++.... ++ ...........+-.+|++.|+++-+...+...-... | +.....+..|
T Consensus 250 ~~~A~~~~~~~~~~~-----~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~--~~~~~~~~~~ 313 (359)
T 3ieg_A 250 YTDATSKYESVMKTE-----PS----VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-----P--DNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHHHHC-----CS----SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----T--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----CC----chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----c--ccHHHHHHHH
Confidence 566666666665542 11 122233345567789999999999988876543321 1 1145778999
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.++...|++.+|.+++..|++..|.+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 999999999999999999999887644
No 127
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=72.63 E-value=11 Score=33.91 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++....-..... ..... .......+-.+|.+.|+++-+...++..-... | +....++.+|
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~--~~~~~~~~la 277 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNE--VTVDK--WEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-----P--QNASTYSAIG 277 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCS--CTTTT--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T--TCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccc--ccccH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-----c--cchHHHHHHH
Confidence 566666676666654322111 00011 12244466778999999999988876543221 1 1235678899
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.++...+++.+|.+++..|+...|...
T Consensus 278 ~~~~~~g~~~~A~~~~~~al~~~p~~~ 304 (330)
T 3hym_B 278 YIHSLMGNFENAVDYFHTALGLRRDDT 304 (330)
T ss_dssp HHHHHHTCHHHHHHHHHTTTTTCSCCH
T ss_pred HHHHHhccHHHHHHHHHHHHccCCCch
Confidence 999999999999999999999887654
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=72.42 E-value=45 Score=30.00 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCc-chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchH-
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSL-SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKK- 250 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~-~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~- 250 (406)
.......+..+++.++++.+..++..+..... ..|. .+...|.+..|.++...++|.+|.+++..|+...+.....
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc--CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 33344567889999999999998877654321 1122 2335566668999999999999999999999965543322
Q ss_pred HHHHHHHHHHHHHHhcCCCC
Q psy9768 251 NKRLILIYLVPVKMLLGFMP 270 (406)
Q Consensus 251 nk~~IL~yLIp~~lllG~~P 270 (406)
..-.++..+--+-.-+|.+.
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~ 172 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLK 172 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHH
Confidence 12223444444444455543
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=72.00 E-value=6.8 Score=29.57 Aligned_cols=35 Identities=6% Similarity=-0.024 Sum_probs=31.2
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+|.+|..++..++|.+|.++|..|++..|...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 41 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV 41 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 45678999999999999999999999999887654
No 130
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=71.66 E-value=20 Score=30.96 Aligned_cols=65 Identities=12% Similarity=0.035 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+-..|++.|+++-+...++..-... | +....++.+|.++...|++.+|.+.+..|+...|...
T Consensus 9 ~~lg~~~~~~g~~~~A~~~~~~al~~~-----p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 9 LRLGVQLYALGRYDAALTLFERALKEN-----P--QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-----S--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 345567889999999988876543221 1 1245678999999999999999999999999988754
No 131
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=71.64 E-value=29 Score=30.81 Aligned_cols=84 Identities=11% Similarity=-0.026 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++....-. .......+-.+|++.|+++.+...++.. +..| . .....+.+
T Consensus 188 ~~~A~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~--~~~~~~~l 246 (327)
T 3cv0_A 188 YDSAAANLRRAVELRPD-------------DAQLWNKLGATLANGNRPQEALDAYNRALDINP------G--YVRVMYNM 246 (327)
T ss_dssp HHHHHHHHHHHHHHCTT-------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------C--CHHHHHHH
Confidence 56666666666554211 0234566778899999999998887654 3222 1 13456889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
|.+++..+++.+|.+++..|+...|.
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999998776
No 132
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=71.32 E-value=7.1 Score=27.84 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=30.7
Q ss_pred hhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 213 QITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 213 ~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.....+.+|..++..++|.+|.+++..|+...|..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 42 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 42 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 35677889999999999999999999999987754
No 133
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=71.30 E-value=11 Score=37.70 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCC--cchhhHHhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSS--LSQQITYKY 218 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~--~~~~vty~Y 218 (406)
.++|.....++......- -...+..+....|.|..+|..+|+++-+..+.+. ++.. ...++ -.+..+-++
T Consensus 314 ~~eA~~~~~~~L~i~~~~-----lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 314 PSELLEICELSQEKMSSV-----FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY--SKHYPVYSLNVASMWL 386 (433)
T ss_dssp HHHHHHHHHHHHHHHTTT-----BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHSCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCc-----cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HHHcCCCChHHHHHHH
Confidence 455555555555442211 1224567889999999999999999988887643 3321 01111 134456678
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
-+|.++..+|+|.+|...+.+|+..
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8999999999999999999999984
No 134
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=70.77 E-value=45 Score=31.44 Aligned_cols=131 Identities=11% Similarity=0.118 Sum_probs=75.9
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCChhhhchhc-hh-h----hHHHHHHHH
Q psy9768 218 YYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKYD-LL-Q----LWDVTVAVK 291 (406)
Q Consensus 218 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~-l~-~----y~~l~~aik 291 (406)
|=.||.++.++++-+|+.+.-.|+.+--. | .-+-.|..|+...|.+-. +. + |.+|+. .
T Consensus 134 y~~~K~~l~~~~~ldAY~~vi~aLhh~Ar------------L--~vie~G~~pe~tvw~qv~~i~~~iyKLyeEL~~--s 197 (290)
T 3c18_A 134 FQDGRNLFSRGNYYDAYTHVHHALHHLAR------------L--SVLEKGAHPEVVVWEQARLDDPDVYKLYEQLLL--S 197 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------H--HHHHTTCCCCTTHHHHHHHHCHHHHHHHHHHHT--C
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHH------------h--heeccCCcCchhHHHHHHhcCHHHHHHHHHHhc--C
Confidence 56789999999999999999999998221 1 113469999999997642 21 1 233332 1
Q ss_pred hCCHHHHHHHHHHhHHHHHHhcHHHHHHhhHHHH--HHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHH
Q psy9768 292 GGQINQLSDAMTKHQTFFIKCGIYLILEKLKMIT--YRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLC 369 (406)
Q Consensus 292 ~Gnl~~f~~~l~~~~~~f~~~glyl~lerlr~lv--~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcila 369 (406)
..++.+=-+.+=-.-++++. .+++..+ +.++++ .+....++..+..-..+.. + .-++|-+|-
T Consensus 198 ~E~lekrielllla~Ef~I~-------sk~~~~~~~Ll~~m~-----ek~~~wS~~Ei~~~p~~~~---~-~idle~iL~ 261 (290)
T 3c18_A 198 EETLEQRIHLALIGLEHLLQ-------SKVLSGGKYLFEVMR-----ERDRPWTMHELMEESRLTE---L-KVDLGSLVD 261 (290)
T ss_dssp CSCHHHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHT-----TSSSCEEHHHHHHCGGGGG---G-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----hcCCCCCHHHHhcCccccc---c-cCCHHHHHH
Confidence 22322222222222233333 3333322 122222 1445677777765544422 1 257889999
Q ss_pred HHHHcCceeEE
Q psy9768 370 NLIHDGQLKGY 380 (406)
Q Consensus 370 nLI~~g~IkGy 380 (406)
.|+.+|+|+=.
T Consensus 262 ~Lv~k~lI~~~ 272 (290)
T 3c18_A 262 FFIRKGLIRIS 272 (290)
T ss_dssp HHHHTTSEEEE
T ss_pred HHHHcCCeEEe
Confidence 99999999743
No 135
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=70.10 E-value=13 Score=35.29 Aligned_cols=65 Identities=15% Similarity=-0.080 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
....+-..|++.|+++-+..+++.+-... |. .....+.+|..++..+++.+|.+.+..|+...|.
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGD-----PD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 34444556666777776666665432211 11 1345566666666666666666666666666554
No 136
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=69.99 E-value=13 Score=34.35 Aligned_cols=117 Identities=11% Similarity=-0.038 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVG 221 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~G 221 (406)
.++|...+.++....-.+.. ......|...+.+.+-.+|.+.|+++-+...++..-...+. .......+.+|
T Consensus 149 ~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~l~ 220 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKY---LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-----MIDPDLQTGLG 220 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHC---C-------------------CCHHHHHHHHHHHHHHHHSCS-----SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchH---HHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-----ccCHHHHHHHH
Confidence 56666666666654222111 11122255667778889999999999998887654332111 11234568899
Q ss_pred hhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcCCCCC
Q psy9768 222 RKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPT 271 (406)
Q Consensus 222 r~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yLIp~~lllG~~P~ 271 (406)
.++...++|.+|.+.+..|+...|.... ++..+.-+-.-.|++..
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYS-----LWNRLGATLANGDRSEE 265 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999887542 33334444445666543
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=69.80 E-value=38 Score=33.67 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKY 218 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~Y 218 (406)
...++|.....++... + ++ + ....+.+-.+|+++++++.+...++. ++-.| .....+|
T Consensus 20 g~~~~A~~~~~~Al~~---~--p~---~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~ 78 (477)
T 1wao_1 20 KDYENAIKFYSQAIEL---N--PS---N-----AIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYY 78 (477)
T ss_dssp TCHHHHHHHHHHHHHH---C--TT---C-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHH
T ss_pred CCHHHHHHHHHHHHHh---C--Cc---c-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHH
Confidence 3477788877777765 1 11 0 23445667789999999999877644 44322 1245678
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 219 Y~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.+|..+...++|.+|.+++..|++..|...
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~ 108 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKVKPHDK 108 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999999999988654
No 138
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=68.24 E-value=11 Score=33.00 Aligned_cols=66 Identities=11% Similarity=-0.019 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
...+-.+|++.|+++.+...++..-... |. ....++.+|.+++..+++.+|.+.+..|+...|...
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 80 FNYLGIYLTQAGNFDAAYEAFDSVLELD-----PT--YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-----cc--ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 3456678999999999988775543221 11 135678999999999999999999999999888654
No 139
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=67.17 E-value=28 Score=33.45 Aligned_cols=67 Identities=7% Similarity=-0.008 Sum_probs=51.1
Q ss_pred HHHHHHHHHHh---cCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFR---ISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfk---l~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++ .|+++.+...++..-... | +....++.+|.++...|++.+|.+.+..|+...|...
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLD-----P--RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-----c--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 44566778889 999999988776543221 1 1235678899999999999999999999999988643
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=67.17 E-value=26 Score=32.90 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCC-------cchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHh
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSS-------LSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRC 244 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~-------~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 244 (406)
....+.+-..|++.++++.+...++ +++-.|....+. ....+..++.+|.+++..++|.+|.+++..|+...
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3344556677899999999977764 444332211111 12235788999999999999999999999999988
Q ss_pred cccc
Q psy9768 245 HKSS 248 (406)
Q Consensus 245 ~~~~ 248 (406)
|...
T Consensus 227 p~~~ 230 (336)
T 1p5q_A 227 SNNE 230 (336)
T ss_dssp TTCH
T ss_pred CCcH
Confidence 7643
No 141
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=67.00 E-value=9.3 Score=30.03 Aligned_cols=62 Identities=10% Similarity=-0.136 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
..+-.+|.+.|+++.+...++. ++-.|- -...++.+|.++...|++.+|.++|..|+..-|.
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARMLDPK--------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456678899999998777644 443221 1346789999999999999999999999987664
No 142
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=66.58 E-value=26 Score=32.65 Aligned_cols=63 Identities=11% Similarity=-0.024 Sum_probs=41.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+-.+|++.++++-+...++..-... | .....++.+|..++..|++.+|.+.+..|+...|..
T Consensus 38 ~l~~~~~~~~~~~~a~~~~~~a~~~~-----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 38 LLSSIHFQCRRLDRSAHFSTLAIKQN-----P--LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-----C--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch
Confidence 44556778888887776664432211 1 123456777888888888888888888888776654
No 143
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=66.57 E-value=8.6 Score=29.62 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=32.3
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.....++.+|.+++..++|.+|.+++..|+...|..
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 456788999999999999999999999999988865
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=65.78 E-value=24 Score=33.80 Aligned_cols=102 Identities=12% Similarity=0.126 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhcc-CC-CCCCCCcchhhHHhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIES-SQ-YKDKSSLSQQITYKYY 219 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~-~~-~~~~~~~~~~vty~YY 219 (406)
.++|.+.+.++..+...+.. +.-........+.+-.+|+.+|+++-+...+..... .+ ..+.+. .+.......
T Consensus 67 ~~eAl~~~~kAl~~~~~~~~----~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-~~~~~~~~~ 141 (472)
T 4g1t_A 67 NEAALECLRKAEELIQQEHA----DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-IESPELDCE 141 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHSG----GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCc----cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-hhhHHHHHH
Confidence 45555666666555443321 111223444556778899999999999877654332 11 111111 112222334
Q ss_pred hhhh--hhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 220 VGRK--AMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 220 ~Gr~--~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.|.. .+-.++|.+|.++|..|+...|...
T Consensus 142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~ 172 (472)
T 4g1t_A 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNP 172 (472)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCCCCH
Confidence 4543 4456789999999999999888654
No 145
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=65.15 E-value=10 Score=32.90 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHhcCChhhHHHHHH---HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 181 KVYFRISKLHLMKPLIR---AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 181 kiYfkl~~~~l~~~~~~---~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
+..+..+.++-+..+-. ++.. +..+.++..+..+-.+|.|-..+-+++|..|...+..|+..|-.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~-~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSN-NNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-HSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhc-CCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 34444555555444332 2221 23456788899999999999999999999999999999998763
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=64.81 E-value=17 Score=29.77 Aligned_cols=66 Identities=8% Similarity=-0.121 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhh-hhhhccH--HHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRK-AMFDSDY--KTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~-~~~~~~~--~~A~~~L~~A~~~c~~~ 247 (406)
....+-.+|+..|+++.+...++..-... |. -....+..|.+ ++..+++ .+|.+.+..|+...|..
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~--~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLR-----GE--NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CS--CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CC--CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 34556678899999999988775533211 11 13566788888 7888998 99999999999987754
No 147
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=64.52 E-value=22 Score=32.03 Aligned_cols=61 Identities=15% Similarity=-0.065 Sum_probs=33.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
+-..|++.|+++-+...++.+-... |. .....+..|..++..++|.+|.+.+..|+...|.
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~-----p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 69 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGD-----PD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD 69 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-----cc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3445666666666666554432211 11 1245566666666666666666666666665553
No 148
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=64.22 E-value=7.5 Score=36.82 Aligned_cols=65 Identities=5% Similarity=0.005 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+.+.+-.+|+++++++.|...++ +++..| +.+..+|.+|..++..++|.+|.++|..|+...|.+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 44566778999999999877664 444322 224667999999999999999999999999887754
No 149
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=64.12 E-value=12 Score=32.52 Aligned_cols=65 Identities=5% Similarity=-0.054 Sum_probs=50.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcch-hhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQ-QITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~-~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+-..|++.|+++-+...+..+-.. +|.+. ...-.|.+|..++-.++|.+|.+.+..++...|.+.
T Consensus 10 ~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 10 TAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345689999999998888765432 22221 234568899999999999999999999999998764
No 150
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=63.78 E-value=1.1e+02 Score=29.51 Aligned_cols=65 Identities=6% Similarity=-0.004 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+-.+|++.|+++.+...++..-...+ .. ....+.+|.++...+++.+|.+.+..|+...|..
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLNP-----EN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34445556666666666655543322111 00 1334556666666667777777776666665544
No 151
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=63.59 E-value=17 Score=36.79 Aligned_cols=74 Identities=8% Similarity=-0.003 Sum_probs=57.2
Q ss_pred chhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCc--chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 168 KKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSL--SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 168 Kk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~--~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
.+..+....|.|..+|...|+++-+..+... ++-. ...++. .+..+-++-+|.++..+|+|.+|...+..|+..
T Consensus 346 ~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~--~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 346 TNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY--MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3567899999999999999999999887643 3321 011111 345666788999999999999999999999984
No 152
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.45 E-value=76 Score=29.45 Aligned_cols=179 Identities=8% Similarity=0.033 Sum_probs=84.9
Q ss_pred HHHHHhcCChhhHHHHHHHhccC----CCC----CCC-C--cchh---hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 180 FKVYFRISKLHLMKPLIRAIESS----QYK----DKS-S--LSQQ---ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i~~~----~~~----~~~-~--~~~~---vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
++.-|.-++++.|.++++.+.-. ++. +.- + ..|. ..-+-..+++++-.+|+.+=..+.++=-..+.
T Consensus 11 l~~~~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~ 90 (274)
T 4b4t_T 11 LSIAFENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYF 90 (274)
T ss_dssp --------------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 34455667788888888777543 111 000 0 1111 12445677788888888765555444333332
Q ss_pred c--c---chHHHHHHHHHHHHHHHhcCCCCChhh-hc----------hhchhhh-HHHHHHHHhCCHHHHHHHHHHhHH-
Q psy9768 246 K--S---SKKNKRLILIYLVPVKMLLGFMPTREL-LD----------KYDLLQL-WDVTVAVKGGQINQLSDAMTKHQT- 307 (406)
Q Consensus 246 ~--~---~~~nk~~IL~yLIp~~lllG~~P~~~l-l~----------~~~l~~y-~~l~~aik~Gnl~~f~~~l~~~~~- 307 (406)
. . ..+|+-.++-|=+..-|..|+.+.+.. |+ +.+...| ..+-+++-.||..+|=+.+.+...
T Consensus 91 d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p 170 (274)
T 4b4t_T 91 SNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQN 170 (274)
T ss_dssp TTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTC
T ss_pred hhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCC
Confidence 1 1 235666666554444444566654321 11 1111122 478899999999999888776321
Q ss_pred -HHHHhcHHHHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHH
Q psy9768 308 -FFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLC 369 (406)
Q Consensus 308 -~f~~~glyl~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcila 369 (406)
.....=+-.++++.|.-..+.+.| .+.+||++..+.-|.+. +.+|+...+.
T Consensus 171 ~~~~~~f~d~l~~~iR~~a~~~i~k------aY~~i~l~~~~~~L~F~-----s~~e~~~F~~ 222 (274)
T 4b4t_T 171 ISEFDSFTDILKSAIRDEIAKNTEL------SYDFLPLSNIKALLFFN-----NEKETEKFAL 222 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH------HCSSCCHHHHHHHHTCC-----SHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH------HHhhcCHHHHHHHhCCC-----CHHHHHHHHH
Confidence 111111124568888888877776 34689999999999772 4566654443
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=63.39 E-value=30 Score=27.94 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhccC---CCCC--CCC-----cchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHh
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIR-AIESS---QYKD--KSS-----LSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRC 244 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~-~i~~~---~~~~--~~~-----~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c 244 (406)
....=..||+.|+++.+-..+. +++-. +..+ .-+ ....+..++.+|..++..++|.+|..++..|+...
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 3444556788899888866553 33321 0000 001 33456778999999999999999999999999987
Q ss_pred cccc
Q psy9768 245 HKSS 248 (406)
Q Consensus 245 ~~~~ 248 (406)
|...
T Consensus 94 p~~~ 97 (162)
T 3rkv_A 94 ETNE 97 (162)
T ss_dssp TTCH
T ss_pred Ccch
Confidence 7654
No 154
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=62.26 E-value=54 Score=29.88 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHH
Q psy9768 179 LFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIY 258 (406)
Q Consensus 179 l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~y 258 (406)
.+.++...|+++-+..+++.+-.. .|. ....++-+|..++..|+|.+|.+.|..|+..-|.+.. .+..
T Consensus 172 ~~~l~~~~~~~~eA~~~~~~~l~~-----~p~--~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~-----~l~~ 239 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADK-----CSP--TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE-----TLIN 239 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHH-----SCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HHHH
T ss_pred HHHHHhCchHHHHHHHHHHHHHHh-----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHH
Confidence 334444456666665555443221 111 1344555677777777777777777777776554432 2333
Q ss_pred HHHHHHhcCCCC
Q psy9768 259 LVPVKMLLGFMP 270 (406)
Q Consensus 259 LIp~~lllG~~P 270 (406)
++-+...+|+.+
T Consensus 240 l~~~~~~~g~~~ 251 (291)
T 3mkr_A 240 LVVLSQHLGKPP 251 (291)
T ss_dssp HHHHHHHTTCCH
T ss_pred HHHHHHHcCCCH
Confidence 444444566643
No 155
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=61.19 E-value=23 Score=35.09 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=57.1
Q ss_pred cchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCc--chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 167 SKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSL--SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 167 sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~--~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
..+..+....|.|..+|...|+++-+..+.+. ++-. ...++. .+..+-++-+|.++..+|+|.+|...+.+|+..
T Consensus 323 ~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~--~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 323 DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY--RIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH--HHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35667899999999999999999988777643 3221 011111 344566788999999999999999999999984
No 156
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=61.15 E-value=33 Score=31.89 Aligned_cols=29 Identities=7% Similarity=-0.232 Sum_probs=15.6
Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 217 KYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 217 ~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
++.+|..+...+++.+|.+.+..|+..-|
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p 268 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQP 268 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34455555555555555555555555444
No 157
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=59.84 E-value=7.6 Score=33.22 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=32.1
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
++.-++||+|.-++..++|.+|.+++..+++.=|.
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 45689999999999999999999999999998774
No 158
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=58.98 E-value=23 Score=30.36 Aligned_cols=60 Identities=8% Similarity=0.096 Sum_probs=45.0
Q ss_pred HHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhh----------------hhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 181 KVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYY----------------VGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 181 kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY----------------~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
..+++.|+++.+...++.. +..| +....+|+ +|..+...++|.+|.+++..|+..
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNI--------DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH--------HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--------CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4577889998887776543 3221 11234456 999999999999999999999999
Q ss_pred hcccc
Q psy9768 244 CHKSS 248 (406)
Q Consensus 244 c~~~~ 248 (406)
.|...
T Consensus 84 ~p~~~ 88 (208)
T 3urz_A 84 APNNV 88 (208)
T ss_dssp CTTCH
T ss_pred CCCCH
Confidence 88654
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=58.66 E-value=16 Score=26.85 Aligned_cols=33 Identities=9% Similarity=0.007 Sum_probs=29.1
Q ss_pred HHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 215 TYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 215 ty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.-.+..|..++..++|.+|.+++..|+...|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 37 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN 37 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 456789999999999999999999999987754
No 160
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=58.25 E-value=22 Score=37.14 Aligned_cols=83 Identities=11% Similarity=0.119 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHH
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRL 254 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~ 254 (406)
...+-.+|++.|+++.+...++.. +..| +-...+|+.|..++..++|.+|.++|..|++.-|....-
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~---- 503 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAERVG--------WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP---- 503 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH----
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH----
Confidence 345567789999999998877543 3222 124678999999999999999999999999998876532
Q ss_pred HHHHHHHHHHhcCCCCC
Q psy9768 255 ILIYLVPVKMLLGFMPT 271 (406)
Q Consensus 255 IL~yLIp~~lllG~~P~ 271 (406)
+..|--+..-+|++..
T Consensus 504 -~~~lg~~~~~~g~~~~ 519 (681)
T 2pzi_A 504 -KLALAATAELAGNTDE 519 (681)
T ss_dssp -HHHHHHHHHHHTCCCT
T ss_pred -HHHHHHHHHHcCChHH
Confidence 2223333445687755
No 161
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=56.53 E-value=17 Score=27.55 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=29.9
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+|.+|.+++..++|.+|.+++..|+...|..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 52 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY 52 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc
Confidence 3567899999999999999999999999987754
No 162
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=56.42 E-value=23 Score=34.41 Aligned_cols=64 Identities=8% Similarity=0.023 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
..+-..|++.|+++-+...++.+-... | +.+..++.+|.+++..++|.+|.+.+..|+...|..
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 92 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELD-----P--NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHC-----T--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-----C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCch
Confidence 334456677777777766654432211 1 113556777777777777777777777777766653
No 163
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=56.12 E-value=36 Score=25.25 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=40.1
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCC
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKT 393 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~ 393 (406)
...+++++++.-+. +..+++..-+-.|..+|.|.|.|+-.-+.+-+|..
T Consensus 19 ~Kvv~LedLA~~F~------l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 19 SKVVLLEDLAFQMG------LRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp CSEECHHHHHHHHC------SCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred cCeeeHHHHHHHhC------CChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 45689999988884 46688889999999999999999987666666654
No 164
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=55.98 E-value=38 Score=29.15 Aligned_cols=64 Identities=6% Similarity=-0.092 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhh-----------ccHHHHHHHHHHHHHHh
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFD-----------SDYKTANEYLTFAFQRC 244 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~-----------~~~~~A~~~L~~A~~~c 244 (406)
..+-.+|.+.|+++-+...++. ++-.|. ....++.+|.++... |++.+|.+.+..|+..-
T Consensus 43 ~~lg~~~~~~g~~~~A~~~~~~al~~~P~--------~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 43 YWLARTQLKLGLVNPALENGKTLVARTPR--------YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence 3455678899999999877654 443321 235668899999999 99999999999999987
Q ss_pred cccc
Q psy9768 245 HKSS 248 (406)
Q Consensus 245 ~~~~ 248 (406)
|...
T Consensus 115 P~~~ 118 (217)
T 2pl2_A 115 PRYA 118 (217)
T ss_dssp TTCH
T ss_pred cccH
Confidence 7643
No 165
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=54.30 E-value=77 Score=29.17 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++.......... ...+.....+.+-.+|...|+++-+...+.. ++-.+-.. + .+.+..++.+
T Consensus 109 ~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~-~~~~~~~~~l 180 (373)
T 1hz4_A 109 LQTAWETQEKAFQLINEQHLE-----QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ--P-QQQLQCLAML 180 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT-----TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--G-GGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc-----cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC--c-HHHHHHHHHH
Confidence 455556666666554322110 0123444556677889999999999887754 33322111 1 1244566789
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
|+++...|++.+|.+++..|....+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~ 206 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGN 206 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999987654
No 166
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=54.14 E-value=43 Score=33.58 Aligned_cols=67 Identities=9% Similarity=-0.090 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
....+-.+|++.|+++.+...++..-... | +....++.+|.++...++|.+|.+++..|+...|...
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALH-----P--GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTS-----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 34556678889999999988775543221 1 1245678899999999999999999999999877653
No 167
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=53.84 E-value=26 Score=33.67 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=30.1
Q ss_pred HHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 181 KVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 181 kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
..|++.|+++.+...++.+-... |. ...++.+|..++..++|.+|.+.+..|+...|.
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-----p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 71 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK-----ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD 71 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC-----CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-----cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH
Confidence 44556666666655554332211 10 234455566666666666666666666655543
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=53.65 E-value=47 Score=32.65 Aligned_cols=77 Identities=14% Similarity=-0.028 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCC-------cchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 172 MLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSS-------LSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 172 ~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~-------~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
.....+.+=..|++.++++.|...++ +++-.+....+. ....+..++.+|.+++..++|.+|.+++..|+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33445566678999999999977764 444222211111 1223677889999999999999999999999998
Q ss_pred hcccc
Q psy9768 244 CHKSS 248 (406)
Q Consensus 244 c~~~~ 248 (406)
.|...
T Consensus 347 ~p~~~ 351 (457)
T 1kt0_A 347 DSANE 351 (457)
T ss_dssp STTCH
T ss_pred CCccH
Confidence 77643
No 169
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=53.29 E-value=37 Score=36.07 Aligned_cols=64 Identities=13% Similarity=-0.024 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
.+.|=.+|.+.|+++-+...++ +++-.|- ....++.+|.++...|+|.+|.+++.+|++.-|..
T Consensus 12 l~nLG~~~~~~G~~~eAi~~~~kAl~l~P~--------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 12 LNNLANIKREQGNIEEAVRLYRKALEVFPE--------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3445566777777777766653 3443221 13445667777777777777777777777766653
No 170
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=53.11 E-value=8.9 Score=29.34 Aligned_cols=33 Identities=3% Similarity=0.033 Sum_probs=29.9
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
++=.+++|..++.+++|.+|..+++..+..-|.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 556788999999999999999999999998777
No 171
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=52.44 E-value=39 Score=33.91 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+-.+|.+.|+++.+...++. ++..| . ....++.+|.++...+++.+|.+++..|+...|..
T Consensus 59 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 59 AVARLGRVRWTQQRHAEAAVLLQQASDAAP------E--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 345566789999999999877754 34322 1 14567889999999999999999999999987754
No 172
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=51.99 E-value=41 Score=33.17 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhh
Q psy9768 143 ETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGR 222 (406)
Q Consensus 143 e~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr 222 (406)
++|...+.++... | ++. ....+.+-.+|++.|+++.+...++..-.. .|. ...++.+|.
T Consensus 120 ~~A~~~~~~al~~---~--p~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~---~~~~~~lg~ 178 (474)
T 4abn_A 120 PEAEVLLSKAVKL---E--PEL--------VEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN---KVSLQNLSM 178 (474)
T ss_dssp HHHHHHHHHHHHH---C--TTC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC---HHHHHHHHH
T ss_pred HHHHHHHHHHHhh---C--CCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC---HHHHHHHHH
Confidence 6666666666554 1 110 123455667899999999998887553322 133 367889999
Q ss_pred hhhhh---------ccHHHHHHHHHHHHHHhcccch
Q psy9768 223 KAMFD---------SDYKTANEYLTFAFQRCHKSSK 249 (406)
Q Consensus 223 ~~~~~---------~~~~~A~~~L~~A~~~c~~~~~ 249 (406)
++... ++|.+|.+++..|+...|....
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 99999 9999999999999999887543
No 173
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=51.98 E-value=15 Score=27.40 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.9
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+|.-.+.+|++.+|-.||..|+.-||.-
T Consensus 23 ~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 23 LGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 5777788999999999999999999974
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.39 E-value=32 Score=31.18 Aligned_cols=64 Identities=11% Similarity=-0.137 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+-..|++.|+++-+...++. ++..| +...+++..|..++..++|.+|.+.+..|+..-|...
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNP--------LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 3445678899999999887754 44322 1246788999999999999999999999999876543
No 175
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=50.90 E-value=85 Score=33.24 Aligned_cols=86 Identities=16% Similarity=0.022 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|.....++... +++. ....+.+=.+|.++|+++-+...++ +++-.| +....++.+
T Consensus 25 ~~eAi~~~~kAl~l-----~P~~--------~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--------~~~~a~~nL 83 (723)
T 4gyw_A 25 IEEAVRLYRKALEV-----FPEF--------AAAHSNLASVLQQQGKLQEALMHYKEAIRISP--------TFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHH-----CSCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHH
Confidence 67777776666654 1111 1233445567888999998877664 444322 123456788
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|.++...+++.+|.+++..|++.-|...
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999998877653
No 176
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=50.14 E-value=1.6e+02 Score=27.40 Aligned_cols=90 Identities=7% Similarity=-0.035 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHh-ccCCCCCCCCcchhhHHhhhh
Q psy9768 142 LETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAI-ESSQYKDKSSLSQQITYKYYV 220 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i-~~~~~~~~~~~~~~vty~YY~ 220 (406)
.++|...+.++.... ++ ...........+..+|.+.|+++-+...++.. +..| . .....+.+
T Consensus 273 ~~~A~~~~~~~l~~~-----p~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p------~--~~~~~~~l 335 (450)
T 2y4t_A 273 YTDATSKYESVMKTE-----PS----IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP------D--NVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHC-----CS----SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------T--CHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----Cc----chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------c--cHHHHHHH
Confidence 566666666655431 11 11122445677788999999999998887654 3221 1 13567889
Q ss_pred hhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 221 GRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 221 Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|..+...+++.+|.+.+..|+...|.+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchH
Confidence 9999999999999999999999877653
No 177
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=49.46 E-value=48 Score=31.98 Aligned_cols=64 Identities=16% Similarity=0.032 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhcc-HHHHHHHHHHHHHHhccc
Q psy9768 176 VNQLFKVYFRISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSD-YKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 176 ~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~-~~~A~~~L~~A~~~c~~~ 247 (406)
.+.+-.+|.+.|+++-+-..++. ++-.| .-.+.+++.|.++...++ |.+|.+++..|+...|..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P--------~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNA--------ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCc--------cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 33344556777777776665543 33221 114566777777777775 777777777777776654
No 178
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=45.69 E-value=89 Score=26.77 Aligned_cols=96 Identities=9% Similarity=0.046 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCCCCcccchhcHHHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhh
Q psy9768 140 DALETTTEMLMTCFRICTSDNRTSENDSKKWGMLPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYY 219 (406)
Q Consensus 140 ~~le~~a~~i~~~F~~c~~D~~~~~~~sKk~g~~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY 219 (406)
..+++.-++-.+++... +.+..+.|--|..+=.=+-.|..+++++-|+.+++.+-+. ...| ..=.+.|
T Consensus 33 ~~l~rlrd~YerAia~~------Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~--hKkF-AKiwi~~--- 100 (161)
T 4h7y_A 33 ALLNKLIGRYSQAIEAL------PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN--CKKF-AFVHISF--- 100 (161)
T ss_dssp HHHHHHHHHHHHHHHHS------CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH--CTTB-HHHHHHH---
T ss_pred hHHHHHHHHHHHHHHcC------CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hHHH-HHHHHHH---
Confidence 45665555555555432 2224667776666666666778889999999999887442 3345 2222333
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
+.+-+-+++...|.+-|..|+..||...
T Consensus 101 -AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 101 -AQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -HHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -HHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 5566679999999999999999999643
No 179
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=45.48 E-value=77 Score=28.81 Aligned_cols=66 Identities=8% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhh--hhhhccHHHHHHHHHHHHHHhccc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRK--AMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~--~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
....+..+|.++|+++.+...++.+.... |.. ..+....|.. +.-.+++.+|...|..+...+|.+
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-----p~~--~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~ 199 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD-----EDA--TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----cCc--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc
Confidence 44456678889999998888876654321 111 1223333322 223478999999999999887764
No 180
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=43.84 E-value=21 Score=27.99 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.7
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 220 VGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 220 ~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
+|.-.+.+|++..|-.||..|+.-|+.-
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 5666788899999999999999999973
No 181
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=40.79 E-value=42 Score=23.77 Aligned_cols=35 Identities=14% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCcee
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLK 378 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~Ik 378 (406)
+.-.+.++.|...+. ++.|||-.+|.+|=.+|+|+
T Consensus 22 sGGildI~~~a~kyg------V~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 22 NGGFLDIEHFSKVYG------VEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp TTSEEEHHHHHHHHC------CCHHHHHHHHHHHHHTTSEE
T ss_pred cCCEEeHHHHHHHhC------CCHHHHHHHHHHHHHCCCee
Confidence 446789999998883 67899999999999999996
No 182
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=40.50 E-value=35 Score=32.65 Aligned_cols=71 Identities=13% Similarity=0.013 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHH-HHhccCC-C-CCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLI-RAIESSQ-Y-KDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~-~~i~~~~-~-~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
+.|.|=.+|+..|+++-+-..+ ++++-.+ . .+... ...+.-..-+|.++...|+|.+|.+++..|...++.
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~-~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAE-IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCT-TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccc-hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 4477888999999999885554 4444210 0 11111 122333466899999999999999999999987664
No 183
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=40.11 E-value=42 Score=27.57 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=31.8
Q ss_pred hhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 212 QQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 212 ~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
++--|+||+|.-+.--++|.+|..++...++.=|.
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 56689999999999999999999999999998774
No 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=39.52 E-value=39 Score=24.40 Aligned_cols=31 Identities=13% Similarity=-0.016 Sum_probs=26.9
Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 218 YYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 218 YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
|-.|..++..++|.+|.+.+..|+...|...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 34 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGK 34 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 5578889999999999999999999877643
No 185
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=36.39 E-value=67 Score=30.97 Aligned_cols=66 Identities=15% Similarity=-0.006 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 175 FVNQLFKVYFRISK-LHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 175 l~n~l~kiYfkl~~-~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
..+.+-.+|.++|+ ++-+-..++. ++-. |.. ...+|+.|.++...++|.+|.+++..|+..-|...
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------P~~--~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------PKN--YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------TTC--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC------CCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH
Confidence 44555667888897 8877666544 3322 222 45678899999999999999999999999888654
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=35.50 E-value=43 Score=33.25 Aligned_cols=59 Identities=19% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHhcCChhhHHHHHH-HhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccc
Q psy9768 182 VYFRISKLHLMKPLIR-AIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSS 248 (406)
Q Consensus 182 iYfkl~~~~l~~~~~~-~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~ 248 (406)
.|++.++++-|...++ +++-.| +....++.+|..+...++|.+|.+++..|++.-|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 74 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNP--------SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 74 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 4667888888877664 344322 1256778999999999999999999999999877543
No 187
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=35.01 E-value=90 Score=27.22 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=34.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhh----hccHHHHHHHHHHHHHH
Q psy9768 178 QLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMF----DSDYKTANEYLTFAFQR 243 (406)
Q Consensus 178 ~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~----~~~~~~A~~~L~~A~~~ 243 (406)
.+=.+|++.++++.+...++..-... -..-.|.+|.++.. .+++.+|.+++..|...
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 34456677777777766654432210 01234667777777 77777777777777765
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=33.07 E-value=1.1e+02 Score=29.13 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHH-hccCCC-------CC-CCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRA-IESSQY-------KD-KSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~-i~~~~~-------~~-~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
....+-..|++.++++.+...++. ++-.+. .. .--.......++.+|..++..++|.+|.+++..|+...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 345556678999999988766543 331000 00 001233456778899999999999999999999999877
Q ss_pred ccc
Q psy9768 246 KSS 248 (406)
Q Consensus 246 ~~~ 248 (406)
...
T Consensus 305 ~~~ 307 (370)
T 1ihg_A 305 SNT 307 (370)
T ss_dssp TCH
T ss_pred hhH
Confidence 543
No 189
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.03 E-value=1.8e+02 Score=23.54 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=57.7
Q ss_pred HHHhCCHHHHHHHHHHh-----HHHHHHhcHHHHHHhhH---HHHHHHHHHHHHhcCCCccccHHHHHHHhcccc--CCC
Q psy9768 289 AVKGGQINQLSDAMTKH-----QTFFIKCGIYLILEKLK---MITYRNFYNIHKDINKNSVVELQQFLQALHYVE--GKH 358 (406)
Q Consensus 289 aik~Gnl~~f~~~l~~~-----~~~f~~~glyl~lerlr---~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~--~~~ 358 (406)
-+..||+....+++++. ...|++..+-..+|+-. .-..-.|++..+ +...|+-+.|..++.-.- .+|
T Consensus 17 Y~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~---~~~~is~~q~~~Gf~~v~~~l~D 93 (129)
T 2nsz_A 17 YLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW---KSSTITIDQMKRGYERIYNEIPD 93 (129)
T ss_dssp HHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---HCCCcCHHHHHHHHHHHHhhChH
Confidence 34669999999999864 35799999999998641 223344555443 356789999988886321 111
Q ss_pred ------CCHHHHHHHHHHHHHcCcee
Q psy9768 359 ------IDLEDTHCLLCNLIHDGQLK 378 (406)
Q Consensus 359 ------~~~devEcilanLI~~g~Ik 378 (406)
--.+-+..+++.+|.+|.|-
T Consensus 94 l~lDiP~a~~~l~~~v~~ai~~g~l~ 119 (129)
T 2nsz_A 94 INLDVPHSYSVLERFVEECFQAGIIS 119 (129)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred hhcCccchHHHHHHHHHHHHHCCCCC
Confidence 12355778888888888763
No 190
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=30.82 E-value=2.6e+02 Score=26.40 Aligned_cols=70 Identities=7% Similarity=0.066 Sum_probs=46.5
Q ss_pred hCCHHHHHHHHHHhHHHHHHhcHH-HHHHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHH
Q psy9768 292 GGQINQLSDAMTKHQTFFIKCGIY-LILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLL 368 (406)
Q Consensus 292 ~Gnl~~f~~~l~~~~~~f~~~gly-l~lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcil 368 (406)
.||...|=+.+......++...+. ..+.+.|..+++.+.|- +. .+...+|++.++.-|.+. +.+|++..+
T Consensus 176 ~gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~ka-y~-~k~~~~pl~~L~~~L~Fd-----s~ee~~~F~ 246 (316)
T 3t5v_A 176 LNFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHT-LN-KKHKPIPFIYLENMLLFN-----NRQEIIEFC 246 (316)
T ss_dssp CCCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHH-SC-TTCCCEEHHHHHHHTTCS-----SHHHHHHHH
T ss_pred cchHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCCCCcCHHHHHHHhCCC-----CHHHHHHHH
Confidence 389999999888643334333333 34688898888887653 32 233679999999999762 456665554
No 191
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=30.45 E-value=30 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy9768 142 LETTTEMLMTCFRICTS 158 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~ 158 (406)
-|.||.+|+++|+.=+.
T Consensus 5 Ee~aA~vIQrA~R~yl~ 21 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLL 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47799999999997554
No 192
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=30.23 E-value=49 Score=27.54 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=31.7
Q ss_pred chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 211 SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 211 ~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.++--|.||++.=+.--++|.+|..+....++.-|.
T Consensus 75 ~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 75 SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 345689999999999999999999999988888774
No 193
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=28.23 E-value=91 Score=23.14 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=30.8
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEE
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGY 380 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGy 380 (406)
..+++++++...| +++.+-|.-.|..|..+|+|+-.
T Consensus 14 ~g~vsv~eLa~~l------~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 14 RGRMEAAQISQTL------NTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp SCSBCHHHHHHHT------TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCcHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEe
Confidence 4678999998888 46889999999999999998654
No 194
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=27.21 E-value=51 Score=26.09 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHcCceeEEEecCCcEEEEcCCC
Q psy9768 358 HIDLEDTHCLLCNLIHDGQLKGYISLAHQKVVLSKTD 394 (406)
Q Consensus 358 ~~~~devEcilanLI~~g~IkGyIsh~~~~lVlSk~~ 394 (406)
+++.+....++..|.++|+|+|.--... ..+++.-+
T Consensus 27 ~Ise~~~~~il~~L~d~GyI~Gv~~~~~-~~~i~~~~ 62 (102)
T 2hgc_A 27 GVTEDQFDDAVNFLKREGYIIGVHYSDD-RPHLYKLG 62 (102)
T ss_dssp TSCHHHHHHHHHHHHHHTSEECCEESSS-SEECCSSC
T ss_pred CCCHHHHHHHHHHHHHCCCccceEEEeC-cceeeccC
Confidence 4677889999999999999999754343 34444444
No 195
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=26.90 E-value=1.7e+02 Score=23.29 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=38.2
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCccccHHHHHHHhccccCCCCCHHHHHHHHH
Q psy9768 318 LEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLC 369 (406)
Q Consensus 318 lerlr~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~~~~~~~devEcila 369 (406)
+.||..+. +.+|.+|..-+++-+|++.+...+.-|-...++.+|+|-.+-
T Consensus 12 ~srLPelA--rilR~vFvaEkK~vl~~e~~~~ki~~Syr~~ls~~EmE~hl~ 61 (106)
T 3a4c_A 12 LERLPELA--RVLRNVFVSERKPALTMEVVCARMVDSCQTALSPGEMEKHLV 61 (106)
T ss_dssp HHHHHHHH--HHHHHHHHTCSSSEEEHHHHHHHHHHTSCCSCCHHHHHHHHH
T ss_pred HHhhHHHH--HHHHHHHHhcccCCccHHHHHHHHHhhhhccCCHHHHHHHHH
Confidence 34555544 567788888888999999999988876666689999997643
No 196
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.84 E-value=96 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=28.6
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeE
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKG 379 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkG 379 (406)
+..-.+.+.++..+ .++..+|..++.+|+.+|+|.=
T Consensus 48 g~~~ps~~~LA~~~------~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 48 GSYFPTPNQLQEGM------SISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TCCSCCHHHHHTTS------SSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCCCCHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEE
Confidence 34556777777666 4688999999999999999973
No 197
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=25.76 E-value=78 Score=26.44 Aligned_cols=38 Identities=8% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 338 KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 338 ~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
...++|+..+...+. ++...+-..+..|..+|+|+||-
T Consensus 14 ~~~~~s~~~la~~lg------~s~~tv~~rl~~L~~~g~i~~~~ 51 (162)
T 3i4p_A 14 EDSTLAVADLAKKVG------LSTTPCWRRIQKMEEDGVIRRRV 51 (162)
T ss_dssp TCSCSCHHHHHHHHT------CCHHHHHHHHHHHHHTTSSCCCC
T ss_pred HCCCCCHHHHHHHHC------cCHHHHHHHHHHHHHCCCeeece
Confidence 467899999999984 57889999999999999999863
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=25.64 E-value=1.5e+02 Score=25.07 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=29.4
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcc
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHK 246 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~ 246 (406)
.....-.|..++-.|+|.+|.++++.|++..|.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~ 43 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHT 43 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Confidence 455677899999999999999999999999887
No 199
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=25.51 E-value=1.1e+02 Score=22.95 Aligned_cols=54 Identities=7% Similarity=-0.032 Sum_probs=36.5
Q ss_pred HHHHHHHhcC---CCccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEEecC
Q psy9768 328 NFYNIHKDIN---KNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLA 384 (406)
Q Consensus 328 nL~kkv~~~~---~~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyIsh~ 384 (406)
.-++.+|... +.-.|+...+..+++-.|. .++.++++.++..+=.+| .|.|+.+
T Consensus 32 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~-~~~~~~~~~l~~~~D~d~--dg~i~~~ 88 (107)
T 2d58_A 32 EGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGV-PKTHLELKKLIGEVSSGS--GETFSYP 88 (107)
T ss_dssp HHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTC-CCCHHHHHHHHHHHCSSS--SSEECHH
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCC--CCeEcHH
Confidence 3345566554 4567999999999987664 468889988887653232 4666553
No 200
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=25.37 E-value=2e+02 Score=25.79 Aligned_cols=76 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhh---hccHHHHHHHHHHHHHHhcccchHH
Q psy9768 175 FVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMF---DSDYKTANEYLTFAFQRCHKSSKKN 251 (406)
Q Consensus 175 l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~---~~~~~~A~~~L~~A~~~c~~~~~~n 251 (406)
+-+.+...+.+.|+++-+..+++..-..++.+ +..|.|...+- .+++.+|.+.|..|+..+|....-.
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 206 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTR---------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV 206 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q ss_pred HHHHHHHH
Q psy9768 252 KRLILIYL 259 (406)
Q Consensus 252 k~~IL~yL 259 (406)
...+-.+.
T Consensus 207 ~~~~~~~~ 214 (308)
T 2ond_A 207 LAYIDYLS 214 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 201
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.18 E-value=94 Score=22.79 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 340 SVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 340 ~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
.+++...++..+. ++...|...|.+|..+|+|++.-
T Consensus 30 ~~~t~~eLA~~Lg------vs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 30 KATTAHDLSGKLG------TPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp SCEEHHHHHHHHC------CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCcCHHHHHHHHC------cCHHHHHHHHHHHHHCCCEEecC
Confidence 4799999999994 56789999999999999998753
No 202
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=24.69 E-value=4.1e+02 Score=24.85 Aligned_cols=121 Identities=9% Similarity=0.031 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCc--chhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc--c
Q psy9768 173 LPFVNQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSL--SQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS--S 248 (406)
Q Consensus 173 ~~l~n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~--~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~--~ 248 (406)
+.++.--+.+.-.-+++.-+-.++.-+.. .+|. +...-|. .++..|+|.+|++.|.......|.- .
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~-----~~p~~~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~~k 247 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQ-----TFPTWKTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVEQK 247 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHT-----TSCSHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHH-----hCCCcccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence 33333333333333377777666666543 3332 2223333 7899999999999999666665431 0
Q ss_pred ---hHHHHHHHHHHHHHHHhcCCCCChhhhchhc-hhhhHHHHHHHHhCCHHHHHHHHHHh
Q psy9768 249 ---KKNKRLILIYLVPVKMLLGFMPTRELLDKYD-LLQLWDVTVAVKGGQINQLSDAMTKH 305 (406)
Q Consensus 249 ---~~nk~~IL~yLIp~~lllG~~P~~~ll~~~~-l~~y~~l~~aik~Gnl~~f~~~l~~~ 305 (406)
.++--..|.-+|.+...+|+ +..+++++-. ..+=.|++.-+..-+ ..||+++.++
T Consensus 248 ~~~~p~~~~~LaN~i~l~~~lgk-~a~~l~~qL~~~~P~hp~i~d~~~k~-~~Fd~~~~ky 306 (310)
T 3mv2_B 248 ENAVLYKPTFLANQITLALMQGL-DTEDLTNQLVKLDHEHAFIKHHQEID-AKFDELVRKY 306 (310)
T ss_dssp HHHHSSHHHHHHHHHHHHHHTTC-TTHHHHHHHHHTTCCCHHHHHHHHHH-HHHHHHHHTC
T ss_pred ccCCCCCHHHHHHHHHHHHHhCh-HHHHHHHHHHHhCCCChHHHHHHHHH-HHHHHHHHHh
Confidence 12335567788899999998 7777765522 223344554444432 4777777765
No 203
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=24.58 E-value=76 Score=25.88 Aligned_cols=34 Identities=9% Similarity=-0.144 Sum_probs=29.9
Q ss_pred hHHhhhhhhhhhhhccHHHHHHHHHHHHHHhccc
Q psy9768 214 ITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKS 247 (406)
Q Consensus 214 vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~ 247 (406)
...+|.+|.++...|++.+|..+|..+++.-|..
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 4567899999999999999999999999987753
No 204
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=23.55 E-value=1e+02 Score=23.44 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=31.9
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEEE
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYI 381 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGyI 381 (406)
..+++++++...| +++.+-|.-.|..|..+|+|+-.-
T Consensus 14 ~g~vsv~eLA~~l------~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 14 QGRMEAKQLSARL------QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp SCSEEHHHHHHHT------TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCcHHHHHHHH------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4678999998888 468899999999999999998764
No 205
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=23.52 E-value=1.4e+02 Score=24.11 Aligned_cols=62 Identities=10% Similarity=-0.125 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHH
Q psy9768 177 NQLFKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQR 243 (406)
Q Consensus 177 n~l~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~ 243 (406)
..+-.+|.+.|+++-+...++.+-... |......-++.+|.++...|++.+|..++..|+..
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVN-----LGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-----cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 445667899999999988876543221 11111234678899999999999999999988763
No 206
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.43 E-value=2.7e+02 Score=23.17 Aligned_cols=87 Identities=10% Similarity=0.134 Sum_probs=57.8
Q ss_pred HHHhCCHHHHHHHHHHh-----HHHHHHhcHHHHHHhh--H-HHHHHHHHHHHHhcCCCccccHHHHHHHhcccc--CCC
Q psy9768 289 AVKGGQINQLSDAMTKH-----QTFFIKCGIYLILEKL--K-MITYRNFYNIHKDINKNSVVELQQFLQALHYVE--GKH 358 (406)
Q Consensus 289 aik~Gnl~~f~~~l~~~-----~~~f~~~glyl~lerl--r-~lv~rnL~kkv~~~~~~~~i~l~~~~~al~~~~--~~~ 358 (406)
-+..||+....++++.. ...|++..+-..+|+- + .-..-.|++..+ ....|+-+.|..++.-.- .+|
T Consensus 19 Y~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~---~~~~is~~q~~~Gf~~vl~~ldD 95 (152)
T 2ion_A 19 YLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLW---KSSTITIDQMKRGYERIYNEIPD 95 (152)
T ss_dssp HHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH---HTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH---HCCCcCHHHHHHHHHHHHHhChH
Confidence 34669999999999864 3689999998899863 1 122334444433 356789999988885321 011
Q ss_pred ------CCHHHHHHHHHHHHHcCcee
Q psy9768 359 ------IDLEDTHCLLCNLIHDGQLK 378 (406)
Q Consensus 359 ------~~~devEcilanLI~~g~Ik 378 (406)
--.+-+..+++.+|.+|.|.
T Consensus 96 l~lDiP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 96 INLDVPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp HHHHSTTHHHHHHHHHHHHHHTTCSC
T ss_pred hccCccchHHHHHHHHHHHHHCCCCC
Confidence 12355778889999988773
No 207
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=23.39 E-value=2.2e+02 Score=24.55 Aligned_cols=58 Identities=12% Similarity=-0.002 Sum_probs=39.1
Q ss_pred HHHHHHHh----cCChhhHHHHHHH-hccCCCCCCCCcchhhHHhhhhhhhhhh----hccHHHHHHHHHHHHHHhc
Q psy9768 178 QLFKVYFR----ISKLHLMKPLIRA-IESSQYKDKSSLSQQITYKYYVGRKAMF----DSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 178 ~l~kiYfk----l~~~~l~~~~~~~-i~~~~~~~~~~~~~~vty~YY~Gr~~~~----~~~~~~A~~~L~~A~~~c~ 245 (406)
.+-.+|.+ .++++.+...++. ++.. ...-.|.+|.++.. .+++.+|.+++..|...-|
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK----------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 34455666 7788777666644 3321 12445778888888 8888888888888887644
No 208
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=23.07 E-value=64 Score=23.19 Aligned_cols=31 Identities=35% Similarity=0.785 Sum_probs=23.4
Q ss_pred hhhhcCCCCCCcccchhcHHH-HHHHHHHHHHhcCC
Q psy9768 154 RICTSDNRTSENDSKKWGMLP-FVNQLFKVYFRISK 188 (406)
Q Consensus 154 ~~c~~D~~~~~~~sKk~g~~~-l~n~l~kiYfkl~~ 188 (406)
..|.+|.- .+-|||+|. +.-.|+|-|.|+..
T Consensus 10 eicktdgi----pnikwgmyiafgekllksylkmka 41 (82)
T 3fbl_A 10 EICKTDGI----PNIKWGMYIAFGEKLLKSYLKMKA 41 (82)
T ss_dssp HHHHHTTC----CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCC----CcchhHHHHHHHHHHHHHHHHHhc
Confidence 36888865 457999875 56789999998753
No 209
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=22.88 E-value=87 Score=32.53 Aligned_cols=30 Identities=13% Similarity=-0.004 Sum_probs=17.4
Q ss_pred HhhhhhhhhhhhccHHHHHHHHHHHHHHhc
Q psy9768 216 YKYYVGRKAMFDSDYKTANEYLTFAFQRCH 245 (406)
Q Consensus 216 y~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~ 245 (406)
.+|.+|++++..+++.+|.+++..|+..-|
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 345566666666666666666665555444
No 210
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=21.35 E-value=54 Score=20.21 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhhhc
Q psy9768 142 LETTTEMLMTCFRICTS 158 (406)
Q Consensus 142 le~~a~~i~~~F~~c~~ 158 (406)
-|.||.+|+++|+.=+.
T Consensus 5 Ee~aA~vIQrA~R~yl~ 21 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLL 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46799999999996443
No 211
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=20.75 E-value=1.4e+02 Score=21.07 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=29.6
Q ss_pred ccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeE
Q psy9768 340 SVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKG 379 (406)
Q Consensus 340 ~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkG 379 (406)
..++...++..+. ++...|..++..|..+|+|..
T Consensus 24 ~~~s~~eLA~~lg------lsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQ------VPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHC------SCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHC------cCHHHHHHHHHHHHHCCcEec
Confidence 4699999999984 578999999999999999853
No 212
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=20.55 E-value=91 Score=28.09 Aligned_cols=72 Identities=8% Similarity=-0.061 Sum_probs=0.0
Q ss_pred HHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Q psy9768 181 KVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYL 259 (406)
Q Consensus 181 kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~A~~~c~~~~~~nk~~IL~yL 259 (406)
..+.+.|+++-+...++..-...+.+ ...++-+|++++..|++.+|.+.|..+...-|......-..-+.+.
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQN-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcc-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
No 213
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=20.26 E-value=1.4e+02 Score=24.22 Aligned_cols=36 Identities=14% Similarity=0.209 Sum_probs=31.8
Q ss_pred CccccHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCceeEE
Q psy9768 339 NSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGY 380 (406)
Q Consensus 339 ~~~i~l~~~~~al~~~~~~~~~~devEcilanLI~~g~IkGy 380 (406)
..+++...+...+. ++...+-..+..|..+|+|+++
T Consensus 17 ~~~~s~~ela~~lg------~s~~tv~~~l~~L~~~G~i~~~ 52 (144)
T 2cfx_A 17 DSRLSMRELGRKIK------LSPPSVTERVRQLESFGIIKQY 52 (144)
T ss_dssp CSCCCHHHHHHHHT------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCCHHHHHHHHC------cCHHHHHHHHHHHHHCCCeEEE
Confidence 36799999999984 5778999999999999999987
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=20.17 E-value=1.2e+02 Score=26.30 Aligned_cols=48 Identities=10% Similarity=0.042 Sum_probs=38.6
Q ss_pred HHHHHhcCChhhHHHHHHHhccCCCCCCCCcchhhHHhhhhhhhhhhhccHHHHHHHHHH
Q psy9768 180 FKVYFRISKLHLMKPLIRAIESSQYKDKSSLSQQITYKYYVGRKAMFDSDYKTANEYLTF 239 (406)
Q Consensus 180 ~kiYfkl~~~~l~~~~~~~i~~~~~~~~~~~~~~vty~YY~Gr~~~~~~~~~~A~~~L~~ 239 (406)
|.+-.++|+++.|..+.+.+++. .-.--+|..++-+|++.-|+++++.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~~~------------~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLNDS------------ITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHCCH------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhCCH------------HHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77788999999999998877542 2345689999999999999985543
No 215
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=20.02 E-value=72 Score=19.89 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=14.6
Q ss_pred HHHHHHHHH-HHHHHhcCCCCCh
Q psy9768 251 NKRLILIYL-VPVKMLLGFMPTR 272 (406)
Q Consensus 251 nk~~IL~yL-Ip~~lllG~~P~~ 272 (406)
.|++.|+|| .|++++...+.+.
T Consensus 3 ~r~LALKYLLTPv~~l~a~~Ssr 25 (36)
T 3bua_E 3 FRGLALKYLLTPVNFFQAGYSSR 25 (36)
T ss_pred hHHHHHHHHhhhHHHHhcccchh
Confidence 467888886 4777776555443
Done!