RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9768
         (406 letters)



>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 246

 Score = 28.6 bits (63), Expect = 1.2
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 219 YVGRKAMFDSDYKTANEYLTFAFQRCHKSSKKNKRLILIYLVPVKMLLGFMPTRELLDKY 278
             G  +   S Y+    +L            +   + + Y+    + + F  + + L++Y
Sbjct: 17  SKGYDSFTSSKYEEGATWLLECL--------RKGGVDIDYMPAHTVQIAFPESIDELNRY 68

Query: 279 DLLQLWDV 286
           D++ + D+
Sbjct: 69  DVIVISDI 76


>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
           [TaxId: 562]}
          Length = 247

 Score = 27.2 bits (59), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 159 DNRTSENDSKKWGMLPFVNQLFKVYFRI 186
           DNR +  DS+ WG +P  N + +     
Sbjct: 197 DNRDNSADSRYWGFVPEANLVGRATAIW 224


>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium
           falciparum) [TaxId: 5833]}
          Length = 286

 Score = 27.2 bits (59), Expect = 3.3
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 305 HQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVE-LQQFLQALHYVEGKHIDLED 363
           +     K  + L+ E L     +        +   +    L Q L  + Y   + +   D
Sbjct: 66  YDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRD 125

Query: 364 THCLLCNLIHDGQLK 378
                  +  +G+LK
Sbjct: 126 LKPQNLLINREGELK 140


>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone
          synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]}
          Length = 160

 Score = 25.7 bits (56), Expect = 7.2
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 52 LEHPIFELVSA 62
          +E PIFE+VS 
Sbjct: 2  VERPIFEIVST 12


>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1
           (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 343

 Score = 26.1 bits (57), Expect = 8.2
 Identities = 16/134 (11%), Positives = 49/134 (36%), Gaps = 2/134 (1%)

Query: 268 FMPTRELLDKYDLLQLWDVTVAVKGGQINQLSDAMTK--HQTFFIKCGIYLILEKLKMIT 325
           F P  + L     + L    + +    I    +   +   ++  ++ G++ +L++L+ I 
Sbjct: 154 FQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIE 213

Query: 326 YRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDTHCLLCNLIHDGQLKGYISLAH 385
             +        ++    +       L  +  +  D  +   ++ N + D + + +     
Sbjct: 214 NEDMKVQLCVFDEQGDEDFFDLKGRLDDIRMEMDDFGEVFQIILNTVKDSKAEPHFLSIL 273

Query: 386 QKVVLSKTDPFPKL 399
           Q ++L + D   + 
Sbjct: 274 QHLLLVRNDYEARP 287


>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 293

 Score = 25.7 bits (56), Expect = 9.5
 Identities = 11/74 (14%), Positives = 27/74 (36%)

Query: 305 HQTFFIKCGIYLILEKLKMITYRNFYNIHKDINKNSVVELQQFLQALHYVEGKHIDLEDT 364
             ++ +   +++++E L   +  +                ++ LQAL ++    +   D 
Sbjct: 83  LDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDI 142

Query: 365 HCLLCNLIHDGQLK 378
                 L  DG +K
Sbjct: 143 KSDNILLGMDGSVK 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,446,003
Number of extensions: 64641
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 13
Length of query: 406
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,213,086
Effective search space: 386974434
Effective search space used: 386974434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)