BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9769
(1026 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 201 bits (510), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 124/156 (79%), Gaps = 5/156 (3%)
Query: 309 RTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKV 368
RT+ R P+ +PK+M+VVGGQAPKAIRSVECYDFK ERW VAE+P+RRCRAG+V++ V
Sbjct: 5 RTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLV 64
Query: 369 YAVGGFNGSLRV-----YDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLN 423
+AVGGFNGSLRV YDP ++W+S M RRSTLG AVLN L+YAVGGFDGS+GL+
Sbjct: 65 FAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLS 124
Query: 424 SAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
S E Y+ + +W +APM+TRRSSVGVGV+ G LYA
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYA 160
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/104 (60%), Positives = 74/104 (71%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGGYD SRQCLS+VE Y+ N W + +M +RSGAGVGVL+N+LYAVGGHDGPLVRK
Sbjct: 161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRK 220
Query: 837 SVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSC 880
SVE YDP T W V DM +CRRNA + +V V GD+ SC
Sbjct: 221 SVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 85/143 (59%), Gaps = 9/143 (6%)
Query: 321 VMLVVGG---QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG- 376
++ VGG + + + +VECY+ T W +AEM TRR AG+ L+ +YAVGG +G
Sbjct: 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGP 216
Query: 377 ----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPST 432
S+ VYDP+TN W M R GV +N L+Y VGG DGS L S E Y+P+T
Sbjct: 217 LVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTT 276
Query: 433 EKWNMIAP-MSTRRSSVGVGVLN 454
+KW +++ MST RS GV V++
Sbjct: 277 DKWTVVSSCMSTGRSYAGVTVID 299
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 321 VMLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN---- 375
++ VGG + SVE Y+ K+ W VA M TRR G+ + +YAVGG++
Sbjct: 110 LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR 169
Query: 376 ---GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPST 432
++ Y+ +TNEW+ M RRS GV VLN+L+YAVGG DG S EVYDP+T
Sbjct: 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTT 229
Query: 433 EKWNMIAPMSTRRSSVGVGVLNGCLYAENLD 463
W +A M+ R + GV +NG LY D
Sbjct: 230 NAWRQVADMNMCRRNAGVCAVNGLLYVVGGD 260
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 16/108 (14%)
Query: 761 FKREKSSRNAELST--------------IGVGGYDGISRQCLSSVEMYSPERNTWEPVKD 806
FK E+ + AEL + VGG++G R + +V+ Y P ++ W V +
Sbjct: 37 FKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR--VRTVDSYDPVKDQWTSVAN 94
Query: 807 MLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDM 854
M +RS G VL+ +LYAVGG DG SVEAY+ ++ W V M
Sbjct: 95 MRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPM 142
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 782 GISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAY 841
G + + + SVE Y + W V ++ +R AG+ + +++AVGG +G L ++V++Y
Sbjct: 23 GQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSY 82
Query: 842 DPETQTWSGVPDM 854
DP W+ V +M
Sbjct: 83 DPVKDQWTSVANM 95
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 777 VGGYDGISRQC-LSSVEMYSPERNTWEPVKD-MLYKRSGAGVGVLDNIL 823
VGG DG C L+SVE Y+P + W V M RS AGV V+D L
Sbjct: 257 VGGDDG---SCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 129 bits (323), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 136/237 (57%), Gaps = 7/237 (2%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQE--- 104
H ++ ++ R+++ CD L+ DG E+ K +LAA SPY +++ K +
Sbjct: 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGST 72
Query: 105 -RIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLH 163
+I L+G+ + ++DY++S +I + E+ +Q ++ AA+LL LTD++ CC+FL+ +
Sbjct: 73 YKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA 132
Query: 164 PTNCLGIRAFADLHSCLDLLS-TAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKLMV 222
NC+GIR FA LH CL + A Y+E HF ++ EEFL LS +++ +IS +KL V
Sbjct: 133 AENCIGIRDFA-LHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNV 191
Query: 223 SNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKNDIR 279
NE VFE VI W+ +D E R+ H ++ + + L YL ++ E + + ++
Sbjct: 192 GNERYVFEAVIRWIAHDTEIRKVHXKDVXSALWVSGLDSSYLREQXLNEPLVREIVK 248
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 139/256 (54%), Gaps = 10/256 (3%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLI---ADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQ 103
H S+ N R+Q L CD+ L A G E AH+ VLAA + YF + F ES+
Sbjct: 33 HCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRS 92
Query: 104 ERIVLK------GVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDF 157
R+ ++ G +P+ ++ +I+Y+Y+ I V+ +V +L A+ L +++ C +F
Sbjct: 93 GRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEF 152
Query: 158 LQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISS 217
L+ +LH +NC+ I + A +++ L A + I +F ++++ EEF +L + +S
Sbjct: 153 LKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSD 212
Query: 218 DKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKND 277
++ V +EE +FE V+ WV + E R+++ EL + +RL + YL + V+ E + N+
Sbjct: 213 LEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANN 272
Query: 278 IRCKDYLIEALKYHIL 293
C + +A++ H L
Sbjct: 273 EVCVKLVADAVERHAL 288
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 135/256 (52%), Gaps = 10/256 (3%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLI---ADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQ 103
H S+ N R+Q L CD+ L A G E AH+ VLAA + YF + F ES+
Sbjct: 15 HCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRS 74
Query: 104 ERIVLK------GVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDF 157
R+ + G +P+ ++ +I+Y Y+ I V+ +V +L A+ L +++ C +F
Sbjct: 75 GRVEXRKWSSEPGPEPDTVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEF 134
Query: 158 LQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISS 217
L+ +LH +NC+ I + A ++ L A + I +F ++++ EEF +L + +S
Sbjct: 135 LKKKLHLSNCVAIHSLAHXYTLSQLALKAADXIRRNFHKVIQDEEFYTLPFHLIRDWLSD 194
Query: 218 DKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKND 277
++ V +EE +FE V+ WV + E R+++ EL + +RL YL + V+ E + N+
Sbjct: 195 LEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQXKPTYLTRHVKPERLVANN 254
Query: 278 IRCKDYLIEALKYHIL 293
C + +A++ H L
Sbjct: 255 EVCVKLVADAVERHAL 270
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 122 bits (305), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWS 389
+++CY+ T +W A M R R G+ + +YAVGG +G S+ Y+P +EW
Sbjct: 92 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 151
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
PM RR +GVAVLN L+YAVGGFDG++ LNSAE Y P +W MI M+T RS G
Sbjct: 152 LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAG 211
Query: 450 VGVLNGCLYA 459
V VL+ C+YA
Sbjct: 212 VCVLHNCIYA 221
Score = 117 bits (292), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 307 TPRTKPRQPLRVPKVMLVVG---------GQAPKAIR--SVECYDFKTERWQSVAEMPTR 355
T + P P+ VP+ + VG G + I SVE Y+ + + W VA M TR
Sbjct: 100 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR 159
Query: 356 RCRAGLVFLHEKVYAVGGFNGSLRV-----YDPSTNEWSSAPPMEARRSTLGVAVLNSLI 410
R G+ L+ +YAVGGF+G+ R+ Y P NEW M RS GV VL++ I
Sbjct: 160 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCI 219
Query: 411 YAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
YA GG+DG LNS E YD TE W +APM RRS++G+ V G +Y
Sbjct: 220 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIY 267
Score = 110 bits (274), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 320 KVMLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-- 376
+++ VGG + S ECY + W+ + M T R AG+ LH +YA GG++G
Sbjct: 170 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD 229
Query: 377 ---SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
S+ YD T W+ PM+ RRS LG+ V IY +GG+DG + L+S E YDP T+
Sbjct: 230 QLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 289
Query: 434 KWNMIAPMSTRRSSVGVGV 452
W+ + M++ RS VGV V
Sbjct: 290 TWSEVTRMTSGRSGVGVAV 308
Score = 105 bits (261), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%)
Query: 308 PRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEK 367
PR P +V +++ GG +++ +E Y+ W +A++ R +
Sbjct: 15 PRGSHMAP-KVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGL 73
Query: 368 VYAVGGFNGS---------LRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDG 418
+YAVGG N S L Y+P TN+WS PM R+ +GV V++ IYAVGG G
Sbjct: 74 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 133
Query: 419 SSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
NS E Y+P ++W+++APM TRR VGV VLN LYA
Sbjct: 134 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA 174
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 776 GVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVR 835
VGG+DG +R L+S E Y PERN W + M RSGAGV VL N +YA GG+DG
Sbjct: 174 AVGGFDGTNR--LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQL 231
Query: 836 KSVEAYDPETQTWSGVPDMALCRRNAV 862
SVE YD ET+TW+ V M RR+A+
Sbjct: 232 NSVERYDVETETWTFVAPMKH-RRSAL 257
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 719 LLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQ-NCSRPSFK--REKSSRNAELSTI 775
+L R+ G V ++++ + ++ GT +N C P R ++ N S
Sbjct: 156 MLTRRIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA 210
Query: 776 GV----------GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYA 825
GV GGYDG + L+SVE Y E TW V M ++RS G+ V +Y
Sbjct: 211 GVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 268
Query: 826 VGGHDGPLVRKSVEAYDPETQTWSGVPDMALCR 858
+GG+DG SVE YDP+T TWS V M R
Sbjct: 269 LGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 301
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 775 IGVGGYDGI------SRQCL--SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAV 826
IGVG DG S C+ +SVE Y PER+ W V ML +R G GV VL+ +LYAV
Sbjct: 116 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 175
Query: 827 GGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
GG DG S E Y PE W + M R A
Sbjct: 176 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA 210
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTW 848
S+++ Y+P N W P M R+ GVGV+D +YAVGG G + SVE Y+PE W
Sbjct: 91 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 150
Query: 849 SGVPDMALCRRNAV 862
V M L RR V
Sbjct: 151 HLVAPM-LTRRIGV 163
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 778 GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH----DGPL 833
GGY RQ LS +E Y+P TW + D+ RSG V+ +LYAVGG DG
Sbjct: 32 GGY---FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNT 88
Query: 834 VRKSVEAYDPETQTWSGVPDMALCR 858
+++ Y+P T WS M++ R
Sbjct: 89 DSSALDCYNPMTNQWSPCAPMSVPR 113
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V M RSG GV V
Sbjct: 269 LGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 308
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 122 bits (305), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWS 389
+++CY+ T +W A M R R G+ + +YAVGG +G S+ Y+P +EW
Sbjct: 91 ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 150
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
PM RR +GVAVLN L+YAVGGFDG++ LNSAE Y P +W MI M+T RS G
Sbjct: 151 LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAG 210
Query: 450 VGVLNGCLYA 459
V VL+ C+YA
Sbjct: 211 VCVLHNCIYA 220
Score = 117 bits (292), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/168 (40%), Positives = 90/168 (53%), Gaps = 16/168 (9%)
Query: 307 TPRTKPRQPLRVPKVMLVVG---------GQAPKAIR--SVECYDFKTERWQSVAEMPTR 355
T + P P+ VP+ + VG G + I SVE Y+ + + W VA M TR
Sbjct: 99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR 158
Query: 356 RCRAGLVFLHEKVYAVGGFNGSLRV-----YDPSTNEWSSAPPMEARRSTLGVAVLNSLI 410
R G+ L+ +YAVGGF+G+ R+ Y P NEW M RS GV VL++ I
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCI 218
Query: 411 YAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
YA GG+DG LNS E YD TE W +APM RRS++G+ V G +Y
Sbjct: 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIY 266
Score = 110 bits (274), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 320 KVMLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-- 376
+++ VGG + S ECY + W+ + M T R AG+ LH +YA GG++G
Sbjct: 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD 228
Query: 377 ---SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
S+ YD T W+ PM+ RRS LG+ V IY +GG+DG + L+S E YDP T+
Sbjct: 229 QLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288
Query: 434 KWNMIAPMSTRRSSVGVGV 452
W+ + M++ RS VGV V
Sbjct: 289 TWSEVTRMTSGRSGVGVAV 307
Score = 103 bits (257), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 9/152 (5%)
Query: 317 RVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG 376
+V +++ GG +++ +E Y+ W +A++ R + +YAVGG N
Sbjct: 22 KVGRLIYTAGGYFRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 81
Query: 377 S---------LRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEV 427
S L Y+P TN+WS PM R+ +GV V++ IYAVGG G NS E
Sbjct: 82 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER 141
Query: 428 YDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
Y+P ++W+++APM TRR VGV VLN LYA
Sbjct: 142 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA 173
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 776 GVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVR 835
VGG+DG +R L+S E Y PERN W + M RSGAGV VL N +YA GG+DG
Sbjct: 173 AVGGFDGTNR--LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQL 230
Query: 836 KSVEAYDPETQTWSGVPDMALCRRNAV 862
SVE YD ET+TW+ V M RR+A+
Sbjct: 231 NSVERYDVETETWTFVAPMKH-RRSAL 256
Score = 72.0 bits (175), Expect = 2e-12, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 719 LLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQ-NCSRPSFK--REKSSRNAELSTI 775
+L R+ G V ++++ + ++ GT +N C P R ++ N S
Sbjct: 155 MLTRRIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA 209
Query: 776 GV----------GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYA 825
GV GGYDG + L+SVE Y E TW V M ++RS G+ V +Y
Sbjct: 210 GVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYV 267
Query: 826 VGGHDGPLVRKSVEAYDPETQTWSGVPDMALCR 858
+GG+DG SVE YDP+T TWS V M R
Sbjct: 268 LGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 300
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 775 IGVGGYDGI------SRQCL--SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAV 826
IGVG DG S C+ +SVE Y PER+ W V ML +R G GV VL+ +LYAV
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 174
Query: 827 GGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
GG DG S E Y PE W + M R A
Sbjct: 175 GGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGA 209
Score = 60.8 bits (146), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTW 848
S+++ Y+P N W P M R+ GVGV+D +YAVGG G + SVE Y+PE W
Sbjct: 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149
Query: 849 SGVPDMALCRRNAV 862
V M L RR V
Sbjct: 150 HLVAPM-LTRRIGV 162
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 778 GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH----DGPL 833
GGY RQ LS +E Y+P TW + D+ RSG V+ +LYAVGG DG
Sbjct: 31 GGY---FRQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNT 87
Query: 834 VRKSVEAYDPETQTWSGVPDMALCR 858
+++ Y+P T WS M++ R
Sbjct: 88 DSSALDCYNPMTNQWSPCAPMSVPR 112
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V M RSG GV V
Sbjct: 268 LGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 5/130 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWS 389
+++CY+ T +W A M R R G+ + +YAVGG +G S+ Y+P +EW
Sbjct: 85 ALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWH 144
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
PM RR +GVAVLN L+YAVGGFDG++ LNSAE Y P +W MI PM+T RS G
Sbjct: 145 LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAG 204
Query: 450 VGVLNGCLYA 459
V VL+ C+YA
Sbjct: 205 VCVLHNCIYA 214
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRV-----YDPSTNEWS 389
SVE Y+ + + W VA M TRR G+ L+ +YAVGGF+G+ R+ Y P NEW
Sbjct: 132 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 191
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
PM RS GV VL++ IYA GG+DG LNS E YD TE W +APM RS++G
Sbjct: 192 MITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALG 251
Query: 450 VGVLNGCLY 458
+ V G +Y
Sbjct: 252 ITVHQGKIY 260
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 320 KVMLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-- 376
+++ VGG + S ECY + W+ + M T R AG+ LH +YA GG++G
Sbjct: 163 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQD 222
Query: 377 ---SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
S+ YD T W+ PM RS LG+ V IY +GG+DG + L+S E YDP ++
Sbjct: 223 QLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSD 282
Query: 434 KWNMIAPMSTRRSSVGVGV 452
W+ + M++ RS VGV V
Sbjct: 283 TWSEVTRMTSGRSGVGVAV 301
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 311 KPRQ--PLRVPKV---MLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLH 365
KP Q P R PKV + GG +++ +E Y+ W +A++ R +
Sbjct: 5 KPTQAVPCRAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVG 64
Query: 366 EKVYAVGGFNGS---------LRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGF 416
+YAVGG N S L Y+P TN+WS M R+ +GV V++ IYAVGG
Sbjct: 65 GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGS 124
Query: 417 DGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
G +S E Y+P ++W+++APM TRR VGV VLN LYA
Sbjct: 125 HGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA 167
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+DG +R L+S E Y PERN W + M RSGAGV VL N +YA GG+DG
Sbjct: 168 VGGFDGTNR--LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 225
Query: 837 SVEAYDPETQTWSGVPDM 854
SVE YD ET+TW+ V M
Sbjct: 226 SVERYDVETETWTFVAPM 243
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 775 IGVGGYDGI------SRQCL--SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAV 826
IGVG DG S C+ SSVE Y PER+ W V ML +R G GV VL+ +LYAV
Sbjct: 109 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 168
Query: 827 GGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
GG DG S E Y PE W + M R A
Sbjct: 169 GGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGA 203
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 719 LLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQ-NCSRPSFK--REKSSRNAELSTI 775
+L R+ G V ++++ + ++ GT +N C P R + N S
Sbjct: 149 MLTRRIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGA 203
Query: 776 GV----------GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYA 825
GV GGYDG + L+SVE Y E TW V M + RS G+ V +Y
Sbjct: 204 GVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYV 261
Query: 826 VGGHDGPLVRKSVEAYDPETQTWSGVPDMALCR 858
+GG+DG SVE YDP++ TWS V M R
Sbjct: 262 LGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGR 294
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTW 848
S+++ Y+P N W P M R+ GVGV+D +YAVGG G + SVE Y+PE W
Sbjct: 84 SALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEW 143
Query: 849 SGVPDMALCRRNAV 862
V M L RR V
Sbjct: 144 HLVAPM-LTRRIGV 156
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 782 GISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH----DGPLVRKS 837
G RQ LS +E Y+P +W + D+ RSG V+ +LYAVGG DG +
Sbjct: 26 GYFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA 85
Query: 838 VEAYDPETQTWSGVPDMALCR 858
++ Y+P T WS M++ R
Sbjct: 86 LDCYNPMTNQWSPCASMSVPR 106
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V M RSG GV V
Sbjct: 262 LGGYDG--HTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 301
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 120 bits (300), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 5/130 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWS 389
+++CY+ T +W A M R R G+ + +YAVGG +G S+ Y+P +EW
Sbjct: 84 ALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWH 143
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
PM RR +GVAVLN L+YAVGGFDG++ LNSAE Y P +W MI PM+T RS G
Sbjct: 144 LVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAG 203
Query: 450 VGVLNGCLYA 459
V VL+ C+YA
Sbjct: 204 VCVLHNCIYA 213
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 76/129 (58%), Gaps = 5/129 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRV-----YDPSTNEWS 389
SVE Y+ + + W VA M TRR G+ L+ +YAVGGF+G+ R+ Y P NEW
Sbjct: 131 SVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWR 190
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
PM RS GV VL++ IYA GG+DG LNS E YD TE W +APM RS++G
Sbjct: 191 MITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALG 250
Query: 450 VGVLNGCLY 458
+ V G +Y
Sbjct: 251 ITVHQGKIY 259
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 320 KVMLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-- 376
+++ VGG + S ECY + W+ + M T R AG+ LH +YA GG++G
Sbjct: 162 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQD 221
Query: 377 ---SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
S+ YD T W+ PM RS LG+ V IY +GG+DG + L+S E YDP ++
Sbjct: 222 QLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSD 281
Query: 434 KWNMIAPMSTRRSSVGVGV 452
W+ + M++ RS VGV V
Sbjct: 282 TWSEVTRMTSGRSGVGVAV 300
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+DG +R L+S E Y PERN W + M RSGAGV VL N +YA GG+DG
Sbjct: 167 VGGFDGTNR--LNSAECYYPERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 224
Query: 837 SVEAYDPETQTWSGVPDM 854
SVE YD ET+TW+ V M
Sbjct: 225 SVERYDVETETWTFVAPM 242
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 775 IGVGGYDGI------SRQCL--SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAV 826
IGVG DG S C+ SSVE Y PER+ W V ML +R G GV VL+ +LYAV
Sbjct: 108 IGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAV 167
Query: 827 GGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
GG DG S E Y PE W + M R A
Sbjct: 168 GGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGA 202
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 719 LLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQ-NCSRPSFK--REKSSRNAELSTI 775
+L R+ G V ++++ + ++ GT +N C P R + N S
Sbjct: 148 MLTRRIG-----VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGA 202
Query: 776 GV----------GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYA 825
GV GGYDG + L+SVE Y E TW V M + RS G+ V +Y
Sbjct: 203 GVCVLHNCIYAAGGYDGQDQ--LNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYV 260
Query: 826 VGGHDGPLVRKSVEAYDPETQTWSGVPDMALCR 858
+GG+DG SVE YDP++ TWS V M R
Sbjct: 261 LGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGR 293
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTW 848
S+++ Y+P N W P M R+ GVGV+D +YAVGG G + SVE Y+PE W
Sbjct: 83 SALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEW 142
Query: 849 SGVPDMALCRRNAV 862
V M L RR V
Sbjct: 143 HLVAPM-LTRRIGV 155
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 782 GISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH----DGPLVRKS 837
G RQ LS +E Y+P +W + D+ RSG V+ +LYAVGG DG +
Sbjct: 25 GYFRQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSA 84
Query: 838 VEAYDPETQTWSGVPDMALCR 858
++ Y+P T WS M++ R
Sbjct: 85 LDCYNPMTNQWSPCASMSVPR 105
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V M RSG GV V
Sbjct: 261 LGGYDG--HTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 300
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 113 bits (282), Expect = 7e-25, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 77/130 (59%), Gaps = 5/130 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWS 389
S+E YD ++W + +M T R AGLV +Y +GG++G S+ YDP T W+
Sbjct: 129 SMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWT 188
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
+ PM +RS GVA+LN IY VGGFDG++ L+S E Y+ T+ W + M+T R VG
Sbjct: 189 NVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG 248
Query: 450 VGVLNGCLYA 459
VL G LYA
Sbjct: 249 ATVLRGRLYA 258
Score = 109 bits (273), Expect = 6e-24, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 90/166 (54%), Gaps = 16/166 (9%)
Query: 305 VRTPRTKPRQPLRVPKVMLVVGG----QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAG 360
++ PRT+ R L +V+LVVGG Q+P I VE YD KT+ W + + +R
Sbjct: 2 MQGPRTRAR--LGANEVLLVVGGFGSQQSP--IDVVEKYDPKTQEWSFLPSITRKRRYVA 57
Query: 361 LVFLHEKVYAVGGFNG-----SLRVYDPSTNE---WSSAPPMEARRSTLGVAVLNSLIYA 412
V LH+++Y +GG++G S+ D + +E W S PM RR G L +IY
Sbjct: 58 SVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Query: 413 VGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
GGFDGS S E YDP+ ++W+M+ M T R G+ V +G +Y
Sbjct: 118 SGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIY 163
Score = 102 bits (255), Expect = 9e-22, Method: Composition-based stats.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNE 387
+ SVE YD T W +V M T+R AG+ L++ +Y VGGF+G S+ Y+ T+
Sbjct: 174 LNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233
Query: 388 WSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSS 447
W++ M R +G VL +YA+ G+DG+S L+S E YDP + W ++ M T+R
Sbjct: 234 WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCD 293
Query: 448 VGVGVL 453
GV VL
Sbjct: 294 AGVCVL 299
Score = 73.9 bits (180), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
+GGYDG++ L+SVE Y P W V M KRSGAGV +L++ +Y VGG DG
Sbjct: 165 LGGYDGLN--ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLS 222
Query: 837 SVEAYDPETQTWSGVPDMALCR 858
SVEAY+ T +W+ V M R
Sbjct: 223 SVEAYNIRTDSWTTVTSMTTPR 244
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 778 GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKS 837
GG+DG R +S+E Y P + W + DM R GAG+ V ++Y +GG+DG + S
Sbjct: 119 GGFDGSRRH--TSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS 176
Query: 838 VEAYDPETQTWSGVPDMALCRRNA 861
VE YDP T W+ V MA R A
Sbjct: 177 VEKYDPHTGHWTNVTPMATKRSGA 200
Score = 63.5 bits (153), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 297 GEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRR 356
G +T + T R+ L + +V G + SVE Y+ +T+ W +V M T R
Sbjct: 185 GHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPR 244
Query: 357 CRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWSSAPPMEARRSTLGVAVL 406
C G L ++YA+ G++G S+ YDP + W M +R GV VL
Sbjct: 245 CYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+DG + LSSVE Y+ ++W V M R G VL LYA+ G+DG +
Sbjct: 212 VGGFDGTAH--LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS 269
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
S+E YDP +W V M R +A
Sbjct: 270 SIECYDPIIDSWEVVTSMGTQRCDA 294
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 777 VGGYDGISRQCLSSVEMY---SPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPL 833
+GGYDG SR LSSVE + E W V M +R AG L +++Y GG DG
Sbjct: 68 IGGYDGRSR--LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR 125
Query: 834 VRKSVEAYDPETQTWSGVPDMALCRRNAVL 863
S+E YDP WS + DM R A L
Sbjct: 126 RHTSMERYDPNIDQWSMLGDMQTAREGAGL 155
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 302 LTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGL 361
+T + TPR + ++ + G + S+ECYD + W+ V M T+RC AG+
Sbjct: 237 VTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGV 296
Query: 362 VFLHE 366
L E
Sbjct: 297 CVLRE 301
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 776 GVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVL 819
+ GYDG S LSS+E Y P ++WE V M +R AGV VL
Sbjct: 258 AIAGYDGNS--LLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 763 REKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNI 822
R ++ A + VGG+ G + + VE Y P+ W + + KR L +
Sbjct: 6 RTRARLGANEVLLVVGGF-GSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR 64
Query: 823 LYAVGGHDGPLVRKSVEAYD---PETQTWSGVPDMALCR 858
+Y +GG+DG SVE D E W V M + R
Sbjct: 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRR 103
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 398 RSTLGVAVLNSLIYAVGGFDGS-SGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGC 456
R+ LG N ++ VGGF S ++ E YDP T++W+ + ++ +R V L+
Sbjct: 8 RARLGA---NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDR 64
Query: 457 LYA-ENLDGR 465
+Y DGR
Sbjct: 65 IYVIGGYDGR 74
Score = 33.5 bits (75), Expect = 0.68, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 811 RSGAGVGVLDNILYAVGG---HDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVA 867
R+ A +G + +L VGG P+ VE YDP+TQ WS +P + RR
Sbjct: 6 RTRARLGA-NEVLLVVGGFGSQQSPI--DVVEKYDPKTQEWSFLPSITRKRR-------- 54
Query: 868 STAEVNLGDEVSCVVKGISVRGVIAQV 894
A V+L D + V+ G R ++ V
Sbjct: 55 YVASVSLHDRIY-VIGGYDGRSRLSSV 80
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 111 bits (277), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 76/130 (58%), Gaps = 5/130 (3%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWS 389
+++CY+ T +W A R R G+ + +YAVGG +G S+ Y+P +EW
Sbjct: 91 ALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWH 150
Query: 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
P RR +GVAVLN L+YAVGGFDG++ LNSAE Y P +W I +T RS G
Sbjct: 151 LVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAG 210
Query: 450 VGVLNGCLYA 459
V VL+ C+YA
Sbjct: 211 VCVLHNCIYA 220
Score = 108 bits (269), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/168 (38%), Positives = 86/168 (51%), Gaps = 16/168 (9%)
Query: 307 TPRTKPRQPLRVPKVMLVVG---------GQAPKAIR--SVECYDFKTERWQSVAEMPTR 355
T + P P VP+ + VG G + I SVE Y+ + + W VA TR
Sbjct: 99 TNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTR 158
Query: 356 RCRAGLVFLHEKVYAVGGFNGSLRV-----YDPSTNEWSSAPPMEARRSTLGVAVLNSLI 410
R G+ L+ +YAVGGF+G+ R+ Y P NEW RS GV VL++ I
Sbjct: 159 RIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCI 218
Query: 411 YAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
YA GG+DG LNS E YD TE W +AP RRS++G+ V G +Y
Sbjct: 219 YAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIY 266
Score = 102 bits (254), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 320 KVMLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-- 376
+++ VGG + S ECY + W+ + T R AG+ LH +YA GG++G
Sbjct: 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQD 228
Query: 377 ---SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
S+ YD T W+ P + RRS LG+ V IY +GG+DG + L+S E YDP T+
Sbjct: 229 QLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288
Query: 434 KWNMIAPMSTRRSSVGVGV 452
W+ + ++ RS VGV V
Sbjct: 289 TWSEVTRXTSGRSGVGVAV 307
Score = 99.4 bits (246), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 9/152 (5%)
Query: 317 RVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG 376
+V +++ GG +++ +E Y+ W +A++ R + +YAVGG N
Sbjct: 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 81
Query: 377 S---------LRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEV 427
S L Y+P TN+WS P R+ +GV V++ IYAVGG G NS E
Sbjct: 82 SPDGNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER 141
Query: 428 YDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
Y+P ++W+++AP TRR VGV VLN LYA
Sbjct: 142 YEPERDEWHLVAPXLTRRIGVGVAVLNRLLYA 173
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 776 GVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVR 835
VGG+DG +R L+S E Y PERN W + RSGAGV VL N +YA GG+DG
Sbjct: 173 AVGGFDGTNR--LNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQL 230
Query: 836 KSVEAYDPETQTWSGV 851
SVE YD ET+TW+ V
Sbjct: 231 NSVERYDVETETWTFV 246
Score = 67.8 bits (164), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 731 VCISIVKKTIFEDSSVSGTEAVNQ-NCSRPSFK--REKSSRNAELSTIGV---------- 777
V ++++ + ++ GT +N C P R ++ N S GV
Sbjct: 162 VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAA 221
Query: 778 GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKS 837
GGYDG + L+SVE Y E TW V ++RS G+ V +Y +GG+DG S
Sbjct: 222 GGYDGQDQ--LNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDS 279
Query: 838 VEAYDPETQTWSGV 851
VE YDP+T TWS V
Sbjct: 280 VECYDPDTDTWSEV 293
Score = 66.6 bits (161), Expect = 7e-11, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Query: 775 IGVGGYDGI------SRQCL--SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAV 826
IGVG DG S C+ +SVE Y PER+ W V L +R G GV VL+ +LYAV
Sbjct: 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAV 174
Query: 827 GGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
GG DG S E Y PE W + R A
Sbjct: 175 GGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGA 209
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTW 848
S+++ Y+P N W P R+ GVGV+D +YAVGG G + SVE Y+PE W
Sbjct: 90 SALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEW 149
Query: 849 SGVPDMALCRRNAV 862
V L RR V
Sbjct: 150 HLVAP-XLTRRIGV 162
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 778 GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH----DGPL 833
GGY RQ LS +E Y+P TW + D+ RSG V+ +LYAVGG DG
Sbjct: 31 GGY---FRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNT 87
Query: 834 VRKSVEAYDPETQTWS 849
+++ Y+P T WS
Sbjct: 88 DSSALDCYNPXTNQWS 103
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V RSG GV V
Sbjct: 268 LGGYDG--HTFLDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 332 AIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG---------SLRVYD 382
A+ ECYD +TE W + M T+RC G+V + +Y GG G S VYD
Sbjct: 116 ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD 175
Query: 383 PSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS 442
P+T W+ PM R G+ + I+AVGG +G GL++ E YD +W M++PM
Sbjct: 176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP 235
Query: 443 TRRSSVGVGVLNGCLY 458
+ +V + +Y
Sbjct: 236 WKGVTVKCAAVGSIVY 251
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 76/160 (47%), Gaps = 12/160 (7%)
Query: 303 TLVRTPRTKPRQPLRV--PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAG 360
T +R P K R V V+ ++GG I+ ++CY+ + W S PT R
Sbjct: 37 TDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLA 96
Query: 361 LVFLHEKVYAVGGF---NGSLRV---YDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVG 414
K+Y GG N +L + YD T W + P M +R + G+ N LIY G
Sbjct: 97 ACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCG 156
Query: 415 GFDGS--SG--LNSAEVYDPSTEKWNMIAPMSTRRSSVGV 450
G G+ SG LNS EVYDP+TE W + PM R + G+
Sbjct: 157 GSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGL 196
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 331 KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPST 385
+ + S E YD TE W + M R GLVF+ +K++AVGG NG ++ YD
Sbjct: 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKL 225
Query: 386 NEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW 435
NEW PM + T+ A + S++Y + GF G L Y+ T+KW
Sbjct: 226 NEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 781 DGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEA 840
+ +S + L+S E+Y P TW + M+ R G+ + + ++AVGG +G +VE
Sbjct: 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEY 220
Query: 841 YDPETQTWSGVPDM 854
YD + W V M
Sbjct: 221 YDIKLNEWKMVSPM 234
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 13/146 (8%)
Query: 759 PSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
P R+ + A I G + L E Y +W ML +R G+
Sbjct: 88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE 147
Query: 819 LDNILYAVGGHDG----PLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNL 874
+ ++Y GG G V S E YDP T+TW+ + M R+N L V +
Sbjct: 148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGL--------VFV 199
Query: 875 GDEVSCVVKGISVRGVIAQVGYYKLK 900
D++ V G + G + V YY +K
Sbjct: 200 KDKIF-AVGGQNGLGGLDNVEYYDIK 224
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 322 MLVVGGQ-APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRV 380
+ VGGQ + +VE YD K W+ V+ MP + + VY + GF G R+
Sbjct: 203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRL 262
Query: 381 -----YDPSTNEW 388
Y+ T++W
Sbjct: 263 GHILEYNTETDKW 275
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 775 IGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLV 834
VGG +G+ L +VE Y + N W+ V M +K + +I+Y + G G
Sbjct: 204 FAVGGQNGLGG--LDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGR 261
Query: 835 RKSVEAYDPETQTW 848
+ Y+ ET W
Sbjct: 262 LGHILEYNTETDKW 275
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 86.3 bits (212), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 7/155 (4%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQE--- 104
H ++ ++ R+++ CD L+ DG E+ K +LAA SPY +++ K +
Sbjct: 14 HAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGST 72
Query: 105 -RIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLH 163
+I L+G+ + ++DY++S +I + E+ +Q ++ AA+LL LTD++ CC+FL+ +
Sbjct: 73 YKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIA 132
Query: 164 PTNCLGIRAFADLHSCLDLLS-TAENYIELHFAEI 197
NC+GIR FA LH CL + A Y+E HF ++
Sbjct: 133 AENCIGIRDFA-LHYCLHHVHYLATEYLETHFRDV 166
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIV 107
H+S +N R Q LLCDV ++ +G E H+ VLAACS YF +F S Q+ +
Sbjct: 18 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVY 77
Query: 108 -LKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQL 162
+ V AL L+D+ Y+ + V+ NV +L AA LL++ V C D L Q+
Sbjct: 78 EIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLLDRQI 133
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIV 107
H+S +N R Q LLCDV ++ +G E H+ VLAACS YF +F S Q+ +
Sbjct: 8 HSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVY 67
Query: 108 -LKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFL 158
+ V AL L+D+ Y+ + V+ NV +L AA LL++ V C D L
Sbjct: 68 EIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERI 106
H+ E +N R+ LLCD + DGV AHK VLAACS YF +F+ +++ +
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV----DQKDVV 64
Query: 107 VLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDAC 154
L + L +++++Y+ ++ ++ ENV +L A LQ+ D+ AC
Sbjct: 65 HLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC 112
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERI 106
H+ E +N R+ LLCD + DGV AHK VLAACS YF +F+ +++ +
Sbjct: 7 QHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFV----DQKDVV 62
Query: 107 VLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDAC 154
L + L +++++Y+ ++ ++ ENV +L A LQ+ D+ AC
Sbjct: 63 HLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITAC 110
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 10/123 (8%)
Query: 42 PYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEES 101
Y + H++ ++N RK+++LCDV + +G AH+ VLAACS YFH+ + +
Sbjct: 6 AYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADG 65
Query: 102 K-----QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCD 156
+ E + +KG +P LI + Y+ ++ +++ENV + L + ++ ++C
Sbjct: 66 ELNITLPEEVTVKGFEP-----LIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQ 120
Query: 157 FLQ 159
FL+
Sbjct: 121 FLK 123
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 12/150 (8%)
Query: 320 KVMLVVGG--QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGS 377
K+ +V G Q ++ SV CYD +W V +P + ++ + +Y +GG
Sbjct: 111 KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDD 170
Query: 378 LR------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGF--DGSSGLNSAEVYD 429
+ +Y+P +W PM+ RS GVA+ I GG DG S S E +D
Sbjct: 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA--SVEAFD 228
Query: 430 PSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
T KW ++ RSS+ + L G LYA
Sbjct: 229 LKTNKWEVMTEFPQERSSISLVSLAGSLYA 258
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 295 KKGEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPT 354
KKG+ L ++TPR+ + K+++ G SVE +D KT +W+ + E P
Sbjct: 183 KKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ 242
Query: 355 RRCRAGLVFLHEKVYAVGGF 374
R LV L +YA+GGF
Sbjct: 243 ERSSISLVSLAGSLYAIGGF 262
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 22/162 (13%)
Query: 312 PRQPLRVPKVMLVVGGQAPKAIRSVE--CYDFKTERWQSVAEMPTRRCRAGLVFLHEKVY 369
PR + V ++L+V A A +E CY ++AE R + +V +VY
Sbjct: 8 PRHGMFVKDLILLVNDTAAVAYDPMENECY------LTALAEQIPRN-HSSIVTQQNQVY 60
Query: 370 AVGGF-------NGSLRVY----DPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFD- 417
VGG + L+ Y D ++EW PP+ + R G+ ++ IY V G D
Sbjct: 61 VVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDL 120
Query: 418 -GSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
+ L+S YDP KW+ + + + V NG +Y
Sbjct: 121 QTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIY 162
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 331 KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGG-----FNGSLRVYDPST 385
K V Y+ K W+ +A M T R G+ K+ GG + S+ +D T
Sbjct: 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT 231
Query: 386 NEWSSAPPMEARRSTLGVAVLNSLIYAVGGF 416
N+W RS++ + L +YA+GGF
Sbjct: 232 NKWEVMTEFPQERSSISLVSLAGSLYAIGGF 262
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 785 RQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPE 844
++C + V +Y+P++ W+ + M RS GV + + GG + SVEA+D +
Sbjct: 171 KKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLK 230
Query: 845 TQTWSGVPDMALCRRNAVLESVAST 869
T W + + R + L S+A +
Sbjct: 231 TNKWEVMTEFPQERSSISLVSLAGS 255
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH-DGPLVR 835
V G D + L SV Y P W VK++ K G V + ++Y +GG D
Sbjct: 115 VAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174
Query: 836 KSVEAYDPETQTWSGVPDMALCR 858
V Y+P+ W + M R
Sbjct: 175 NRVFIYNPKKGDWKDLAPMKTPR 197
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 782 GISRQCLS-SVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHD---------G 831
G++ LS SVE + + N WE + + +RS + L LYA+GG
Sbjct: 214 GVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFA 273
Query: 832 PLVRKSVEAYDPETQTWSGV 851
P + Y+ + + W+G+
Sbjct: 274 PTEVNDIWKYEDDKKEWAGM 293
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 69/122 (56%), Gaps = 10/122 (8%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
Y + H++ ++N RK+++LCDV ++ +G AH+ VLAACS YFH+ + +++
Sbjct: 14 YESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE 73
Query: 103 -----QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDF 157
E + +KG +P LI + Y+ ++ ++++NV + L + ++ ++C F
Sbjct: 74 LTVTLPEEVTVKGFEP-----LIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQF 128
Query: 158 LQ 159
L+
Sbjct: 129 LK 130
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 1/134 (0%)
Query: 67 DVKLIADGVEVAAHKMVLAACSPYFHAMF-ISFEESKQERIVLKGVDPNALKLLIDYVYS 125
D L G E AHK +LAA SP F AMF EESK+ R+ + V+P K ++ ++Y+
Sbjct: 176 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 235
Query: 126 CEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLST 185
+ ++ LL AA+ L ++ C D L L N I ADLHS L +
Sbjct: 236 GKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQ 295
Query: 186 AENYIELHFAEIVE 199
A ++I H +++E
Sbjct: 296 AVDFINYHATDVLE 309
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEE-- 100
Y + H + +N RK+++LCDV LI + E AH+ VLAACS YF + +
Sbjct: 10 YESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKND 69
Query: 101 ---SKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDF 157
S E + +G P L+ + Y+ ++ ++ EN++ ++ A L++ ++ D+C F
Sbjct: 70 LVVSLPEEVTARGFGP-----LLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSF 124
Query: 158 L 158
L
Sbjct: 125 L 125
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 65/149 (43%), Gaps = 12/149 (8%)
Query: 322 MLVVGGQ----APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGS 377
+ VVGG+ + + SV CYD + +W +P ++ + VY +GG GS
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG-KGS 159
Query: 378 LR-------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDP 430
R VYDP EW PM+ RS G V + I G + +SAEVY
Sbjct: 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSI 219
Query: 431 STEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
+ KW RSS+ + L G LYA
Sbjct: 220 TDNKWAPFEAFPQERSSLSLVSLVGTLYA 248
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 72/171 (42%), Gaps = 33/171 (19%)
Query: 339 YDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN--------GSLRVYDPSTNEWSS 390
+D W + +P+ RC GL +Y VGG S+ YD + +W
Sbjct: 72 FDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGE 131
Query: 391 APPMEARRSTLGVAVLN--SLIYAVGGFDGSSG--LNSAEVYDPSTEKWNMIAPMSTRRS 446
+ P+ G VL+ L+Y +GG GS LN VYDP +W +APM T RS
Sbjct: 132 SDPLP--YVVYGHTVLSHMDLVYVIGG-KGSDRKCLNKMCVYDPKKFEWKELAPMQTARS 188
Query: 447 SVGVGVLNGCLYAENLDGRILGCVKEITDWGLIIELPNFLSASVHITEISD 497
G V DGRI+ +TD G L++S + I+D
Sbjct: 189 LFGATV---------HDGRII-VAAGVTDTG--------LTSSAEVYSITD 221
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 321 VMLVVGGQAP--KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEK--VYAVG---- 372
++ V+GG+ K + + YD K W+ +A M T R G +H+ + A G
Sbjct: 150 LVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGRIIVAAGVTDT 208
Query: 373 GFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGF---DGSSG------LN 423
G S VY + N+W+ RS+L + L +YA+GGF + SG LN
Sbjct: 209 GLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELN 268
Query: 424 SAEVYDPSTEKW 435
Y+ +KW
Sbjct: 269 DIWRYNEEEKKW 280
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%)
Query: 295 KKGEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPT 354
KK E +L ++T R+ + ++++ G S E Y +W P
Sbjct: 173 KKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ 232
Query: 355 RRCRAGLVFLHEKVYAVGGF 374
R LV L +YA+GGF
Sbjct: 233 ERSSLSLVSLVGTLYAIGGF 252
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGG------HDGPLVR---KSVE 839
SS E+YS N W P + +RS + L LYA+GG G LV +
Sbjct: 212 SSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIW 271
Query: 840 AYDPETQTWSGV 851
Y+ E + W GV
Sbjct: 272 RYNEEEKKWEGV 283
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 40/100 (40%)
Query: 770 AELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH 829
+ + + V G G R+CL+ + +Y P++ W+ + M RS G V D + G
Sbjct: 146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGV 205
Query: 830 DGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVAST 869
+ S E Y W+ R + L S+ T
Sbjct: 206 TDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGT 245
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 70/117 (59%), Gaps = 5/117 (4%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQE-- 104
H ++ ++ R+++ CD L+ DG E+ K +LAA SPY +++ K +
Sbjct: 29 QHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTK-LNYNPPKDDGS 87
Query: 105 --RIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+I L+G+ ++ ++DY++S +I + E+ +Q ++ AA+LL LTD++ CC+FL+
Sbjct: 88 TYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIV 107
H S +N +R +++L DV ++ + AHK VL ACS F+++F ++ K+ V
Sbjct: 12 HASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFT--DQLKRNLSV 69
Query: 108 LK---GVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQC 160
+ ++P +L+D++Y+ + + E N+ ++ A LQ+ V D C F++
Sbjct: 70 INLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIV 107
H S +N +R +++L DV ++ + AHK VL ACS F+++F + I
Sbjct: 15 HASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVIN 74
Query: 108 LKG-VDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
L ++P +L+D++Y+ + + E N+ ++ A LQ+ V D C F++
Sbjct: 75 LDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 127
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 67 DVKLIADGVEVAAHKMVLAACSPYFHAMF-ISFEESKQERIVLKGVDPNALKLLIDYVYS 125
D L G E AHK +LAA SP F AMF EESK+ R+ + V+P K ++ ++Y+
Sbjct: 27 DCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYT 86
Query: 126 CEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHS 178
+ ++ LL AA+ L ++ C D L L N I ADLHS
Sbjct: 87 GKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHS 139
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 67 DVKLIADGVEVAAHKMVLAACSPYFHAMF-ISFEESKQERIVLKGVDPNALKLLIDYVYS 125
D L G E AHK +LAA SP F A F EESK+ R+ + V+P K ++Y+
Sbjct: 36 DCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXXCFIYT 95
Query: 126 CEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLST 185
+ ++ LL AA+ L ++ C D L L N I ADLHS L +
Sbjct: 96 GKAPNLDKXADDLLAAADKYALERLKVXCEDALCSNLSVENAAEILILADLHSADQLKTQ 155
Query: 186 AENYIELHFAEIVE 199
A ++I H +++E
Sbjct: 156 AVDFINYHATDVLE 169
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 54 ETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVL-KGVD 112
E +N R Q L CDV ++ G AH+ VLAA S YF + F S+ + L V
Sbjct: 22 ECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDL---FNNSRSAVVELPAAVQ 78
Query: 113 PNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFL 158
P + + ++ + Y+ + + + +L+ A LQ+ ++ + +F
Sbjct: 79 PQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFF 124
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 46 VHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQER 105
V H+ + + +N R++ CD L G+ AH VLA CS +F ++ + +
Sbjct: 5 VQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSL---YGDGSGGS 61
Query: 106 IVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDF 157
+VL LL+D+ Y+ + +T N +L AA L++ + + C F
Sbjct: 62 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSF 113
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERI 106
HH E +N R+ LCD ++ + AH+ VLA+ S YF A++ S + + +
Sbjct: 4 HHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS---TSENNV 60
Query: 107 VL--KGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDAC 154
L V + + L++++Y+ + + NV+ + AA+ L++ +V C
Sbjct: 61 FLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKC 110
>pdb|1WI5|A Chain A, Solution Structure Of The S1 Rna Binding Domain From Human
Hypothetical Protein Baa11502
Length = 119
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 13/88 (14%)
Query: 552 HVNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFI-------------KYDSV 598
+VN + L+ G++L V S EDHGYL+D+GV TRAF+ K +
Sbjct: 9 NVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKL 68
Query: 599 ILGQIVTCMISKIKVAASMSILEVTLDE 626
+GQ + C++ K+K + L V E
Sbjct: 69 KVGQYLNCIVEKVKGNGGVVSLSVGHSE 96
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 44 RNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQ 103
+N H + N MR LCDV ++ D E AH+ VLA S F +F
Sbjct: 7 QNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF----HRNS 62
Query: 104 ERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ L + P + +++Y Y+ + E++ LL AA +L++ + + C L+
Sbjct: 63 QHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 44 RNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQ 103
+N H + N MR LCDV ++ D E AH+ VLA S F +F
Sbjct: 6 QNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF----HRNS 61
Query: 104 ERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFL 158
+ L + P + +++Y Y+ + E++ LL AA +L++ + + C L
Sbjct: 62 QHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKML 116
>pdb|2EQX|A Chain A, Solution Structure Of The Back Domain Of Kelch Repeat And
Btb Domain-Containing Protein 4
Length = 105
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 166 NCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKLMVSNE 225
NCL + AD HS +L + A++ + H A++ EEFL L H + +IS V
Sbjct: 12 NCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG---VPCS 68
Query: 226 EKVFECVIAWVNYDLESRQ 244
+ E + AW+N++ E R+
Sbjct: 69 QNPTEAIEAWINFNKEERE 87
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 77 VAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQ 136
V AHK VLA S F+A F + I + V+P A +L+ Y YS EI + + V
Sbjct: 24 VPAHKYVLAVGSSVFYAXFYGDLAEVKSEIHIPDVEPAAFLILLKYXYSDEIDLEADTVL 83
Query: 137 MLLPAANLLQLTDVRDACCDFLQCQL 162
L AA + + AC +FL+ L
Sbjct: 84 ATLYAAKKYIVPALAKACVNFLETSL 109
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 51 KAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKG 110
+ + +N R++ CD L G+ AH VLA CS +F + + + +VL
Sbjct: 11 RVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRI---YGDGTGGSVVLPA 67
Query: 111 VDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDF 157
LL+D+ Y+ + +T N +L AA L++ + + C F
Sbjct: 68 GFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSF 114
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 45 NVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQE 104
++ ++ ++N R L CDV +I + + AHK +L+A S YFH +F +
Sbjct: 13 DIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF----SVAGQ 68
Query: 105 RIVLKGVDPNALKLLIDYVYSCEI 128
+ L + +++Y+YS +I
Sbjct: 69 VVELSFIRAEIFAEILNYIYSSKI 92
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 45 NVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQE 104
++ ++ ++N R L CDV +I + + AHK +L+A S YFH +F +
Sbjct: 11 DIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF----SVAGQ 66
Query: 105 RIVLKGVDPNALKLLIDYVYSCEI 128
+ L + +++Y+YS +I
Sbjct: 67 VVELSFIRAEIFAEILNYIYSSKI 90
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGG-HDGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG H G + K+ E Y P ++TW
Sbjct: 250 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTW 309
Query: 849 SGVPD 853
+ +P+
Sbjct: 310 TSLPN 314
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG G + EVY PS++ W
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTW 309
>pdb|2EID|A Chain A, Galactose Oxidase W290g Mutant
Length = 639
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGGFDGSSGL--NSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG GS G+ + EVY PS++ W
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG-SGSGGVFEKNGEVYSPSSKTW 309
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG G + K+ E Y P ++TW
Sbjct: 250 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSGSGGVFEKNGEVYSPSSKTW 309
Query: 849 SGVPD 853
+ +P+
Sbjct: 310 TSLPN 314
>pdb|2WQ8|A Chain A, Glycan Labelling Using Engineered Variants Of Galactose
Oxidase Obtained By Directed Evolution
Length = 661
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG F G + EVY PS++ W
Sbjct: 274 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTW 331
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG G + K+ E Y P ++TW
Sbjct: 272 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTW 331
Query: 849 SGVPD 853
+ +P+
Sbjct: 332 TSLPN 336
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 322 MLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRC-RAGLVFLHEKVYAVGG-FNGSL- 378
++V GG K YD ++ W +M R ++ +V+ +GG F+G +
Sbjct: 261 IVVTGGNDAK---KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVF 317
Query: 379 ----RVYDPSTNEWSSAP 392
VY PS+ W+S P
Sbjct: 318 EKNGEVYSPSSKTWTSLP 335
>pdb|2EIC|A Chain A, Crystal Structure Of Galactose Oxidase Mutant W290f
Length = 639
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG F G + EVY PS++ W
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTW 309
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG G + K+ E Y P ++TW
Sbjct: 250 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVFEKNGEVYSPSSKTW 309
Query: 849 SGVPD 853
+ +P+
Sbjct: 310 TSLPN 314
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 322 MLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRC-RAGLVFLHEKVYAVGG-FNGSL- 378
++V GG K YD ++ W +M R ++ +V+ +GG F+G +
Sbjct: 239 IVVTGGNDAK---KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSFSGGVF 295
Query: 379 ----RVYDPSTNEWSSAP 392
VY PS+ W+S P
Sbjct: 296 EKNGEVYSPSSKTWTSLP 313
>pdb|2EIE|A Chain A, Crystal Structure Of Galactose Oxidase Complexed With
Azide
pdb|1GOF|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOG|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|1GOH|A Chain A, Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal
Structure Of Galactose Oxidase
pdb|2JKX|A Chain A, Galactose Oxidase. Matgo. Copper Free, Expressed In Pichia
Pastoris.
pdb|2VZ1|A Chain A, Premat-Galactose Oxidase
pdb|2VZ3|A Chain A, Bleached Galactose Oxidase
Length = 639
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG G + K+ E Y P ++TW
Sbjct: 250 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 309
Query: 849 SGVPD 853
+ +P+
Sbjct: 310 TSLPN 314
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG + G + EVY PS++ W
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 309
>pdb|1K3I|A Chain A, Crystal Structure Of The Precursor Of Galactose Oxidase
Length = 656
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG G + K+ E Y P ++TW
Sbjct: 267 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326
Query: 849 SGVPD 853
+ +P+
Sbjct: 327 TSLPN 331
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG + G + EVY PS++ W
Sbjct: 269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326
>pdb|1T2X|A Chain A, Glactose Oxidase C383s Mutant Identified By Directed
Evolution
Length = 639
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 791 VEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DGPLVRKSVEAYDPETQTW 848
+Y ++W P DM R + D ++ +GG G + K+ E Y P ++TW
Sbjct: 250 TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 309
Query: 849 SGVPD 853
+ +P+
Sbjct: 310 TSLPN 314
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 380 VYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKW 435
+YD S++ W P M+ R A + + ++ +GG + G + EVY PS++ W
Sbjct: 252 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 309
>pdb|3M5B|A Chain A, Crystal Structure Of The Btb Domain From FazfZBTB32
pdb|3M5B|B Chain B, Crystal Structure Of The Btb Domain From FazfZBTB32
Length = 119
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 60 RKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLL 119
R + LCD + E AH +VLA S + + + +G+ P+ L
Sbjct: 25 RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLG--------RRGQWALGEGISPSTFAQL 76
Query: 120 IDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDAC 154
+++VY + + ++ L AA L + + +AC
Sbjct: 77 LNFVYGESVELQPGELRPLQEAARALGVQSLEEAC 111
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Query: 374 FNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLN--SLIYAVGGFDGSSGLNSAEVYD-- 429
FN L +DPST +WS A T G AV+N + + G + GL + V++
Sbjct: 166 FNKFLLSFDPSTQQWSYA-GESPWYGTAGAAVVNKGDKTWLING-EAKPGLRTDAVFELD 223
Query: 430 --PSTEKWNMIAPMSTRRSSVG--VGVLNGCL 457
+ KWN +AP+S+ G G+ N L
Sbjct: 224 FTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255
>pdb|1Q7R|A Chain A, X-Ray Crystallographic Analysis Of A Predicted
Amidotransferase From B. Stearothermophilus At 1.9 A
Resolution
Length = 219
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 724 TGRPEFSVCISIV---KKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVG-G 779
G+P F C ++ K+ + D G + R SF R++ S AELS GVG G
Sbjct: 93 AGKPXFGTCAGLILLAKRIVGYDEPHLGLXDIT--VERNSFGRQRESFEAELSIKGVGDG 150
Query: 780 YDGI 783
+ G+
Sbjct: 151 FVGV 154
>pdb|3HXJ|A Chain A, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|B Chain B, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|C Chain C, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
pdb|3HXJ|D Chain D, Crystal Structure Of Pyrrolo-quinoline Quinone (pqq_dh)
From Methanococcus Maripaludis, Northeast Structural
Genomics Consortium Target Mrr86
Length = 330
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 415 GFDGSSGLNSAEVY--DPS-TEKWNMIA-------PMSTRRSSVGVGVLNGCLYAENLDG 464
G DG+ S +VY +P TEKWN A P + ++ V L+G LYA N DG
Sbjct: 185 GKDGTIYFGSDKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG 244
>pdb|1SCF|A Chain A, Human Recombinant Stem Cell Factor
pdb|1SCF|B Chain B, Human Recombinant Stem Cell Factor
pdb|1SCF|C Chain C, Human Recombinant Stem Cell Factor
pdb|1SCF|D Chain D, Human Recombinant Stem Cell Factor
Length = 273
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 482 LPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLV--VAKILECVTNNL 539
LP+ S + ++SD +DLL+K+SN I E LSN I LV V ++ECV N
Sbjct: 64 LPSHCWISEXVVQLSDSLTDLLDKFSN--ISE--GLSNYSIIDKLVNIVDDLVECVKEN- 118
Query: 540 GQKQIKASL 548
K +K S
Sbjct: 119 SSKDLKKSF 127
>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant
pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
E178q Mutant In Complex With Manganese
Length = 1155
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 19/90 (21%)
Query: 244 QKHVAELMEYVRLPLLSEDYLIQRVEEETVFKNDIRCKDYLIEALKYHILVKKGEVNKLT 303
++H+ +++ Y R P L E L+ + EETV++ VK G++ K+
Sbjct: 767 KRHMGKIV-YSRWPFLRESKLLSLITEETVYEG-----------------VKSGKLTKV- 807
Query: 304 LVRTPRTKPRQPLRVPKVMLVVGGQAPKAI 333
+ R P+ R+ R K+ L Q KAI
Sbjct: 808 IERKPQDFERKEFRELKMTLKSNYQRTKAI 837
>pdb|1EXZ|A Chain A, Structure Of Stem Cell Factor
pdb|1EXZ|B Chain B, Structure Of Stem Cell Factor
pdb|1EXZ|C Chain C, Structure Of Stem Cell Factor
pdb|1EXZ|D Chain D, Structure Of Stem Cell Factor
pdb|2E9W|C Chain C, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|D Chain D, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 141
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 482 LPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLV--VAKILECVTNNL 539
LP+ S + ++SD +DLL+K+SN I E LSN I LV V ++ECV N
Sbjct: 39 LPSHCWISEMVVQLSDSLTDLLDKFSN--ISE--GLSNYSIIDKLVNIVDDLVECVKEN- 93
Query: 540 GQKQIKASL 548
K +K S
Sbjct: 94 SSKDLKKSF 102
>pdb|2BH8|A Chain A, Combinatorial Protein 1b11
pdb|2BH8|B Chain B, Combinatorial Protein 1b11
Length = 101
Score = 30.0 bits (66), Expect = 7.7, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 465 RILGCVKEITDWGLIIELPNFLSASVHITEIS 496
R+ G +K ITD+G+ I L + VH+++IS
Sbjct: 64 RVEGKIKSITDFGIFIGLDGGIDGLVHLSDIS 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,733,423
Number of Sequences: 62578
Number of extensions: 1217073
Number of successful extensions: 3166
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2897
Number of HSP's gapped (non-prelim): 170
length of query: 1026
length of database: 14,973,337
effective HSP length: 109
effective length of query: 917
effective length of database: 8,152,335
effective search space: 7475691195
effective search space used: 7475691195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)