Query psy9769
Match_columns 1026
No_of_seqs 692 out of 4785
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 19:05:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 3.2E-82 6.9E-87 739.7 51.8 442 38-486 9-466 (571)
2 PHA02713 hypothetical protein; 100.0 6.1E-77 1.3E-81 700.5 46.9 416 43-484 3-452 (557)
3 PHA03098 kelch-like protein; P 100.0 4.5E-67 9.8E-72 625.4 48.9 401 62-486 6-428 (534)
4 PHA02790 Kelch-like protein; P 100.0 5.4E-67 1.2E-71 608.6 46.4 388 54-462 11-415 (480)
5 COG0539 RpsA Ribosomal protein 100.0 1.1E-46 2.4E-51 418.1 21.4 414 520-1015 62-508 (541)
6 COG0539 RpsA Ribosomal protein 100.0 1.7E-45 3.7E-50 408.6 18.5 393 557-1023 14-437 (541)
7 PRK12269 bifunctional cytidyla 100.0 9.3E-44 2E-48 424.9 21.8 422 520-1015 357-821 (863)
8 PRK13806 rpsA 30S ribosomal pr 100.0 3.2E-41 7E-46 389.0 19.6 390 561-1019 31-449 (491)
9 TIGR00717 rpsA ribosomal prote 100.0 2.7E-41 5.9E-46 399.3 18.6 423 519-1016 56-513 (516)
10 PRK06299 rpsA 30S ribosomal pr 100.0 6.4E-41 1.4E-45 399.1 20.6 421 520-1015 71-526 (565)
11 PRK12269 bifunctional cytidyla 100.0 3.9E-39 8.4E-44 385.3 19.9 402 550-1021 307-738 (863)
12 PRK06299 rpsA 30S ribosomal pr 100.0 9.9E-38 2.1E-42 371.8 21.9 385 560-1015 26-440 (565)
13 KOG4441|consensus 100.0 2.9E-36 6.4E-41 353.0 29.9 347 115-485 122-512 (571)
14 PRK07899 rpsA 30S ribosomal pr 100.0 8.2E-36 1.8E-40 336.7 18.8 307 559-1020 30-364 (486)
15 TIGR00717 rpsA ribosomal prote 100.0 5.9E-36 1.3E-40 353.9 17.3 385 559-1014 13-425 (516)
16 PHA02713 hypothetical protein; 100.0 1.2E-33 2.7E-38 333.3 27.0 189 297-486 282-503 (557)
17 PRK06676 rpsA 30S ribosomal pr 100.0 2E-32 4.2E-37 311.4 20.1 305 558-1015 11-343 (390)
18 KOG1070|consensus 100.0 1.1E-31 2.5E-36 313.0 25.9 464 517-1015 110-665 (1710)
19 PHA03098 kelch-like protein; P 100.0 7.1E-30 1.5E-34 305.2 32.8 325 129-484 104-476 (534)
20 PRK00087 4-hydroxy-3-methylbut 100.0 7.2E-31 1.6E-35 313.8 18.3 310 558-1021 296-634 (647)
21 PLN02153 epithiospecifier prot 100.0 5.7E-29 1.2E-33 279.3 30.4 158 305-463 19-202 (341)
22 PLN02193 nitrile-specifier pro 100.0 3.9E-28 8.4E-33 282.2 33.9 163 318-480 119-310 (470)
23 KOG4350|consensus 100.0 2.8E-30 6.1E-35 265.3 13.1 234 47-289 26-263 (620)
24 TIGR03547 muta_rot_YjhT mutatr 100.0 2.9E-28 6.3E-33 274.8 29.1 154 306-463 5-209 (346)
25 PRK14131 N-acetylneuraminic ac 100.0 1E-27 2.3E-32 271.9 30.4 181 302-486 22-262 (376)
26 TIGR03548 mutarot_permut cycli 100.0 7.9E-28 1.7E-32 268.1 27.5 146 318-463 12-180 (323)
27 PRK13806 rpsA 30S ribosomal pr 100.0 5.4E-29 1.2E-33 287.6 15.7 350 520-944 75-464 (491)
28 PLN02193 nitrile-specifier pro 100.0 5.2E-27 1.1E-31 272.7 31.2 176 306-482 163-361 (470)
29 PHA02790 Kelch-like protein; P 100.0 1.5E-27 3.3E-32 278.0 22.8 171 298-479 298-477 (480)
30 PRK14131 N-acetylneuraminic ac 99.9 1.3E-25 2.8E-30 254.8 29.9 120 345-464 18-149 (376)
31 KOG4693|consensus 99.9 4.7E-26 1E-30 222.8 19.1 158 307-464 11-201 (392)
32 PLN02153 epithiospecifier prot 99.9 4.5E-25 9.7E-30 247.8 28.1 123 341-463 4-146 (341)
33 PRK07899 rpsA 30S ribosomal pr 99.9 2.1E-25 4.6E-30 252.3 18.1 264 517-937 76-368 (486)
34 PRK07400 30S ribosomal protein 99.9 2E-25 4.2E-30 241.7 16.5 226 644-1021 28-267 (318)
35 KOG4693|consensus 99.9 6.4E-24 1.4E-28 208.0 22.2 135 345-479 3-172 (392)
36 TIGR03547 muta_rot_YjhT mutatr 99.9 1.1E-23 2.3E-28 237.7 21.7 193 297-490 41-316 (346)
37 TIGR03548 mutarot_permut cycli 99.9 1.8E-23 3.8E-28 233.2 22.0 184 299-484 53-291 (323)
38 PRK06676 rpsA 30S ribosomal pr 99.9 7.8E-23 1.7E-27 232.8 17.2 266 518-939 60-354 (390)
39 KOG2075|consensus 99.9 3.4E-23 7.4E-28 220.1 11.9 227 49-276 98-342 (521)
40 PRK07400 30S ribosomal protein 99.9 5.1E-23 1.1E-27 223.0 13.5 221 561-940 28-273 (318)
41 PRK00087 4-hydroxy-3-methylbut 99.9 1.4E-21 3E-26 234.1 17.1 267 515-937 341-637 (647)
42 KOG1230|consensus 99.8 3.3E-20 7.1E-25 193.1 18.3 159 306-464 64-252 (521)
43 KOG0379|consensus 99.8 8.8E-20 1.9E-24 211.3 24.1 157 306-463 58-233 (482)
44 KOG1070|consensus 99.8 1.8E-20 4E-25 220.2 16.5 430 518-1015 465-954 (1710)
45 KOG4152|consensus 99.8 6.6E-19 1.4E-23 187.0 17.7 120 344-463 17-155 (830)
46 KOG4682|consensus 99.8 7.5E-19 1.6E-23 182.3 11.4 181 56-237 60-246 (488)
47 KOG0379|consensus 99.8 4.2E-18 9.1E-23 197.4 18.3 175 308-483 112-312 (482)
48 KOG4152|consensus 99.8 6.3E-18 1.4E-22 179.7 17.5 185 305-490 29-261 (830)
49 KOG4591|consensus 99.8 1.7E-18 3.8E-23 162.2 8.4 171 46-219 47-222 (280)
50 KOG1230|consensus 99.7 2.9E-17 6.3E-22 171.3 14.7 185 295-479 106-347 (521)
51 PF00651 BTB: BTB/POZ domain; 99.7 5.1E-17 1.1E-21 150.7 10.6 106 56-161 1-110 (111)
52 COG1098 VacB Predicted RNA bin 99.6 9.6E-16 2.1E-20 133.3 5.7 76 947-1023 3-78 (129)
53 PF07707 BACK: BTB And C-termi 99.6 2.4E-15 5.1E-20 137.3 4.4 102 167-268 1-102 (103)
54 cd05705 S1_Rrp5_repeat_hs14 S1 99.5 1.4E-14 3E-19 121.3 8.4 69 948-1016 2-73 (74)
55 smart00225 BTB Broad-Complex, 99.5 5.3E-14 1.1E-18 124.7 8.8 89 67-155 1-90 (90)
56 cd05703 S1_Rrp5_repeat_hs12_sc 99.5 9.5E-14 2E-18 116.1 7.5 68 950-1017 1-70 (73)
57 cd04461 S1_Rrp5_repeat_hs8_sc7 99.4 2.7E-13 5.8E-18 117.4 7.5 75 941-1015 6-80 (83)
58 cd05694 S1_Rrp5_repeat_hs2_sc2 99.4 3.6E-13 7.9E-18 112.5 7.9 70 946-1021 1-71 (74)
59 KOG0783|consensus 99.4 5.3E-14 1.2E-18 157.8 3.7 149 65-213 710-866 (1267)
60 cd05704 S1_Rrp5_repeat_hs13 S1 99.4 4.6E-13 9.9E-18 111.9 8.1 68 948-1015 2-70 (72)
61 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.4 4.4E-13 9.6E-18 111.6 7.7 67 950-1016 1-69 (71)
62 smart00875 BACK BTB And C-term 99.4 6.4E-13 1.4E-17 120.7 8.3 99 167-266 1-99 (101)
63 cd05698 S1_Rrp5_repeat_hs6_sc5 99.4 8E-13 1.7E-17 110.6 7.2 66 950-1015 1-66 (70)
64 cd05707 S1_Rrp5_repeat_sc11 S1 99.4 1.1E-12 2.5E-17 108.8 7.7 66 950-1015 1-66 (68)
65 COG3055 Uncharacterized protei 99.4 2.2E-11 4.9E-16 126.7 18.8 169 314-485 41-268 (381)
66 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.4 1.4E-12 3E-17 108.6 8.0 65 950-1014 1-65 (69)
67 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.4 2.4E-12 5.3E-17 105.3 8.1 65 950-1016 1-65 (66)
68 cd05690 S1_RPS1_repeat_ec5 S1_ 99.3 3.3E-12 7.1E-17 106.6 8.0 67 950-1016 1-68 (69)
69 PF00575 S1: S1 RNA binding do 99.3 6.4E-12 1.4E-16 106.5 9.1 69 947-1015 2-70 (74)
70 cd05706 S1_Rrp5_repeat_sc10 S1 99.3 7.7E-12 1.7E-16 105.6 9.0 67 948-1014 2-68 (73)
71 PTZ00248 eukaryotic translatio 99.3 4.5E-12 9.8E-17 134.1 7.1 72 949-1020 17-90 (319)
72 cd05686 S1_pNO40 S1_pNO40: pNO 99.3 1.2E-11 2.6E-16 103.9 7.6 67 949-1015 3-71 (73)
73 PTZ00248 eukaryotic translatio 99.3 1.4E-13 3.1E-18 145.3 -5.1 133 873-1007 16-173 (319)
74 PRK08582 hypothetical protein; 99.2 2.5E-11 5.3E-16 114.6 9.5 69 947-1015 3-72 (139)
75 cd05689 S1_RPS1_repeat_ec4 S1_ 99.2 2.8E-11 6.1E-16 101.8 8.8 68 948-1015 2-70 (72)
76 cd05691 S1_RPS1_repeat_ec6 S1_ 99.2 1.6E-11 3.5E-16 103.8 7.0 66 950-1015 1-66 (73)
77 PRK07252 hypothetical protein; 99.2 2.7E-11 5.8E-16 111.0 8.0 67 948-1014 2-68 (120)
78 cd05693 S1_Rrp5_repeat_hs1_sc1 99.2 2.6E-11 5.7E-16 107.7 6.8 69 948-1016 2-94 (100)
79 cd04452 S1_IF2_alpha S1_IF2_al 99.2 4.1E-11 8.9E-16 102.2 7.7 66 948-1013 2-69 (76)
80 COG3055 Uncharacterized protei 99.2 4E-10 8.7E-15 117.5 16.3 200 297-497 70-351 (381)
81 cd05687 S1_RPS1_repeat_ec1_hs1 99.2 5.8E-11 1.3E-15 99.3 7.8 64 950-1013 1-64 (70)
82 cd05708 S1_Rrp5_repeat_sc12 S1 99.2 1E-10 2.2E-15 100.1 8.4 68 948-1015 1-69 (77)
83 cd05685 S1_Tex S1_Tex: The C-t 99.2 8.6E-11 1.9E-15 97.9 7.5 65 950-1014 1-65 (68)
84 cd05702 S1_Rrp5_repeat_hs11_sc 99.2 1.1E-10 2.3E-15 97.4 7.8 63 950-1012 1-65 (70)
85 cd05684 S1_DHX8_helicase S1_DH 99.1 2.2E-10 4.8E-15 98.2 8.8 66 950-1015 1-70 (79)
86 cd05692 S1_RPS1_repeat_hs4 S1_ 99.1 2E-10 4.3E-15 96.0 8.3 66 950-1015 1-67 (69)
87 PF13964 Kelch_6: Kelch motif 99.1 1.6E-10 3.4E-15 89.2 6.3 49 397-445 1-50 (50)
88 cd04465 S1_RPS1_repeat_ec2_hs2 99.1 2.2E-10 4.7E-15 94.7 7.5 63 950-1015 1-63 (67)
89 PRK08059 general stress protei 99.1 2.1E-10 4.5E-15 106.7 7.8 70 945-1014 3-72 (123)
90 PRK05807 hypothetical protein; 99.1 2.1E-10 4.5E-15 108.1 7.6 68 947-1015 3-71 (136)
91 cd05688 S1_RPS1_repeat_ec3 S1_ 99.1 4.3E-10 9.3E-15 93.6 8.1 66 949-1015 1-66 (68)
92 cd04453 S1_RNase_E S1_RNase_E: 99.1 5E-10 1.1E-14 97.1 7.8 62 948-1009 6-72 (88)
93 cd04472 S1_PNPase S1_PNPase: P 99.0 6.2E-10 1.4E-14 92.6 7.5 60 950-1009 1-60 (68)
94 PHA02945 interferon resistance 99.0 1.3E-09 2.9E-14 89.7 7.6 66 948-1016 10-79 (88)
95 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 99.0 1.1E-09 2.3E-14 95.8 7.1 71 948-1018 5-80 (86)
96 smart00316 S1 Ribosomal protei 99.0 2.1E-09 4.5E-14 90.6 8.6 65 949-1013 2-66 (72)
97 TIGR02696 pppGpp_PNP guanosine 98.9 1.2E-09 2.5E-14 127.7 8.1 63 947-1009 645-711 (719)
98 cd05694 S1_Rrp5_repeat_hs2_sc2 98.9 1E-09 2.2E-14 91.7 4.7 71 644-718 1-71 (74)
99 cd04471 S1_RNase_R S1_RNase_R: 98.9 3.8E-09 8.2E-14 91.8 8.4 66 949-1014 1-78 (83)
100 PF13964 Kelch_6: Kelch motif 98.9 2.1E-09 4.5E-14 82.9 5.8 44 355-398 1-50 (50)
101 cd04454 S1_Rrp4_like S1_Rrp4_l 98.9 2.9E-09 6.3E-14 91.9 7.4 74 948-1021 5-79 (82)
102 KOG2437|consensus 98.9 7.3E-10 1.6E-14 119.0 2.8 151 319-469 272-462 (723)
103 PLN00207 polyribonucleotide nu 98.9 2.3E-09 4.9E-14 128.1 6.6 69 947-1015 751-821 (891)
104 cd04473 S1_RecJ_like S1_RecJ_l 98.9 1E-08 2.2E-13 87.0 8.8 66 940-1014 7-72 (77)
105 cd00164 S1_like S1_like: Ribos 98.9 5.5E-09 1.2E-13 85.9 6.9 63 953-1015 1-63 (65)
106 PRK03987 translation initiatio 98.8 4.5E-09 9.8E-14 110.3 7.3 67 948-1014 7-75 (262)
107 PF01344 Kelch_1: Kelch motif; 98.8 3.2E-09 6.8E-14 80.9 4.5 46 397-442 1-47 (47)
108 KOG2437|consensus 98.8 3.2E-09 6.8E-14 114.2 5.5 130 352-481 257-421 (723)
109 COG1093 SUI2 Translation initi 98.8 3.3E-09 7.1E-14 106.1 5.2 65 950-1014 12-78 (269)
110 cd04455 S1_NusA S1_NusA: N-uti 98.7 3.3E-08 7.2E-13 81.3 7.9 57 948-1011 2-58 (67)
111 COG2183 Tex Transcriptional ac 98.7 1.3E-08 2.9E-13 117.7 6.2 75 941-1015 650-724 (780)
112 PRK11824 polynucleotide phosph 98.7 3.2E-08 6.8E-13 119.4 9.4 69 947-1015 619-688 (693)
113 PF13415 Kelch_3: Galactose ox 98.7 2.5E-08 5.5E-13 76.4 5.6 47 407-453 1-49 (49)
114 cd05695 S1_Rrp5_repeat_hs3 S1_ 98.7 1.5E-08 3.2E-13 83.0 4.0 64 648-714 1-66 (66)
115 cd05705 S1_Rrp5_repeat_hs14 S1 98.7 1.7E-08 3.6E-13 84.6 4.4 67 645-714 1-74 (74)
116 PF07646 Kelch_2: Kelch motif; 98.7 5.5E-08 1.2E-12 74.4 6.4 46 397-442 1-49 (49)
117 PRK09521 exosome complex RNA-b 98.7 4E-08 8.6E-13 99.3 7.2 73 948-1021 63-145 (189)
118 TIGR03591 polynuc_phos polyrib 98.6 4.3E-08 9.3E-13 117.9 7.9 63 947-1009 616-678 (684)
119 cd05703 S1_Rrp5_repeat_hs12_sc 98.6 4.2E-08 9E-13 82.1 4.5 66 648-716 1-72 (73)
120 PF00575 S1: S1 RNA binding do 98.6 6.7E-08 1.5E-12 81.7 5.3 69 645-716 2-74 (74)
121 smart00612 Kelch Kelch domain. 98.6 7.5E-08 1.6E-12 73.2 5.0 47 409-455 1-47 (47)
122 PF01344 Kelch_1: Kelch motif; 98.6 5.1E-08 1.1E-12 74.1 3.8 41 355-395 1-47 (47)
123 PF13418 Kelch_4: Galactose ox 98.6 5.6E-08 1.2E-12 74.6 3.8 47 397-443 1-49 (49)
124 COG1098 VacB Predicted RNA bin 98.5 7.3E-08 1.6E-12 84.7 3.9 74 644-721 2-79 (129)
125 COG1185 Pnp Polyribonucleotide 98.5 1.6E-07 3.5E-12 107.0 6.7 71 945-1015 615-686 (692)
126 cd04460 S1_RpoE S1_RpoE: RpoE, 98.5 3.4E-07 7.4E-12 82.1 7.3 66 951-1017 1-84 (99)
127 cd05693 S1_Rrp5_repeat_hs1_sc1 98.5 1.5E-07 3.3E-12 83.7 4.9 73 645-720 1-99 (100)
128 PF13415 Kelch_3: Galactose ox 98.5 2.6E-07 5.6E-12 70.7 5.4 46 319-364 1-49 (49)
129 cd05791 S1_CSL4 S1_CSL4: CSL4, 98.5 3.7E-07 8E-12 79.9 6.7 74 948-1021 5-89 (92)
130 cd05697 S1_Rrp5_repeat_hs5 S1_ 98.4 1.9E-07 4.1E-12 77.6 4.5 65 648-715 1-69 (69)
131 cd04461 S1_Rrp5_repeat_hs8_sc7 98.4 2.3E-07 5.1E-12 80.2 4.8 73 640-715 7-83 (83)
132 cd04465 S1_RPS1_repeat_ec2_hs2 98.4 2.3E-07 4.9E-12 76.6 4.5 65 648-716 1-67 (67)
133 cd05698 S1_Rrp5_repeat_hs6_sc5 98.4 2.6E-07 5.7E-12 77.1 4.6 66 648-716 1-70 (70)
134 PRK04163 exosome complex RNA-b 98.4 5.7E-07 1.2E-11 93.8 7.7 74 948-1021 62-140 (235)
135 cd05696 S1_Rrp5_repeat_hs4 S1_ 98.4 3.1E-07 6.7E-12 76.5 4.3 65 648-715 1-71 (71)
136 PF07646 Kelch_2: Kelch motif; 98.4 6.5E-07 1.4E-11 68.5 5.7 41 355-395 1-49 (49)
137 cd05706 S1_Rrp5_repeat_sc10 S1 98.4 4.4E-07 9.6E-12 76.4 5.0 69 645-716 1-73 (73)
138 smart00612 Kelch Kelch domain. 98.3 6.6E-07 1.4E-11 68.0 4.9 46 321-366 1-47 (47)
139 cd05707 S1_Rrp5_repeat_sc11 S1 98.3 5.4E-07 1.2E-11 74.6 4.2 64 648-714 1-68 (68)
140 PF13418 Kelch_4: Galactose ox 98.3 6.9E-07 1.5E-11 68.5 4.4 42 355-396 1-49 (49)
141 KOG1067|consensus 98.3 6E-07 1.3E-11 98.3 5.0 69 944-1012 663-731 (760)
142 PRK09202 nusA transcription el 98.3 6E-07 1.3E-11 102.1 4.4 101 913-1020 85-202 (470)
143 PHA02945 interferon resistance 98.3 1E-06 2.2E-11 73.0 4.3 69 646-717 10-83 (88)
144 KOG0783|consensus 98.2 1.9E-06 4.1E-11 98.4 7.2 105 52-156 541-683 (1267)
145 COG2996 Predicted RNA-bindinin 98.2 7.7E-05 1.7E-09 75.7 17.6 130 870-1014 69-211 (287)
146 cd05704 S1_Rrp5_repeat_hs13 S1 98.2 1.4E-06 3E-11 72.8 4.5 67 645-716 1-72 (72)
147 PLN02772 guanylate kinase 98.2 5.3E-06 1.2E-10 91.1 10.2 85 395-484 22-111 (398)
148 TIGR02063 RNase_R ribonuclease 98.2 3.7E-06 8E-11 103.1 8.6 72 943-1014 621-704 (709)
149 TIGR01953 NusA transcription t 98.2 1.6E-06 3.5E-11 94.6 4.8 101 913-1021 82-201 (341)
150 cd05687 S1_RPS1_repeat_ec1_hs1 98.1 2.4E-06 5.1E-11 71.3 4.4 66 648-716 1-70 (70)
151 TIGR00448 rpoE DNA-directed RN 98.1 8.8E-06 1.9E-10 81.5 8.7 60 948-1008 80-150 (179)
152 KOG0511|consensus 98.1 2.3E-06 5E-11 89.5 4.4 133 75-208 301-444 (516)
153 cd05691 S1_RPS1_repeat_ec6 S1_ 98.1 3E-06 6.5E-11 71.4 4.3 67 648-717 1-71 (73)
154 PRK07252 hypothetical protein; 98.1 3.8E-06 8.1E-11 77.3 5.0 72 646-720 2-77 (120)
155 cd04452 S1_IF2_alpha S1_IF2_al 98.1 4.9E-06 1.1E-10 70.7 4.7 70 646-717 2-76 (76)
156 PF13854 Kelch_5: Kelch motif 98.1 8.3E-06 1.8E-10 59.9 5.2 39 394-432 1-41 (42)
157 PRK11642 exoribonuclease R; Pr 98.1 8.5E-06 1.8E-10 99.8 8.5 72 943-1014 637-720 (813)
158 COG1093 SUI2 Translation initi 98.0 4.5E-06 9.7E-11 84.1 4.5 71 646-718 10-85 (269)
159 cd05708 S1_Rrp5_repeat_sc12 S1 98.0 5.2E-06 1.1E-10 70.8 4.4 70 647-718 2-75 (77)
160 PLN02772 guanylate kinase 98.0 2.4E-05 5.2E-10 86.0 10.3 78 353-432 22-109 (398)
161 TIGR00358 3_prime_RNase VacB a 98.0 1.3E-05 2.9E-10 96.9 8.4 73 943-1015 566-650 (654)
162 cd04455 S1_NusA S1_NusA: N-uti 98.0 1E-05 2.2E-10 66.6 5.1 59 563-623 2-66 (67)
163 COG1095 RPB7 DNA-directed RNA 98.0 1.4E-05 3E-10 76.9 6.6 62 950-1012 82-154 (183)
164 cd05690 S1_RPS1_repeat_ec5 S1_ 98.0 6.4E-06 1.4E-10 68.5 3.5 64 648-714 1-69 (69)
165 PRK08582 hypothetical protein; 97.9 8.7E-06 1.9E-10 77.1 4.7 70 645-718 3-76 (139)
166 PHA02858 EIF2a-like PKR inhibi 97.9 2.3E-05 5E-10 64.1 5.7 64 949-1014 16-81 (86)
167 PRK12327 nusA transcription el 97.9 1.9E-05 4.2E-10 86.7 7.1 102 913-1021 85-203 (362)
168 smart00316 S1 Ribosomal protei 97.9 1.4E-05 3E-10 67.0 4.4 67 647-716 2-72 (72)
169 cd05686 S1_pNO40 S1_pNO40: pNO 97.9 1.6E-05 3.5E-10 66.7 4.5 67 646-715 2-72 (73)
170 PRK08563 DNA-directed RNA poly 97.9 3.4E-05 7.4E-10 78.1 7.7 62 948-1010 80-152 (187)
171 PRK08059 general stress protei 97.8 1.9E-05 4.2E-10 73.6 4.7 73 643-718 3-79 (123)
172 PF07250 Glyoxal_oxid_N: Glyox 97.8 0.00014 3.1E-09 75.4 11.4 146 335-485 47-211 (243)
173 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 97.8 2.4E-05 5.3E-10 68.1 4.7 70 645-718 4-81 (86)
174 cd05692 S1_RPS1_repeat_hs4 S1_ 97.8 2E-05 4.4E-10 65.4 4.1 65 648-716 1-69 (69)
175 PRK05807 hypothetical protein; 97.8 2.1E-05 4.6E-10 74.3 4.5 69 645-718 3-75 (136)
176 cd05688 S1_RPS1_repeat_ec3 S1_ 97.8 2.1E-05 4.6E-10 65.1 3.7 64 647-714 1-68 (68)
177 cd05699 S1_Rrp5_repeat_hs7 S1_ 97.8 5.5E-05 1.2E-09 61.2 5.6 62 950-1014 1-67 (72)
178 PRK09202 nusA transcription el 97.8 1.1E-05 2.3E-10 92.1 2.0 111 598-718 87-201 (470)
179 cd05689 S1_RPS1_repeat_ec4 S1_ 97.7 2.8E-05 6.1E-10 65.2 4.0 66 646-714 2-72 (72)
180 cd05685 S1_Tex S1_Tex: The C-t 97.7 3.3E-05 7.2E-10 63.9 4.1 64 648-714 1-68 (68)
181 cd04454 S1_Rrp4_like S1_Rrp4_l 97.7 4.8E-05 1E-09 65.6 4.9 68 646-717 5-76 (82)
182 KOG2838|consensus 97.7 2.9E-05 6.2E-10 77.8 3.8 117 52-168 222-394 (401)
183 PF13854 Kelch_5: Kelch motif 97.7 7.1E-05 1.5E-09 54.9 4.9 34 352-385 1-41 (42)
184 KOG2838|consensus 97.7 4.4E-05 9.5E-10 76.5 4.9 102 48-149 113-220 (401)
185 COG2996 Predicted RNA-bindinin 97.6 0.00025 5.3E-09 72.2 9.4 144 561-722 70-222 (287)
186 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.6 0.00029 6.3E-09 61.0 7.9 61 949-1010 1-72 (88)
187 PF10447 EXOSC1: Exosome compo 97.6 0.00027 5.8E-09 59.6 7.3 60 948-1007 3-82 (82)
188 PRK03987 translation initiatio 97.5 7.4E-05 1.6E-09 78.8 4.4 71 646-718 7-82 (262)
189 cd04472 S1_PNPase S1_PNPase: P 97.5 8.2E-05 1.8E-09 61.5 3.8 64 648-715 1-68 (68)
190 cd05702 S1_Rrp5_repeat_hs11_sc 97.5 9.8E-05 2.1E-09 61.4 3.7 60 648-710 1-66 (70)
191 cd05684 S1_DHX8_helicase S1_DH 97.5 0.0001 2.2E-09 63.0 3.6 67 648-718 1-74 (79)
192 KOG2716|consensus 97.4 0.00039 8.5E-09 70.6 8.1 93 68-161 7-104 (230)
193 PLN00207 polyribonucleotide nu 97.4 0.00011 2.4E-09 88.7 4.9 67 873-940 752-831 (891)
194 PF02214 BTB_2: BTB/POZ domain 97.4 0.00039 8.5E-09 61.7 6.3 86 68-154 1-94 (94)
195 PF07250 Glyoxal_oxid_N: Glyox 97.3 0.0019 4.2E-08 67.1 11.7 119 317-443 75-210 (243)
196 PRK12328 nusA transcription el 97.3 0.00013 2.9E-09 79.4 3.2 102 913-1021 89-209 (374)
197 TIGR01640 F_box_assoc_1 F-box 97.3 0.012 2.5E-07 62.2 17.2 150 334-483 14-188 (230)
198 cd04453 S1_RNase_E S1_RNase_E: 97.2 0.00034 7.3E-09 60.8 4.3 71 644-717 4-83 (88)
199 cd00164 S1_like S1_like: Ribos 97.2 0.0002 4.4E-09 58.4 2.8 61 651-714 1-65 (65)
200 COG1096 Predicted RNA-binding 97.2 0.0014 2.9E-08 63.4 8.6 69 947-1016 62-140 (188)
201 cd04471 S1_RNase_R S1_RNase_R: 97.2 0.00035 7.5E-09 60.4 4.2 66 648-715 2-82 (83)
202 cd04473 S1_RecJ_like S1_RecJ_l 97.2 0.00051 1.1E-08 58.2 4.8 68 640-715 9-76 (77)
203 PF03089 RAG2: Recombination a 97.2 0.014 3E-07 60.0 15.3 145 320-464 39-229 (337)
204 TIGR00757 RNaseEG ribonuclease 97.1 0.00089 1.9E-08 75.7 7.2 59 948-1006 24-96 (414)
205 KOG2916|consensus 97.1 0.00036 7.9E-09 70.0 3.5 71 944-1014 9-83 (304)
206 PRK05054 exoribonuclease II; P 97.1 0.00092 2E-08 80.7 7.8 72 944-1015 554-640 (644)
207 PF07893 DUF1668: Protein of u 97.0 0.045 9.7E-07 61.2 19.8 120 364-484 75-221 (342)
208 PRK09521 exosome complex RNA-b 97.0 0.0019 4.1E-08 65.4 8.0 72 642-718 59-143 (189)
209 TIGR02696 pppGpp_PNP guanosine 97.0 0.0007 1.5E-08 80.2 5.4 67 644-714 644-718 (719)
210 KOG1856|consensus 97.0 0.00091 2E-08 80.4 5.5 68 947-1014 983-1053(1299)
211 cd05699 S1_Rrp5_repeat_hs7 S1_ 96.9 0.0014 2.9E-08 53.3 4.8 66 648-716 1-72 (72)
212 PTZ00162 DNA-directed RNA poly 96.9 0.0026 5.6E-08 63.0 7.4 60 950-1010 82-153 (176)
213 COG2183 Tex Transcriptional ac 96.9 0.00068 1.5E-08 79.6 3.8 78 638-718 649-730 (780)
214 TIGR00448 rpoE DNA-directed RN 96.9 0.0024 5.2E-08 64.0 7.2 69 646-718 80-168 (179)
215 KOG3473|consensus 96.9 0.0032 6.9E-08 53.0 6.4 79 68-147 19-112 (112)
216 PRK12329 nusA transcription el 96.8 0.003 6.5E-08 70.0 8.0 68 948-1021 151-228 (449)
217 PF11822 DUF3342: Domain of un 96.8 0.00058 1.3E-08 72.3 1.8 89 75-163 14-105 (317)
218 PRK11824 polynucleotide phosph 96.7 0.0013 2.9E-08 79.9 4.4 72 643-718 617-692 (693)
219 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.6 0.01 2.2E-07 50.8 7.8 67 948-1015 5-72 (86)
220 TIGR01953 NusA transcription t 96.5 0.0044 9.6E-08 68.0 6.7 113 512-631 75-203 (341)
221 TIGR02062 RNase_B exoribonucle 96.5 0.0042 9.2E-08 74.9 7.0 72 944-1015 550-636 (639)
222 COG1097 RRP4 RNA-binding prote 96.5 0.0065 1.4E-07 61.5 7.1 75 950-1024 65-144 (239)
223 KOG3409|consensus 96.5 0.0057 1.2E-07 57.6 6.1 73 949-1021 68-151 (193)
224 KOG1987|consensus 96.5 0.0013 2.8E-08 72.6 2.3 119 74-192 109-231 (297)
225 COG1107 Archaea-specific RecJ- 96.5 0.0016 3.4E-08 73.0 2.7 69 941-1015 114-182 (715)
226 PRK12327 nusA transcription el 96.4 0.0057 1.2E-07 67.5 6.5 70 559-630 127-204 (362)
227 TIGR01640 F_box_assoc_1 F-box 96.4 0.089 1.9E-06 55.5 15.4 129 333-463 69-216 (230)
228 cd04460 S1_RpoE S1_RpoE: RpoE, 96.4 0.0028 6.1E-08 56.7 3.2 65 650-718 2-86 (99)
229 PRK04163 exosome complex RNA-b 96.1 0.006 1.3E-07 63.9 4.5 68 646-717 62-137 (235)
230 COG0557 VacB Exoribonuclease R 96.0 0.01 2.3E-07 72.9 6.9 72 943-1014 616-699 (706)
231 PRK11138 outer membrane biogen 96.0 0.26 5.6E-06 56.7 17.9 150 315-479 65-232 (394)
232 smart00512 Skp1 Found in Skp1 96.0 0.014 2.9E-07 52.8 5.7 79 68-147 4-104 (104)
233 PF07893 DUF1668: Protein of u 96.0 0.15 3.3E-06 57.0 15.2 113 319-441 76-217 (342)
234 PF13360 PQQ_2: PQQ-like domai 95.9 0.83 1.8E-05 48.1 20.1 144 318-476 35-197 (238)
235 PF13509 S1_2: S1 domain; PDB: 95.8 0.038 8.2E-07 44.2 6.8 52 950-1010 2-53 (61)
236 PRK08563 DNA-directed RNA poly 95.7 0.03 6.4E-07 56.8 7.6 69 646-718 80-168 (187)
237 PF13360 PQQ_2: PQQ-like domai 95.7 0.9 2E-05 47.9 19.3 138 335-484 4-154 (238)
238 TIGR03591 polynuc_phos polyrib 95.5 0.0088 1.9E-07 72.7 3.5 65 644-712 615-683 (684)
239 COG1095 RPB7 DNA-directed RNA 95.5 0.014 3.1E-07 56.5 3.9 69 647-719 81-169 (183)
240 PF03089 RAG2: Recombination a 95.4 0.13 2.8E-06 53.2 10.6 73 391-463 81-173 (337)
241 KOG1067|consensus 95.4 0.016 3.4E-07 64.8 4.2 66 870-936 664-741 (760)
242 PRK11138 outer membrane biogen 94.7 1.2 2.6E-05 51.2 17.8 146 318-478 119-282 (394)
243 PRK12328 nusA transcription el 94.6 0.068 1.5E-06 58.7 6.5 66 563-630 137-210 (374)
244 KOG2714|consensus 94.5 0.072 1.6E-06 58.2 6.4 84 68-152 13-102 (465)
245 PRK11642 exoribonuclease R; Pr 94.5 0.038 8.3E-07 68.4 4.8 70 646-717 642-726 (813)
246 cd05791 S1_CSL4 S1_CSL4: CSL4, 94.3 0.049 1.1E-06 47.7 3.9 69 646-717 5-86 (92)
247 COG1185 Pnp Polyribonucleotide 94.3 0.047 1E-06 63.6 4.7 62 871-933 616-689 (692)
248 TIGR03300 assembly_YfgL outer 94.3 1.9 4E-05 49.3 18.0 146 316-479 62-217 (377)
249 KOG1724|consensus 94.1 0.097 2.1E-06 50.7 5.7 90 72-163 12-128 (162)
250 TIGR03300 assembly_YfgL outer 94.1 2.2 4.8E-05 48.7 18.1 144 318-478 144-305 (377)
251 PF03931 Skp1_POZ: Skp1 family 94.0 0.19 4.1E-06 40.4 6.4 56 68-125 3-59 (62)
252 PF12768 Rax2: Cortical protei 93.9 0.76 1.6E-05 49.4 12.5 103 333-440 15-130 (281)
253 PRK12329 nusA transcription el 93.8 0.091 2E-06 58.6 5.5 68 563-630 151-229 (449)
254 TIGR02063 RNase_R ribonuclease 93.6 0.067 1.5E-06 66.1 4.6 68 646-715 626-708 (709)
255 TIGR00358 3_prime_RNase VacB a 93.2 0.087 1.9E-06 64.2 4.7 68 646-715 571-653 (654)
256 COG1107 Archaea-specific RecJ- 93.2 0.24 5.3E-06 56.2 7.5 144 870-1021 118-285 (715)
257 KOG1665|consensus 93.1 0.25 5.5E-06 48.9 6.7 89 67-156 10-105 (302)
258 PHA02858 EIF2a-like PKR inhibi 93.0 0.15 3.3E-06 42.3 4.3 67 645-715 14-85 (86)
259 cd04462 S1_RNAPII_Rpb7 S1_RNAP 92.6 0.13 2.9E-06 44.5 3.7 59 647-709 1-74 (88)
260 PF12768 Rax2: Cortical protei 92.5 1.5 3.2E-05 47.2 12.2 102 377-481 17-130 (281)
261 PRK10811 rne ribonuclease E; R 92.5 0.26 5.7E-06 59.9 7.0 59 948-1006 37-106 (1068)
262 PRK13684 Ycf48-like protein; P 91.8 4.2 9.2E-05 45.4 15.5 136 335-480 153-296 (334)
263 PRK11712 ribonuclease G; Provi 91.2 0.41 8.9E-06 55.5 6.7 68 948-1015 37-120 (489)
264 PF08292 RNA_pol_Rbc25: RNA po 91.2 0.94 2E-05 41.8 7.7 67 949-1015 3-82 (122)
265 PF05096 Glu_cyclase_2: Glutam 91.2 1.6 3.4E-05 45.9 10.3 104 319-432 55-158 (264)
266 PF13509 S1_2: S1 domain; PDB: 90.9 0.39 8.4E-06 38.4 4.3 55 874-932 1-61 (61)
267 COG1096 Predicted RNA-binding 90.8 0.85 1.8E-05 44.6 7.2 92 516-613 22-134 (188)
268 KOG2715|consensus 90.7 0.46 1E-05 44.9 5.2 99 63-161 18-121 (210)
269 TIGR03866 PQQ_ABC_repeats PQQ- 90.7 6.7 0.00015 42.5 15.7 100 321-434 2-106 (300)
270 PTZ00162 DNA-directed RNA poly 90.6 0.27 5.7E-06 48.9 3.9 67 647-717 81-165 (176)
271 COG5201 SKP1 SCF ubiquitin lig 90.3 0.83 1.8E-05 41.1 6.1 96 67-164 3-124 (158)
272 KOG2055|consensus 90.3 3.5 7.6E-05 45.8 12.1 132 322-468 272-412 (514)
273 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.1 7.5 0.00016 46.4 16.2 119 314-438 64-198 (527)
274 PF05096 Glu_cyclase_2: Glutam 89.8 4 8.7E-05 43.0 11.8 106 361-473 50-158 (264)
275 KOG0511|consensus 89.4 0.12 2.6E-06 55.2 0.3 85 66-151 150-235 (516)
276 PF07707 BACK: BTB And C-termi 89.1 0.47 1E-05 42.6 4.0 81 135-215 1-102 (103)
277 KOG0310|consensus 88.9 17 0.00036 41.0 16.1 145 318-481 121-275 (487)
278 KOG1036|consensus 88.9 8.2 0.00018 40.9 13.0 101 321-434 66-166 (323)
279 PF08450 SGL: SMP-30/Gluconola 87.8 15 0.00033 38.9 15.3 158 319-492 51-232 (246)
280 cd00216 PQQ_DH Dehydrogenases 87.2 25 0.00053 41.7 17.9 117 315-438 57-192 (488)
281 cd05790 S1_Rrp40 S1_Rrp40: Rrp 87.1 0.72 1.6E-05 39.6 3.5 51 563-614 5-66 (86)
282 KOG3298|consensus 86.8 3 6.4E-05 39.6 7.6 60 950-1010 82-152 (170)
283 PF10447 EXOSC1: Exosome compo 86.5 0.84 1.8E-05 38.7 3.6 57 646-704 3-82 (82)
284 KOG1332|consensus 86.1 7.2 0.00016 39.9 10.4 102 367-481 176-296 (299)
285 TIGR02800 propeller_TolB tol-p 85.8 38 0.00083 39.0 18.5 101 334-439 214-318 (417)
286 PRK05054 exoribonuclease II; P 85.5 0.83 1.8E-05 55.6 4.4 66 648-715 562-643 (644)
287 COG1097 RRP4 RNA-binding prote 85.5 1.6 3.4E-05 44.8 5.6 78 561-655 61-154 (239)
288 cd00200 WD40 WD40 domain, foun 85.4 25 0.00054 37.0 15.7 138 321-471 22-164 (289)
289 PRK11028 6-phosphogluconolacto 85.1 27 0.0006 38.8 16.3 142 321-471 3-155 (330)
290 KOG2055|consensus 84.6 8.8 0.00019 42.8 11.0 145 320-473 225-375 (514)
291 PTZ00421 coronin; Provisional 84.4 59 0.0013 38.5 18.9 106 321-433 139-247 (493)
292 cd00216 PQQ_DH Dehydrogenases 84.4 33 0.00071 40.7 17.1 140 334-479 256-433 (488)
293 PF01466 Skp1: Skp1 family, di 84.1 1.2 2.5E-05 37.8 3.4 41 130-170 11-51 (78)
294 KOG1856|consensus 84.0 0.72 1.6E-05 56.7 2.8 84 638-724 976-1066(1299)
295 KOG0316|consensus 83.9 28 0.00061 35.6 13.2 130 334-471 39-172 (307)
296 PF03178 CPSF_A: CPSF A subuni 83.9 15 0.00032 40.8 13.3 120 334-459 62-188 (321)
297 TIGR03866 PQQ_ABC_repeats PQQ- 82.9 39 0.00085 36.4 16.1 102 320-434 43-148 (300)
298 KOG2916|consensus 82.7 1.4 3E-05 45.1 3.8 71 646-718 15-90 (304)
299 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.0 22 0.00048 42.4 14.3 114 359-479 63-198 (527)
300 PLN00033 photosystem II stabil 81.7 61 0.0013 37.0 17.0 108 365-480 249-364 (398)
301 KOG0649|consensus 81.6 43 0.00094 34.4 13.6 130 319-464 126-265 (325)
302 PRK12442 translation initiatio 81.4 6.1 0.00013 33.6 6.5 61 951-1015 7-68 (87)
303 PF14870 PSII_BNR: Photosynthe 80.7 57 0.0012 35.6 15.6 148 335-490 125-282 (302)
304 KOG1036|consensus 80.4 32 0.0007 36.6 12.8 129 334-472 35-163 (323)
305 PRK04792 tolB translocation pr 80.3 52 0.0011 38.5 16.5 101 334-439 242-346 (448)
306 TIGR00008 infA translation ini 79.9 9.4 0.0002 31.1 6.9 60 952-1015 6-66 (68)
307 cd00200 WD40 WD40 domain, foun 79.8 50 0.0011 34.6 15.4 136 321-471 106-248 (289)
308 PF10246 MRP-S35: Mitochondria 79.4 4.9 0.00011 35.2 5.4 67 940-1014 15-81 (104)
309 TIGR00757 RNaseEG ribonuclease 79.4 2.4 5.2E-05 48.4 4.8 49 562-611 23-97 (414)
310 COG1520 FOG: WD40-like repeat 79.1 77 0.0017 35.9 17.2 141 335-481 122-279 (370)
311 KOG3840|consensus 78.6 25 0.00054 37.1 11.2 82 67-148 97-185 (438)
312 PF09910 DUF2139: Uncharacteri 78.5 1E+02 0.0022 33.1 16.0 122 333-461 77-220 (339)
313 PF10246 MRP-S35: Mitochondria 78.4 2.5 5.5E-05 36.8 3.5 51 563-614 22-77 (104)
314 COG1520 FOG: WD40-like repeat 77.9 54 0.0012 37.2 15.4 114 361-482 64-183 (370)
315 PRK05137 tolB translocation pr 77.8 1E+02 0.0022 35.9 18.0 102 334-440 226-331 (435)
316 PRK13684 Ycf48-like protein; P 77.7 27 0.00058 39.0 12.5 129 343-479 118-251 (334)
317 smart00284 OLF Olfactomedin-li 77.7 61 0.0013 34.3 14.1 139 319-461 34-192 (255)
318 PF00313 CSD: 'Cold-shock' DNA 77.2 16 0.00035 29.6 7.9 54 953-1011 1-57 (66)
319 PF02191 OLF: Olfactomedin-lik 76.9 20 0.00044 38.0 10.5 139 318-462 29-188 (250)
320 PF03178 CPSF_A: CPSF A subuni 76.9 59 0.0013 36.0 15.0 102 376-484 62-171 (321)
321 KOG1778|consensus 76.8 0.95 2.1E-05 49.1 0.6 133 69-202 30-166 (319)
322 PRK00178 tolB translocation pr 76.7 82 0.0018 36.5 16.9 102 333-439 222-327 (430)
323 PLN03215 ascorbic acid mannose 76.4 1.2E+02 0.0026 34.2 16.6 96 343-442 189-305 (373)
324 PRK11028 6-phosphogluconolacto 75.8 1.1E+02 0.0024 33.9 17.0 144 319-471 46-204 (330)
325 PRK04922 tolB translocation pr 75.8 1.3E+02 0.0029 34.8 18.3 102 333-439 227-332 (433)
326 PF08450 SGL: SMP-30/Gluconola 75.0 18 0.00039 38.3 9.9 85 365-460 11-102 (246)
327 PTZ00420 coronin; Provisional 74.3 1E+02 0.0023 37.0 16.7 104 321-432 139-249 (568)
328 smart00284 OLF Olfactomedin-li 73.8 87 0.0019 33.2 14.0 127 331-461 91-242 (255)
329 COG1530 CafA Ribonucleases G a 73.2 4.4 9.6E-05 47.4 4.9 62 946-1008 34-102 (487)
330 KOG0310|consensus 73.1 87 0.0019 35.6 14.3 133 318-466 164-302 (487)
331 PLN00181 protein SPA1-RELATED; 72.1 67 0.0015 40.8 15.6 89 335-433 556-650 (793)
332 KOG0289|consensus 71.8 91 0.002 34.9 13.8 112 334-454 369-485 (506)
333 PF03459 TOBE: TOBE domain; I 71.4 12 0.00025 30.1 5.6 55 950-1014 4-64 (64)
334 PLN00033 photosystem II stabil 69.6 2.1E+02 0.0046 32.7 18.7 148 319-477 146-314 (398)
335 TIGR02062 RNase_B exoribonucle 69.3 4.6 0.0001 49.1 4.1 65 648-714 558-638 (639)
336 PF08268 FBA_3: F-box associat 69.1 34 0.00073 32.1 9.1 78 362-439 2-88 (129)
337 PF08292 RNA_pol_Rbc25: RNA po 68.6 7 0.00015 36.2 4.2 49 564-613 3-76 (122)
338 cd00094 HX Hemopexin-like repe 68.6 1.4E+02 0.003 30.3 15.8 135 319-473 16-176 (194)
339 PRK00178 tolB translocation pr 68.4 1E+02 0.0022 35.7 15.1 102 334-440 267-372 (430)
340 PLN00181 protein SPA1-RELATED; 67.6 86 0.0019 39.8 15.2 61 365-432 629-691 (793)
341 KOG0266|consensus 67.6 1.1E+02 0.0024 35.8 15.1 94 334-434 225-321 (456)
342 TIGR02658 TTQ_MADH_Hv methylam 67.6 1.2E+02 0.0027 33.9 14.4 137 320-464 13-167 (352)
343 KOG0291|consensus 67.4 1.7E+02 0.0038 35.3 15.6 155 317-483 359-518 (893)
344 PF14870 PSII_BNR: Photosynthe 67.3 1.2E+02 0.0026 33.2 13.9 147 319-478 71-223 (302)
345 cd05700 S1_Rrp5_repeat_hs9 S1_ 67.0 21 0.00046 27.8 5.6 59 950-1012 1-59 (65)
346 TIGR03074 PQQ_membr_DH membran 67.0 1.8E+02 0.0039 36.5 17.0 118 314-438 189-353 (764)
347 PRK04792 tolB translocation pr 65.3 2.7E+02 0.0059 32.5 18.4 141 333-479 197-345 (448)
348 PTZ00421 coronin; Provisional 65.0 1.5E+02 0.0032 35.1 15.3 62 366-434 138-201 (493)
349 KOG0316|consensus 64.4 59 0.0013 33.4 9.8 95 334-435 81-177 (307)
350 PRK04922 tolB translocation pr 64.1 2.6E+02 0.0057 32.4 17.3 101 334-440 272-377 (433)
351 PF02191 OLF: Olfactomedin-lik 63.9 2E+02 0.0044 30.5 15.1 128 331-462 86-238 (250)
352 KOG0289|consensus 63.6 96 0.0021 34.8 12.0 122 356-485 348-475 (506)
353 KOG0278|consensus 63.4 1.8E+02 0.0039 30.3 13.0 128 332-469 163-293 (334)
354 PRK03629 tolB translocation pr 63.1 2.6E+02 0.0056 32.4 16.9 102 334-439 223-327 (429)
355 PLN02919 haloacid dehalogenase 62.9 2.2E+02 0.0047 37.4 17.5 103 366-473 752-889 (1057)
356 KOG2321|consensus 62.6 52 0.0011 38.1 10.1 105 321-434 147-261 (703)
357 COG4044 Uncharacterized protei 61.9 18 0.00038 36.0 5.5 69 941-1009 67-147 (247)
358 smart00875 BACK BTB And C-term 61.7 8 0.00017 34.1 3.2 26 136-161 2-27 (101)
359 cd00094 HX Hemopexin-like repe 61.3 1E+02 0.0022 31.2 11.6 98 320-434 63-178 (194)
360 PF08268 FBA_3: F-box associat 60.2 50 0.0011 30.9 8.5 75 317-391 3-87 (129)
361 COG4257 Vgb Streptogramin lyas 59.4 1.5E+02 0.0033 31.4 12.0 130 361-497 195-329 (353)
362 PRK06763 F0F1 ATP synthase sub 57.8 1.1E+02 0.0024 30.5 10.2 117 876-1006 40-177 (213)
363 COG4257 Vgb Streptogramin lyas 57.2 1.5E+02 0.0032 31.5 11.4 100 334-439 210-313 (353)
364 KOG2723|consensus 55.8 28 0.00061 35.7 6.1 94 65-159 7-107 (221)
365 COG0557 VacB Exoribonuclease R 55.6 12 0.00026 46.5 4.2 70 645-716 620-704 (706)
366 KOG4649|consensus 54.7 2.4E+02 0.0052 29.7 12.3 116 333-461 32-154 (354)
367 PRK05137 tolB translocation pr 54.3 3.6E+02 0.0078 31.3 16.2 105 333-442 181-289 (435)
368 PRK10943 cold shock-like prote 54.1 49 0.0011 27.1 6.3 51 952-1006 3-56 (69)
369 TIGR02800 propeller_TolB tol-p 53.3 4E+02 0.0086 30.5 16.6 62 376-441 214-276 (417)
370 PF11822 DUF3342: Domain of un 53.3 11 0.00024 40.7 2.9 54 161-214 71-125 (317)
371 PRK02889 tolB translocation pr 51.7 4.4E+02 0.0095 30.5 16.3 101 334-439 220-324 (427)
372 KOG0649|consensus 51.4 2.8E+02 0.0061 28.8 12.1 133 343-483 98-246 (325)
373 PRK09507 cspE cold shock prote 51.0 62 0.0013 26.6 6.4 52 951-1006 2-56 (69)
374 PRK15464 cold shock-like prote 50.8 57 0.0012 26.9 6.1 50 953-1006 5-57 (70)
375 KOG1332|consensus 50.1 1.3E+02 0.0029 31.2 9.7 102 321-440 176-296 (299)
376 KOG0640|consensus 49.7 1.2E+02 0.0025 32.6 9.4 94 333-434 237-338 (430)
377 KOG4350|consensus 49.6 13 0.00028 40.7 2.7 159 87-270 92-264 (620)
378 PRK04043 tolB translocation pr 49.4 4.4E+02 0.0095 30.4 15.5 102 334-440 213-318 (419)
379 KOG3297|consensus 49.2 33 0.00071 33.5 5.0 59 949-1009 81-158 (202)
380 COG0361 InfA Translation initi 49.1 74 0.0016 26.5 6.4 62 950-1015 6-68 (75)
381 KOG0315|consensus 49.0 2.1E+02 0.0045 29.9 10.8 108 319-437 51-160 (311)
382 KOG0291|consensus 48.8 4.2E+02 0.0092 32.3 14.7 124 333-464 329-456 (893)
383 COG1545 Predicted nucleic-acid 48.7 58 0.0012 31.1 6.7 58 950-1014 64-130 (140)
384 KOG1004|consensus 48.1 68 0.0015 32.3 7.1 59 950-1010 66-125 (230)
385 PRK15463 cold shock-like prote 47.6 69 0.0015 26.4 6.1 50 953-1006 5-57 (70)
386 KOG0286|consensus 47.6 3.6E+02 0.0078 29.0 12.5 127 336-468 79-212 (343)
387 PRK01742 tolB translocation pr 47.1 5.1E+02 0.011 30.0 16.2 136 334-479 228-368 (429)
388 PRK09937 stationary phase/star 45.5 76 0.0016 26.5 6.1 51 954-1008 3-56 (74)
389 PF10282 Lactonase: Lactonase, 45.4 4.8E+02 0.01 29.1 23.1 144 324-473 3-175 (345)
390 KOG0278|consensus 45.3 1.2E+02 0.0025 31.6 8.4 82 335-419 206-290 (334)
391 TIGR00638 Mop molybdenum-pteri 45.3 29 0.00063 28.2 3.7 54 950-1013 6-65 (69)
392 PF07076 DUF1344: Protein of u 44.7 1E+02 0.0022 24.6 6.1 52 952-1011 4-55 (61)
393 KOG4078|consensus 44.3 38 0.00082 31.3 4.4 58 950-1014 83-140 (173)
394 PF13570 PQQ_3: PQQ-like domai 44.1 39 0.00084 24.0 3.8 26 359-385 15-40 (40)
395 KOG2048|consensus 43.8 3.6E+02 0.0079 32.2 13.1 123 336-465 178-311 (691)
396 PF12217 End_beta_propel: Cata 43.8 2.9E+02 0.0063 29.0 11.0 130 333-462 101-257 (367)
397 KOG0279|consensus 43.7 1.8E+02 0.0038 30.9 9.6 69 359-434 197-265 (315)
398 cd04322 LysRS_N LysRS_N: N-ter 43.6 35 0.00076 30.8 4.3 52 952-1003 3-59 (108)
399 KOG3298|consensus 43.4 32 0.0007 32.9 4.0 28 647-676 81-108 (170)
400 PF03459 TOBE: TOBE domain; I 41.6 27 0.0006 27.9 3.0 44 567-610 6-59 (64)
401 COG3823 Glutamine cyclotransfe 41.5 4.1E+02 0.0088 27.2 12.0 139 319-461 55-247 (262)
402 KOG0296|consensus 41.4 5.3E+02 0.012 28.6 15.3 129 319-462 75-209 (399)
403 PTZ00420 coronin; Provisional 41.2 5.2E+02 0.011 31.2 14.7 62 366-434 138-200 (568)
404 cd05793 S1_IF1A S1_IF1A: Trans 41.2 1.6E+02 0.0034 24.9 7.4 58 953-1015 2-60 (77)
405 PF14781 BBS2_N: Ciliary BBSom 40.1 1.7E+02 0.0036 27.6 8.0 65 409-479 65-134 (136)
406 PF01938 TRAM: TRAM domain; I 39.8 1.5E+02 0.0034 23.3 7.0 54 947-1012 2-56 (61)
407 PF08662 eIF2A: Eukaryotic tra 39.4 1.9E+02 0.0041 29.3 9.4 73 365-444 71-144 (194)
408 PRK04012 translation initiatio 39.4 1.8E+02 0.0038 26.0 7.7 61 950-1015 20-81 (100)
409 PLN03215 ascorbic acid mannose 39.3 5.6E+02 0.012 29.0 13.5 83 368-462 175-264 (373)
410 PLN02919 haloacid dehalogenase 39.1 3.1E+02 0.0067 36.0 13.4 65 365-434 814-891 (1057)
411 PRK10354 RNA chaperone/anti-te 38.7 1.1E+02 0.0024 25.2 6.1 49 953-1006 5-57 (70)
412 PRK11712 ribonuclease G; Provi 38.6 41 0.00089 39.4 4.8 51 562-613 36-112 (489)
413 PRK14998 cold shock-like prote 38.6 1.1E+02 0.0023 25.5 6.0 52 954-1009 3-57 (73)
414 TIGR03074 PQQ_membr_DH membran 38.2 5.4E+02 0.012 32.3 14.6 35 359-394 188-224 (764)
415 PF09883 DUF2110: Uncharacteri 38.2 38 0.00082 34.2 3.8 76 941-1018 67-148 (225)
416 PRK04043 tolB translocation pr 38.1 6.8E+02 0.015 28.9 18.4 105 333-441 256-367 (419)
417 PRK09890 cold shock protein Cs 38.1 1.3E+02 0.0028 24.8 6.3 50 953-1006 5-57 (70)
418 KOG0296|consensus 37.8 3.2E+02 0.0069 30.2 10.7 69 365-438 75-145 (399)
419 KOG3409|consensus 37.5 50 0.0011 32.0 4.3 37 670-708 98-140 (193)
420 PF11813 DUF3334: Protein of u 37.0 23 0.0005 35.2 2.0 19 961-979 48-66 (229)
421 PF08662 eIF2A: Eukaryotic tra 35.8 2.5E+02 0.0054 28.4 9.6 89 319-415 71-162 (194)
422 KOG0272|consensus 34.9 4.4E+02 0.0095 29.8 11.4 111 318-442 313-427 (459)
423 cd04458 CSP_CDS Cold-Shock Pro 34.9 1.3E+02 0.0027 24.1 5.9 49 954-1007 2-54 (65)
424 TIGR02381 cspD cold shock doma 34.5 1E+02 0.0022 25.2 5.3 49 954-1006 3-54 (68)
425 KOG4134|consensus 33.9 32 0.00069 34.7 2.5 69 948-1021 106-174 (253)
426 cd05700 S1_Rrp5_repeat_hs9 S1_ 33.6 72 0.0016 25.0 3.7 28 686-715 38-65 (65)
427 PF08402 TOBE_2: TOBE domain; 33.1 2.2E+02 0.0047 23.0 7.4 55 950-1013 15-73 (75)
428 PRK02889 tolB translocation pr 32.5 8.3E+02 0.018 28.2 15.7 103 333-440 175-281 (427)
429 KOG2445|consensus 32.3 5.5E+02 0.012 27.8 11.2 102 341-442 97-220 (361)
430 KOG0772|consensus 31.6 3.6E+02 0.0078 31.2 10.3 109 361-474 371-489 (641)
431 PF13088 BNR_2: BNR repeat-lik 31.3 2.6E+02 0.0056 29.8 9.6 124 335-459 135-275 (275)
432 KOG0318|consensus 31.0 2E+02 0.0043 33.2 8.2 90 365-463 454-550 (603)
433 KOG2321|consensus 30.6 2.1E+02 0.0045 33.5 8.4 72 396-473 132-205 (703)
434 PRK10811 rne ribonuclease E; R 30.6 45 0.00098 41.6 3.5 61 646-709 37-112 (1068)
435 COG4447 Uncharacterized protei 30.6 2.2E+02 0.0047 30.4 7.8 143 335-484 149-301 (339)
436 KOG0263|consensus 30.2 3.1E+02 0.0066 33.3 10.0 60 365-431 588-649 (707)
437 KOG0308|consensus 29.9 1.9E+02 0.0041 34.3 8.1 94 335-434 96-204 (735)
438 PF14781 BBS2_N: Ciliary BBSom 29.7 2.7E+02 0.0058 26.3 7.6 63 366-438 64-134 (136)
439 KOG1517|consensus 28.7 8.5E+02 0.018 31.2 13.4 153 319-484 1177-1345(1387)
440 KOG3545|consensus 28.3 7.2E+02 0.016 26.2 11.5 138 319-462 30-187 (249)
441 KOG0266|consensus 28.3 1E+03 0.022 27.8 15.1 139 319-468 257-404 (456)
442 cd04318 EcAsnRS_like_N EcAsnRS 28.1 1.6E+02 0.0034 24.9 5.7 48 952-1003 3-57 (82)
443 cd04316 ND_PkAspRS_like_N ND_P 27.5 1.1E+02 0.0024 27.5 4.9 51 952-1003 16-71 (108)
444 PF09910 DUF2139: Uncharacteri 27.0 8.4E+02 0.018 26.5 13.1 123 347-477 26-186 (339)
445 KOG0285|consensus 26.8 6.2E+02 0.013 28.0 10.6 134 321-471 248-387 (460)
446 KOG0263|consensus 26.7 3.9E+02 0.0083 32.5 10.0 101 361-469 541-645 (707)
447 KOG0646|consensus 26.4 4.7E+02 0.01 29.9 10.0 126 359-490 85-224 (476)
448 KOG0639|consensus 26.1 2E+02 0.0044 32.9 7.2 105 318-433 475-583 (705)
449 KOG4078|consensus 26.1 89 0.0019 29.0 3.7 53 561-614 79-136 (173)
450 KOG0308|consensus 25.4 9.9E+02 0.021 28.8 12.6 66 318-387 128-204 (735)
451 TIGR02658 TTQ_MADH_Hv methylam 25.2 9.4E+02 0.02 27.0 12.5 117 367-485 14-149 (352)
452 KOG0647|consensus 25.1 7.6E+02 0.016 26.8 10.7 130 321-463 85-218 (347)
453 PF08206 OB_RNB: Ribonuclease 25.0 2.6E+02 0.0056 21.9 5.9 49 955-1013 1-50 (58)
454 PF10282 Lactonase: Lactonase, 25.0 9.8E+02 0.021 26.6 19.3 155 319-479 48-231 (345)
455 cd05701 S1_Rrp5_repeat_hs10 S1 23.9 1.2E+02 0.0025 24.3 3.4 56 953-1009 4-61 (69)
456 PF02599 CsrA: Global regulato 23.6 73 0.0016 24.7 2.3 26 990-1015 8-33 (54)
457 PF13859 BNR_3: BNR repeat-lik 22.7 7E+02 0.015 27.4 10.7 130 357-486 61-220 (310)
458 KOG0315|consensus 22.7 3.8E+02 0.0083 28.1 7.8 94 367-468 11-108 (311)
459 KOG3881|consensus 22.5 1.1E+03 0.024 26.4 12.1 106 320-434 161-280 (412)
460 PF08605 Rad9_Rad53_bind: Fung 22.4 1.3E+02 0.0028 28.3 4.3 45 951-1003 23-69 (131)
461 COG3269 Predicted RNA-binding 22.0 4.4E+02 0.0095 22.0 6.5 49 948-1010 14-62 (73)
462 PF07076 DUF1344: Protein of u 21.5 68 0.0015 25.5 1.8 23 998-1020 3-25 (61)
463 KOG1523|consensus 21.0 8.5E+02 0.018 26.6 10.2 98 333-435 31-136 (361)
464 PF06433 Me-amine-dh_H: Methyl 20.8 9.8E+02 0.021 26.6 11.1 139 321-469 4-162 (342)
465 PF00651 BTB: BTB/POZ domain; 20.8 91 0.002 27.8 3.0 31 163-193 80-110 (111)
466 cd04319 PhAsnRS_like_N PhAsnRS 20.6 1.9E+02 0.0042 25.7 5.0 50 952-1003 3-57 (103)
467 KOG1004|consensus 20.3 1.3E+02 0.0028 30.4 3.9 52 562-614 63-125 (230)
468 COG3386 Gluconolactonase [Carb 20.3 1.2E+03 0.025 25.7 13.2 123 332-462 141-275 (307)
469 COG4946 Uncharacterized protei 20.1 5.2E+02 0.011 29.6 8.8 100 334-443 206-308 (668)
No 1
>KOG4441|consensus
Probab=100.00 E-value=3.2e-82 Score=739.65 Aligned_cols=442 Identities=49% Similarity=0.877 Sum_probs=416.8
Q ss_pred CCCCCccccCchHHHHHHHHHHHhcCCCccEEEEECCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHH
Q psy9769 38 REKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNAL 116 (1026)
Q Consensus 38 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f 116 (1026)
.....+.+..|+..+++.|+.|+..+.+|||++.+++++|+|||.|||++|+||++||+ +++|+.+.+|.+.++++.++
T Consensus 9 ~~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l 88 (571)
T KOG4441|consen 9 NSTSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDPETL 88 (571)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCHHHH
Confidence 44457889999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHhhheecceeeechhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhh
Q psy9769 117 KLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAE 196 (1026)
Q Consensus 117 ~~~l~~~Ytg~~~i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~ 196 (1026)
+.+++|+||+++.|+.+|+.+||.+|++||++.+.++|.+||..+++++||+.+..+|+.|++.+|.+.+..|+.+||.+
T Consensus 89 ~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~ 168 (571)
T KOG4441|consen 89 ELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAE 168 (571)
T ss_pred HHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCHhhHhceeccccccccchhhHHHHHHHHHhcChhHHHHHHHHHHhhcccCCCCHHHHHhhccccceecc
Q psy9769 197 IVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKN 276 (1026)
Q Consensus 197 l~~~~~f~~L~~~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~vr~~~l~~~~l~~~~~~~~l~~~ 276 (1026)
+.++++|+.||.+.|..+|+++.|++.+|.+||+++++|++++.+.|..++++++++||+++|++.+|.+.+...++++.
T Consensus 169 v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~~~~ 248 (571)
T KOG4441|consen 169 VSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPLIKR 248 (571)
T ss_pred HhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccchhhHHHHhheeeeeeccccceeeeeccCCCCCCCCccCCcEEEEEcCCCC--CCCcEEEEEECCCCcEEEcCCCCc
Q psy9769 277 DIRCKDYLIEALKYHILVKKGEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAP--KAIRSVECYDFKTERWQSVAEMPT 354 (1026)
Q Consensus 277 ~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~--~~~~~~~~yd~~~~~W~~~~~~p~ 354 (1026)
...|.+++.+|+.||+. +..+ ..++.|++++|. ...+.||++||..+ ...+.+++|||.++.|..+++||.
T Consensus 249 ~~~c~~~l~ea~~~~~~---~~~~--~~~~~~~t~~r~--~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~ 321 (571)
T KOG4441|consen 249 DSACRDLLDEAKKYHLL---PQRR--PVMQSPRTRPRR--SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS 321 (571)
T ss_pred CHHHHHHHHHHHHHhhC---cccC--ccccCCCcccCc--CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc
Confidence 99999999999999987 2222 125677887775 45689999999874 678999999999999999999999
Q ss_pred cccceeeEEECCEEEEEeccC-C-----CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEE
Q psy9769 355 RRCRAGLVFLHEKVYAVGGFN-G-----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVY 428 (1026)
Q Consensus 355 ~r~~~~~~~~~~~iyv~GG~~-~-----~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 428 (1026)
+|..+++++++|.||++||++ + ++++||+.+++|+.+++|+.+|..+++++++|.||++||.++...++++|+|
T Consensus 322 ~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 322 PRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEe
Confidence 999999999999999999998 3 6899999999999999999999999999999999999999999999999999
Q ss_pred ECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCC-------ceeeEEcCcccEEEeecCCCcc
Q psy9769 429 DPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDG-------RILGCVKEITDWGLIIELPNFL 486 (1026)
Q Consensus 429 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-------~~~~~~~~~~~W~~~~~lP~~~ 486 (1026)
||.+++|+.+++|+.+|++|++++++++||++||.. .+..||+.+++|+.+++|+..+
T Consensus 402 Dp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 402 DPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR 466 (571)
T ss_pred cCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc
Confidence 999999999999999999999999999999999943 2345788889999999997643
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=6.1e-77 Score=700.48 Aligned_cols=416 Identities=19% Similarity=0.366 Sum_probs=370.7
Q ss_pred ccccCchHHHHHHHHHHHhcCCCccEEEEEC-CEEEEEEhhhhhccChhhHhhhc-CCccCc-ccEEEecCCCHHHHHHH
Q psy9769 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIAD-GVEVAAHKMVLAACSPYFHAMFI-SFEESK-QERIVLKGVDPNALKLL 119 (1026)
Q Consensus 43 ~~~~~~~~~l~~~l~~l~~~~~~~Dv~i~v~-~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~-~~~i~l~~~~~~~f~~~ 119 (1026)
..+..|...+++.|++|++++.+|||+|.++ |++|+|||.|||++|+||++||+ +|+|+. +.+|.|+++++++|+.+
T Consensus 3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l 82 (557)
T PHA02713 3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI 82 (557)
T ss_pred cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence 4567899999999999999999999999998 89999999999999999999999 899864 78999999999999999
Q ss_pred hhheecceeeechhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheec
Q psy9769 120 IDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVE 199 (1026)
Q Consensus 120 l~~~Ytg~~~i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~ 199 (1026)
|+|+|||+ ++.+|+.+||.+|++||++.|+++|++||.++++++||+.++.++..+.+..|.++|.+||.+||.++.+
T Consensus 83 l~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~ 160 (557)
T PHA02713 83 VQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT 160 (557)
T ss_pred HHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC
Confidence 99999997 7899999999999999999999999999999999999999999888899989999999999999999999
Q ss_pred ccccccCCHhhHhceecccc-ccccchhhHHHHHHHHHhcChhHHHHHHHHHHhhcccCCCCHHHHHhhccccceeccCc
Q psy9769 200 CEEFLSLSHEQVLGLISSDK-LMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKNDI 278 (1026)
Q Consensus 200 ~~~f~~L~~~~l~~ll~~~~-l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~vr~~~l~~~~l~~~~~~~~l~~~~~ 278 (1026)
+++|++|+.+.|.+||++|+ |++.+|++||+++++|++|+.+.|.+ +.+||++|||++|++.++. .+...+++..+.
T Consensus 161 ~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~-~~~ll~~VR~~~l~~~~~~-~~~~~~~i~~~~ 238 (557)
T PHA02713 161 TDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQ-LLCILSCIDIQNLDKKSRL-LLYSNKTINMYP 238 (557)
T ss_pred ChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHH-HhhhHhhhhHhhcchhhhh-hhcchHHHHhhH
Confidence 99999999999999999987 79999999999999999999887755 6699999999999998876 566668888888
Q ss_pred cchhhHHHHhheeeeeeccccceeeeeccCCCCCCCCccCCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccc
Q psy9769 279 RCKDYLIEALKYHILVKKGEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCR 358 (1026)
Q Consensus 279 ~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 358 (1026)
.|..++.+++.++. ..+|. ..+++.||........+++||+.+++|..+++||.+|.+
T Consensus 239 ~c~~~l~~a~~~~~-----------------~~~r~-----~~l~~~~g~~~~~~~~v~~yd~~~~~W~~l~~mp~~r~~ 296 (557)
T PHA02713 239 SCIQFLLDNKQNRN-----------------IIPRQ-----LCLVCHDTKYNVCNPCILVYNINTMEYSVISTIPNHIIN 296 (557)
T ss_pred HHHHHHhhhhhhcc-----------------cCCcc-----eEEEEecCccccCCCCEEEEeCCCCeEEECCCCCccccc
Confidence 89998888754321 11221 246666663222335789999999999999999999999
Q ss_pred eeeEEECCEEEEEeccC------CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCC
Q psy9769 359 AGLVFLHEKVYAVGGFN------GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPST 432 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG~~------~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 432 (1026)
+++++++|+||++||.+ +++++||+.+++|..+++||.+|+.+++++++|+||++||.++...++++++|||.+
T Consensus 297 ~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 297 YASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred eEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 99999999999999974 358999999999999999999999999999999999999998777788999999999
Q ss_pred CcEEEccCCCCCcceeEEEEECCEEEEEeCCCc------------------------eeeEEcCcccEEEeecCCC
Q psy9769 433 EKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGR------------------------ILGCVKEITDWGLIIELPN 484 (1026)
Q Consensus 433 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~------------------------~~~~~~~~~~W~~~~~lP~ 484 (1026)
++|+.+++||.+|..+++++++|+||++||... +..||+.+++|+.+++||.
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 999999999999999999999999999999531 3346666677777777655
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=4.5e-67 Score=625.43 Aligned_cols=401 Identities=25% Similarity=0.416 Sum_probs=353.5
Q ss_pred cCCCccEEEEE--CCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhheecceeeechhhHHHH
Q psy9769 62 QNLLCDVKLIA--DGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQML 138 (1026)
Q Consensus 62 ~~~~~Dv~i~v--~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~~l 138 (1026)
++.+|||+|.+ +|++|+|||.||+++|+||++||+ +|+ +.+|.|++ ++++|+.+|+|+|||++.++.+++.+|
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~l 81 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDI 81 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHH
Confidence 88999999998 999999999999999999999999 777 57899999 999999999999999999999999999
Q ss_pred HHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCHhhHhceeccc
Q psy9769 139 LPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSD 218 (1026)
Q Consensus 139 l~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~ll~~~ 218 (1026)
|.+|++|+++.|++.|++||.+.++.+||+.++.+|+.|++..|.+.|.+||.+||.++.++++|.+|+.+.|..+|+++
T Consensus 82 l~~A~~l~~~~l~~~C~~~l~~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~~ 161 (534)
T PHA03098 82 LSIANYLIIDFLINLCINYIIKIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSDD 161 (534)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHhcChhHHHHHHHHHHhhcccCCCCHHHHHhhcc------ccceeccCccchhhHHHHhheee
Q psy9769 219 KLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVE------EETVFKNDIRCKDYLIEALKYHI 292 (1026)
Q Consensus 219 ~l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~vr~~~l~~~~l~~~~~------~~~l~~~~~~~~~~i~~a~~~~~ 292 (1026)
.|++.+|+++|+++++|++++.+.|.+++.+|+++|||++|++++|.+... ..+++ .+..|...+.++..++.
T Consensus 162 ~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 240 (534)
T PHA03098 162 KLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKKYNLN 240 (534)
T ss_pred CcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999987664 45555 56678877777655431
Q ss_pred eeeccccceeeeeccCCCCCCCCccCCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEe
Q psy9769 293 LVKKGEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVG 372 (1026)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~G 372 (1026)
. ..++... .+..+++.||.. .....+.+|++.+++|..++++|. +..|+++++++.||++|
T Consensus 241 ~------------~~~~~~~-----~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~G 301 (534)
T PHA03098 241 K------------ILPRSST-----FGSIIYIHITMS-IFTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIG 301 (534)
T ss_pred C------------CCcCccC-----CCcceEeecccc-hhhceeeecchhhhhcccccCccc-cccceEEEECCEEEEEC
Confidence 0 0111111 123466656644 234556789999999999887764 44578999999999999
Q ss_pred ccCC------CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcc
Q psy9769 373 GFNG------SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRS 446 (1026)
Q Consensus 373 G~~~------~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 446 (1026)
|..+ ++++||+.+++|..+++||.+|.+|++++++++||++||.++...++++++||+.+++|+.+++||.||.
T Consensus 302 G~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~ 381 (534)
T PHA03098 302 GMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRY 381 (534)
T ss_pred CCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCc
Confidence 9753 6889999999999999999999999999999999999999866678999999999999999999999999
Q ss_pred eeEEEEECCEEEEEeCCC-------ceeeEEcCcccEEEeecCCCcc
Q psy9769 447 SVGVGVLNGCLYAENLDG-------RILGCVKEITDWGLIIELPNFL 486 (1026)
Q Consensus 447 ~~~~~~~~~~lyv~GG~~-------~~~~~~~~~~~W~~~~~lP~~~ 486 (1026)
.|++++++++||++||.. ....||+.+++|..++++|.++
T Consensus 382 ~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r 428 (534)
T PHA03098 382 NPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH 428 (534)
T ss_pred cceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc
Confidence 999999999999999942 3456788888999988887643
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=5.4e-67 Score=608.56 Aligned_cols=388 Identities=20% Similarity=0.298 Sum_probs=326.6
Q ss_pred HHHHHHHhcCCCccEEEEECCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEe--cCCCHHHHHHHhhheecceeee
Q psy9769 54 ETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVL--KGVDPNALKLLIDYVYSCEIYV 130 (1026)
Q Consensus 54 ~~l~~l~~~~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l--~~~~~~~f~~~l~~~Ytg~~~i 130 (1026)
+.+..++.++.+|||++.++ ++|+|||.|||++|+||++||+ +|+|+.+ ++.+ .++++++|+.+|+|+|||++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~i 88 (480)
T PHA02790 11 KNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYI 88 (480)
T ss_pred hhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEE
Confidence 56778999999999988765 6999999999999999999999 8999965 5665 3899999999999999999999
Q ss_pred chhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecc--cccccCCH
Q psy9769 131 TEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVEC--EEFLSLSH 208 (1026)
Q Consensus 131 ~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~--~~f~~L~~ 208 (1026)
+.+|+.+||.+|++||++.++++|++||.++++++||+.++.+|+.|++.+|.+.|.+||.+||.++.++ ++|+.|+.
T Consensus 89 t~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 89 DSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM 168 (480)
T ss_pred ecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 89999996
Q ss_pred hhHhceeccccccccchhhHHHHHHHHHhcChhHHHHHHHHHHhh-cccCCCCHHHHHhhccccceeccCccchhhHHHH
Q psy9769 209 EQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEY-VRLPLLSEDYLIQRVEEETVFKNDIRCKDYLIEA 287 (1026)
Q Consensus 209 ~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~-vr~~~l~~~~l~~~~~~~~l~~~~~~~~~~i~~a 287 (1026)
.+||++|+|++.+|++||+++++|++++. .|.+.+.+++++ ||+++|++..+... ...+.++
T Consensus 169 ---~~lLssd~L~v~~Ee~V~eav~~Wl~~~~-~~~~~l~~~vr~~ir~~~l~~~~l~~~-------------~~~~~~~ 231 (480)
T PHA02790 169 ---KLILESDELNVPDEDYVVDFVIKWYMKRR-NRLGNLLLLIKNVIRSNYLSPRGINNV-------------KWILDCT 231 (480)
T ss_pred ---HHhcccccCCCccHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCChhhCCHHHHHHH-------------HHHHHHH
Confidence 67999999999999999999999999863 345555566666 88898888776431 1222333
Q ss_pred hheeeeeec-c-ccceee--eeccCCC----CCCCCccCCcEEEEEcCCCC-CCCcEEEEEECCCCcEEEcCCCCccccc
Q psy9769 288 LKYHILVKK-G-EVNKLT--LVRTPRT----KPRQPLRVPKVMLVVGGQAP-KAIRSVECYDFKTERWQSVAEMPTRRCR 358 (1026)
Q Consensus 288 ~~~~~~~~~-~-~~~~~~--~~~~~~~----~~~~~~~~~~~i~v~GG~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~ 358 (1026)
..++....+ . .+.... .+....+ .+......++.+|++||.+. ...+++++|||.+++|..+++||.+|..
T Consensus 232 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~ 311 (480)
T PHA02790 232 KIFHCDKQPRKSYKYPFIEYPMNMDQIIDIFHMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY 311 (480)
T ss_pred HHhhccccccccccccccccCCcccceeeccCCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc
Confidence 322211000 0 000000 0000001 11112236889999999753 4568899999999999999999999999
Q ss_pred eeeEEECCEEEEEeccC--CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEE
Q psy9769 359 AGLVFLHEKVYAVGGFN--GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWN 436 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 436 (1026)
+++++++|+||++||.+ .++++||+.+++|+.+++||.+|.+|++++++|+||++||.++. .+.+++|||.+++|+
T Consensus 312 ~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 312 ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DTTTEYLLPNHDQWQ 389 (480)
T ss_pred ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--CccEEEEeCCCCEEE
Confidence 99999999999999975 36899999999999999999999999999999999999998643 378999999999999
Q ss_pred EccCCCCCcceeEEEEECCEEEEEeC
Q psy9769 437 MIAPMSTRRSSVGVGVLNGCLYAENL 462 (1026)
Q Consensus 437 ~~~~~p~~r~~~~~~~~~~~lyv~GG 462 (1026)
.+++||.||..+++++++|+|||+||
T Consensus 390 ~~~~m~~~r~~~~~~~~~~~IYv~GG 415 (480)
T PHA02790 390 FGPSTYYPHYKSCALVFGRRLFLVGR 415 (480)
T ss_pred eCCCCCCccccceEEEECCEEEEECC
Confidence 99999999999999999999999987
No 5
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-46 Score=418.13 Aligned_cols=414 Identities=17% Similarity=0.198 Sum_probs=343.5
Q ss_pred ccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccc--cccccCcccccccccccccceeeeecccceeeeeeccc
Q psy9769 520 LFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYIN--TTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS 597 (1026)
Q Consensus 520 ~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~--~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~ 597 (1026)
.|++|+.+.+.|+++..+. ..+.||.+.....+.|.. ..+..|.+|.|.|....++|++|+++ ++.||+|.+.
T Consensus 62 ~~~~gd~v~v~v~~~e~~~---g~~~lS~~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~--gvr~FlP~S~ 136 (541)
T COG0539 62 VVQVGDEVEVLVLRVEDGE---GELVLSRRKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE--GVRAFLPGSL 136 (541)
T ss_pred eecCCCEEEEEEEEEecCC---ceEEeeHHHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC--CEEEeccHHH
Confidence 6899999999999987665 578899888877775544 37888999999999999999999994 3899999632
Q ss_pred ----------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcceeec
Q psy9769 598 ----------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKL 667 (1026)
Q Consensus 598 ----------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~ 667 (1026)
..+|+++.++|++++.. ++.+.+|. +.+..+.....+...+++|++|++|.|+|++++++|++|++
T Consensus 137 v~~r~v~d~~~~~Gk~~~~kiie~d~~--~n~vv~Sr--R~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdi 212 (541)
T COG0539 137 VDVRPVRDLDPLIGKELEFKILELDKK--RNNVVLSR--RAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDI 212 (541)
T ss_pred hcccccccccccCCceEEEEEEEEccc--cCcEEEEh--HHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEe
Confidence 67999999999999998 66666664 44555555566778899999999999999999999999999
Q ss_pred cccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeeceeeeeee
Q psy9769 668 KNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFED 743 (1026)
Q Consensus 668 ~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~ 743 (1026)
+|++|++|.++|||.+ .+.+++||++ +++||++|++++++.||+|++ .++||..+...|+.|+.+.+
T Consensus 213 --gGvdGLlHiseiS~~rv~~P~~vvkvGd~V--kvkVi~~D~e~~RVsLSlK~l-----~~dPw~~i~~~~~~g~~v~G 283 (541)
T COG0539 213 --GGVDGLLHISEISWKRVDHPSEVVKVGDEV--KVKVISLDEERGRVSLSLKQL-----EEDPWEGIEKKYPVGDKVEG 283 (541)
T ss_pred --cCeeeEEehhhccccccCCHHHhcccCCEE--EEEEEEEccCCCeEEEEehhc-----ccCcHHHHhhhcCCCCEEEE
Confidence 7899999999999988 7889999999 999999999999999999996 56999999999999999999
Q ss_pred ccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEcccccccccCceEEEE--CC
Q psy9769 744 SSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVL--DN 821 (1026)
Q Consensus 744 ~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~--~~ 821 (1026)
. |+++..||+|+++.. |+.|+.| +++|+|.+...+..++ ++
T Consensus 284 ~-Vt~i~~~GafVei~~------------------GvEGlvh------------------vSEisw~~~~~P~evv~~Gq 326 (541)
T COG0539 284 K-VTNLTDYGAFVEIEE------------------GVEGLVH------------------VSEISWTKKNVPSEVVKVGQ 326 (541)
T ss_pred E-EEEeecCcEEEEecC------------------Cccceee------------------chhhcccccCCHHHhcccCC
Confidence 9 999999998777765 8999999 8888888776654444 44
Q ss_pred EE-EEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecceeeEeeCceeeeeEeEEEEeeeEEEeccceee
Q psy9769 822 IL-YAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLK 900 (1026)
Q Consensus 822 ~i-~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~ 900 (1026)
.+ ..+-..|....+.++.+.....++|..... ....|..++|+|+++++||+||.+++ |++
T Consensus 327 ~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~-----------------~~~~g~~v~g~v~~~t~~g~fv~le~-gid 388 (541)
T COG0539 327 EVEVKVLDIDPERRRISLGLKQLKENPWEEFAD-----------------KHPVGDVVEGKVKSITDFGAFVELEG-GID 388 (541)
T ss_pred EEEEEEEeeCchhceEEeeehhhhcChhhhhhh-----------------hcCCCCeEEEEEeeecccceEEccCC-Ccc
Confidence 44 223233333333333333333333333222 24589999999999999999999999 999
Q ss_pred eeccc---ce--eeCCccccccCcEEee--------cCeEEEehhhhhcccCCCCccccCCC-CcEEEEEEEEEecceEE
Q psy9769 901 ATCEN---EY--VEGNKADIKVGDEVQA--------KNSIEVAFKSLYRIAQPLTSVKHTKP-GRLVWGVLKEKMPGGVR 966 (1026)
Q Consensus 901 ~~~~~---~~--~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~~~~~~~~~~~~~-G~~v~G~V~~i~~~G~f 966 (1026)
|++|. .| ...+..+||.|+++++ +++|+|++|||.++ ||..+...++ |++++|+|+++.++|+|
T Consensus 389 G~vh~~d~sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~--p~~~~~~~~~~~~~v~~~v~~i~~~G~~ 466 (541)
T COG0539 389 GLVHLSDLSWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEES--PWEEFSEKYKKGSVVKGKVKSVKDKGAF 466 (541)
T ss_pred ceEEHHhcCccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhccC--chhhhHhhccCCCeEEEEEEEEccCceE
Confidence 99999 43 2234458999999994 89999999999666 6667777666 99999999999999999
Q ss_pred EEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 967 VEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 967 V~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
|+|.++++||+|.++++++ .|++||+|+|+|+++|+++.++.
T Consensus 467 v~l~~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~ 508 (541)
T COG0539 467 VELGGGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKIL 508 (541)
T ss_pred EEecCceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEE
Confidence 9999999999999999776 79999999999999999988885
No 6
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-45 Score=408.61 Aligned_cols=393 Identities=19% Similarity=0.265 Sum_probs=331.3
Q ss_pred ccccccccCcccccccccccccceeeeecccceeeeeeccc---------cccCceEEEEEeeeeeccceeEEEEechHH
Q psy9769 557 YINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS---------VILGQIVTCMISKIKVAASMSILEVTLDEE 627 (1026)
Q Consensus 557 ~~~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~---------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~ 627 (1026)
.....+.+|.+++|+|.++++++++||+|+ ..+|++|.++ +++|+.+.+.|..+.+. .+.+.+|.++.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~-Kseg~ip~~E~~~~~~~~~~~~gd~v~v~v~~~e~~--~g~~~lS~~k~ 90 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGG-KSEGVIPISEFSNEPVEDVVQVGDEVEVLVLRVEDG--EGELVLSRRKA 90 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecC-ccccEeEHHHhccccccceecCCCEEEEEEEEEecC--CceEEeeHHHH
Confidence 456689999999999999999999999998 5699999754 88899999999999988 56677887765
Q ss_pred HHhhhccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeeec
Q psy9769 628 LIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYVC 705 (1026)
Q Consensus 628 ~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~vd 705 (1026)
....++ ...-..+..|.+|+|+|....++|++|++ +|++||+|.++++..+ +....+|+++ +++|+++|
T Consensus 91 ~~~~~w-----~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi--~gvr~FlP~S~v~~r~v~d~~~~~Gk~~--~~kiie~d 161 (541)
T COG0539 91 ERERAW-----EKLEEAFENGEIVEGKITGKVKGGLTVDI--EGVRAFLPGSLVDVRPVRDLDPLIGKEL--EFKILELD 161 (541)
T ss_pred HHHHhH-----HHHHHHHhcCCeEEEEEEEEecCcEEEEE--CCEEEeccHHHhcccccccccccCCceE--EEEEEEEc
Confidence 554432 33344457899999999999999999999 6899999999999884 6668899999 99999999
Q ss_pred cccceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCc
Q psy9769 706 PRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISR 785 (1026)
Q Consensus 706 ~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~ 785 (1026)
+.++++.+|+|..+..... .....+...+++|+++++. |+++++|| .++.+||++|+.|
T Consensus 162 ~~~n~vv~SrR~~~e~~~~-~~r~e~~~~l~~G~vV~G~-V~~It~~G-------------------afVdigGvdGLlH 220 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERS-EQREELLNKLEVGEVVEGV-VKNITDYG-------------------AFVDIGGVDGLLH 220 (541)
T ss_pred cccCcEEEEhHHHhhHHHH-HHHHHHHhcCCCCceEEEE-EEEeecCc-------------------EEEEecCeeeEEe
Confidence 9999999999997764432 2334566788999999997 99999999 6788999999999
Q ss_pred cccceEEEecCCCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEe
Q psy9769 786 QCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLES 865 (1026)
Q Consensus 786 ~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~ 865 (1026)
+++|+|.|..|+..++. +|.. +...+..+|+++++ .+++..+
T Consensus 221 ------------------iseiS~~rv~~P~~vvk-----vGd~----VkvkVi~~D~e~~R-----------VsLSlK~ 262 (541)
T COG0539 221 ------------------ISEISWKRVDHPSEVVK-----VGDE----VKVKVISLDEERGR-----------VSLSLKQ 262 (541)
T ss_pred ------------------hhhccccccCCHHHhcc-----cCCE----EEEEEEEEccCCCe-----------EEEEehh
Confidence 99999999988876652 3332 44556677777643 5555555
Q ss_pred ecceeeE------eeCceeeeeEeEEEEeeeEEEeccceeeeeccc---ce--eeCCccccccCcEEe--------ecCe
Q psy9769 866 VASTAEV------NLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN---EY--VEGNKADIKVGDEVQ--------AKNS 926 (1026)
Q Consensus 866 ~~~~~~~------~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~---~~--~~~~~~~~kvG~~v~--------~~~~ 926 (1026)
+...+|. ..|+.+.|+|+++++||+||++.+ |++||+|. +| ...|.+.+++||+|+ .++|
T Consensus 263 l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~-GvEGlvhvSEisw~~~~~P~evv~~Gq~V~V~Vl~id~e~rR 341 (541)
T COG0539 263 LEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEE-GVEGLVHVSEISWTKKNVPSEVVKVGQEVEVKVLDIDPERRR 341 (541)
T ss_pred cccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEecC-CccceeechhhcccccCCHHHhcccCCEEEEEEEeeCchhce
Confidence 5444443 489999999999999999999999 99999999 33 334888899999998 3999
Q ss_pred EEEehhhhhcccCCCCccccCCC-CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEE
Q psy9769 927 IEVAFKSLYRIAQPLTSVKHTKP-GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQIL 1005 (1026)
Q Consensus 927 i~ls~K~l~~~~~~~~~~~~~~~-G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl 1005 (1026)
|+||+||+. .+||..+++.++ |++++|.|+++++||+||++++|++||+|.++|+|.....+.+.||+|++|+|+||
T Consensus 342 IsL~iKq~~--~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~sw~~~~~~~~~~k~Gd~v~~~vl 419 (541)
T COG0539 342 ISLGLKQLK--ENPWEEFADKHPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDLSWDRPGEEAEKYKKGDEVEAKVL 419 (541)
T ss_pred EEeeehhhh--cChhhhhhhhcCCCCeEEEEEeeecccceEEccCCCccceEEHHhcCccccCcHHHhhccCcEEEEEEE
Confidence 999999974 556778888777 99999999999999999999999999999999999776666669999999999999
Q ss_pred EEeCCeeeechhhhhhhc
Q psy9769 1006 KYEDGELLLTEADEKLHK 1023 (1026)
Q Consensus 1006 ~vd~~~~~~~~~~~~~~~ 1023 (1026)
.||+++.++|+..+||.+
T Consensus 420 ~vd~~~~~isLgiKql~~ 437 (541)
T COG0539 420 AVDKEKERISLGIKQLEE 437 (541)
T ss_pred EEecccceeeeehhhhcc
Confidence 999999999998888864
No 7
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=9.3e-44 Score=424.87 Aligned_cols=422 Identities=12% Similarity=0.164 Sum_probs=325.7
Q ss_pred ccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccc--cccccCccccccccccc--ccceeeeecccceeeeeec
Q psy9769 520 LFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYIN--TTLETGLVLPACVHSKE--DHGYLLDVGVKNTRAFIKY 595 (1026)
Q Consensus 520 ~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~--~~l~~G~~v~g~V~sv~--d~g~~v~~G~~~~~gf~~~ 595 (1026)
.+++|+.|.+.|++++.. + +.||.......+.|.. .+++.|.+|+|+|.+++ ++|++|++|. ++.||+|.
T Consensus 357 ~~kvGd~i~~~V~~~~~~--~---~~LS~~~~~~~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~-~~~gfiP~ 430 (863)
T PRK12269 357 PPKAGDGVRVYVERVTPY--G---PELSKTKADRLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGA-GMMAFLPI 430 (863)
T ss_pred CCCCCCEEEEEEEEEcCC--c---eEEEehHhhhhHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECC-CcEEEEEH
Confidence 368999999999998642 2 6788876654443322 47899999999999984 4799999974 36999998
Q ss_pred cc----------cccCceEEEEEeeeeec---cceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCc
Q psy9769 596 DS----------VILGQIVTCMISKIKVA---ASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHG 662 (1026)
Q Consensus 596 ~~----------~~~G~~v~~~v~~~~~~---~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G 662 (1026)
++ ..+|+.+++.|++++.. .+++.+.+|.+. +............++++++|++|+|+|.++.++|
T Consensus 431 se~~~~~~~~~~~~vG~~ie~~V~~~~~~~~~~~~~~iVlSrr~--~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G 508 (863)
T PRK12269 431 SQSDCQKVDAPESLIGLTSKFYIERISQSKQHRGNDNIVINRRR--YLEERARQAREEFFNSVHIEDSVSGVVKSFTSFG 508 (863)
T ss_pred HHhccccccchHHhCCCeEEEEEEEEecccccCCCCeEEEEHHH--HHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCc
Confidence 65 25899999999998763 124567777554 3333333444556788999999999999999999
Q ss_pred ceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeecee
Q psy9769 663 WKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKK 738 (1026)
Q Consensus 663 ~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g 738 (1026)
++|++ +|+.||+|.+++++.+ .+.+++||++ +|+||.+|++++++.||+|+. .+++|..+.+.|+.|
T Consensus 509 ~fVdl--~Gv~Gfvp~SeiS~~~v~~~~~~~kvGq~v--~vkVi~iD~e~~rI~LSlK~l-----~~~p~~~~~~~~~vG 579 (863)
T PRK12269 509 AFIDL--GGFDGLLHVNDMSWGHVARPREFVKKGQTI--ELKVIRLDQAEKRINLSLKHF-----QPDPWLEFENKFGVN 579 (863)
T ss_pred EEEEE--CCEEEEEEchhccccccCCHHHhccCCCEE--EEEEEEEecCCCeEEEEEecc-----ccchhhhhhccCCCC
Confidence 99999 7999999999999876 4668899999 999999999999999999996 357888888999999
Q ss_pred eeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEcccccc-cccCceEE
Q psy9769 739 TIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLY-KRSGAGVG 817 (1026)
Q Consensus 739 ~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~-~r~~~~~~ 817 (1026)
+++++. |+++..+|+++++.. |++|+.| +++++| ++..++..
T Consensus 580 ~iV~G~-V~~I~~fG~fVeL~~------------------gveGLvh------------------iSEls~~~~~~~p~~ 622 (863)
T PRK12269 580 DVVKGR-VTKIADFGAFIELAE------------------GIEGLAH------------------ISEFSWVKKTSKPSD 622 (863)
T ss_pred CEEEEE-EEEEeCCeEEEEecC------------------CceeeeE------------------HHHhcCccccCCHHH
Confidence 999997 999999997666653 6777777 666665 34333332
Q ss_pred EE--CCEE-EEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecceeeEeeCceeeeeEeEEEEeeeEEEe
Q psy9769 818 VL--DNIL-YAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGVIAQV 894 (1026)
Q Consensus 818 ~~--~~~i-~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l 894 (1026)
.+ ++.+ ..+-+.|......++.......++|..+. ..+..|+.++|+|+++++||+||+|
T Consensus 623 ~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~-----------------~~~~vG~~v~G~V~~i~~~G~fV~l 685 (863)
T PRK12269 623 MVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIE-----------------ARYPVGARFTRRIVKVTNAGAFIEM 685 (863)
T ss_pred cCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHH-----------------HhCCCCCEEEEEEEEEecceEEEEe
Confidence 22 4444 22333333223333333333334444331 1245799999999999999999999
Q ss_pred ccceeeeeccc---ceee---CCccccccCcEEee--------cCeEEEehhhhhcccCCCCccccC-CCCcEEEEEEEE
Q psy9769 895 GYYKLKATCEN---EYVE---GNKADIKVGDEVQA--------KNSIEVAFKSLYRIAQPLTSVKHT-KPGRLVWGVLKE 959 (1026)
Q Consensus 895 ~~~~~~~~~~~---~~~~---~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~~~~~~~~~~~-~~G~~v~G~V~~ 959 (1026)
++ |++|++|. .|.. ++...|++||+|+. +++|.||+|++.. +||..|.+. ++|++++|+|++
T Consensus 686 ~~-gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~--dpw~~~~~~~~vG~iV~GkV~~ 762 (863)
T PRK12269 686 EE-GIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQARRIRLGVKQLSD--NPWQVFANAYGVGSTVEGEVSS 762 (863)
T ss_pred CC-CcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEeccCCEEEEEeccccc--ChHHHHHhhCCCCCEEEEEEEE
Confidence 98 99999999 3422 23457999999993 8999999999754 467777664 569999999999
Q ss_pred EecceEEEEeCCCceeeEeccccCcccccCc---ccccccCCEEEEEEEEEeCCeeeec
Q psy9769 960 KMPGGVRVEFDGDISGVFPTSAMSQATRTLV---YTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 960 i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~---~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
++++|+||+|++||+||+|.++|+|++..++ .+.|++||.|+|+|+++|+++.+++
T Consensus 763 v~~~GvFVeL~~gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~ 821 (863)
T PRK12269 763 VTDFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVA 821 (863)
T ss_pred EecCeEEEEcCCCeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEE
Confidence 9999999999999999999999999765544 3569999999999999998665553
No 8
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=3.2e-41 Score=388.98 Aligned_cols=390 Identities=14% Similarity=0.204 Sum_probs=294.4
Q ss_pred ccccCcccccccccccccceeeeecccceeeeeeccc---------cccCceEEEEEeeeeeccceeEEEEechHHHHhh
Q psy9769 561 TLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS---------VILGQIVTCMISKIKVAASMSILEVTLDEELIRS 631 (1026)
Q Consensus 561 ~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~---------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~ 631 (1026)
.+.+|++++|+|.+++++|++|++|.+. +||+|.++ +++|+++++.|++.++. .+.||... ..
T Consensus 31 ~~~~G~~v~G~V~~v~~~~v~Vdig~k~-eg~ip~~e~~~~~~~~~~~~G~~i~~~Vi~~~~~----~~~lS~~~--~~- 102 (491)
T PRK13806 31 ELRVGDKITGTVIAITEDSVFVDTGSKV-DGVVDRAELLDADGELTVAVGDEVELYVVSVNGQ----EIRLSKAL--SG- 102 (491)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEECCCc-EEEEEHHHhcCccccccccCCCEEEEEEEEEcCC----EEEEEhHH--hh-
Confidence 4889999999999999999999998765 99999744 68999999999998764 36667432 11
Q ss_pred hccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeeeccccc
Q psy9769 632 ANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYVCPRHF 709 (1026)
Q Consensus 632 ~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~vd~~~~ 709 (1026)
...+....+.+.+|++|+|+|.++.++|++|++ .|++||+|.+++++.. +....+|+++ +|+|+.+|++++
T Consensus 103 ---~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i--~g~~~flP~s~~~~~~~~~~~~~vG~~i--~~~V~~id~~~~ 175 (491)
T PRK13806 103 ---QGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEV--LGRRAFCPVSQIDLRYVEDPESYVGQTF--QFLITRVEENGR 175 (491)
T ss_pred ---hhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEE--CCEEEEEEHHHhccccCCChHHcCCCeE--EEEEEEEECCCC
Confidence 122444566678999999999999999999999 7999999999998765 2223499999 999999999999
Q ss_pred eEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccc
Q psy9769 710 HVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLS 789 (1026)
Q Consensus 710 ~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~ 789 (1026)
++.||+++.+.. ..+..+..+...++.|+++++. |.++..+|+++++.. |.+|+.|
T Consensus 176 ~v~lSrk~~~~~-~~~~~~~~~~~~l~~G~iv~G~-V~~v~~~G~fV~l~~------------------gv~g~v~---- 231 (491)
T PRK13806 176 NIVVSRRALLER-EQKEALEAFMETVKEGDVVEGT-VTRLAPFGAFVELAP------------------GVEGMVH---- 231 (491)
T ss_pred eEEEEeehhhhh-hhHHHHHHHHhhCCCCCEEEEE-EEEEeCCeEEEEcCC------------------CcEEEEE----
Confidence 999999986543 2234444445568899999987 888999997665543 5566655
Q ss_pred eEEEecCCCCeeEEcccccccccCceEEE--ECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeec
Q psy9769 790 SVEMYSPERNTWEPVKDMLYKRSGAGVGV--LDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVA 867 (1026)
Q Consensus 790 ~~~~~d~~~~~w~~~~~~~~~r~~~~~~~--~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~ 867 (1026)
++++++.|....... .++.+ ...+..+|++.+.- ...+.+.+......+|.
T Consensus 232 --------------~sels~~~~~~~~~~~~vGd~i-----------~vkVl~id~~~~~~--~~ri~lS~K~~~~~p~~ 284 (491)
T PRK13806 232 --------------ISELSWSRVQKADEAVSVGDTV-----------RVKVLGIERAKKGK--GLRISLSIKQAGGDPWD 284 (491)
T ss_pred --------------HHHCCCccccChhHhcCCCCEE-----------EEEEEEEecccCCc--ceEEEEEehhhhcccch
Confidence 555555554333222 13333 33344455543210 00001111111122232
Q ss_pred ce-eeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc---ce---eeCCccccccCcEEee--------cCeEEEehh
Q psy9769 868 ST-AEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN---EY---VEGNKADIKVGDEVQA--------KNSIEVAFK 932 (1026)
Q Consensus 868 ~~-~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~---~~---~~~~~~~~kvG~~v~~--------~~~i~ls~K 932 (1026)
.. ..+..|+.+.|+|+++.+||+||++++ |++|++|. .| +.++.+.|++||.++. +++|.||+|
T Consensus 285 ~~~~~~~~G~~v~G~V~~v~~~G~fV~l~~-gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K 363 (491)
T PRK13806 285 TVGDRLKAGDKVTGKVVRLAPFGAFVEILP-GIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLR 363 (491)
T ss_pred hhhccCCCCCEEEEEEEEEeCceEEEEeCC-CcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEe
Confidence 22 235689999999999999999999998 89999998 23 3456678999999883 789999999
Q ss_pred hhhcccCCCCcccc-CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCe
Q psy9769 933 SLYRIAQPLTSVKH-TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE 1011 (1026)
Q Consensus 933 ~l~~~~~~~~~~~~-~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~ 1011 (1026)
++.. +||..+.+ .++|++|+|+|+++++||+||++++||+||||.++++|.+++++.+.|++||+|+|+|+++|+++
T Consensus 364 ~~~~--~p~~~~~~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~ 441 (491)
T PRK13806 364 DAEG--DPWADVAERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAK 441 (491)
T ss_pred eccc--ChhHHhhhhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCC
Confidence 9744 45655544 45699999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeechhhh
Q psy9769 1012 LLLTEADE 1019 (1026)
Q Consensus 1012 ~~~~~~~~ 1019 (1026)
.+++....
T Consensus 442 ~ri~Ls~~ 449 (491)
T PRK13806 442 RKISLAPA 449 (491)
T ss_pred CEEEEEee
Confidence 77764433
No 9
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=2.7e-41 Score=399.26 Aligned_cols=423 Identities=17% Similarity=0.175 Sum_probs=321.8
Q ss_pred cccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccc--cccccCcccccccccccccceeeeecccceeeeeecc
Q psy9769 519 NLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYIN--TTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYD 596 (1026)
Q Consensus 519 ~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~--~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~ 596 (1026)
..|++||.+.+.|.++.+. .+++.||..+....+.|.. .++.+|++++|+|.+++++|++|++| ++.||+|.+
T Consensus 56 ~~~~vGd~i~~~V~~~~~~---~g~i~lS~~~~~~~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~--g~~~flP~s 130 (516)
T TIGR00717 56 LEIQVGDEVEVYLDRVEDR---FGETVLSREKAQRHELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN--GVEAFLPGS 130 (516)
T ss_pred cCCCCCCEEEEEEEEEeCC---CCcEEEEHHHhhhhHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC--CEEEEEeHH
Confidence 5699999999999988643 4578999887654443332 36789999999999999999999997 789999975
Q ss_pred c----------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcceee
Q psy9769 597 S----------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAK 666 (1026)
Q Consensus 597 ~----------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~ 666 (1026)
+ ..+|+.+++.|++++.. ++.+.+|.++. +.. .........++.+++|+.++|+|.++.++|++|+
T Consensus 131 ~~~~~~~~~~~~~vG~~i~~~v~~~~~~--~~~iv~Srk~~-l~~-~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~ 206 (516)
T TIGR00717 131 QVDVKPIKDLDSLIGKTLKFKIIKLDQK--RNNIVVSRRAY-LEE-ERSQAREELLENLKEGDVVKGVVKNITDFGAFVD 206 (516)
T ss_pred HhcCcccCchhhhCCCEEEEEEEEEECC--CCcEEEEHHHH-HHH-HHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEE
Confidence 4 45899999999999987 66788886542 222 2222345567889999999999999999999999
Q ss_pred ccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeeceeeeee
Q psy9769 667 LKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFE 742 (1026)
Q Consensus 667 ~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~ 742 (1026)
+ +++.||+|.+++++.+ .+.|++|+++ +|+|+.+|++++++.||+++.. +++|....+.+..|+++.
T Consensus 207 l--~g~~g~lp~~e~s~~~~~~~~~~~~vG~~v--~v~Vl~~d~~~~~i~lS~k~~~-----~~p~~~~~~~~~~G~i~~ 277 (516)
T TIGR00717 207 L--GGVDGLLHITDMSWKRVKHPSEYVKVGQEV--KVKVIKFDKEKGRISLSLKQLG-----EDPWEAIEKKFPVGDKIT 277 (516)
T ss_pred E--CCEEEEEEHHHcCCCCCCCHHHhccCCCEE--EEEEEEEECCCCcEEEEEEecc-----hhHHHHHHhhccCCCEEE
Confidence 9 6899999999999866 4568999999 9999999999999999999853 356666667788999999
Q ss_pred eccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEccccccccc-Cce--EEEE
Q psy9769 743 DSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRS-GAG--VGVL 819 (1026)
Q Consensus 743 ~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~-~~~--~~~~ 819 (1026)
+. |+++..+|+++++.. |..++.| ++++++.+. .+. ....
T Consensus 278 g~-V~~v~~~G~fV~l~~------------------~v~g~v~------------------~sels~~~~~~~~~~~~~v 320 (516)
T TIGR00717 278 GR-VTNLTDYGVFVEIEE------------------GIEGLVH------------------VSEMSWVKKNSHPSKVVKK 320 (516)
T ss_pred EE-EEEeeCCcEEEEeCC------------------CCEEEEE------------------HHHcCCccccCCHHHhccC
Confidence 88 889999997766654 4444444 223322110 000 0111
Q ss_pred CCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecce-eeEeeCceeeeeEeEEEEeeeEEEeccce
Q psy9769 820 DNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVAST-AEVNLGDEVSCVVKGISVRGVIAQVGYYK 898 (1026)
Q Consensus 820 ~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~-~~~~~G~~~~g~v~~i~~~g~~v~l~~~~ 898 (1026)
++. +...+..+|++.++-... .......++... ..+..|+.+.|+|+++.+||+||++++ +
T Consensus 321 G~~-----------v~v~V~~id~~~~~i~lS------~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~ 382 (516)
T TIGR00717 321 GDE-----------VEVMILDIDPERRRLSLG------LKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEG-G 382 (516)
T ss_pred CCE-----------EEEEEEEEcCCCCEEEEE------ehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEECCC-C
Confidence 333 333344455554331110 000001111111 124579999999999999999999998 9
Q ss_pred eeeecccc---e---eeCCccccccCcEEee--------cCeEEEehhhhhcccCCCCcccc-CCCCcEEEEEEEEEecc
Q psy9769 899 LKATCENE---Y---VEGNKADIKVGDEVQA--------KNSIEVAFKSLYRIAQPLTSVKH-TKPGRLVWGVLKEKMPG 963 (1026)
Q Consensus 899 ~~~~~~~~---~---~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~~~~~~~~~~-~~~G~~v~G~V~~i~~~ 963 (1026)
++|++|.. | ..+++..|++||.|+. +++|.||+|++..+ ||..+.+ .++|+++.|+|++++++
T Consensus 383 v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~--p~~~~~~~~~~G~~v~g~V~~v~~~ 460 (516)
T TIGR00717 383 IDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTEN--PWEKFAAKYKVGSVVKGKVTEIKDF 460 (516)
T ss_pred CEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCC--chhhhhhccCcceEEEEEEEEEecc
Confidence 99999982 2 2245578999999883 68999999997544 5444444 56799999999999999
Q ss_pred eEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeech
Q psy9769 964 GVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 964 G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
|+||+++++++||+|.+++++++++++.+.|++||+|+++|+++|+++.+++.
T Consensus 461 G~fV~l~~~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~l 513 (516)
T TIGR00717 461 GAFVELPGGVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSL 513 (516)
T ss_pred eEEEEcCCCeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEE
Confidence 99999999999999999999999999999999999999999999987666653
No 10
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=6.4e-41 Score=399.13 Aligned_cols=421 Identities=17% Similarity=0.164 Sum_probs=325.0
Q ss_pred ccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccc--cccccCcccccccccccccceeeeecccceeeeeeccc
Q psy9769 520 LFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYIN--TTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS 597 (1026)
Q Consensus 520 ~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~--~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~ 597 (1026)
.+++||.+.+.|+++++.. +++.||.++......+.. ..++.|++|+|.|.++.++|++|++| ++.||+|.++
T Consensus 71 ~~~vG~~i~~~V~~~~~~~---~~i~lS~k~~~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~--g~~gfip~s~ 145 (565)
T PRK06299 71 EVKVGDEVEVYVERIEDGF---GETVLSREKAKRLEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN--GVEAFLPGSQ 145 (565)
T ss_pred cCCCCCEEEEEEEEEECCC---CcEEEechHHHHHHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC--CEEEEEEHHH
Confidence 5899999999999987443 478999877654444432 36778999999999999999999997 7999999754
Q ss_pred ----------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcceeec
Q psy9769 598 ----------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKL 667 (1026)
Q Consensus 598 ----------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~ 667 (1026)
+.+||.++|+|++++.. ++.+.+|.++.. .......+...+.++++|++++|+|.++.++|++|++
T Consensus 146 ~~~~~~~~~~~~vG~~i~~~V~~~d~~--~~~i~lS~k~~~--~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i 221 (565)
T PRK06299 146 VDVRPVRDTDPLEGKELEFKVIKLDKK--RNNIVVSRRAVL--EEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDL 221 (565)
T ss_pred ccCcCCCChHHhCCCEEEEEEEEEECC--CCEEEEEhHHhh--hhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEE
Confidence 46899999999999988 667788876543 2222234455678899999999999999999999999
Q ss_pred cccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeeceeeeeee
Q psy9769 668 KNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFED 743 (1026)
Q Consensus 668 ~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~ 743 (1026)
+|+.||+|.+++++.+ .+.|++|+++ +|+|+.+|++++++.||+++. .++||..+...+..|+++.+
T Consensus 222 --~g~~glv~~se~s~~~~~~~~~~~kvG~~v--~v~V~~~d~~~~~i~lS~k~~-----~~~p~~~~~~~~~~G~~v~g 292 (565)
T PRK06299 222 --GGVDGLLHITDISWKRVNHPSEVVNVGDEV--KVKVLKFDKEKKRVSLGLKQL-----GEDPWEAIEKKYPVGSKVKG 292 (565)
T ss_pred --CCEEEEEEHHHhcccccCCHhhcCCCCCEE--EEEEEEEeCCCCeEEEEEEec-----ccChhHHHHhhCCCCCEEEE
Confidence 5999999999999876 4569999999 999999999999999999985 35788888888999999999
Q ss_pred ccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEcccccccc-cCceE--EEEC
Q psy9769 744 SSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKR-SGAGV--GVLD 820 (1026)
Q Consensus 744 ~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r-~~~~~--~~~~ 820 (1026)
. |.++..+|++++++. |.+|+.| ++++++.+ ..++. ...+
T Consensus 293 ~-V~~i~~~G~fV~l~~------------------~v~Glv~------------------~sel~~~~~~~~~~~~~~~G 335 (565)
T PRK06299 293 K-VTNITDYGAFVELEE------------------GIEGLVH------------------VSEMSWTKKNKHPSKVVSVG 335 (565)
T ss_pred E-EEEEeCCeEEEEeCC------------------CCEEEEE------------------HHHcCccccccCHHHhcCCC
Confidence 8 888999997776654 4555544 22333211 01110 0113
Q ss_pred CEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecce-eeEeeCceeeeeEeEEEEeeeEEEecccee
Q psy9769 821 NILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVAST-AEVNLGDEVSCVVKGISVRGVIAQVGYYKL 899 (1026)
Q Consensus 821 ~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~-~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~ 899 (1026)
+.+ ...+..+|++.++-... .......++... ..+..|+.+.|+|+++.++|+||++++ ++
T Consensus 336 ~~v-----------~v~V~~id~~~~~i~ls------~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~v 397 (565)
T PRK06299 336 QEV-----------EVMVLEIDEEKRRISLG------LKQCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEG-GI 397 (565)
T ss_pred CEE-----------EEEEEEEcCCCCEEEEe------hHHhccchhhhHHHhCCCCCEEEEEEEEEecceEEEECCC-CC
Confidence 333 22334445544321110 000001112111 124579999999999999999999998 89
Q ss_pred eeecccc-----ee-eCCccccccCcEEee--------cCeEEEehhhhhcccCCCCc-cccCCCCcEEEEEEEEEecce
Q psy9769 900 KATCENE-----YV-EGNKADIKVGDEVQA--------KNSIEVAFKSLYRIAQPLTS-VKHTKPGRLVWGVLKEKMPGG 964 (1026)
Q Consensus 900 ~~~~~~~-----~~-~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~~~~~~~-~~~~~~G~~v~G~V~~i~~~G 964 (1026)
+|++|.. +. .++...|++||.+++ +++|.||+|++..+ ||.. ..+.++|++|.|+|+++.++|
T Consensus 398 ~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~--p~~~~~~~~~~G~vV~G~V~~v~~~G 475 (565)
T PRK06299 398 DGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEED--PFEEFAKKHKKGSIVTGTVTEVKDKG 475 (565)
T ss_pred EEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcC--chhHHHhhcCCCCEEEEEEEEEecCc
Confidence 9999992 22 566788999999984 68999999997444 5443 345577999999999999999
Q ss_pred EEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 965 VRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 965 ~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+||++++|+.||+|.+++++.++.++.+.|++||.|+|+|+++|+++.+++
T Consensus 476 ~fV~l~~gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~ 526 (565)
T PRK06299 476 AFVELEDGVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRIS 526 (565)
T ss_pred eEEecCCCcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEE
Confidence 999999999999999999999999999999999999999999998766664
No 11
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=3.9e-39 Score=385.27 Aligned_cols=402 Identities=15% Similarity=0.180 Sum_probs=301.5
Q ss_pred cccccccccccccccCcccccccccccccceeeeecccceeeeeeccc----cccCceEEEEEeeeeeccceeEEEEech
Q psy9769 550 PHHVNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS----VILGQIVTCMISKIKVAASMSILEVTLD 625 (1026)
Q Consensus 550 ~~~~~~~~~~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~----~~~G~~v~~~v~~~~~~~~~~~i~ls~~ 625 (1026)
|..+...++...+++|.+|+|+|.++++++++||+|.+. +|++|..+ +++|+.|++.|.++++. . +.||..
T Consensus 307 ~~~~~~~~~~~~~~~G~iV~G~Vv~i~~~~v~VdiG~K~-eGiI~~~E~~~~~kvGd~i~~~V~~~~~~--~--~~LS~~ 381 (863)
T PRK12269 307 PRQLQERYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKS-EGRVPVEEFEAPPKAGDGVRVYVERVTPY--G--PELSKT 381 (863)
T ss_pred hHHHHHhhccccCCCCCEEEEEEEEEECCEEEEEeCCCc-eEEeEHHHhccCCCCCCEEEEEEEEEcCC--c--eEEEeh
Confidence 445555666778999999999999999999999999875 99999865 58999999999998865 2 567776
Q ss_pred HHHHhhhccCCCcccccccccCCceEEeeeeccc--CCcceeeccccceeeccCcccccchh--hhhhccccccccccee
Q psy9769 626 EELIRSANRLSPSQVSLLNLVPGMKVIANICQQL--PHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSV 701 (1026)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~--~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~I 701 (1026)
+....+ .+....+.+..|.+|+|+|.++. ++|++|++ ..+++||+|.++++... +....+|+++ +++|
T Consensus 382 ~~~~~~-----~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdi-g~~~~gfiP~se~~~~~~~~~~~~vG~~i--e~~V 453 (863)
T PRK12269 382 KADRLG-----LKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDL-GAGMMAFLPISQSDCQKVDAPESLIGLTS--KFYI 453 (863)
T ss_pred HhhhhH-----HHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEE-CCCcEEEEEHHHhccccccchHHhCCCeE--EEEE
Confidence 443222 23444555689999999999974 57999999 25799999999987654 3345699999 9999
Q ss_pred eeecc-----ccceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEE
Q psy9769 702 LYVCP-----RHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIG 776 (1026)
Q Consensus 702 l~vd~-----~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~ 776 (1026)
+.+|+ +.+++.||++..+.+.... ........++.|+++++. |+++..+|+ ++.
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~-~~ee~~~~l~~G~~V~G~-Vk~i~~~G~-------------------fVd 512 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQ-AREEFFNSVHIEDSVSGV-VKSFTSFGA-------------------FID 512 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHH-HHHHHHhcCCCCCEEEEE-EEEEeCCcE-------------------EEE
Confidence 99976 3468999999976644222 111223467788999887 888999994 455
Q ss_pred eccccCCCccccceEEEecCCCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCccc
Q psy9769 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMAL 856 (1026)
Q Consensus 777 ~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~ 856 (1026)
+||.+|+.| ++++++.|..+....+ ..|.. +...+..+|++.++-..
T Consensus 513 l~Gv~Gfvp------------------~SeiS~~~v~~~~~~~-----kvGq~----v~vkVi~iD~e~~rI~L------ 559 (863)
T PRK12269 513 LGGFDGLLH------------------VNDMSWGHVARPREFV-----KKGQT----IELKVIRLDQAEKRINL------ 559 (863)
T ss_pred ECCEEEEEE------------------chhccccccCCHHHhc-----cCCCE----EEEEEEEEecCCCeEEE------
Confidence 677777776 6666666654433222 12222 34445556655543111
Q ss_pred ccccceEEeecce-eeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc---ce---eeCCccccccCcEEee------
Q psy9769 857 CRRNAVLESVAST-AEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN---EY---VEGNKADIKVGDEVQA------ 923 (1026)
Q Consensus 857 ~r~~~~~~~~~~~-~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~---~~---~~~~~~~~kvG~~v~~------ 923 (1026)
.++.+...+|... ..+..|++++|+|+++++||+||+|++ |++|++|. .| ..+|.+.|++||+++.
T Consensus 560 SlK~l~~~p~~~~~~~~~vG~iV~G~V~~I~~fG~fVeL~~-gveGLvhiSEls~~~~~~~p~~~~kvGd~V~vkVl~iD 638 (863)
T PRK12269 560 SLKHFQPDPWLEFENKFGVNDVVKGRVTKIADFGAFIELAE-GIEGLAHISEFSWVKKTSKPSDMVKIGDEVECMILGYD 638 (863)
T ss_pred EEeccccchhhhhhccCCCCCEEEEEEEEEeCCeEEEEecC-CceeeeEHHHhcCccccCCHHHcCCCCCEEEEEEEEEe
Confidence 1111112222221 125689999999999999999999998 99999999 33 4467788999999994
Q ss_pred --cCeEEEehhhhhcccCCCCccccCCC-CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccc-cCcccccccCCE
Q psy9769 924 --KNSIEVAFKSLYRIAQPLTSVKHTKP-GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATR-TLVYTRFVIDTV 999 (1026)
Q Consensus 924 --~~~i~ls~K~l~~~~~~~~~~~~~~~-G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~-~~~~~~~~~G~~ 999 (1026)
+++|+||+|++.. +||.++.+.++ |++++|+|+++++||+||+|++||+||||.++|+|... .++++.|++||.
T Consensus 639 ~e~~rIsLS~K~l~~--~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~ 716 (863)
T PRK12269 639 IQAGRVSLGLKQVTA--NPWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKE 716 (863)
T ss_pred cccCceEEEehhccc--CchHHHHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCE
Confidence 7899999999754 47777766554 99999999999999999999999999999999999654 445678999999
Q ss_pred EEEEEEEEeCCeeeechhhhhh
Q psy9769 1000 IVCQILKYEDGELLLTEADEKL 1021 (1026)
Q Consensus 1000 V~~~Vl~vd~~~~~~~~~~~~~ 1021 (1026)
|+|+|++||+++.+|+.+.+++
T Consensus 717 VkvkVl~ID~e~rrI~LS~K~l 738 (863)
T PRK12269 717 IECMVIECDPQARRIRLGVKQL 738 (863)
T ss_pred EEEEEEEEeccCCEEEEEeccc
Confidence 9999999999888876554443
No 12
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=9.9e-38 Score=371.77 Aligned_cols=385 Identities=17% Similarity=0.229 Sum_probs=295.3
Q ss_pred cccccCcccccccccccccceeeeecccceeeeeeccc---------cccCceEEEEEeeeeeccceeEEEEechHHHHh
Q psy9769 560 TTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS---------VILGQIVTCMISKIKVAASMSILEVTLDEELIR 630 (1026)
Q Consensus 560 ~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~---------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~ 630 (1026)
..+++|++++|+|.+++++|++|++|.+ ++||+|.++ +++|++++|.|+++++. .+.+.||.++....
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdig~k-~~g~lp~~e~~~~~~~~~~~vG~~i~~~V~~~~~~--~~~i~lS~k~~~~~ 102 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDVGLK-SEGRIPLEEFKNEQGELEVKVGDEVEVYVERIEDG--FGETVLSREKAKRL 102 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEeCCC-eEEEEEHHHhcCccccccCCCCCEEEEEEEEEECC--CCcEEEechHHHHH
Confidence 4578999999999999999999999755 699999643 78999999999999987 56788888754333
Q ss_pred hhccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeeecccc
Q psy9769 631 SANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYVCPRH 708 (1026)
Q Consensus 631 ~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~vd~~~ 708 (1026)
. .+....+.+.+|++|+|+|.++.++|++|++ +|++||+|.+++++.. +..+.+|+++ +|+|+.+|+++
T Consensus 103 ~-----~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~--~g~~gfip~s~~~~~~~~~~~~~vG~~i--~~~V~~~d~~~ 173 (565)
T PRK06299 103 E-----AWDKLEKAFENGEIVEGVINGKVKGGFTVDL--NGVEAFLPGSQVDVRPVRDTDPLEGKEL--EFKVIKLDKKR 173 (565)
T ss_pred H-----HHHHHHHHhhCCCEEEEEEEEEECCEEEEEE--CCEEEEEEHHHccCcCCCChHHhCCCEE--EEEEEEEECCC
Confidence 2 2334455667899999999999999999999 6999999999999865 3346799999 99999999999
Q ss_pred ceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCcccc
Q psy9769 709 FHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCL 788 (1026)
Q Consensus 709 ~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~ 788 (1026)
+++.||+|+.+... ...++..+...++.|+++++. |..+..+| .++.+||.+|+.|
T Consensus 174 ~~i~lS~k~~~~~~-~~~~~~~~~~~l~~G~iv~g~-V~~v~~~G-------------------~~V~i~g~~glv~--- 229 (565)
T PRK06299 174 NNIVVSRRAVLEEE-RAEEREELLENLEEGQVVEGV-VKNITDYG-------------------AFVDLGGVDGLLH--- 229 (565)
T ss_pred CEEEEEhHHhhhhh-hhhHHHHHHhcCCCCCEEEEE-EEEEeCCe-------------------EEEEECCEEEEEE---
Confidence 99999999976432 223444556778899999998 88999999 4555678888776
Q ss_pred ceEEEecCCCCeeEEcccccccccCceEEEE--CCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEee
Q psy9769 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVL--DNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESV 866 (1026)
Q Consensus 789 ~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~--~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~ 866 (1026)
++++++.|..+....+ ++.+ ...+...|+++++-. +.+..+...+|
T Consensus 230 ---------------~se~s~~~~~~~~~~~kvG~~v-----------~v~V~~~d~~~~~i~------lS~k~~~~~p~ 277 (565)
T PRK06299 230 ---------------ITDISWKRVNHPSEVVNVGDEV-----------KVKVLKFDKEKKRVS------LGLKQLGEDPW 277 (565)
T ss_pred ---------------HHHhcccccCCHhhcCCCCCEE-----------EEEEEEEeCCCCeEE------EEEEecccChh
Confidence 5555555544333222 4443 222333444433211 00010111112
Q ss_pred cce-eeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc---ce---eeCCccccccCcEEee--------cCeEEEeh
Q psy9769 867 AST-AEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN---EY---VEGNKADIKVGDEVQA--------KNSIEVAF 931 (1026)
Q Consensus 867 ~~~-~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~---~~---~~~~~~~~kvG~~v~~--------~~~i~ls~ 931 (1026)
... ..+..|+.+.|+|+++.++|+||++++ +++|++|. .+ ..+|...|++||.++. +++|.||+
T Consensus 278 ~~~~~~~~~G~~v~g~V~~i~~~G~fV~l~~-~v~Glv~~sel~~~~~~~~~~~~~~~G~~v~v~V~~id~~~~~i~ls~ 356 (565)
T PRK06299 278 EAIEKKYPVGSKVKGKVTNITDYGAFVELEE-GIEGLVHVSEMSWTKKNKHPSKVVSVGQEVEVMVLEIDEEKRRISLGL 356 (565)
T ss_pred HHHHhhCCCCCEEEEEEEEEeCCeEEEEeCC-CCEEEEEHHHcCccccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeh
Confidence 111 134679999999999999999999998 99999998 22 3456677999999883 68999999
Q ss_pred hhhhcccCCCCcccc-CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccc-cCcccccccCCEEEEEEEEEeC
Q psy9769 932 KSLYRIAQPLTSVKH-TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATR-TLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 932 K~l~~~~~~~~~~~~-~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~-~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
|++..+ ||..+.+ .++|+++.|+|++++++|+||+++++++|++|.++|++.+. .++.+.|++||.|+|+|+++|+
T Consensus 357 k~~~~~--p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~ 434 (565)
T PRK06299 357 KQCKEN--PWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDV 434 (565)
T ss_pred HHhccc--hhhhHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeC
Confidence 996444 5444443 45699999999999999999999989999999999998765 8899999999999999999998
Q ss_pred Ceeeec
Q psy9769 1010 GELLLT 1015 (1026)
Q Consensus 1010 ~~~~~~ 1015 (1026)
++.+++
T Consensus 435 ~~~~i~ 440 (565)
T PRK06299 435 EKERIS 440 (565)
T ss_pred CCCEEE
Confidence 766654
No 13
>KOG4441|consensus
Probab=100.00 E-value=2.9e-36 Score=353.02 Aligned_cols=347 Identities=30% Similarity=0.477 Sum_probs=242.2
Q ss_pred HHHHHhhheecceeeechhhHHHHHHHHHhcCchhHHhHHHHhhhcccC------------CcchhhHHHhhhh--cCch
Q psy9769 115 ALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLH------------PTNCLGIRAFADL--HSCL 180 (1026)
Q Consensus 115 ~f~~~l~~~Ytg~~~i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~------------~~n~~~~~~~a~~--~~~~ 180 (1026)
+++..-+|+-. .++++|++.+..+|+.+.+.+|.+.+..|+.+++. .+....++.--+. -.-.
T Consensus 122 v~~~C~~fL~~---~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~ 198 (571)
T KOG4441|consen 122 VVDACCEFLES---QLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEE 198 (571)
T ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHH
Confidence 34444455543 48999999999999999999999999998887631 1111111111110 0113
Q ss_pred hHHHHHHhhhhh-------hhhheecccccccCCHhhHhceeccccccccchhhHHHHHHHHHhcChhHHHHHHHHHHhh
Q psy9769 181 DLLSTAENYIEL-------HFAEIVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEY 253 (1026)
Q Consensus 181 ~L~~~~~~~i~~-------~~~~l~~~~~f~~L~~~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~ 253 (1026)
.+.++++.++.. ++.++++.-.|..|++..|...+..+.+ ++.+...+ +++.+.++.
T Consensus 199 ~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~~~~---------------~~~~~~c~-~~l~ea~~~ 262 (571)
T KOG4441|consen 199 EVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVESEPL---------------IKRDSACR-DLLDEAKKY 262 (571)
T ss_pred HHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhhhhh---------------hccCHHHH-HHHHHHHHH
Confidence 356677766644 4456666777777777777776665443 23333222 222222221
Q ss_pred cccCCCCHHHHHhhcc-------ccceeccCccc--hhhHHHHhheeeeeeccccceeeeeccCCCCCCCCccCCcEEEE
Q psy9769 254 VRLPLLSEDYLIQRVE-------EETVFKNDIRC--KDYLIEALKYHILVKKGEVNKLTLVRTPRTKPRQPLRVPKVMLV 324 (1026)
Q Consensus 254 vr~~~l~~~~l~~~~~-------~~~l~~~~~~~--~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 324 (1026)
...+.-.+. .+... ...++-..... ...+.....|.. ..+.|..++.++.+|..+ ..+..++.||+
T Consensus 263 ~~~~~~~~~--~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~--~~~~w~~~a~m~~~r~~~-~~~~~~~~lYv 337 (571)
T KOG4441|consen 263 HLLPQRRPV--MQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDP--KTNEWSSLAPMPSPRCRV-GVAVLNGKLYV 337 (571)
T ss_pred hhCcccCcc--ccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecC--CcCcEeecCCCCcccccc-cEEEECCEEEE
Confidence 111111000 00000 00111111111 011111111111 134566666666666533 33346889999
Q ss_pred EcCCCC--CCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCC-----CeEEEeCCCCeEEeCCCCcCC
Q psy9769 325 VGGQAP--KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWSSAPPMEAR 397 (1026)
Q Consensus 325 ~GG~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~yd~~~~~W~~~~~~p~~ 397 (1026)
+||.+. ..++++++|||.+++|+.+++|+.+|+.+++++++|.||++||+++ ++++|||.+++|+.+++|+.+
T Consensus 338 ~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~ 417 (571)
T KOG4441|consen 338 VGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR 417 (571)
T ss_pred EccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc
Confidence 999983 5679999999999999999999999999999999999999999986 699999999999999999999
Q ss_pred cceeEEEEECCEEEEEeccCCCC-CCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCCc------eeeEE
Q psy9769 398 RSTLGVAVLNSLIYAVGGFDGSS-GLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGR------ILGCV 470 (1026)
Q Consensus 398 r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~------~~~~~ 470 (1026)
|++|++++++|+||++||.++.. .++++++|||.+++|+.+++|+.+|.++++++++++||++||... +..||
T Consensus 418 r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 418 RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEc
Confidence 99999999999999999998877 899999999999999999999999999999999999999999553 56688
Q ss_pred cCcccEEEeecCCCc
Q psy9769 471 KEITDWGLIIELPNF 485 (1026)
Q Consensus 471 ~~~~~W~~~~~lP~~ 485 (1026)
+.+++|+.+++|+.+
T Consensus 498 p~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSP 512 (571)
T ss_pred CCCCceeEcccCccc
Confidence 889999999888653
No 14
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=8.2e-36 Score=336.68 Aligned_cols=307 Identities=14% Similarity=0.186 Sum_probs=249.2
Q ss_pred ccccccCcccccccccccccceeeeecccceeeeeeccc------------cccCceEEEEEeeeeeccceeEEEEechH
Q psy9769 559 NTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS------------VILGQIVTCMISKIKVAASMSILEVTLDE 626 (1026)
Q Consensus 559 ~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~------------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~ 626 (1026)
...+++|++|.|+|.++.++|++|++|.+ ++||+|..+ +++|+.|+|.|+++++. .+.+.||.++
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k-~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~--~g~liLS~k~ 106 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYK-TEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDK--EGRLILSKKR 106 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCC-cEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECC--CCeEEEEehh
Confidence 35689999999999999999999999854 799999743 67999999999999887 5678888876
Q ss_pred HHHhhhccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeee
Q psy9769 627 ELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYV 704 (1026)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~v 704 (1026)
..... .+....+...+|++|+|+|.++.++|++|++ |++||+|.+++++.+ +..-.+|+++ +|+|+.+
T Consensus 107 ~~~~~-----~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl---Gi~gflP~Sel~~~~~~~~~~~vGq~V--~vkVlei 176 (486)
T PRK07899 107 AQYER-----AWGTIEKIKEKDGVVTGTVIEVVKGGLILDI---GLRGFLPASLVEMRRVRDLQPYIGQEI--EAKIIEL 176 (486)
T ss_pred hcccc-----hHHHHHHHhcCCCEEEEEEEEEECCeEEEEE---CCEEEEEhhHhcccccCChhhcCCCEE--EEEEEEE
Confidence 33222 1222222236899999999999999999998 589999999988765 2234699999 9999999
Q ss_pred ccccceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCC
Q psy9769 705 CPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGIS 784 (1026)
Q Consensus 705 d~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~ 784 (1026)
|++++++.||+|..+.+.. +
T Consensus 177 d~~~~~ivLSrr~~l~~~~-~----------------------------------------------------------- 196 (486)
T PRK07899 177 DKNRNNVVLSRRAWLEQTQ-S----------------------------------------------------------- 196 (486)
T ss_pred ECCCCEEEEEhHHHHHhhh-H-----------------------------------------------------------
Confidence 9999999999997532110 0
Q ss_pred ccccceEEEecCCCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEE
Q psy9769 785 RQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLE 864 (1026)
Q Consensus 785 ~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~ 864 (1026)
..|. . .
T Consensus 197 --------------~~~~--------~----------------------~------------------------------ 202 (486)
T PRK07899 197 --------------EVRS--------E----------------------F------------------------------ 202 (486)
T ss_pred --------------HHHH--------H----------------------H------------------------------
Confidence 0000 0 0
Q ss_pred eecceeeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc-----ceeeCCccccccCcEEee--------cCeEEEeh
Q psy9769 865 SVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN-----EYVEGNKADIKVGDEVQA--------KNSIEVAF 931 (1026)
Q Consensus 865 ~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~-----~~~~~~~~~~kvG~~v~~--------~~~i~ls~ 931 (1026)
...+..|+.+.|+|+++++||+||+|+ |++||+|. ..+.+|.+.|++||+|+. ++||.||+
T Consensus 203 ----~~~lk~G~iv~G~V~~i~~~G~FVdlg--gv~Glv~~Sels~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSl 276 (486)
T PRK07899 203 ----LNQLQKGQVRKGVVSSIVNFGAFVDLG--GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSL 276 (486)
T ss_pred ----HHhccCCCEEEEEEEEEECCeEEEEEC--CEEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEE
Confidence 001446999999999999999999995 79999998 235577788999999983 78999999
Q ss_pred hhhhcccCCCCccccCC-CCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCC
Q psy9769 932 KSLYRIAQPLTSVKHTK-PGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 932 K~l~~~~~~~~~~~~~~-~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
|++..+ ||..|.+.+ +|+++.|+|+++++||+||++.+|++||+|.++|++.++.++.+.|++||+|+|+|++||++
T Consensus 277 K~~~~d--Pw~~~~~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e 354 (486)
T PRK07899 277 KATQED--PWQQFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLE 354 (486)
T ss_pred eecccc--chhhhHHhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECC
Confidence 997544 667777655 59999999999999999999999999999999999998999999999999999999999988
Q ss_pred eeeechhhhh
Q psy9769 1011 ELLLTEADEK 1020 (1026)
Q Consensus 1011 ~~~~~~~~~~ 1020 (1026)
+.+++.+-++
T Consensus 355 ~rrI~LSlK~ 364 (486)
T PRK07899 355 RRRISLSLKQ 364 (486)
T ss_pred CCEEEEEEEE
Confidence 7777644443
No 15
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=5.9e-36 Score=353.89 Aligned_cols=385 Identities=16% Similarity=0.218 Sum_probs=289.0
Q ss_pred ccccccCcccccccccccccceeeeecccceeeeeeccc-------cccCceEEEEEeeeeeccceeEEEEechHHHHhh
Q psy9769 559 NTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS-------VILGQIVTCMISKIKVAASMSILEVTLDEELIRS 631 (1026)
Q Consensus 559 ~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~-------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~ 631 (1026)
...+++|+++.|+|.+++++|++|++|.+ .+||+|.++ +++||++++.|.++++. .+.+.||..+.....
T Consensus 13 ~~~~~~G~~v~g~V~~i~~~~~~v~~g~k-~~g~i~~~E~~~~~~~~~vGd~i~~~V~~~~~~--~g~i~lS~~~~~~~~ 89 (516)
T TIGR00717 13 TEETRPGSIVKGTVVAINKDTVFVDVGLK-SEGRIPKEEFLDAPLEIQVGDEVEVYLDRVEDR--FGETVLSREKAQRHE 89 (516)
T ss_pred cccCCCCCEEEEEEEEEECCEEEEEcCCC-cEEEEEHHHhcCCccCCCCCCEEEEEEEEEeCC--CCcEEEEHHHhhhhH
Confidence 34689999999999999999999999877 599999755 68999999999999876 566888887533221
Q ss_pred hccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeeeccccc
Q psy9769 632 ANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYVCPRHF 709 (1026)
Q Consensus 632 ~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~vd~~~~ 709 (1026)
.+...-..+.+|.+++|+|.++.++|++|++ ++++||+|.++++... +..+.+|+++ +++|+.+|+.++
T Consensus 90 -----~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i--~g~~~flP~s~~~~~~~~~~~~~vG~~i--~~~v~~~~~~~~ 160 (516)
T TIGR00717 90 -----LWIKLEKAYEEGSIVEGKIVGKVKGGFIVDL--NGVEAFLPGSQVDVKPIKDLDSLIGKTL--KFKIIKLDQKRN 160 (516)
T ss_pred -----HHHHHHHHhhCCCeEEEEEEEEECCEEEEEE--CCEEEEEeHHHhcCcccCchhhhCCCEE--EEEEEEEECCCC
Confidence 1222334458999999999999999999999 6999999999998653 4567899999 999999999999
Q ss_pred eEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccc
Q psy9769 710 HVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLS 789 (1026)
Q Consensus 710 ~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~ 789 (1026)
++.+|+|+.+.+.. ...+......+++|+++++. |.++..+|+ ++.+||.+++.+
T Consensus 161 ~iv~Srk~~l~~~~-~~~~~~~~~~l~~G~~v~g~-V~~i~~~G~-------------------~V~l~g~~g~lp---- 215 (516)
T TIGR00717 161 NIVVSRRAYLEEER-SQAREELLENLKEGDVVKGV-VKNITDFGA-------------------FVDLGGVDGLLH---- 215 (516)
T ss_pred cEEEEHHHHHHHHH-HHHHHHHHHhccCCCEEEEE-EEEEECCeE-------------------EEEECCEEEEEE----
Confidence 99999999765422 12233344568899999988 888888884 444567777665
Q ss_pred eEEEecCCCCeeEEcccccccccCceEEE--ECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeec
Q psy9769 790 SVEMYSPERNTWEPVKDMLYKRSGAGVGV--LDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVA 867 (1026)
Q Consensus 790 ~~~~~d~~~~~w~~~~~~~~~r~~~~~~~--~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~ 867 (1026)
.+++++.+..+.... .++.+ ...+...|+++++-.. .+......++.
T Consensus 216 --------------~~e~s~~~~~~~~~~~~vG~~v-----------~v~Vl~~d~~~~~i~l------S~k~~~~~p~~ 264 (516)
T TIGR00717 216 --------------ITDMSWKRVKHPSEYVKVGQEV-----------KVKVIKFDKEKGRISL------SLKQLGEDPWE 264 (516)
T ss_pred --------------HHHcCCCCCCCHHHhccCCCEE-----------EEEEEEEECCCCcEEE------EEEecchhHHH
Confidence 444544443332221 13333 2334445555433111 00101111121
Q ss_pred ce-eeEeeCceeeeeEeEEEEeeeEEEeccceeeeecccc---e---eeCCccccccCcEEee--------cCeEEEehh
Q psy9769 868 ST-AEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCENE---Y---VEGNKADIKVGDEVQA--------KNSIEVAFK 932 (1026)
Q Consensus 868 ~~-~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~---~---~~~~~~~~kvG~~v~~--------~~~i~ls~K 932 (1026)
.. ..+..|+.+.|+|+++.++|+||++++ +++|++|.. + ..+|.+.|++||.++. ++++.||+|
T Consensus 265 ~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~-~v~g~v~~sels~~~~~~~~~~~~~vG~~v~v~V~~id~~~~~i~lS~k 343 (516)
T TIGR00717 265 AIEKKFPVGDKITGRVTNLTDYGVFVEIEE-GIEGLVHVSEMSWVKKNSHPSKVVKKGDEVEVMILDIDPERRRLSLGLK 343 (516)
T ss_pred HHHhhccCCCEEEEEEEEeeCCcEEEEeCC-CCEEEEEHHHcCCccccCCHHHhccCCCEEEEEEEEEcCCCCEEEEEeh
Confidence 11 135689999999999999999999998 999999972 2 2344566999999883 789999999
Q ss_pred hhhcccCCCCcccc-CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCccc-ccCcccccccCCEEEEEEEEEeCC
Q psy9769 933 SLYRIAQPLTSVKH-TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQAT-RTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 933 ~l~~~~~~~~~~~~-~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~-~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
++.. .||..+.+ ..+|+++.|+|++++++|+||+++++++||+|.++|+|.+ ..++.+.|++||.|+|+|+++|++
T Consensus 344 ~~~~--~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~ 421 (516)
T TIGR00717 344 QCKA--NPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKE 421 (516)
T ss_pred hccc--CcHHHHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCc
Confidence 9643 45555543 5669999999999999999999999999999999999954 456778999999999999999987
Q ss_pred eeee
Q psy9769 1011 ELLL 1014 (1026)
Q Consensus 1011 ~~~~ 1014 (1026)
+.++
T Consensus 422 ~~~i 425 (516)
T TIGR00717 422 KKRI 425 (516)
T ss_pred CCEE
Confidence 6555
No 16
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-33 Score=333.25 Aligned_cols=189 Identities=22% Similarity=0.364 Sum_probs=161.2
Q ss_pred cccceeeeeccCCCCCCCCccCCcEEEEEcCCC--CCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEecc
Q psy9769 297 GEVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQA--PKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGF 374 (1026)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~--~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 374 (1026)
..|..++.++.++..+ +.+..++.||++||.+ ...++++++|||.+++|..+++||.+|+++++++++|+||++||.
T Consensus 282 ~~W~~l~~mp~~r~~~-~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 282 MEYSVISTIPNHIINY-ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQ 360 (557)
T ss_pred CeEEECCCCCccccce-EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCc
Confidence 4455544555554433 3344689999999974 345788999999999999999999999999999999999999998
Q ss_pred CC-----CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCC------------------CCCEEEEEECC
Q psy9769 375 NG-----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSS------------------GLNSAEVYDPS 431 (1026)
Q Consensus 375 ~~-----~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~------------------~~~~v~~yd~~ 431 (1026)
++ ++++|||.+++|+.+++||.+|.++++++++|+||++||.++.. .++++++|||.
T Consensus 361 ~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 361 NGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred CCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 64 58999999999999999999999999999999999999976421 26789999999
Q ss_pred CCcEEEccCCCCCcceeEEEEECCEEEEEeCCC-------ceeeEEcCc-ccEEEeecCCCcc
Q psy9769 432 TEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDG-------RILGCVKEI-TDWGLIIELPNFL 486 (1026)
Q Consensus 432 ~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-------~~~~~~~~~-~~W~~~~~lP~~~ 486 (1026)
+++|+.+++|+.+|..+++++++|+|||+||.. .+..||+.+ ++|+.+++||.++
T Consensus 441 td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 441 NNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred CCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 999999999999999999999999999999953 235688888 7999999998744
No 17
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=2e-32 Score=311.41 Aligned_cols=305 Identities=17% Similarity=0.204 Sum_probs=246.2
Q ss_pred cccccccCcccccccccccccceeeeecccceeeeeeccc------------cccCceEEEEEeeeeeccceeEEEEech
Q psy9769 558 INTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS------------VILGQIVTCMISKIKVAASMSILEVTLD 625 (1026)
Q Consensus 558 ~~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~------------~~~G~~v~~~v~~~~~~~~~~~i~ls~~ 625 (1026)
+..++++|++++|+|.+++++|++|+++..+++||+|..+ +++|+.++|.|++++.. ++.+.||..
T Consensus 11 ~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~--~~~i~lS~k 88 (390)
T PRK06676 11 SVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDG--EGNLLLSKR 88 (390)
T ss_pred hhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECC--CCCEEEEHH
Confidence 4457899999999999999999999993345799999743 67999999999999988 557888887
Q ss_pred HHHHhhhccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeee
Q psy9769 626 EELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLY 703 (1026)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~ 703 (1026)
+..... .+......+.+|++++|+|.++.++|++|++ +|+.||+|.+++++.+ +....+|+++ +|+|+.
T Consensus 89 ~~~~~~-----~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~--~G~~gflp~~el~~~~~~~~~~~vG~~v--~~~Vl~ 159 (390)
T PRK06676 89 RLEAEK-----AWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV--EGVRGFIPASLISTRFVEDFSDFKGKTL--EVKIIE 159 (390)
T ss_pred Hhhhhh-----hHHHHHHhccCCCEEEEEEEEEECCeEEEEE--CCEEEEEEHHHcCCccCCChHHcCCCEE--EEEEEE
Confidence 642221 2233334558999999999999999999999 6789999999998866 2222489999 999999
Q ss_pred eccccceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCC
Q psy9769 704 VCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGI 783 (1026)
Q Consensus 704 vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~ 783 (1026)
+|++++++.||++.......
T Consensus 160 ~d~~~~~i~lS~k~~~~~~~------------------------------------------------------------ 179 (390)
T PRK06676 160 LDPEKNRVILSRRAVVEEER------------------------------------------------------------ 179 (390)
T ss_pred EECCCCEEEEEeHHHhhhhh------------------------------------------------------------
Confidence 99999999999998422100
Q ss_pred CccccceEEEecCCCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceE
Q psy9769 784 SRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVL 863 (1026)
Q Consensus 784 ~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~ 863 (1026)
.+.|. .
T Consensus 180 --------------~~~~~--------~---------------------------------------------------- 185 (390)
T PRK06676 180 --------------AAKKE--------E---------------------------------------------------- 185 (390)
T ss_pred --------------hhHHH--------H----------------------------------------------------
Confidence 00000 0
Q ss_pred EeecceeeEeeCceeeeeEeEEEEeeeEEEeccceeeeecccc-----eeeCCccccccCcEEee--------cCeEEEe
Q psy9769 864 ESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCENE-----YVEGNKADIKVGDEVQA--------KNSIEVA 930 (1026)
Q Consensus 864 ~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~-----~~~~~~~~~kvG~~v~~--------~~~i~ls 930 (1026)
....+..|+.+.|+|+++.++|+||+++ +++|++|.. +..++.+.|++||.+++ +++|.||
T Consensus 186 ----~~~~~~~G~~v~g~V~~v~~~G~fV~l~--~v~g~v~~sels~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS 259 (390)
T PRK06676 186 ----LLSSLKEGDVVEGTVARLTDFGAFVDIG--GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLS 259 (390)
T ss_pred ----HHhhCCCCCEEEEEEEEEecceEEEEeC--CeEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEE
Confidence 0001345999999999999999999995 799999982 34566678999999984 6899999
Q ss_pred hhhhhcccCCCCcc-ccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC
Q psy9769 931 FKSLYRIAQPLTSV-KHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 931 ~K~l~~~~~~~~~~-~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
+|++..+ ||..+ ++.++|+++.|+|+++.++|+||++++++.||+|.+++++.++.++.+.|++||+|+|+|+++|+
T Consensus 260 ~k~~~~~--~~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~ 337 (390)
T PRK06676 260 LKDTLPG--PWEGVEEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNE 337 (390)
T ss_pred EeecccC--ccccchhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEEC
Confidence 9996444 44443 45677999999999999999999999999999999999998888999999999999999999998
Q ss_pred Ceeeec
Q psy9769 1010 GELLLT 1015 (1026)
Q Consensus 1010 ~~~~~~ 1015 (1026)
++.+++
T Consensus 338 e~~~i~ 343 (390)
T PRK06676 338 EEKRIS 343 (390)
T ss_pred CCCEEE
Confidence 777765
No 18
>KOG1070|consensus
Probab=100.00 E-value=1.1e-31 Score=312.99 Aligned_cols=464 Identities=20% Similarity=0.267 Sum_probs=318.2
Q ss_pred cccccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccccccccCcccccccccccccceeeeecccceeeeeecc
Q psy9769 517 LSNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYD 596 (1026)
Q Consensus 517 ~~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~ 596 (1026)
....+.+|+.+.+.|.++..++ ....+..+++|..+|..++...+..|+++.+.|.|++|+|+++++|.....||+.+.
T Consensus 110 ~~k~isPG~~llgvIs~i~~~D-l~isv~~~l~g~v~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~ 188 (1710)
T KOG1070|consen 110 QLKNISPGMLLLGVISKINGND-LKISVKGGLNGYVLNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKS 188 (1710)
T ss_pred cccccCCcceeeeeeeeccccc-eeEEccCcccccccccccCHhHhhhhhhhccccccccccccchhcCCccccchhhhc
Confidence 4457899999999999997776 567788999999999999999999999999999999999999999999999997764
Q ss_pred c-------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcceeeccc
Q psy9769 597 S-------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKN 669 (1026)
Q Consensus 597 ~-------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~ 669 (1026)
+ +++||.+.|.|++.+.+ .+.+|.++.........+......++|.||++|++.|++++++|+.++| .
T Consensus 189 q~pn~~~~lKvGq~l~~~V~k~~s~----~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l 263 (1710)
T KOG1070|consen 189 QFPNLGAKLKVGQWLRVSVTKSTSE----RVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDI-L 263 (1710)
T ss_pred cCchhhhhcccCceEEEEEEeccCc----eEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEe-c
Confidence 3 99999999999998772 5778888888888888888889999999999999999999999999999 5
Q ss_pred cceeeccCcccccchhh---------------------------------------------------hhhccccccccc
Q psy9769 670 TQFKAFISPEAMSTAYN---------------------------------------------------AKYLTNKRVDLD 698 (1026)
Q Consensus 670 ~~~~gfi~~~~~~~~~~---------------------------------------------------~~~~~G~~~~~~ 698 (1026)
+||+||++..|++.... ..++.|..+ +
T Consensus 264 ~~ftG~l~~~hl~~~~~~~~~~~~l~~vi~~s~Rv~~~~f~~ka~ki~~l~~~v~ai~p~~~~~~~~~e~~k~G~~~--K 341 (1710)
T KOG1070|consen 264 NGFTGFLDKKHLPPFLRYFENQEKLGKVIHKSDRVFVVDFFDKASKILVLKAGVDAIAPSRIEKVLSFEIFKIGNKV--K 341 (1710)
T ss_pred ccccceeehhhCCchhhccccHHHhhcccchhhheeeechhhccceEEEecCccceEccCCcccccchhhcccCceE--E
Confidence 99999998888775331 223444444 5
Q ss_pred ceeeeeccccceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccc-cCccCCCCcc---c-cccccCCCC-
Q psy9769 699 CSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAV-NQNCSRPSFK---R-EKSSRNAEL- 772 (1026)
Q Consensus 699 ~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~-g~~~~~~~~~---~-~~~~~~~~~- 772 (1026)
|+||.+-+.......+++...+ +.++.....+..+.+.... + .+..+ -.++.++... . .++.....+
T Consensus 342 ~~vi~~~~~~~~~~~tl~~s~i-----e~k~~~~s~V~~r~l~~~~-~-svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~ 414 (1710)
T KOG1070|consen 342 CRVIDVLQMDSLALFTLKESAI-----EGKFSLVSDVSPRGLLKKP-V-SVDTEEVGLSPLPHVLGFEYADPSKKISDGK 414 (1710)
T ss_pred EEEEEEeeccceEEeecchhhc-----cCceEEEeccCCceEEEec-c-cCChhhhhccccchhhceeecCCCccccccc
Confidence 5555555555555555554322 4455556666666666655 2 33332 1112222110 0 000000000
Q ss_pred -eEE-EeccccCCCccc--------cceEEEecC---CCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeE
Q psy9769 773 -STI-GVGGYDGISRQC--------LSSVEMYSP---ERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVE 839 (1026)
Q Consensus 773 -~~~-~~gG~~~~~~~~--------~~~~~~~d~---~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~ 839 (1026)
-.| +.+-..-..... +..+.+|-- .+..| ++..+.++++ .|-+ +.....+++
T Consensus 415 di~~~vl~~~ak~~~vt~~v~~~sK~pvis~y~~~~~~t~~~--l~~v~q~~v~---------~~e~----~te~~~rv~ 479 (1710)
T KOG1070|consen 415 DIGFRVLTCKAKCGSVTLKVLCVSKLPVISMYADAVKLTHGM--LSKVPQGMVP---------IYEV----GTEVKSRVW 479 (1710)
T ss_pred ceeeEEeeccceeeeeeeeeeEeecCcceEEEeeccccCcch--hhccccCCCC---------ceec----CCcccCccc
Confidence 000 000000000000 000000000 01111 0001000000 0111 111333333
Q ss_pred EeeCCCCCeeecCCcccccccceEEeecceeeEeeCceeeeeEeEEEEeeeEEEeccceeeeecccce-----eeCCccc
Q psy9769 840 AYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCENEY-----VEGNKAD 914 (1026)
Q Consensus 840 ~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~~-----~~~~~~~ 914 (1026)
.|-...+...... +.+....++...-++..|+.+.|+|.+++..|+.|.+..+++.|++|... ...|...
T Consensus 480 ~v~~v~~v~~v~~-----~~svl~lk~~~~nDI~iG~~V~~~I~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~ 554 (1710)
T KOG1070|consen 480 QVFYVGKVVIVSV-----RESVLGLKFLRVNDIEIGQLVPGVIRKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRD 554 (1710)
T ss_pred eecccCcEEEEEE-----ehHhhcccccccccccccceeeeEEEEecCCcEEEEEecCceeeecChHhhhhcccccccce
Confidence 3333322211110 11111222233334889999999999999999999999867999999822 2234455
Q ss_pred cccCcEEe--------ecCeEEEehhh-hhcccCC-CCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCc
Q psy9769 915 IKVGDEVQ--------AKNSIEVAFKS-LYRIAQP-LTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ 984 (1026)
Q Consensus 915 ~kvG~~v~--------~~~~i~ls~K~-l~~~~~~-~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~ 984 (1026)
|++|..++ .++++.|++|. |++...| +++|++++||+++.|+|.++.++||||+|++|++||.|.++|+|
T Consensus 555 f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd 634 (1710)
T KOG1070|consen 555 FKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSD 634 (1710)
T ss_pred eeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhh
Confidence 66655544 48899999999 9888888 99999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 985 ATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 985 ~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
.++.+++++|++||+|.++|++||+++.+++
T Consensus 635 ~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~ 665 (1710)
T KOG1070|consen 635 DFVLSDSEHFPVGQTVRAKIVNVDDEKRRMP 665 (1710)
T ss_pred hhhcChhhhcccccEEEEEEEecCchhceee
Confidence 9999999999999999999999999988875
No 19
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=305.23 Aligned_cols=325 Identities=17% Similarity=0.280 Sum_probs=218.1
Q ss_pred eechhhHHHHHHHHHhcCchhHHhHHHHhhhcccC------------CcchhhHHHhhhhc---CchhHHHHHHhhhhh-
Q psy9769 129 YVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLH------------PTNCLGIRAFADLH---SCLDLLSTAENYIEL- 192 (1026)
Q Consensus 129 ~i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~------------~~n~~~~~~~a~~~---~~~~L~~~~~~~i~~- 192 (1026)
.++.+|+.+++.+|+.+.+..|.+.|.+||..++. .+....++.- +.. .-..+.++++.++..
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~~ll~~-~~L~v~~E~~v~~av~~W~~~~ 182 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELIKILSD-DKLNVSSEDVVLEIIIKWLTSK 182 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHHHHhcC-CCcCcCCHHHHHHHHHHHHhcC
Confidence 37899999999999999999999999999987642 1111122211 111 223467777777733
Q ss_pred ------hhhheecccccccCCHhhHhceec------cccccccchhhHHHHHHHHHhcChhHHHHHHHHHHhhcc--cCC
Q psy9769 193 ------HFAEIVECEEFLSLSHEQVLGLIS------SDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVR--LPL 258 (1026)
Q Consensus 193 ------~~~~l~~~~~f~~L~~~~l~~ll~------~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~vr--~~~ 258 (1026)
++.++++.-+|..|+.+.+..+.. ++.+. .++. .. +.+.+.....+ .+.
T Consensus 183 ~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-~~---------------~~~~~~~~~~~~~~~~ 245 (534)
T PHA03098 183 KNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV-FNKR-CI---------------KIIYSKKYNLNKILPR 245 (534)
T ss_pred hhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-cccc-ch---------------HHHHHHHhcccCCCcC
Confidence 445677777777777777766543 22221 1111 00 01111100000 000
Q ss_pred CCHHHHHhhccccceeccCccchhhHHHHhheeeeeeccccceee-eeccCCCCCCCCccCCcEEEEEcCCCC--CCCcE
Q psy9769 259 LSEDYLIQRVEEETVFKNDIRCKDYLIEALKYHILVKKGEVNKLT-LVRTPRTKPRQPLRVPKVMLVVGGQAP--KAIRS 335 (1026)
Q Consensus 259 l~~~~l~~~~~~~~l~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~GG~~~--~~~~~ 335 (1026)
... . ...++...... . .... ..+....++.+. +.+.|.......+..++.||++||.+. ...++
T Consensus 246 ~~~------~-~~~~~~~~g~~-~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~ 312 (534)
T PHA03098 246 SST------F-GSIIYIHITMS-I---FTYN--YITNYSPLSEINTIIDIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNS 312 (534)
T ss_pred ccC------C-CcceEeecccc-h---hhce--eeecchhhhhcccccCccccccceEEEECCEEEEECCCcCCCCeecc
Confidence 000 0 00000000000 0 0000 000111122222 212222222234456899999999863 34578
Q ss_pred EEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCC-----CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEE
Q psy9769 336 VECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLI 410 (1026)
Q Consensus 336 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 410 (1026)
+++||+.+++|..+++||.+|.+|++++++++||++||.++ ++++||+.+++|+.+++||.+|++|++++++++|
T Consensus 313 v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~i 392 (534)
T PHA03098 313 VVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLI 392 (534)
T ss_pred EEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEE
Confidence 99999999999999999999999999999999999999763 6889999999999999999999999999999999
Q ss_pred EEEeccCC-CCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCC---------ceeeEEcCcccEEEee
Q psy9769 411 YAVGGFDG-SSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDG---------RILGCVKEITDWGLII 480 (1026)
Q Consensus 411 yv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~---------~~~~~~~~~~~W~~~~ 480 (1026)
|++||... ...++++++|||.+++|+.++++|.+|.+|++++++++||++||.. ....||+.+++|..++
T Consensus 393 Yv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 393 YVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 99999743 3347899999999999999999999999999999999999999953 2556777788888887
Q ss_pred cCCC
Q psy9769 481 ELPN 484 (1026)
Q Consensus 481 ~lP~ 484 (1026)
++|.
T Consensus 473 ~~~~ 476 (534)
T PHA03098 473 SLNF 476 (534)
T ss_pred CCCc
Confidence 7764
No 20
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=99.97 E-value=7.2e-31 Score=313.77 Aligned_cols=310 Identities=18% Similarity=0.245 Sum_probs=249.3
Q ss_pred cccccccCcccccccccccccceeeeecccceeeeeeccc------------cccCceEEEEEeeeeeccceeEEEEech
Q psy9769 558 INTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS------------VILGQIVTCMISKIKVAASMSILEVTLD 625 (1026)
Q Consensus 558 ~~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~------------~~~G~~v~~~v~~~~~~~~~~~i~ls~~ 625 (1026)
....+++|++++|+|.+++++|++|++|.+ ..||+|..+ +++|+.+++.|++++.. .+.+.||.+
T Consensus 296 ~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~-~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~--~g~i~LS~k 372 (647)
T PRK00087 296 LEKQIRRGDIVKGTVVSVNENEVFVDVGYK-SEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDE--DGYVVLSKK 372 (647)
T ss_pred HHhhccCCCEEEEEEEEEECCEEEEEECCC-eEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECC--CCcEEEEee
Confidence 456889999999999999999999999754 689999743 78999999999999887 457888877
Q ss_pred HHHHhhhccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeee
Q psy9769 626 EELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLY 703 (1026)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~ 703 (1026)
+..... .+....+.+.+|+++.|+|.++.++|++|++ ++++||+|.+++++.+ +....+|+++ +|+||+
T Consensus 373 ~~~~~~-----~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~l--ggi~gfiP~sel~~~~~~d~~~~vG~~v--~v~Vl~ 443 (647)
T PRK00087 373 EADREK-----AWKELEEAFENGEPVKGKVKEVVKGGLLVDY--GGVRAFLPASHVELGYVEDLSEYKGQEL--EVKIIE 443 (647)
T ss_pred hhcchh-----HHHHHHHHhhCCCEEEEEEEEEECCeEEEEE--CCEEEEEEHHHhCccccCCHHHhCCCEE--EEEEEE
Confidence 543221 1222334568999999999999999999999 5799999999998876 2222499999 999999
Q ss_pred eccccce-EEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccC
Q psy9769 704 VCPRHFH-VYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDG 782 (1026)
Q Consensus 704 vd~~~~~-v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~ 782 (1026)
+|+++++ +.+|++..+.... ..++
T Consensus 444 vd~e~~~~l~lS~k~~~~~~~-~~~~------------------------------------------------------ 468 (647)
T PRK00087 444 FNRKRRKKVVLSRKAILEEEK-EKKK------------------------------------------------------ 468 (647)
T ss_pred EEcCCCcEEEEEeHHHhhhhh-hhHH------------------------------------------------------
Confidence 9999988 9999988422100 0000
Q ss_pred CCccccceEEEecCCCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccce
Q psy9769 783 ISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAV 862 (1026)
Q Consensus 783 ~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~ 862 (1026)
...|
T Consensus 469 ---------------~~~~------------------------------------------------------------- 472 (647)
T PRK00087 469 ---------------EETW------------------------------------------------------------- 472 (647)
T ss_pred ---------------HHHH-------------------------------------------------------------
Confidence 0000
Q ss_pred EEeecceeeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc-----ceeeCCccccccCcEEee--------cCeEEE
Q psy9769 863 LESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN-----EYVEGNKADIKVGDEVQA--------KNSIEV 929 (1026)
Q Consensus 863 ~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~-----~~~~~~~~~~kvG~~v~~--------~~~i~l 929 (1026)
..+..|+.+.|+|+++.++|+||++ + +++|++|. .+..++.+.|++||.++. +++|.|
T Consensus 473 -------~~l~~G~iV~g~V~~v~~~G~fV~l-~-gv~Gll~~sels~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~l 543 (647)
T PRK00087 473 -------NSLEEGDVVEGEVKRLTDFGAFVDI-G-GVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSL 543 (647)
T ss_pred -------HhCCCCCEEEEEEEEEeCCcEEEEE-C-CEEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEE
Confidence 0123599999999999999999999 5 89999998 224566678999999984 689999
Q ss_pred ehhhhhcccCCCCccc-cCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEe
Q psy9769 930 AFKSLYRIAQPLTSVK-HTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 930 s~K~l~~~~~~~~~~~-~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd 1008 (1026)
|+|++..+ ||.++. +.++|+++.|+|++++++|+||++.++++||+|.+++++.+++++.+.|++||+|+|+|+++|
T Consensus 544 S~K~~~~~--p~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id 621 (647)
T PRK00087 544 SLKKLLPD--PWENVEEKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVD 621 (647)
T ss_pred EeeccccC--hhhhhhhhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEe
Confidence 99996554 444443 456799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeechhhhhh
Q psy9769 1009 DGELLLTEADEKL 1021 (1026)
Q Consensus 1009 ~~~~~~~~~~~~~ 1021 (1026)
+++.++..+.+++
T Consensus 622 ~e~~rI~lslk~~ 634 (647)
T PRK00087 622 PEEKRIRLSIKEV 634 (647)
T ss_pred CCCCEEEEEEeec
Confidence 8777776544444
No 21
>PLN02153 epithiospecifier protein
Probab=99.97 E-value=5.7e-29 Score=279.27 Aligned_cols=158 Identities=21% Similarity=0.379 Sum_probs=132.2
Q ss_pred eccCCCCCCCCccCCcEEEEEcCCCC---CCCcEEEEEECCCCcEEEcCCCC-ccc---cceeeEEECCEEEEEeccC--
Q psy9769 305 VRTPRTKPRQPLRVPKVMLVVGGQAP---KAIRSVECYDFKTERWQSVAEMP-TRR---CRAGLVFLHEKVYAVGGFN-- 375 (1026)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~v~GG~~~---~~~~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~~~~~iyv~GG~~-- 375 (1026)
+|.||..+... ..++.|||+||... ...+++++||+.+++|+.+++++ .|| .+|++++++++||++||.+
T Consensus 19 ~P~pR~~h~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~ 97 (341)
T PLN02153 19 GPGPRCSHGIA-VVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEK 97 (341)
T ss_pred CCCCCCcceEE-EECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCC
Confidence 45666665443 46889999999742 23578999999999999988764 343 3788999999999999975
Q ss_pred ---CCeEEEeCCCCeEEeCCCC-----cCCcceeEEEEECCEEEEEeccCCCC------CCCEEEEEECCCCcEEEccCC
Q psy9769 376 ---GSLRVYDPSTNEWSSAPPM-----EARRSTLGVAVLNSLIYAVGGFDGSS------GLNSAEVYDPSTEKWNMIAPM 441 (1026)
Q Consensus 376 ---~~~~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~~~~W~~~~~~ 441 (1026)
+++++||+.+++|+.+++| |.+|..|++++++++|||+||.+... .++++++||+.+++|+.++++
T Consensus 98 ~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~ 177 (341)
T PLN02153 98 REFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDP 177 (341)
T ss_pred CccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCC
Confidence 3689999999999999877 88999999999999999999986432 357899999999999999876
Q ss_pred C---CCcceeEEEEECCEEEEEeCC
Q psy9769 442 S---TRRSSVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 442 p---~~r~~~~~~~~~~~lyv~GG~ 463 (1026)
+ .+|.+|++++++++||++||.
T Consensus 178 ~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 178 GENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCCCCCCcceEEEECCeEEEEecc
Confidence 4 789999999999999999984
No 22
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=3.9e-28 Score=282.19 Aligned_cols=163 Identities=23% Similarity=0.373 Sum_probs=135.5
Q ss_pred CCcEEEEEcCCCCCCCcEEEEE--ECCC----CcEEEcCC---CCccccceeeEEECCEEEEEeccC-------CCeEEE
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECY--DFKT----ERWQSVAE---MPTRRCRAGLVFLHEKVYAVGGFN-------GSLRVY 381 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~y--d~~~----~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~-------~~~~~y 381 (1026)
.+++|+.|+|.....++++-.| ++.+ ++|..+++ +|.+|++|+++++++.||++||.. +++++|
T Consensus 119 ~~~~ivgf~G~~~~~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~y 198 (470)
T PLN02193 119 QGGKIVGFHGRSTDVLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVF 198 (470)
T ss_pred cCCeEEEEeccCCCcEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEE
Confidence 3678999999876666666555 6644 89998876 688999999999999999999964 358999
Q ss_pred eCCCCeEEeCCC---CcC-CcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCC---CCCcceeEEEEEC
Q psy9769 382 DPSTNEWSSAPP---MEA-RRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPM---STRRSSVGVGVLN 454 (1026)
Q Consensus 382 d~~~~~W~~~~~---~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~ 454 (1026)
|+.+++|+.+++ +|. +|.+|++++++++||++||.++...++++++||+.+++|+.++++ |.||+.|++++++
T Consensus 199 D~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~ 278 (470)
T PLN02193 199 DLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE 278 (470)
T ss_pred ECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC
Confidence 999999998764 343 356888999999999999998777789999999999999999888 8999999999999
Q ss_pred CEEEEEeCCCc------eeeEEcCcccEEEee
Q psy9769 455 GCLYAENLDGR------ILGCVKEITDWGLII 480 (1026)
Q Consensus 455 ~~lyv~GG~~~------~~~~~~~~~~W~~~~ 480 (1026)
++|||+||.+. ...||+.+++|..++
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~ 310 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCS 310 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCC
Confidence 99999999542 345666777777664
No 23
>KOG4350|consensus
Probab=99.97 E-value=2.8e-30 Score=265.31 Aligned_cols=234 Identities=24% Similarity=0.377 Sum_probs=215.5
Q ss_pred CchHHHHHHHHHHHhcCCCccEEEEECCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhheec
Q psy9769 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDYVYS 125 (1026)
Q Consensus 47 ~~~~~l~~~l~~l~~~~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt 125 (1026)
..+..+.+.+.+++-++.++||+|++++++|+|||.|||++|.|||+|+. +|.|+.+..|.|++-..++|+.+|+||||
T Consensus 26 ~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYt 105 (620)
T KOG4350|consen 26 AISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYT 105 (620)
T ss_pred hhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhh
Confidence 34455678899999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ceeeec---hhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccc
Q psy9769 126 CEIYVT---EENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEE 202 (1026)
Q Consensus 126 g~~~i~---~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~ 202 (1026)
|++.++ .+.+++.|.+|++|++.+|..+..+||++.+..+|++.++..|..|++.+|...|+.|+.+|..+++.++.
T Consensus 106 g~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~s 185 (620)
T KOG4350|consen 106 GKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPS 185 (620)
T ss_pred cceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcc
Confidence 999764 57789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCHhhHhceeccccccccchhhHHHHHHHHHhcChhHHHHHHHHHHhhcccCCCCHHHHHhhccccceeccCccchh
Q psy9769 203 FLSLSHEQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKNDIRCKD 282 (1026)
Q Consensus 203 f~~L~~~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~~~~ll~~vr~~~l~~~~l~~~~~~~~l~~~~~~~~~ 282 (1026)
|..|+.+.|.++|.+|.+.. .|.++|.|+..|.++|.++ ....+++.||+|+|+...|.+.+.+.+++.- +
T Consensus 186 Fn~LSk~sL~e~l~RDsFfA-pE~~IFlAv~~W~~~Nske---~~k~~~~~VRLPLm~lteLLnvVRPsGllsp-----D 256 (620)
T KOG4350|consen 186 FNRLSKDSLKELLARDSFFA-PELKIFLAVRSWHQNNSKE---ASKVLLELVRLPLMTLTELLNVVRPSGLLSP-----D 256 (620)
T ss_pred hhhhhHHHHHHHHhhhcccc-hHHHHHHHHHHHHhcCchh---hHHHHHHHHhhhhccHHHHHhccCcccCcCH-----H
Confidence 99999999999999998865 8999999999999999854 4567999999999999999999988887752 4
Q ss_pred hHHHHhh
Q psy9769 283 YLIEALK 289 (1026)
Q Consensus 283 ~i~~a~~ 289 (1026)
.|.+|..
T Consensus 257 ~iLDAI~ 263 (620)
T KOG4350|consen 257 TILDAIE 263 (620)
T ss_pred HHHHHHH
Confidence 4556554
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=2.9e-28 Score=274.79 Aligned_cols=154 Identities=21% Similarity=0.262 Sum_probs=128.8
Q ss_pred ccCCCCCCCCccCCcEEEEEcCCCCCCCcEEEEEEC--CCCcEEEcCCCC-ccccceeeEEECCEEEEEeccC-------
Q psy9769 306 RTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDF--KTERWQSVAEMP-TRRCRAGLVFLHEKVYAVGGFN------- 375 (1026)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~yd~--~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~------- 375 (1026)
|.|+..+. .+..++.|||+||.. .+++++||+ .+++|..+++|| .+|.++++++++++|||+||+.
T Consensus 5 p~~~~~~~-~~~~~~~vyv~GG~~---~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~ 80 (346)
T TIGR03547 5 PVGFKNGT-GAIIGDKVYVGLGSA---GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGS 80 (346)
T ss_pred CccccCce-EEEECCEEEEEcccc---CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCc
Confidence 34444433 335689999999974 267899996 678999999999 5899999999999999999974
Q ss_pred ----CCeEEEeCCCCeEEeCC-CCcCCcceeEEE-EECCEEEEEeccCCCC-----------------------------
Q psy9769 376 ----GSLRVYDPSTNEWSSAP-PMEARRSTLGVA-VLNSLIYAVGGFDGSS----------------------------- 420 (1026)
Q Consensus 376 ----~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~iyv~GG~~~~~----------------------------- 420 (1026)
.++++||+.+++|+.++ ++|.+|.+++++ +++++||++||.++..
T Consensus 81 ~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 81 PQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred ceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 25889999999999997 567778777776 7899999999986321
Q ss_pred -----CCCEEEEEECCCCcEEEccCCCC-CcceeEEEEECCEEEEEeCC
Q psy9769 421 -----GLNSAEVYDPSTEKWNMIAPMST-RRSSVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 421 -----~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~ 463 (1026)
.++++++|||.+++|+.+++||. +|..+++++++++|||+||.
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 14789999999999999999996 78999999999999999983
No 25
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.96 E-value=1e-27 Score=271.86 Aligned_cols=181 Identities=22% Similarity=0.280 Sum_probs=144.9
Q ss_pred eeeeccCCCCCCCCccCCcEEEEEcCCCCCCCcEEEEEECC--CCcEEEcCCCC-ccccceeeEEECCEEEEEeccCC--
Q psy9769 302 LTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFK--TERWQSVAEMP-TRRCRAGLVFLHEKVYAVGGFNG-- 376 (1026)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~yd~~--~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~-- 376 (1026)
++.+|.|+... +.+..++.|||+||... +.+++||+. +++|..+++|| .+|.++++++++++|||+||+..
T Consensus 22 l~~lP~~~~~~-~~~~~~~~iyv~gG~~~---~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~ 97 (376)
T PRK14131 22 LPDLPVPFKNG-TGAIDNNTVYVGLGSAG---TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN 97 (376)
T ss_pred CCCCCcCccCC-eEEEECCEEEEEeCCCC---CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence 34455555544 34557899999999642 468899986 47899999998 58999999999999999999742
Q ss_pred ---------CeEEEeCCCCeEEeCCC-CcCCcceeEEEE-ECCEEEEEeccCCC--------------------------
Q psy9769 377 ---------SLRVYDPSTNEWSSAPP-MEARRSTLGVAV-LNSLIYAVGGFDGS-------------------------- 419 (1026)
Q Consensus 377 ---------~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~-------------------------- 419 (1026)
++++||+.+++|+.+++ +|.+|.+|++++ .+++||++||.+..
T Consensus 98 ~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~ 177 (376)
T PRK14131 98 SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAY 177 (376)
T ss_pred CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHH
Confidence 58899999999999985 477777788777 89999999997531
Q ss_pred --------CCCCEEEEEECCCCcEEEccCCCC-CcceeEEEEECCEEEEEeCCCc---------eeeEEcCcccEEEeec
Q psy9769 420 --------SGLNSAEVYDPSTEKWNMIAPMST-RRSSVGVGVLNGCLYAENLDGR---------ILGCVKEITDWGLIIE 481 (1026)
Q Consensus 420 --------~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~lyv~GG~~~---------~~~~~~~~~~W~~~~~ 481 (1026)
...+++++|||.+++|+.++++|. +|.+++++.++++||++||... ...|++..++|..+++
T Consensus 178 ~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~ 257 (376)
T PRK14131 178 FDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD 257 (376)
T ss_pred hcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC
Confidence 024789999999999999999996 7888999999999999999421 1234556788999998
Q ss_pred CCCcc
Q psy9769 482 LPNFL 486 (1026)
Q Consensus 482 lP~~~ 486 (1026)
||.++
T Consensus 258 ~p~~~ 262 (376)
T PRK14131 258 LPPAP 262 (376)
T ss_pred CCCCC
Confidence 87643
No 26
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=7.9e-28 Score=268.14 Aligned_cols=146 Identities=15% Similarity=0.206 Sum_probs=126.9
Q ss_pred CCcEEEEEcCCCCC-----------CCcEEEEEE-CCC-CcEEEcCCCCccccceeeEEECCEEEEEeccCC-----CeE
Q psy9769 318 VPKVMLVVGGQAPK-----------AIRSVECYD-FKT-ERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----SLR 379 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~-----------~~~~~~~yd-~~~-~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~ 379 (1026)
+++.||++||.+.. ..+++++|+ +.. .+|..+++||.+|.+++++++++.||++||.++ +++
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~ 91 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVY 91 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEE
Confidence 68899999997532 235778775 332 379999999999999999999999999999753 688
Q ss_pred EEeCCCCeE----EeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCC-CCcceeEEEEEC
Q psy9769 380 VYDPSTNEW----SSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS-TRRSSVGVGVLN 454 (1026)
Q Consensus 380 ~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~ 454 (1026)
+||+.+++| +.+++||.+|..|++++++++||++||..+...++++++|||.+++|+.+++|| .+|..+++++++
T Consensus 92 ~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 171 (323)
T TIGR03548 92 RITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQ 171 (323)
T ss_pred EEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEEC
Confidence 999999987 788999999999999999999999999865556899999999999999999998 589999999999
Q ss_pred CEEEEEeCC
Q psy9769 455 GCLYAENLD 463 (1026)
Q Consensus 455 ~~lyv~GG~ 463 (1026)
++|||+||.
T Consensus 172 ~~iYv~GG~ 180 (323)
T TIGR03548 172 NELYVFGGG 180 (323)
T ss_pred CEEEEEcCC
Confidence 999999983
No 27
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=99.96 E-value=5.4e-29 Score=287.55 Aligned_cols=350 Identities=16% Similarity=0.164 Sum_probs=254.9
Q ss_pred ccCCCcEEEEEEEEeeecccCceeeEEeecccccccccc--ccccccCcccccccccccccceeeeecccceeeeeeccc
Q psy9769 520 LFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYI--NTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS 597 (1026)
Q Consensus 520 ~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~--~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~ 597 (1026)
.+++||.+.+.|++.++ ..+.||..... ...+. ..++..|++++|.|.++.++|++|+++ ++.||+|.++
T Consensus 75 ~~~~G~~i~~~Vi~~~~-----~~~~lS~~~~~-~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~--g~~~flP~s~ 146 (491)
T PRK13806 75 TVAVGDEVELYVVSVNG-----QEIRLSKALSG-QGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL--GRRAFCPVSQ 146 (491)
T ss_pred cccCCCEEEEEEEEEcC-----CEEEEEhHHhh-hhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC--CEEEEEEHHH
Confidence 47999999999998753 25777754331 12222 247789999999999999999999985 6899999754
Q ss_pred ----------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcceeec
Q psy9769 598 ----------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKL 667 (1026)
Q Consensus 598 ----------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~ 667 (1026)
..+|+.++|+|++++.. ++.+.+|.++ +........+...+.++.+|++++|+|.++.++|++|++
T Consensus 147 ~~~~~~~~~~~~vG~~i~~~V~~id~~--~~~v~lSrk~--~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l 222 (491)
T PRK13806 147 IDLRYVEDPESYVGQTFQFLITRVEEN--GRNIVVSRRA--LLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVEL 222 (491)
T ss_pred hccccCCChHHcCCCeEEEEEEEEECC--CCeEEEEeeh--hhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEc
Confidence 23899999999999987 6667787643 222222233344566789999999999999999999999
Q ss_pred cccceeeccCcccccchh----hhhhcccccccccceeeeecccc----ceEEeechhhhhhcccCCCCcceeeeeceee
Q psy9769 668 KNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRH----FHVYLSCNEALLERQTGRPEFSVCISIVKKT 739 (1026)
Q Consensus 668 ~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~----~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~ 739 (1026)
.+++.||+|.+++++.+ .+.|++|+++ +|+|+.+|+.+ +++.||+|+. .++||..+.+.++.|+
T Consensus 223 -~~gv~g~v~~sels~~~~~~~~~~~~vGd~i--~vkVl~id~~~~~~~~ri~lS~K~~-----~~~p~~~~~~~~~~G~ 294 (491)
T PRK13806 223 -APGVEGMVHISELSWSRVQKADEAVSVGDTV--RVKVLGIERAKKGKGLRISLSIKQA-----GGDPWDTVGDRLKAGD 294 (491)
T ss_pred -CCCcEEEEEHHHCCCccccChhHhcCCCCEE--EEEEEEEecccCCcceEEEEEehhh-----hcccchhhhccCCCCC
Confidence 36899999999999876 5668999999 99999999987 5799999996 5678988899999999
Q ss_pred eeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEccccccc-ccCceEEE
Q psy9769 740 IFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYK-RSGAGVGV 818 (1026)
Q Consensus 740 v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~-r~~~~~~~ 818 (1026)
++.+. |+++..+|+|+++.. |.+|+.| +++++|. |..+....
T Consensus 295 ~v~G~-V~~v~~~G~fV~l~~------------------gv~Glvh------------------~sels~~~~~~~~~~~ 337 (491)
T PRK13806 295 KVTGK-VVRLAPFGAFVEILP------------------GIEGLVH------------------VSEMSWTRRVNKPEDV 337 (491)
T ss_pred EEEEE-EEEEeCceEEEEeCC------------------CcEEEEE------------------HHHcCcccccCCHHHc
Confidence 99998 999999997665543 6667666 4444442 21111111
Q ss_pred --ECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecce-eeEeeCceeeeeEeEEEEeeeEEEec
Q psy9769 819 --LDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVAST-AEVNLGDEVSCVVKGISVRGVIAQVG 895 (1026)
Q Consensus 819 --~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~-~~~~~G~~~~g~v~~i~~~g~~v~l~ 895 (1026)
.++.+ ...+...|++.++.... .+.....+|... ..+..|+.++|+|+++++||+||++.
T Consensus 338 ~~~Gd~v-----------~vkVl~iD~e~~ri~Ls------~K~~~~~p~~~~~~~~~vG~~v~G~V~~i~~~G~FV~l~ 400 (491)
T PRK13806 338 VAPGDAV-----------AVKIKDIDPAKRRISLS------LRDAEGDPWADVAERFAPGTTVTGTVEKRAQFGLFVNLA 400 (491)
T ss_pred CCCCCEE-----------EEEEEEEEccCCEEEEE------EeecccChhHHhhhhCCCCCEEEEEEEEEecCceEEEcC
Confidence 13333 23344445554332211 000111112111 13457999999999999999999999
Q ss_pred cceeeeecccce-----eeCCccccccCcEEee--------cCeEEEehhhhh-c--ccCCCCcc
Q psy9769 896 YYKLKATCENEY-----VEGNKADIKVGDEVQA--------KNSIEVAFKSLY-R--IAQPLTSV 944 (1026)
Q Consensus 896 ~~~~~~~~~~~~-----~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~-~--~~~~~~~~ 944 (1026)
+ |++||||... ..++...|++||++++ ++||+||+|++. . ...||..|
T Consensus 401 ~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~~~~~~~~~~~~~~ 464 (491)
T PRK13806 401 P-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGAAGSGADDDDWKQF 464 (491)
T ss_pred C-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehhhhhhhhhhHHHhh
Confidence 8 9999999922 3456688999999983 789999999852 2 22346666
No 28
>PLN02193 nitrile-specifier protein
Probab=99.96 E-value=5.2e-27 Score=272.75 Aligned_cols=176 Identities=19% Similarity=0.341 Sum_probs=148.4
Q ss_pred ccCCCCCCCCccCCcEEEEEcCCCC---CCCcEEEEEECCCCcEEEcCC---CCc-cccceeeEEECCEEEEEeccC---
Q psy9769 306 RTPRTKPRQPLRVPKVMLVVGGQAP---KAIRSVECYDFKTERWQSVAE---MPT-RRCRAGLVFLHEKVYAVGGFN--- 375 (1026)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~v~GG~~~---~~~~~~~~yd~~~~~W~~~~~---~p~-~r~~~~~~~~~~~iyv~GG~~--- 375 (1026)
|.||..|.+. .+++.||++||... ...+++++||+.+++|+.+++ +|. +|.+|++++++++||++||++
T Consensus 163 P~pR~~h~~~-~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~ 241 (470)
T PLN02193 163 PGLRCSHGIA-QVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR 241 (470)
T ss_pred CCCccccEEE-EECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC
Confidence 4566666544 36889999999742 234679999999999998764 344 356889999999999999975
Q ss_pred --CCeEEEeCCCCeEEeCCCC---cCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccC---CCCCcce
Q psy9769 376 --GSLRVYDPSTNEWSSAPPM---EARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP---MSTRRSS 447 (1026)
Q Consensus 376 --~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~ 447 (1026)
+++++||+.+++|+.++++ |.+|+.|++++++++||++||.+....++++++||+.+++|+.+++ +|.+|..
T Consensus 242 ~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~ 321 (470)
T PLN02193 242 QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG 321 (470)
T ss_pred CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC
Confidence 4799999999999999887 8999999999999999999999877778999999999999998874 6789999
Q ss_pred eEEEEECCEEEEEeCCC-----ceeeEEcCcccEEEeecC
Q psy9769 448 VGVGVLNGCLYAENLDG-----RILGCVKEITDWGLIIEL 482 (1026)
Q Consensus 448 ~~~~~~~~~lyv~GG~~-----~~~~~~~~~~~W~~~~~l 482 (1026)
|++++++++||++||.. .+..||+.+++|+.+.++
T Consensus 322 ~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 322 AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccC
Confidence 99999999999999943 456688888889888655
No 29
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.5e-27 Score=277.99 Aligned_cols=171 Identities=18% Similarity=0.299 Sum_probs=147.8
Q ss_pred ccceeeeeccCCCCCCCCccCCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCC-
Q psy9769 298 EVNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG- 376 (1026)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~- 376 (1026)
.|..++.++.||..+. .+..++.||++||.+. .+++++|||.+++|..+++||.+|.+|++++++|+||++||.++
T Consensus 298 ~W~~~~~m~~~r~~~~-~v~~~~~iYviGG~~~--~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~ 374 (480)
T PHA02790 298 NWIPIPPMNSPRLYAS-GVPANNKLYVVGGLPN--PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET 374 (480)
T ss_pred EEEECCCCCchhhcce-EEEECCEEEEECCcCC--CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC
Confidence 3444444455554433 3346899999999753 36789999999999999999999999999999999999999764
Q ss_pred --CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEEC
Q psy9769 377 --SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLN 454 (1026)
Q Consensus 377 --~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 454 (1026)
++++|||.+++|+.+++||.+|..+++++++|+||++||. +++|||.+++|+.+++||.+|..+++++++
T Consensus 375 ~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~ 446 (480)
T PHA02790 375 DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVD 446 (480)
T ss_pred CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEEC
Confidence 5889999999999999999999999999999999999983 689999999999999999999999999999
Q ss_pred CEEEEEeCCC------ceeeEEcCcccEEEe
Q psy9769 455 GCLYAENLDG------RILGCVKEITDWGLI 479 (1026)
Q Consensus 455 ~~lyv~GG~~------~~~~~~~~~~~W~~~ 479 (1026)
|+||++||.. .+..||+.+++|+.+
T Consensus 447 ~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 447 NKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9999999953 355688889999875
No 30
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=1.3e-25 Score=254.83 Aligned_cols=120 Identities=18% Similarity=0.268 Sum_probs=103.0
Q ss_pred cEEEcCCCCccccceeeEEECCEEEEEeccCC-CeEEEeCC--CCeEEeCCCCc-CCcceeEEEEECCEEEEEeccCCC-
Q psy9769 345 RWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-SLRVYDPS--TNEWSSAPPME-ARRSTLGVAVLNSLIYAVGGFDGS- 419 (1026)
Q Consensus 345 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~yd~~--~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~- 419 (1026)
.|+.+++||.+|..+++++++++|||+||..+ .+++||+. +++|..+++|| .+|.++++++++++||++||.+..
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~ 97 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTN 97 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCC
Confidence 47788999999998899999999999999754 57889986 47899999998 589999999999999999998641
Q ss_pred -----CCCCEEEEEECCCCcEEEccC-CCCCcceeEEEE-ECCEEEEEeCCC
Q psy9769 420 -----SGLNSAEVYDPSTEKWNMIAP-MSTRRSSVGVGV-LNGCLYAENLDG 464 (1026)
Q Consensus 420 -----~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~ 464 (1026)
..++++++||+.+++|+.+++ +|.++.+|++++ .+++||++||.+
T Consensus 98 ~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 98 SEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 236899999999999999985 477777788777 899999999964
No 31
>KOG4693|consensus
Probab=99.94 E-value=4.7e-26 Score=222.84 Aligned_cols=158 Identities=23% Similarity=0.374 Sum_probs=131.7
Q ss_pred cCCCCCCCCccCCcEEEEEcCCC------CCCCcEEEEEECCCCcEEEcCC-------------CCccccceeeEEECCE
Q psy9769 307 TPRTKPRQPLRVPKVMLVVGGQA------PKAIRSVECYDFKTERWQSVAE-------------MPTRRCRAGLVFLHEK 367 (1026)
Q Consensus 307 ~~~~~~~~~~~~~~~i~v~GG~~------~~~~~~~~~yd~~~~~W~~~~~-------------~p~~r~~~~~~~~~~~ 367 (1026)
.||.-..+.++++..||-|||+- ....-++.++|..+-+|+.+++ .|..|++|+++.++++
T Consensus 11 GPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~ 90 (392)
T KOG4693|consen 11 GPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDK 90 (392)
T ss_pred CcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcce
Confidence 34544455677899999999962 1233578999999999999876 3556999999999999
Q ss_pred EEEEeccCC------CeEEEeCCCCeEEeCC---CCcCCcceeEEEEECCEEEEEeccCC--CCCCCEEEEEECCCCcEE
Q psy9769 368 VYAVGGFNG------SLRVYDPSTNEWSSAP---PMEARRSTLGVAVLNSLIYAVGGFDG--SSGLNSAEVYDPSTEKWN 436 (1026)
Q Consensus 368 iyv~GG~~~------~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~~~W~ 436 (1026)
+|++||++. .++.|||+++.|.... -.|.+|-+|++|++++.+|+|||+.. +...++++.+|..|.+|+
T Consensus 91 ~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr 170 (392)
T KOG4693|consen 91 AYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWR 170 (392)
T ss_pred EEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeee
Confidence 999999875 4788999999998643 57899999999999999999999854 344789999999999999
Q ss_pred Ecc---CCCCCcceeEEEEECCEEEEEeCCC
Q psy9769 437 MIA---PMSTRRSSVGVGVLNGCLYAENLDG 464 (1026)
Q Consensus 437 ~~~---~~p~~r~~~~~~~~~~~lyv~GG~~ 464 (1026)
.+. ..|.-|..|+++++++.+|||||.+
T Consensus 171 ~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~ 201 (392)
T KOG4693|consen 171 EMHTKGDPPRWRDFHTASVIDGMMYIFGGRS 201 (392)
T ss_pred ehhccCCCchhhhhhhhhhccceEEEecccc
Confidence 876 4456688999999999999999953
No 32
>PLN02153 epithiospecifier protein
Probab=99.94 E-value=4.5e-25 Score=247.79 Aligned_cols=123 Identities=23% Similarity=0.428 Sum_probs=108.4
Q ss_pred CCCCcEEEcCC----CCccccceeeEEECCEEEEEeccC-------CCeEEEeCCCCeEEeCCCCc-CCc---ceeEEEE
Q psy9769 341 FKTERWQSVAE----MPTRRCRAGLVFLHEKVYAVGGFN-------GSLRVYDPSTNEWSSAPPME-ARR---STLGVAV 405 (1026)
Q Consensus 341 ~~~~~W~~~~~----~p~~r~~~~~~~~~~~iyv~GG~~-------~~~~~yd~~~~~W~~~~~~p-~~r---~~~~~~~ 405 (1026)
+...+|..+.+ +|.+|.+|++++++++|||+||.. +++++||+.+++|+.+++++ .|| .+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35678999876 799999999999999999999973 36899999999999988764 344 3688899
Q ss_pred ECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCC-----CCCcceeEEEEECCEEEEEeCC
Q psy9769 406 LNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPM-----STRRSSVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 406 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~ 463 (1026)
++++||++||.++...++++++||+.+++|+.+++| |.+|..|++++++++|||+||.
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~ 146 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGV 146 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCc
Confidence 999999999987776788999999999999999887 8899999999999999999994
No 33
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=99.93 E-value=2.1e-25 Score=252.31 Aligned_cols=264 Identities=17% Similarity=0.162 Sum_probs=210.8
Q ss_pred cccccCCCcEEEEEEEEeeecccCceeeEEeecccccccccc-cc-ccccCcccccccccccccceeeeecccceeeeee
Q psy9769 517 LSNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYI-NT-TLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIK 594 (1026)
Q Consensus 517 ~~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~-~~-~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~ 594 (1026)
..+.|++|+.|.|.|++.++.+ +++.||.++......|. +. ....|++++|+|.++.++|++|++| +.||+|
T Consensus 76 ~~~~~~vGd~Ie~~V~~~~~~~---g~liLS~k~~~~~~~w~~ie~~~e~g~~V~G~V~~v~k~G~~VdlG---i~gflP 149 (486)
T PRK07899 76 PNEVVEVGDEVEALVLQKEDKE---GRLILSKKRAQYERAWGTIEKIKEKDGVVTGTVIEVVKGGLILDIG---LRGFLP 149 (486)
T ss_pred hhhcCCCCCEEEEEEEEEECCC---CeEEEEehhhcccchHHHHHHHhcCCCEEEEEEEEEECCeEEEEEC---CEEEEE
Confidence 4456899999999999875443 48999998766544332 22 3458999999999999999999996 579999
Q ss_pred ccc----------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcce
Q psy9769 595 YDS----------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWK 664 (1026)
Q Consensus 595 ~~~----------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~ 664 (1026)
.++ -.+||.++|+|++++.+ ++.+.||.+.. ........+...+..+++|++++|+|+++.++|++
T Consensus 150 ~Sel~~~~~~~~~~~vGq~V~vkVleid~~--~~~ivLSrr~~--l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~F 225 (486)
T PRK07899 150 ASLVEMRRVRDLQPYIGQEIEAKIIELDKN--RNNVVLSRRAW--LEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAF 225 (486)
T ss_pred hhHhcccccCChhhcCCCEEEEEEEEEECC--CCEEEEEhHHH--HHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEE
Confidence 753 35899999999999988 67788887632 22122233456678899999999999999999999
Q ss_pred eeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeeceeee
Q psy9769 665 AKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTI 740 (1026)
Q Consensus 665 v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v 740 (1026)
|++ +++.||+|.++++|.+ .+.|++|+++ +++|+.+|+.++++.||+|+...
T Consensus 226 Vdl--ggv~Glv~~Sels~~~v~~~~~~~kvGd~V--~vkVl~iD~e~~rI~LSlK~~~~-------------------- 281 (486)
T PRK07899 226 VDL--GGVDGLVHVSELSWKHIDHPSEVVEVGQEV--TVEVLDVDMDRERVSLSLKATQE-------------------- 281 (486)
T ss_pred EEE--CCEEEEEEHHHCCCcccCCHHHhcCCCCEE--EEEEEEEECCCCEEEEEEeeccc--------------------
Confidence 999 6899999999999876 4578999999 99999999999999999998411
Q ss_pred eeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEcccccccccCceEEEEC
Q psy9769 741 FEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLD 820 (1026)
Q Consensus 741 ~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~ 820 (1026)
++|.....
T Consensus 282 ----------------------------------------------------------dPw~~~~~-------------- 289 (486)
T PRK07899 282 ----------------------------------------------------------DPWQQFAR-------------- 289 (486)
T ss_pred ----------------------------------------------------------cchhhhHH--------------
Confidence 12210000
Q ss_pred CEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecceeeEeeCceeeeeEeEEEEeeeEEEeccceee
Q psy9769 821 NILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLK 900 (1026)
Q Consensus 821 ~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~ 900 (1026)
. ...|+.+.|+|+++.+||+||+|.+ |++
T Consensus 290 --------------------------------------~------------~~vG~vv~G~V~~I~~fGvFVeL~~-gie 318 (486)
T PRK07899 290 --------------------------------------T------------HAIGQIVPGKVTKLVPFGAFVRVEE-GIE 318 (486)
T ss_pred --------------------------------------h------------cCCCCEEEEEEEEEeccEEEEEeCC-CcE
Confidence 0 2348899999999999999999998 899
Q ss_pred eeccc-----ceeeCCccccccCcEEee--------cCeEEEehhhhhcc
Q psy9769 901 ATCEN-----EYVEGNKADIKVGDEVQA--------KNSIEVAFKSLYRI 937 (1026)
Q Consensus 901 ~~~~~-----~~~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~ 937 (1026)
|++|. +....++..|++||+|+. ++||.||+|++.+.
T Consensus 319 GLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~~ 368 (486)
T PRK07899 319 GLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQANEG 368 (486)
T ss_pred EEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEcccC
Confidence 99998 234456678999999883 88999999996553
No 34
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.93 E-value=2e-25 Score=241.74 Aligned_cols=226 Identities=17% Similarity=0.246 Sum_probs=183.5
Q ss_pred cccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhh
Q psy9769 644 NLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEAL 719 (1026)
Q Consensus 644 ~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l 719 (1026)
.+.+|++|+|+|.++.++|++|++ .+...||+|.+++++.+ ++.|++|+++ +|+|+.+|++.+++.||+|+..
T Consensus 28 ~~~~G~iv~G~V~~i~~~g~~Vdi-g~k~~g~lp~sEis~~~~~~~~~~~~~G~~v--~~~Vi~~~~~~~~i~lS~k~~~ 104 (318)
T PRK07400 28 HFKPGDIVNGTVFSLEPRGALIDI-GAKTAAFMPIQEMSINRVEGPEEVLQPNETR--EFFILSDENEDGQLTLSIRRIE 104 (318)
T ss_pred hcCCCCEEEEEEEEEECCEEEEEE-CCCeEEEEEHHHhccccccCHHHccCCCCEE--EEEEEEEeCCCCeEEEehhhhh
Confidence 479999999999999999999999 35689999999999875 5668999999 9999999999999999999831
Q ss_pred hhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCC
Q psy9769 720 LERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERN 799 (1026)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~ 799 (1026)
. .+
T Consensus 105 ~-----------------------------------------------------------------------------~~ 107 (318)
T PRK07400 105 Y-----------------------------------------------------------------------------MR 107 (318)
T ss_pred h-----------------------------------------------------------------------------hh
Confidence 0 01
Q ss_pred eeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecceeeEeeCceee
Q psy9769 800 TWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVS 879 (1026)
Q Consensus 800 ~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~ 879 (1026)
.|..+.+ ....|..++
T Consensus 108 ~w~~l~~----------------------------------------------------------------~~~~~~~V~ 123 (318)
T PRK07400 108 AWERVRQ----------------------------------------------------------------LQKEDATVR 123 (318)
T ss_pred HHHHHHH----------------------------------------------------------------hccCCCEEE
Confidence 1211100 023478999
Q ss_pred eeEeEEEEeeeEEEeccceeeeecccceee-CCccccccCcEEee--------cCeEEEehhh-hhcccCCCCccccCCC
Q psy9769 880 CVVKGISVRGVIAQVGYYKLKATCENEYVE-GNKADIKVGDEVQA--------KNSIEVAFKS-LYRIAQPLTSVKHTKP 949 (1026)
Q Consensus 880 g~v~~i~~~g~~v~l~~~~~~~~~~~~~~~-~~~~~~kvG~~v~~--------~~~i~ls~K~-l~~~~~~~~~~~~~~~ 949 (1026)
|+|+.+.++|+||+++ |++||+|..... +..+...+|+.++. +++|.||+|+ +.+. .+.+.++
T Consensus 124 g~V~~~~~~G~~V~l~--Gv~gfip~s~ls~~~~~~~~vG~~i~~kVl~id~~~~~i~lS~K~~~~~~-----~~~~~k~ 196 (318)
T PRK07400 124 SEVFATNRGGALVRIE--GLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER-----KMNRLEV 196 (318)
T ss_pred EEEEEEECCeEEEEEC--CEEEEEEHHHcCccCCccccCCCEEEEEEEEEEcccCEEEEEhhHhhhhh-----hhccCCC
Confidence 9999999999999995 899999993321 22223459999873 7899999998 5322 3455688
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeechhhhhh
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTEADEKL 1021 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~~~~~ 1021 (1026)
|+++.|+|++|++||+||++ +|++||+|.++++|.++.+|.+.|++||.|+|+|+++|+++.++..+.+++
T Consensus 197 G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l 267 (318)
T PRK07400 197 GEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQL 267 (318)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEecc
Confidence 99999999999999999999 589999999999999999999999999999999999998666665444443
No 35
>KOG4693|consensus
Probab=99.92 E-value=6.4e-24 Score=207.97 Aligned_cols=135 Identities=19% Similarity=0.315 Sum_probs=111.2
Q ss_pred cEEEcCCCCccccceeeEEECCEEEEEeccCC----------CeEEEeCCCCeEEeCCC-------------CcCCccee
Q psy9769 345 RWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG----------SLRVYDPSTNEWSSAPP-------------MEARRSTL 401 (1026)
Q Consensus 345 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----------~~~~yd~~~~~W~~~~~-------------~p~~r~~~ 401 (1026)
+|+.--.-...|-+|+++.++.+||-|||+.. +++++|..+-.|+.+++ .|..|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 57754444566899999999999999999742 68899999999998875 36789999
Q ss_pred EEEEECCEEEEEeccCC-CCCCCEEEEEECCCCcEEEcc---CCCCCcceeEEEEECCEEEEEeCCC--------ceeeE
Q psy9769 402 GVAVLNSLIYAVGGFDG-SSGLNSAEVYDPSTEKWNMIA---PMSTRRSSVGVGVLNGCLYAENLDG--------RILGC 469 (1026)
Q Consensus 402 ~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~--------~~~~~ 469 (1026)
+.+.+++++|+.||.++ .+..+.+++|||++++|.+.. -+|.+|.+|++|++++.+|||||+. ....+
T Consensus 83 tvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred eEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 99999999999999977 445789999999999998654 7899999999999999999999953 23334
Q ss_pred EcCcccEEEe
Q psy9769 470 VKEITDWGLI 479 (1026)
Q Consensus 470 ~~~~~~W~~~ 479 (1026)
|..+.+|+.+
T Consensus 163 d~~TmtWr~~ 172 (392)
T KOG4693|consen 163 DFATMTWREM 172 (392)
T ss_pred eccceeeeeh
Confidence 5555666665
No 36
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.91 E-value=1.1e-23 Score=237.69 Aligned_cols=193 Identities=20% Similarity=0.298 Sum_probs=149.8
Q ss_pred cccceeeeec-cCCCCCCCCccCCcEEEEEcCCCCC-------CCcEEEEEECCCCcEEEcC-CCCccccceeeE-EECC
Q psy9769 297 GEVNKLTLVR-TPRTKPRQPLRVPKVMLVVGGQAPK-------AIRSVECYDFKTERWQSVA-EMPTRRCRAGLV-FLHE 366 (1026)
Q Consensus 297 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~GG~~~~-------~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~ 366 (1026)
..|..++.++ .+|..+ ..+..++.||++||.+.. .++++++||+.+++|+.++ ++|.+|.+++++ ++++
T Consensus 41 ~~W~~l~~~p~~~R~~~-~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g 119 (346)
T TIGR03547 41 KGWQKIADFPGGPRNQA-VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNG 119 (346)
T ss_pred CCceECCCCCCCCcccc-eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCC
Confidence 3455544444 244333 234568999999997521 3678999999999999997 467777777776 7899
Q ss_pred EEEEEeccC---------------------------------------CCeEEEeCCCCeEEeCCCCcC-CcceeEEEEE
Q psy9769 367 KVYAVGGFN---------------------------------------GSLRVYDPSTNEWSSAPPMEA-RRSTLGVAVL 406 (1026)
Q Consensus 367 ~iyv~GG~~---------------------------------------~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~ 406 (1026)
+||++||++ +++++|||.+++|+.+++||. +|+.++++++
T Consensus 120 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~ 199 (346)
T TIGR03547 120 QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHK 199 (346)
T ss_pred EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEE
Confidence 999999974 468899999999999999996 7889999999
Q ss_pred CCEEEEEeccCCCCC-CCEEEEEE--CCCCcEEEccCCCCCc-------ceeEEEEECCEEEEEeCCC------------
Q psy9769 407 NSLIYAVGGFDGSSG-LNSAEVYD--PSTEKWNMIAPMSTRR-------SSVGVGVLNGCLYAENLDG------------ 464 (1026)
Q Consensus 407 ~~~iyv~GG~~~~~~-~~~v~~yd--~~~~~W~~~~~~p~~r-------~~~~~~~~~~~lyv~GG~~------------ 464 (1026)
+++||++||...... ...++.|| +.+++|+.+++||.+| ..|++++++++|||+||..
T Consensus 200 ~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~ 279 (346)
T TIGR03547 200 GNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGK 279 (346)
T ss_pred CCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCC
Confidence 999999999854332 34566665 5778999999998775 3555788999999999953
Q ss_pred -----------ceeeEEcCcccEEEeecCCCcccceE
Q psy9769 465 -----------RILGCVKEITDWGLIIELPNFLSASV 490 (1026)
Q Consensus 465 -----------~~~~~~~~~~~W~~~~~lP~~~~g~~ 490 (1026)
....|+.++++|+.+.+||.++.+.+
T Consensus 280 ~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~ 316 (346)
T TIGR03547 280 LYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGV 316 (346)
T ss_pred ccccCCCCceeEeeEEEecCCcccccCCCCCCceeeE
Confidence 23457778899999999998765443
No 37
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.91 E-value=1.8e-23 Score=233.16 Aligned_cols=184 Identities=16% Similarity=0.217 Sum_probs=148.5
Q ss_pred cceeeeeccCCCCCCCCccCCcEEEEEcCCCC-CCCcEEEEEECCCCcE----EEcCCCCccccceeeEEECCEEEEEec
Q psy9769 299 VNKLTLVRTPRTKPRQPLRVPKVMLVVGGQAP-KAIRSVECYDFKTERW----QSVAEMPTRRCRAGLVFLHEKVYAVGG 373 (1026)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~i~v~GG~~~-~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~iyv~GG 373 (1026)
|..+..++.||..+. .+..++.||++||.+. ..++++++||+.+++| ..+++||.+|.+|++++++++||++||
T Consensus 53 W~~~~~lp~~r~~~~-~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG 131 (323)
T TIGR03548 53 WVKDGQLPYEAAYGA-SVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGG 131 (323)
T ss_pred EEEcccCCccccceE-EEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeC
Confidence 444444455554333 3456899999999863 4578999999999988 788999999999999999999999999
Q ss_pred cC-----CCeEEEeCCCCeEEeCCCCc-CCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCC---CC
Q psy9769 374 FN-----GSLRVYDPSTNEWSSAPPME-ARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS---TR 444 (1026)
Q Consensus 374 ~~-----~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~ 444 (1026)
.. +++++||+.+++|+.+++|| .+|..|++++++++||++||.++.. ..++++|||.+++|+.+++|+ .|
T Consensus 132 ~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p 210 (323)
T TIGR03548 132 NRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEP 210 (323)
T ss_pred cCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCc
Confidence 63 37899999999999999988 4899999999999999999986543 457899999999999998763 33
Q ss_pred c--ceeEE-EEECCEEEEEeCCC--------------------------------------ceeeEEcCcccEEEeecCC
Q psy9769 445 R--SSVGV-GVLNGCLYAENLDG--------------------------------------RILGCVKEITDWGLIIELP 483 (1026)
Q Consensus 445 r--~~~~~-~~~~~~lyv~GG~~--------------------------------------~~~~~~~~~~~W~~~~~lP 483 (1026)
+ ..+++ ++.+++|||+||.. .+..||+.+++|+.++++|
T Consensus 211 ~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p 290 (323)
T TIGR03548 211 ISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSP 290 (323)
T ss_pred eeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccc
Confidence 3 33443 44479999999964 3567888999999999988
Q ss_pred C
Q psy9769 484 N 484 (1026)
Q Consensus 484 ~ 484 (1026)
.
T Consensus 291 ~ 291 (323)
T TIGR03548 291 F 291 (323)
T ss_pred c
Confidence 4
No 38
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=99.89 E-value=7.8e-23 Score=232.79 Aligned_cols=266 Identities=17% Similarity=0.213 Sum_probs=210.4
Q ss_pred ccccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccc--cccccCcccccccccccccceeeeecccceeeeeec
Q psy9769 518 SNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYIN--TTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKY 595 (1026)
Q Consensus 518 ~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~--~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~ 595 (1026)
...|++|+.|.|.|++++.+.+ ++.||.++......+.. ..+++|++++|+|.++.++|++|+++ +..||+|.
T Consensus 60 ~~~~~vGd~v~~~V~~v~~~~~---~i~lS~k~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~~--G~~gflp~ 134 (390)
T PRK06676 60 NDVVKVGDELEVYVLKVEDGEG---NLLLSKRRLEAEKAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDVE--GVRGFIPA 134 (390)
T ss_pred ccccCCCCEEEEEEEEEECCCC---CEEEEHHHhhhhhhHHHHHHhccCCCEEEEEEEEEECCeEEEEEC--CEEEEEEH
Confidence 4568999999999999975554 79999987543333322 36689999999999999999999994 45999998
Q ss_pred ccc----------ccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCccee
Q psy9769 596 DSV----------ILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKA 665 (1026)
Q Consensus 596 ~~~----------~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v 665 (1026)
+++ .+||.++|+|++++.. .+.+.+|.+...- ......+...+..+.+|++++|+|.++.++|++|
T Consensus 135 ~el~~~~~~~~~~~vG~~v~~~Vl~~d~~--~~~i~lS~k~~~~--~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV 210 (390)
T PRK06676 135 SLISTRFVEDFSDFKGKTLEVKIIELDPE--KNRVILSRRAVVE--EERAAKKEELLSSLKEGDVVEGTVARLTDFGAFV 210 (390)
T ss_pred HHcCCccCCChHHcCCCEEEEEEEEEECC--CCEEEEEeHHHhh--hhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEE
Confidence 652 2799999999999987 7788898865322 1112234456677899999999999999999999
Q ss_pred eccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeeceeeee
Q psy9769 666 KLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKKTIF 741 (1026)
Q Consensus 666 ~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~ 741 (1026)
.+ +++.||+|.+++++.+ .+.|++|+++ +|+|+.+|++++++.||+|+...
T Consensus 211 ~l--~~v~g~v~~sels~~~~~~~~~~~~vGd~i--~~~Vl~vd~~~~~i~lS~k~~~~--------------------- 265 (390)
T PRK06676 211 DI--GGVDGLVHISELSHERVEKPSEVVSVGQEV--EVKVLSIDWETERISLSLKDTLP--------------------- 265 (390)
T ss_pred Ee--CCeEEEEEHHHcCccccCCHHHhcCCCCEE--EEEEEEEeCCCCEEEEEEeeccc---------------------
Confidence 99 6899999999999865 4668999999 99999999999999999998411
Q ss_pred eeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEcccccccccCceEEEECC
Q psy9769 742 EDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDN 821 (1026)
Q Consensus 742 ~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~ 821 (1026)
++|...
T Consensus 266 ---------------------------------------------------------~~~~~~----------------- 271 (390)
T PRK06676 266 ---------------------------------------------------------GPWEGV----------------- 271 (390)
T ss_pred ---------------------------------------------------------Cccccc-----------------
Confidence 111100
Q ss_pred EEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecceeeEeeCceeeeeEeEEEEeeeEEEeccceeee
Q psy9769 822 ILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYYKLKA 901 (1026)
Q Consensus 822 ~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~ 901 (1026)
...+..|+.+.|+|+++.+||+||++.+ |+.|
T Consensus 272 -----------------------------------------------~~~~~~G~~v~g~V~~i~~~G~fV~l~~-gi~G 303 (390)
T PRK06676 272 -----------------------------------------------EEKLPEGDVIEGTVKRLTDFGAFVEVLP-GVEG 303 (390)
T ss_pred -----------------------------------------------hhhhcCCcEEEEEEEEEeCceEEEEECC-CCeE
Confidence 0013458999999999999999999998 8999
Q ss_pred ecccce-----eeCCccccccCcEEee--------cCeEEEehhhhhcccC
Q psy9769 902 TCENEY-----VEGNKADIKVGDEVQA--------KNSIEVAFKSLYRIAQ 939 (1026)
Q Consensus 902 ~~~~~~-----~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~~~ 939 (1026)
++|.+. ..++...|++||.+++ ++++.|++|++..+||
T Consensus 304 lv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~~~~ 354 (390)
T PRK06676 304 LVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEEAPA 354 (390)
T ss_pred EEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEecccChh
Confidence 999822 3355567999999983 7999999999755443
No 39
>KOG2075|consensus
Probab=99.89 E-value=3.4e-23 Score=220.13 Aligned_cols=227 Identities=24% Similarity=0.388 Sum_probs=206.1
Q ss_pred hHHHHHHHHHHHhcCCCccEEEEECC-----EEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhh
Q psy9769 49 TSKAFETMNIMRKQNLLCDVKLIADG-----VEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDY 122 (1026)
Q Consensus 49 ~~~l~~~l~~l~~~~~~~Dv~i~v~~-----~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~ 122 (1026)
...+......++++...+|+.|+|++ ++|||||.+|+..|+.|.+||+ ++.+....+|.++++++.+|..+|+|
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~f 177 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRF 177 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhHhHHHHHH
Confidence 45677778889999999999999973 7899999999999999999999 88888888999999999999999999
Q ss_pred eecceeeechhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHh-hhhcCchhHHHHHHhhhhhhhhheeccc
Q psy9769 123 VYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAF-ADLHSCLDLLSTAENYIELHFAEIVECE 201 (1026)
Q Consensus 123 ~Ytg~~~i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~-a~~~~~~~L~~~~~~~i~~~~~~l~~~~ 201 (1026)
||+.++.+..++++.+|.+|++|.++.|.+.|.+||+.++...|.+..+.. |..+.-++|.+.|++-|..++...+..+
T Consensus 178 lYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~E 257 (521)
T KOG2075|consen 178 LYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPE 257 (521)
T ss_pred HhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCcc
Confidence 999999999999999999999999999999999999999888887755555 9999999999999999999999999999
Q ss_pred ccccCC--HhhHhceeccccccccchhhHHHHHHHHHhc---------ChhHHHHHHHHHHhhcccCCCCHHHHHhhccc
Q psy9769 202 EFLSLS--HEQVLGLISSDKLMVSNEEKVFECVIAWVNY---------DLESRQKHVAELMEYVRLPLLSEDYLIQRVEE 270 (1026)
Q Consensus 202 ~f~~L~--~~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~---------~~~~r~~~~~~ll~~vr~~~l~~~~l~~~~~~ 270 (1026)
.|.++. .+.++++|+++.|.+ +|..+|+|+++|+.. +...+++.+...+..+|||.|..+.+...+++
T Consensus 258 Gf~did~~~dt~~evl~r~~l~~-~e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~lirfp~m~~Eefa~~~e~ 336 (521)
T KOG2075|consen 258 GFCDIDSTRDTYEEVLRRDTLEA-REFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALSLIRFPFMNIEEFARGVEQ 336 (521)
T ss_pred ceeehhhHHHHHHHHHhhcccch-hHHHHHHHHHhhccCcchhhcCCCCccchhhhhhheeeeecccccchhhhccCccc
Confidence 999988 999999999999999 599999999999883 33455678889999999999999988877777
Q ss_pred cceecc
Q psy9769 271 ETVFKN 276 (1026)
Q Consensus 271 ~~l~~~ 276 (1026)
.++...
T Consensus 337 sgIl~d 342 (521)
T KOG2075|consen 337 SGILTD 342 (521)
T ss_pred cCCccc
Confidence 666653
No 40
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.89 E-value=5.1e-23 Score=223.00 Aligned_cols=221 Identities=20% Similarity=0.230 Sum_probs=180.7
Q ss_pred ccccCcccccccccccccceeeeecccceeeeeeccc------------cccCceEEEEEeeeeeccceeEEEEechHHH
Q psy9769 561 TLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS------------VILGQIVTCMISKIKVAASMSILEVTLDEEL 628 (1026)
Q Consensus 561 ~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~------------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~ 628 (1026)
.+++|+++.|+|.++.++|++|+||.+ ..||+|.++ +++|+.++|.|++.++. .+.+.||+++..
T Consensus 28 ~~~~G~iv~G~V~~i~~~g~~Vdig~k-~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~--~~~i~lS~k~~~ 104 (318)
T PRK07400 28 HFKPGDIVNGTVFSLEPRGALIDIGAK-TAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENE--DGQLTLSIRRIE 104 (318)
T ss_pred hcCCCCEEEEEEEEEECCEEEEEECCC-eEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCC--CCeEEEehhhhh
Confidence 589999999999999999999999754 599999754 68899999999999887 667889988643
Q ss_pred HhhhccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchhhhhhcccccccccceeeeecccc
Q psy9769 629 IRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAYNAKYLTNKRVDLDCSVLYVCPRH 708 (1026)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~~~~~~~G~~~~~~~~Il~vd~~~ 708 (1026)
... .+....+...+|.+|+|+|.++.++|++|++ +|++||+|.+|+++.......+|+++ +++|+.+|+++
T Consensus 105 ~~~-----~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l--~Gv~gfip~s~ls~~~~~~~~vG~~i--~~kVl~id~~~ 175 (318)
T PRK07400 105 YMR-----AWERVRQLQKEDATVRSEVFATNRGGALVRI--EGLRGFIPGSHISTRKPKEELVGEEL--PLKFLEVDEER 175 (318)
T ss_pred hhh-----HHHHHHHhccCCCEEEEEEEEEECCeEEEEE--CCEEEEEEHHHcCccCCccccCCCEE--EEEEEEEEccc
Confidence 221 1222222335799999999999999999999 79999999999998765556699999 99999999999
Q ss_pred ceEEeechhhhhhcccCCCCcceeeeeceeeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCcccc
Q psy9769 709 FHVYLSCNEALLERQTGRPEFSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCL 788 (1026)
Q Consensus 709 ~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~ 788 (1026)
+++.||+|+.+.+.
T Consensus 176 ~~i~lS~K~~~~~~------------------------------------------------------------------ 189 (318)
T PRK07400 176 NRLVLSHRRALVER------------------------------------------------------------------ 189 (318)
T ss_pred CEEEEEhhHhhhhh------------------------------------------------------------------
Confidence 99999999742200
Q ss_pred ceEEEecCCCCeeEEcccccccccCceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecc
Q psy9769 789 SSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVAS 868 (1026)
Q Consensus 789 ~~~~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~ 868 (1026)
.
T Consensus 190 -------------------~------------------------------------------------------------ 190 (318)
T PRK07400 190 -------------------K------------------------------------------------------------ 190 (318)
T ss_pred -------------------h------------------------------------------------------------
Confidence 0
Q ss_pred eeeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc-----ceeeCCccccccCcEEee--------cCeEEEehhhhh
Q psy9769 869 TAEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN-----EYVEGNKADIKVGDEVQA--------KNSIEVAFKSLY 935 (1026)
Q Consensus 869 ~~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~-----~~~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~ 935 (1026)
...+..|+++.|+|++|++||+||+++ |++|++|. ++..++...|++||.++. +++|.||+|++.
T Consensus 191 ~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~Gllhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~ 268 (318)
T PRK07400 191 MNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSGLLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLE 268 (318)
T ss_pred hccCCCCCEEEEEEEEEECCeEEEEEC--CEEEEEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeccc
Confidence 001335899999999999999999995 79999998 335567788999999984 689999999986
Q ss_pred cccCC
Q psy9769 936 RIAQP 940 (1026)
Q Consensus 936 ~~~~~ 940 (1026)
.+||.
T Consensus 269 ~~P~~ 273 (318)
T PRK07400 269 PEPGD 273 (318)
T ss_pred cChhh
Confidence 66665
No 41
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=99.87 E-value=1.4e-21 Score=234.13 Aligned_cols=267 Identities=16% Similarity=0.192 Sum_probs=213.5
Q ss_pred cccccccCCCcEEEEEEEEeeecccCceeeEEeecccccccccc--ccccccCcccccccccccccceeeeecccceeee
Q psy9769 515 PELSNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYI--NTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAF 592 (1026)
Q Consensus 515 ~~~~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~--~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf 592 (1026)
....+.|++|+.|.+.|+++++.+ +++.||.++......+. ...+++|+++.|+|.++.++|++|++|. .+||
T Consensus 341 ~~~~~~~~vGd~V~v~V~~vd~~~---g~i~LS~k~~~~~~~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lgg--i~gf 415 (647)
T PRK00087 341 SSLKESVKVGDEIEVKVLKLEDED---GYVVLSKKEADREKAWKELEEAFENGEPVKGKVKEVVKGGLLVDYGG--VRAF 415 (647)
T ss_pred CChhhccCCCCEEEEEEEEEECCC---CcEEEEeehhcchhHHHHHHHHhhCCCEEEEEEEEEECCeEEEEECC--EEEE
Confidence 344567999999999999997654 38999998775544332 1357899999999999999999999973 8999
Q ss_pred eeccc----------cccCceEEEEEeeeeeccceeE-EEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCC
Q psy9769 593 IKYDS----------VILGQIVTCMISKIKVAASMSI-LEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPH 661 (1026)
Q Consensus 593 ~~~~~----------~~~G~~v~~~v~~~~~~~~~~~-i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~ 661 (1026)
+|.++ -.+|+.++|+|++++.. ++. +.+|.+.. + ......++...|+++++|+.+.|+|.++.++
T Consensus 416 iP~sel~~~~~~d~~~~vG~~v~v~Vl~vd~e--~~~~l~lS~k~~-~-~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~ 491 (647)
T PRK00087 416 LPASHVELGYVEDLSEYKGQELEVKIIEFNRK--RRKKVVLSRKAI-L-EEEKEKKKEETWNSLEEGDVVEGEVKRLTDF 491 (647)
T ss_pred EEHHHhCccccCCHHHhCCCEEEEEEEEEEcC--CCcEEEEEeHHH-h-hhhhhhHHHHHHHhCCCCCEEEEEEEEEeCC
Confidence 99754 13899999999999988 444 78887542 2 2222344567788899999999999999999
Q ss_pred cceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeece
Q psy9769 662 GWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVK 737 (1026)
Q Consensus 662 G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~ 737 (1026)
|++|.+ +++.||+|.+++++.+ .+.|++|+.+ +++|+.+|+.++++.||+|+.+.
T Consensus 492 G~fV~l--~gv~Gll~~sels~~~~~~~~~~~~vGd~V--~vkV~~id~~~~~I~lS~K~~~~----------------- 550 (647)
T PRK00087 492 GAFVDI--GGVDGLLHVSEISWGRVEKPSDVLKVGDEI--KVYILDIDKENKKLSLSLKKLLP----------------- 550 (647)
T ss_pred cEEEEE--CCEEEEEEHHHcCccccCCHHHhcCCCCEE--EEEEEEEECCCCEEEEEeecccc-----------------
Confidence 999999 7899999999999765 5679999999 99999999999999999998421
Q ss_pred eeeeeeccccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEcccccccccCceEE
Q psy9769 738 KTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVG 817 (1026)
Q Consensus 738 g~v~~~~~v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~~~~~~ 817 (1026)
+.|...
T Consensus 551 -------------------------------------------------------------~p~~~~------------- 556 (647)
T PRK00087 551 -------------------------------------------------------------DPWENV------------- 556 (647)
T ss_pred -------------------------------------------------------------Chhhhh-------------
Confidence 111100
Q ss_pred EECCEEEEEccCCCCcccceeEEeeCCCCCeeecCCcccccccceEEeecceeeEeeCceeeeeEeEEEEeeeEEEeccc
Q psy9769 818 VLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGVIAQVGYY 897 (1026)
Q Consensus 818 ~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~~v~l~~~ 897 (1026)
...+..|+.+.|+|+++.+||+||++.+
T Consensus 557 ---------------------------------------------------~~~~~~G~~v~g~V~~i~~~G~fV~l~~- 584 (647)
T PRK00087 557 ---------------------------------------------------EEKYPVGSIVLGKVVRIAPFGAFVELEP- 584 (647)
T ss_pred ---------------------------------------------------hhhccCCeEEEEEEEEEECCeEEEEECC-
Confidence 0002358899999999999999999998
Q ss_pred eeeeeccc-----ceeeCCccccccCcEEee--------cCeEEEehhhhhcc
Q psy9769 898 KLKATCEN-----EYVEGNKADIKVGDEVQA--------KNSIEVAFKSLYRI 937 (1026)
Q Consensus 898 ~~~~~~~~-----~~~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~ 937 (1026)
+++|++|. +...++...|++||+++. +++|.|++|++.++
T Consensus 585 ~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~~ 637 (647)
T PRK00087 585 GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEEE 637 (647)
T ss_pred CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeecccC
Confidence 89999998 234566678999999983 79999999997443
No 42
>KOG1230|consensus
Probab=99.85 E-value=3.3e-20 Score=193.11 Aligned_cols=159 Identities=22% Similarity=0.362 Sum_probs=131.4
Q ss_pred ccCCCCCCCCcc-CCcEEEEEcCC--CC---CCCcEEEEEECCCCcEEEc--CCCCccccceeeEEEC-CEEEEEeccC-
Q psy9769 306 RTPRTKPRQPLR-VPKVMLVVGGQ--AP---KAIRSVECYDFKTERWQSV--AEMPTRRCRAGLVFLH-EKVYAVGGFN- 375 (1026)
Q Consensus 306 ~~~~~~~~~~~~-~~~~i~v~GG~--~~---~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~-~~iyv~GG~~- 375 (1026)
|+||+.+...+. ..+.+++|||. ++ ...++++.||..+++|+.+ ++.|.||++|+++++. |.+|+|||.-
T Consensus 64 PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfa 143 (521)
T KOG1230|consen 64 PSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFA 143 (521)
T ss_pred CCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccC
Confidence 455554433222 24589999994 32 2358999999999999986 6678999999999987 8999999953
Q ss_pred ----------CCeEEEeCCCCeEEeCC--CCcCCcceeEEEEECCEEEEEeccCCC----CCCCEEEEEECCCCcEEEcc
Q psy9769 376 ----------GSLRVYDPSTNEWSSAP--PMEARRSTLGVAVLNSLIYAVGGFDGS----SGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 376 ----------~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~~W~~~~ 439 (1026)
.++|.||..+++|+++. .-|.||++|-++++..+|++|||+... .+.|++|+||+.|=+|+++.
T Consensus 144 SPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 144 SPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLE 223 (521)
T ss_pred CcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeecc
Confidence 27899999999999874 579999999999999999999997433 34899999999999999886
Q ss_pred C---CCCCcceeEEEEE-CCEEEEEeCCC
Q psy9769 440 P---MSTRRSSVGVGVL-NGCLYAENLDG 464 (1026)
Q Consensus 440 ~---~p~~r~~~~~~~~-~~~lyv~GG~~ 464 (1026)
+ .|.||+++++++. +|.|||.||+.
T Consensus 224 psga~PtpRSGcq~~vtpqg~i~vyGGYs 252 (521)
T KOG1230|consen 224 PSGAGPTPRSGCQFSVTPQGGIVVYGGYS 252 (521)
T ss_pred CCCCCCCCCCcceEEecCCCcEEEEcchh
Confidence 3 4899999999999 99999999963
No 43
>KOG0379|consensus
Probab=99.85 E-value=8.8e-20 Score=211.33 Aligned_cols=157 Identities=22% Similarity=0.398 Sum_probs=136.0
Q ss_pred ccCCCCCCCCccCCcEEEEEcCCCC-CCCc--EEEEEECCCCcEEEc---CCCCccccceeeEEECCEEEEEeccCC---
Q psy9769 306 RTPRTKPRQPLRVPKVMLVVGGQAP-KAIR--SVECYDFKTERWQSV---AEMPTRRCRAGLVFLHEKVYAVGGFNG--- 376 (1026)
Q Consensus 306 ~~~~~~~~~~~~~~~~i~v~GG~~~-~~~~--~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~--- 376 (1026)
+.+|..|.+.. .++.+||+||... .... +++.+|..+..|... ...|.+|++|++++++++||+|||.+.
T Consensus 58 p~~R~~hs~~~-~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~ 136 (482)
T KOG0379|consen 58 PIPRAGHSAVL-IGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYR 136 (482)
T ss_pred cchhhccceeE-ECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCC
Confidence 45566666655 4899999999752 2233 599999999999865 346789999999999999999999884
Q ss_pred ---CeEEEeCCCCeEEeCC---CCcCCcceeEEEEECCEEEEEeccCCCC-CCCEEEEEECCCCcEEEcc---CCCCCcc
Q psy9769 377 ---SLRVYDPSTNEWSSAP---PMEARRSTLGVAVLNSLIYAVGGFDGSS-GLNSAEVYDPSTEKWNMIA---PMSTRRS 446 (1026)
Q Consensus 377 ---~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~~r~ 446 (1026)
+++.||+.|++|+.+. .+|.+|.+|++++++++||||||.+... ..+++|+||+.+.+|.++. +.|.||.
T Consensus 137 ~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~ 216 (482)
T KOG0379|consen 137 NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY 216 (482)
T ss_pred ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC
Confidence 8999999999998764 5699999999999999999999998766 7899999999999999875 6789999
Q ss_pred eeEEEEECCEEEEEeCC
Q psy9769 447 SVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 447 ~~~~~~~~~~lyv~GG~ 463 (1026)
+|+++++++++|++||.
T Consensus 217 gH~~~~~~~~~~v~gG~ 233 (482)
T KOG0379|consen 217 GHAMVVVGNKLLVFGGG 233 (482)
T ss_pred CceEEEECCeEEEEecc
Confidence 99999999999999984
No 44
>KOG1070|consensus
Probab=99.84 E-value=1.8e-20 Score=220.16 Aligned_cols=430 Identities=14% Similarity=0.137 Sum_probs=275.2
Q ss_pred ccccCCCcEEEEEEEEeeecccCceeeEEeeccccccc-cccccccccCcccccccccccccceeeeecccceeeeeecc
Q psy9769 518 SNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNE-MYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYD 596 (1026)
Q Consensus 518 ~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~-~~~~~~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~ 596 (1026)
...|++|..+.|.|+.+...++ .+.++.+++.++. .++.+++.-|..|.|.|.++...|+.|-+-.+++.|++|..
T Consensus 465 v~~~e~~te~~~rv~~v~~v~~---v~~v~~~~svl~lk~~~~nDI~iG~~V~~~I~~vt~~Gv~v~v~~~ni~g~lp~~ 541 (1710)
T KOG1070|consen 465 VPIYEVGTEVKSRVWQVFYVGK---VVIVSVRESVLGLKFLRVNDIEIGQLVPGVIRKVTPQGVEVLVTFGNIKGVLPKE 541 (1710)
T ss_pred CCceecCCcccCccceecccCc---EEEEEEehHhhcccccccccccccceeeeEEEEecCCcEEEEEecCceeeecChH
Confidence 3456677777777776654443 6677777776665 67778899999999999999999999998777899999963
Q ss_pred c------------cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCcccccccccCCceEEeeeecccCCcce
Q psy9769 597 S------------VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANICQQLPHGWK 664 (1026)
Q Consensus 597 ~------------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~ 664 (1026)
. +.+|..++++|+.++.. ++.+.++.+.+.++. ..+...+++.++||+++.|.+..+.++|++
T Consensus 542 hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~--~~~v~l~~K~slv~~---~~plp~d~~~~~pg~~~~G~l~~~~~~g~~ 616 (1710)
T KOG1070|consen 542 HLSDHPLQPPLRDFKVGSGVKLRVLSVNRD--RNRVALTLKKSLVNT---QLPLPSDFEQAIPGKITKGTLCAIKENGAF 616 (1710)
T ss_pred hhhhcccccccceeeeccccEEEEEEEEcc--CCeeEEEechhhhcc---cCCCccchhhcCCCceEEEEEeeeccCCeE
Confidence 2 88899999999999998 788999999999888 445567788889999999999999999999
Q ss_pred eeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhhhcccCCCCcceeeeecee--
Q psy9769 665 AKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALLERQTGRPEFSVCISIVKK-- 738 (1026)
Q Consensus 665 v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~~~~~~~~~~~~~~~~~~g-- 738 (1026)
|+| ++|++||.|.+.++..+ .+.|.+||++ .+.|..+|++++++.++++....... ...-..+.+..|
T Consensus 617 V~F-~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv--~~~i~nvd~ek~rm~l~~r~s~~~~a---~~~~~~e~~~~g~v 690 (1710)
T KOG1070|consen 617 VTF-TGGLSGFAPVSEMSDDFVLSDSEHFPVGQTV--RAKIVNVDDEKRRMPLGLRASSCARA---CVKRSVENFVKGGV 690 (1710)
T ss_pred EEe-cCccccccchhhhhhhhhcChhhhcccccEE--EEEEEecCchhceeehhhhhhhhHHH---HHHHHHHHhhcccc
Confidence 999 69999999999999987 7889999999 99999999999999999998653110 000111122222
Q ss_pred ---eeeeecc---ccccccccCccCCCCccccccccCCCCeEEEeccccCCCccccceEEEecCCCCeeEEccccccccc
Q psy9769 739 ---TIFEDSS---VSGTEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRS 812 (1026)
Q Consensus 739 ---~v~~~~~---v~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~r~ 812 (1026)
...+.+. +..+.+.|.. -+.++|-..+. .-+... ..++..|.
T Consensus 691 ~s~~~~~~tkd~viVei~~~~~~-----------------~v~~~~~L~dg-----~v~~~~----------~~~~kl~~ 738 (1710)
T KOG1070|consen 691 KSLKSIDKTKDSVIVEIVDQGIT-----------------GVGVFGELVDG-----SVVVNK----------VLENKLRK 738 (1710)
T ss_pred ccceeehhccccEEEEccCcceE-----------------EEEEEEEEccC-----ceEEcc----------chhhhhhh
Confidence 1111110 1111111100 00000000000 000000 01111111
Q ss_pred CceEEEECCEEEEEccCCCCcccceeEEeeCCCCCeeec--CCcccccccceEEeecceeeEeeCceeeeeEeEEEEeee
Q psy9769 813 GAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGV--PDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISVRGV 890 (1026)
Q Consensus 813 ~~~~~~~~~~i~v~Gg~~~~~~~~~v~~~d~~~~~w~~~--~~~~~~r~~~~~~~~~~~~~~~~G~~~~g~v~~i~~~g~ 890 (1026)
...... .+.|.. ....+...+....-.... .+|+.. .-.+.-|....+.+.+|...|.
T Consensus 739 ~t~~~~-----lv~gq~----~~~~i~~isl~k~lv~~s~~~~L~~~-----------~~~l~k~~~~~~~v~~is~~~~ 798 (1710)
T KOG1070|consen 739 NTSLLH-----LVVGQV----TVGVILSISLKKSLVLISLCTDLPNN-----------ATKLLKGSYALALVRSISKEGK 798 (1710)
T ss_pred cchhhe-----eeecce----eEEEEEEeehhhhhhhccccccccch-----------HHHHhcCchhHHHHHhhhhhee
Confidence 111000 111111 111112122111100000 111111 1223356667778899999999
Q ss_pred EEEeccceeeeecccceee----CCccccccCcEEe---------------------ecCeEEEehhh-hhcccCC----
Q psy9769 891 IAQVGYYKLKATCENEYVE----GNKADIKVGDEVQ---------------------AKNSIEVAFKS-LYRIAQP---- 940 (1026)
Q Consensus 891 ~v~l~~~~~~~~~~~~~~~----~~~~~~kvG~~v~---------------------~~~~i~ls~K~-l~~~~~~---- 940 (1026)
|+++.+ ++-++++..+.. .+-.+...||.+. .++... ..|- .-..++|
T Consensus 799 ~~a~~~-~~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~~~~~~~~a~e~p~~K~~~~-~~~~~~~~~d~~Vd~a 876 (1710)
T KOG1070|consen 799 FVAFVS-NLIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEPKVVKDLKAVEKPKKKKEKK-FIKVSSNDSDNEVDLA 876 (1710)
T ss_pred heeecc-cccceeeccccccccccccceeeeecccceEEEecChhHHHHHHhhcchhhcccee-EEEeccccCCCccccc
Confidence 999988 666666553310 0011122223322 022221 2222 1122333
Q ss_pred CCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCc--ccccCcccccccCCEEEEEEEEE-eCCeeeec
Q psy9769 941 LTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ--ATRTLVYTRFVIDTVIVCQILKY-EDGELLLT 1015 (1026)
Q Consensus 941 ~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~--~~~~~~~~~~~~G~~V~~~Vl~v-d~~~~~~~ 1015 (1026)
+++-++...|++++++|++|.++++-|-|..++.|=||.+|+-+ ..+.+|.+.|++||.|.|||+.. |-+.+-+|
T Consensus 877 ~k~~~~~~igsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D~k~lpit 954 (1710)
T KOG1070|consen 877 IKSTEDLSIGSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHDVKDLPIT 954 (1710)
T ss_pred cccccceeeeeEEEEEEeeecccceEEeccccccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCccccCccc
Confidence 66677778899999999999999999999999999999999977 56889999999999999999976 44444443
No 45
>KOG4152|consensus
Probab=99.81 E-value=6.6e-19 Score=187.01 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=95.9
Q ss_pred CcEEEc----CCCCccccceeeEEECCEEEEEeccCC----CeEEEeCCCCeEEeC---CCCcCCcceeEEEEECCEEEE
Q psy9769 344 ERWQSV----AEMPTRRCRAGLVFLHEKVYAVGGFNG----SLRVYDPSTNEWSSA---PPMEARRSTLGVAVLNSLIYA 412 (1026)
Q Consensus 344 ~~W~~~----~~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv 412 (1026)
-+|+.+ .|.|.+|++|.++++..-|.+|||-+. .+++||..+++|..- .++|.+.+.|+.+..+.+||+
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 357765 568899999999999999999998763 689999999999753 478989999999889999999
Q ss_pred EeccCCCC-CCCEEEEEECCCCcEEEcc-------CCCCCcceeEEEEECCEEEEEeCC
Q psy9769 413 VGGFDGSS-GLNSAEVYDPSTEKWNMIA-------PMSTRRSSVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 413 ~GG~~~~~-~~~~v~~yd~~~~~W~~~~-------~~p~~r~~~~~~~~~~~lyv~GG~ 463 (1026)
|||....+ +.++++.+-.....|+.+. ..|+||-+|+...++++-|+|||-
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGL 155 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGL 155 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccc
Confidence 99986543 3555443333334455553 567999999999999999999993
No 46
>KOG4682|consensus
Probab=99.78 E-value=7.5e-19 Score=182.34 Aligned_cols=181 Identities=25% Similarity=0.287 Sum_probs=172.6
Q ss_pred HHHHHhcCCCccEEEEECCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEe----cCCCHHHHHHHhhheecceeee
Q psy9769 56 MNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVL----KGVDPNALKLLIDYVYSCEIYV 130 (1026)
Q Consensus 56 l~~l~~~~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l----~~~~~~~f~~~l~~~Ytg~~~i 130 (1026)
.+.|+.++.-+||.+.+=|...+.||.-|. .|+||.+||. .|+|++...|.+ +.++.++|..++.-||..++.|
T Consensus 60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI 138 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEI 138 (488)
T ss_pred HHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheec
Confidence 577889999999999999999999999999 5999999999 899999987777 5789999999999999999999
Q ss_pred chhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCHhh
Q psy9769 131 TEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQ 210 (1026)
Q Consensus 131 ~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~~~ 210 (1026)
+.+.++.++.+|.+++++.|.+.|.+.|.+.+++++++..|..+..|+...+.+.|.+++..|+..+.....|.+++.+.
T Consensus 139 ~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~L 218 (488)
T KOG4682|consen 139 KLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINL 218 (488)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877889999999
Q ss_pred Hhceeccccccccc-hhhHHHHHHHHHh
Q psy9769 211 VLGLISSDKLMVSN-EEKVFECVIAWVN 237 (1026)
Q Consensus 211 l~~ll~~~~l~v~~-E~~v~~av~~Wi~ 237 (1026)
+..++.|++|.+.. |.++|..+..|+-
T Consensus 219 m~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 219 MKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred HHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 99999999999876 9999999999975
No 47
>KOG0379|consensus
Probab=99.77 E-value=4.2e-18 Score=197.39 Aligned_cols=175 Identities=22% Similarity=0.378 Sum_probs=147.8
Q ss_pred CCCCCCCCccCCcEEEEEcCCC--CCCCcEEEEEECCCCcEEEcC---CCCccccceeeEEECCEEEEEeccC------C
Q psy9769 308 PRTKPRQPLRVPKVMLVVGGQA--PKAIRSVECYDFKTERWQSVA---EMPTRRCRAGLVFLHEKVYAVGGFN------G 376 (1026)
Q Consensus 308 ~~~~~~~~~~~~~~i~v~GG~~--~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~------~ 376 (1026)
||..+... ++++.||++||.+ ....+++++||+.+++|..+. .+|.+|.+|++++++++||||||.+ +
T Consensus 112 ~r~g~~~~-~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~n 190 (482)
T KOG0379|consen 112 PRYGHSLS-AVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLN 190 (482)
T ss_pred cccceeEE-EECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccccee
Confidence 44444333 4679999999987 445789999999999999864 4689999999999999999999975 3
Q ss_pred CeEEEeCCCCeEEeCC---CCcCCcceeEEEEECCEEEEEeccC-CCCCCCEEEEEECCCCcEEEcc---CCCCCcceeE
Q psy9769 377 SLRVYDPSTNEWSSAP---PMEARRSTLGVAVLNSLIYAVGGFD-GSSGLNSAEVYDPSTEKWNMIA---PMSTRRSSVG 449 (1026)
Q Consensus 377 ~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~ 449 (1026)
++|+||+.+.+|.++. +.|.||++|+++++++++|++||.+ +..++++++.+|+.+.+|..+. .+|.||+.|+
T Consensus 191 dl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~ 270 (482)
T KOG0379|consen 191 DLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHS 270 (482)
T ss_pred eeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceee
Confidence 7899999999999864 6788999999999999999999988 6667999999999999999665 6789999999
Q ss_pred EEEECCEEEEEeCCCc--------eeeEEcCcccEEEeecCC
Q psy9769 450 VGVLNGCLYAENLDGR--------ILGCVKEITDWGLIIELP 483 (1026)
Q Consensus 450 ~~~~~~~lyv~GG~~~--------~~~~~~~~~~W~~~~~lP 483 (1026)
.+..+++++++||... .+.++..+..|..+..++
T Consensus 271 ~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 271 LTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred eEEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 9999999999998543 244566777898886665
No 48
>KOG4152|consensus
Probab=99.77 E-value=6.3e-18 Score=179.68 Aligned_cols=185 Identities=18% Similarity=0.330 Sum_probs=139.3
Q ss_pred eccCCCCCCCCccCCcEEEEEcCCCCCCCcEEEEEECCCCcEEE---cCCCCccccceeeEEECCEEEEEeccCC----C
Q psy9769 305 VRTPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQS---VAEMPTRRCRAGLVFLHEKVYAVGGFNG----S 377 (1026)
Q Consensus 305 ~~~~~~~~~~~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~---~~~~p~~r~~~~~~~~~~~iyv~GG~~~----~ 377 (1026)
.+.||..||+. .+.+.|++|||-+....+.++.||..+++|.. ..+.|.+-..|+.+..+.+||+|||+.. +
T Consensus 29 vPrpRHGHRAV-aikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYs 107 (830)
T KOG4152|consen 29 VPRPRHGHRAV-AIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYS 107 (830)
T ss_pred CCCccccchhe-eeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeecccc
Confidence 34566666665 47889999999988888999999999999975 3578888888999999999999999642 2
Q ss_pred eEEEeCCC--CeEEeCC-------CCcCCcceeEEEEECCEEEEEeccCCC---------CCCCEEEEEECCCCc----E
Q psy9769 378 LRVYDPST--NEWSSAP-------PMEARRSTLGVAVLNSLIYAVGGFDGS---------SGLNSAEVYDPSTEK----W 435 (1026)
Q Consensus 378 ~~~yd~~~--~~W~~~~-------~~p~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~v~~yd~~~~~----W 435 (1026)
-..|.+.. ..|+++. ++|.||-+|+...++++-|+|||..++ .++++++..++..+. |
T Consensus 108 NdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W 187 (830)
T KOG4152|consen 108 NDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAW 187 (830)
T ss_pred chHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEE
Confidence 33455554 4455542 578999999999999999999996322 348899998887443 8
Q ss_pred EEc---cCCCCCcceeEEEEE------CCEEEEEeCCC-----ceeeEEcCcccEEEe-----ecCCCcccceE
Q psy9769 436 NMI---APMSTRRSSVGVGVL------NGCLYAENLDG-----RILGCVKEITDWGLI-----IELPNFLSASV 490 (1026)
Q Consensus 436 ~~~---~~~p~~r~~~~~~~~------~~~lyv~GG~~-----~~~~~~~~~~~W~~~-----~~lP~~~~g~~ 490 (1026)
... ..+|.||.+|+++++ ..++||+||.. ..+.+|.++.+|... ++||+.++..+
T Consensus 188 ~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~ 261 (830)
T KOG4152|consen 188 DIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSAT 261 (830)
T ss_pred ecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCCcccccce
Confidence 754 378999999999998 34899999954 344556677777543 45666553333
No 49
>KOG4591|consensus
Probab=99.75 E-value=1.7e-18 Score=162.16 Aligned_cols=171 Identities=25% Similarity=0.349 Sum_probs=152.7
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEEEC---CEEEEEEhhhhhccChhhHhhhcCCccCcccEEEecCCCHHHHHHHhhh
Q psy9769 46 VHHTSKAFETMNIMRKQNLLCDVKLIAD---GVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDY 122 (1026)
Q Consensus 46 ~~~~~~l~~~l~~l~~~~~~~Dv~i~v~---~~~~~~Hr~vL~~~S~yF~~mf~~~~e~~~~~i~l~~~~~~~f~~~l~~ 122 (1026)
.+..++++.-..+++....|||++|.++ ++.++|||.||++||+++. |.+.......+..+.+.++++|..+++|
T Consensus 47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iRW 124 (280)
T KOG4591|consen 47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIRW 124 (280)
T ss_pred hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhhee
Confidence 3577899999999999999999999998 5899999999999999876 4433333456678889999999999999
Q ss_pred eecceeeech--hhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecc
Q psy9769 123 VYSCEIYVTE--ENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVEC 200 (1026)
Q Consensus 123 ~Ytg~~~i~~--~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~ 200 (1026)
|||.++++.. .-+.+++.+|+.|+++-|++.|+.-+-..+..+||+.+|.+|++.+...|...|.+.|+.++..+ ..
T Consensus 125 IYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~ 203 (280)
T KOG4591|consen 125 IYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GK 203 (280)
T ss_pred eeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-Ch
Confidence 9999998755 45789999999999999999999999999999999999999999999999999999999999887 56
Q ss_pred cccccCCHhhHhceecccc
Q psy9769 201 EEFLSLSHEQVLGLISSDK 219 (1026)
Q Consensus 201 ~~f~~L~~~~l~~ll~~~~ 219 (1026)
.+|.++++..|..++.+..
T Consensus 204 a~FaqMs~aLLYklId~kT 222 (280)
T KOG4591|consen 204 ADFAQMSAALLYKLIDGKT 222 (280)
T ss_pred HHHHhccHHHHHHHHcCCC
Confidence 6899999999999998753
No 50
>KOG1230|consensus
Probab=99.73 E-value=2.9e-17 Score=171.33 Aligned_cols=185 Identities=21% Similarity=0.335 Sum_probs=145.9
Q ss_pred eccccceee--eeccCCCCCCCCccCCcEEEEEcCCC--C-----CCCcEEEEEECCCCcEEEc--CCCCccccceeeEE
Q psy9769 295 KKGEVNKLT--LVRTPRTKPRQPLRVPKVMLVVGGQA--P-----KAIRSVECYDFKTERWQSV--AEMPTRRCRAGLVF 363 (1026)
Q Consensus 295 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~v~GG~~--~-----~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~ 363 (1026)
.+.+|+.+. ..|+||..|.+++...+.+|++||.- + ....++|.||..+++|+++ +.-|.||++|.+++
T Consensus 106 k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMva 185 (521)
T KOG1230|consen 106 KKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVA 185 (521)
T ss_pred cccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEE
Confidence 356676543 23566777766665568999999952 1 3468999999999999987 45789999999999
Q ss_pred ECCEEEEEeccC---------CCeEEEeCCCCeEEeCCC---CcCCcceeEEEEE-CCEEEEEeccCC---------CCC
Q psy9769 364 LHEKVYAVGGFN---------GSLRVYDPSTNEWSSAPP---MEARRSTLGVAVL-NSLIYAVGGFDG---------SSG 421 (1026)
Q Consensus 364 ~~~~iyv~GG~~---------~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~-~~~iyv~GG~~~---------~~~ 421 (1026)
...+|++|||+- +++|+||+.|-+|+.+.+ -|.||++|+..+. +|.|||.||+.. ...
T Consensus 186 wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~ 265 (521)
T KOG1230|consen 186 WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTR 265 (521)
T ss_pred eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCce
Confidence 999999999963 479999999999998754 4899999999988 999999999742 233
Q ss_pred CCEEEEEECCC-----CcEEEccC---CCCCcceeEEEEE-CCEEEEEeCCC---------------ceeeEEcCcccEE
Q psy9769 422 LNSAEVYDPST-----EKWNMIAP---MSTRRSSVGVGVL-NGCLYAENLDG---------------RILGCVKEITDWG 477 (1026)
Q Consensus 422 ~~~v~~yd~~~-----~~W~~~~~---~p~~r~~~~~~~~-~~~lyv~GG~~---------------~~~~~~~~~~~W~ 477 (1026)
.++++.++|.+ -.|+.+.+ -|.||+++++++. +++-|.|||.. .++.|+...++|.
T Consensus 266 hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~ 345 (521)
T KOG1230|consen 266 HSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWS 345 (521)
T ss_pred eeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhh
Confidence 68999999988 56887763 4799999999988 55999999943 2234555667786
Q ss_pred Ee
Q psy9769 478 LI 479 (1026)
Q Consensus 478 ~~ 479 (1026)
..
T Consensus 346 ~~ 347 (521)
T KOG1230|consen 346 EG 347 (521)
T ss_pred Hh
Confidence 55
No 51
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.70 E-value=5.1e-17 Score=150.67 Aligned_cols=106 Identities=39% Similarity=0.626 Sum_probs=96.8
Q ss_pred HHHHHhcCCCccEEEEEC-CEEEEEEhhhhhccChhhHhhhc-C-CccCcccEEEecCCCHHHHHHHhhheecceeeec-
Q psy9769 56 MNIMRKQNLLCDVKLIAD-GVEVAAHKMVLAACSPYFHAMFI-S-FEESKQERIVLKGVDPNALKLLIDYVYSCEIYVT- 131 (1026)
Q Consensus 56 l~~l~~~~~~~Dv~i~v~-~~~~~~Hr~vL~~~S~yF~~mf~-~-~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~- 131 (1026)
|+++++++.++|++|.++ +.+|+|||.+|+++|+||++||. . +.+....+|.++++++++|..+++|+|++++.++
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~ 80 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINS 80 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCCH
Confidence 678999999999999999 79999999999999999999999 5 5677767899999999999999999999999998
Q ss_pred hhhHHHHHHHHHhcCchhHHhHHHHhhhcc
Q psy9769 132 EENVQMLLPAANLLQLTDVRDACCDFLQCQ 161 (1026)
Q Consensus 132 ~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~ 161 (1026)
.+++.+++.+|++|+++.|++.|.++|.++
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999764
No 52
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.6e-16 Score=133.35 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=71.5
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeechhhhhhhc
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTEADEKLHK 1023 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~~~~~~~ 1023 (1026)
.++|++++|+|+.|++||+||+|++|=.||||+||+++.++.|..+++++||+|+|+||+||+ +.++++++.+++.
T Consensus 3 ~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 3 MKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred ccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 367999999999999999999999999999999999999999999999999999999999999 8899877777654
No 53
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.55 E-value=2.4e-15 Score=137.28 Aligned_cols=102 Identities=36% Similarity=0.652 Sum_probs=94.0
Q ss_pred hhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCHhhHhceeccccccccchhhHHHHHHHHHhcChhHHHHH
Q psy9769 167 CLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKH 246 (1026)
Q Consensus 167 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~ 246 (1026)
|+.++.+|..|++.+|.+.|.+||..||.++.++++|.+||.+.+..+|+++++++.+|.++|+++++|++++...|.++
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCHHHHHhhc
Q psy9769 247 VAELMEYVRLPLLSEDYLIQRV 268 (1026)
Q Consensus 247 ~~~ll~~vr~~~l~~~~l~~~~ 268 (1026)
+.+|+++|||++|+++.|.+.+
T Consensus 81 ~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 81 LKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHhCCcccCCHHHHHHHH
Confidence 9999999999999999998765
No 54
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.55 E-value=1.4e-14 Score=121.29 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=63.3
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCc---ccccccCCEEEEEEEEEeCCeeeech
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLV---YTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~---~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
++|++|.|+|++++++|+||++.++++|++|.++|||..+.+| .+.|++||.|+|+|+++|+++.+++.
T Consensus 2 k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~L 73 (74)
T cd05705 2 KEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVEL 73 (74)
T ss_pred CCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEec
Confidence 6799999999999999999999999999999999999887775 58999999999999999998776653
No 55
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.50 E-value=5.3e-14 Score=124.71 Aligned_cols=89 Identities=43% Similarity=0.770 Sum_probs=84.5
Q ss_pred cEEEEECCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhheecceeeechhhHHHHHHHHHhc
Q psy9769 67 DVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLL 145 (1026)
Q Consensus 67 Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~~ll~~A~~l 145 (1026)
|++|.++++.|++||.+|+++|+||++||. ++.+.....+.+++.++.+|+.+++|+|++++.++..++.+++.+|++|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYL 80 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999 7777778899999999999999999999999999999999999999999
Q ss_pred CchhHHhHHH
Q psy9769 146 QLTDVRDACC 155 (1026)
Q Consensus 146 ~l~~L~~~c~ 155 (1026)
+++.|.+.|+
T Consensus 81 ~~~~l~~~c~ 90 (90)
T smart00225 81 QIPGLVELCE 90 (90)
T ss_pred CcHHHHhhhC
Confidence 9999999884
No 56
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.47 E-value=9.5e-14 Score=116.15 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=63.2
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCccc--ccCcccccccCCEEEEEEEEEeCCeeeechh
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQAT--RTLVYTRFVIDTVIVCQILKYEDGELLLTEA 1017 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~--~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~ 1017 (1026)
|++|.|+|+++.++|+||++.++|+|++|.++|++.. .+++.+.|++||.|+|+|+++|+++.+++.+
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls 70 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLS 70 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEE
Confidence 8999999999999999999999999999999999863 8889999999999999999999998777654
No 57
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.43 E-value=2.7e-13 Score=117.41 Aligned_cols=75 Identities=25% Similarity=0.347 Sum_probs=69.3
Q ss_pred CCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 941 LTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 941 ~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+.++.++++|+++.|+|+++.++|+||+++++++||+|.+++++.++.+|.+.|++||+|+|+|+++|+++.+++
T Consensus 6 ~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~ 80 (83)
T cd04461 6 PTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFL 80 (83)
T ss_pred hhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEE
Confidence 567888899999999999999999999999999999999999999999999999999999999999998655543
No 58
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.43 E-value=3.6e-13 Score=112.47 Aligned_cols=70 Identities=11% Similarity=0.287 Sum_probs=61.8
Q ss_pred cCCCCcEEEEEEEEEecceEEEEeC-CCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeechhhhhh
Q psy9769 946 HTKPGRLVWGVLKEKMPGGVRVEFD-GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTEADEKL 1021 (1026)
Q Consensus 946 ~~~~G~~v~G~V~~i~~~G~fV~~~-~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~~~~~ 1021 (1026)
|+++|++++|+|++|+++|+||+|+ +|++||+|++++++. +.|++||+|.|+|++||+++.+++.+-+++
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 4678999999999999999999996 699999999999876 679999999999999999887776554443
No 59
>KOG0783|consensus
Probab=99.43 E-value=5.3e-14 Score=157.84 Aligned_cols=149 Identities=21% Similarity=0.302 Sum_probs=126.2
Q ss_pred CccEEEEE-CCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhheec-ceeee-----chhhHH
Q psy9769 65 LCDVKLIA-DGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDYVYS-CEIYV-----TEENVQ 136 (1026)
Q Consensus 65 ~~Dv~i~v-~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt-g~~~i-----~~~~v~ 136 (1026)
.-|+.|.+ +|+.++||+++|++|++||..||. .|.|++...+.+..+..+.+..+|+|+|+ .+..+ ..+-+.
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~ 789 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMF 789 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhH
Confidence 33555555 778899999999999999999999 89998887676666779999999999995 44322 335578
Q ss_pred HHHHHHHhcCchhHHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCHhhHhc
Q psy9769 137 MLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLG 213 (1026)
Q Consensus 137 ~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~ 213 (1026)
+++.+||.|.+.+|+..|+.-|.+.++..+|-.++.||..|++.+|...|++||+.|+..++......+++-..|.+
T Consensus 790 ~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~~dg~~LK~ 866 (1267)
T KOG0783|consen 790 EILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISEWDGFHLKK 866 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhhhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887766555555544443
No 60
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.42 E-value=4.6e-13 Score=111.90 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=64.4
Q ss_pred CCCcEEEEEEEEEec-ceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 948 KPGRLVWGVLKEKMP-GGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~-~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
++|+++.|+|+++.+ +|+||+++++.+|++|.++++++++++|.+.|++||.|+|+|+++|+.++.||
T Consensus 2 ~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~~~i~LS 70 (72)
T cd05704 2 EEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKDGKYQLS 70 (72)
T ss_pred CCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecCCEEEEE
Confidence 579999999999986 89999999999999999999999999999999999999999999998888776
No 61
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.42 E-value=4.4e-13 Score=111.62 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=62.9
Q ss_pred CcEEE-EEEEEE-ecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeech
Q psy9769 950 GRLVW-GVLKEK-MPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 950 G~~v~-G~V~~i-~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
|+++. |+|+++ .++|+||++.+|++||+|.+++++++++++.+.|++||.|+|+|+++|+++.+++.
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~l 69 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQL 69 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEE
Confidence 78999 999999 69999999999999999999999999999999999999999999999999887764
No 62
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.40 E-value=6.4e-13 Score=120.73 Aligned_cols=99 Identities=52% Similarity=0.837 Sum_probs=92.9
Q ss_pred hhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCHhhHhceeccccccccchhhHHHHHHHHHhcChhHHHHH
Q psy9769 167 CLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKH 246 (1026)
Q Consensus 167 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~ll~~~~l~v~~E~~v~~av~~Wi~~~~~~r~~~ 246 (1026)
|+.++.+|+.|++..|.+.|.+||.+||..+.++++|.+||.+.+..+|+++++++.+|.++|+++++|++++...|. .
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~-~ 79 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR-H 79 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-H
Confidence 678889999999999999999999999999999999999999999999999999988899999999999999987665 8
Q ss_pred HHHHHhhcccCCCCHHHHHh
Q psy9769 247 VAELMEYVRLPLLSEDYLIQ 266 (1026)
Q Consensus 247 ~~~ll~~vr~~~l~~~~l~~ 266 (1026)
+..++++|||++|+++.+..
T Consensus 80 ~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 80 LPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHhCCCCCCCHHHHHh
Confidence 89999999999999987764
No 63
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.38 E-value=8e-13 Score=110.60 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=61.7
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
|+++.|+|++++++|+||+|+++++||+|.++|+++.+.+|.+.|++||+|+|+|+++|+++.++.
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ 66 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLL 66 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEE
Confidence 899999999999999999999999999999999998899999999999999999999999765543
No 64
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.38 E-value=1.1e-12 Score=108.77 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=62.3
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
|+++.|+|+++.++|+||+|+++++||+|.+++++...+++.+.|++||.|+|+|+++|+++.++.
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ 66 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIE 66 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEe
Confidence 789999999999999999999999999999999999899999999999999999999999776654
No 65
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.38 E-value=2.2e-11 Score=126.68 Aligned_cols=169 Identities=23% Similarity=0.319 Sum_probs=123.9
Q ss_pred CCccCCcEEEEEcCCCCCCCcEEEEEECC--CCcEEEcCCCC-ccccceeeEEECCEEEEEeccC----------CCeEE
Q psy9769 314 QPLRVPKVMLVVGGQAPKAIRSVECYDFK--TERWQSVAEMP-TRRCRAGLVFLHEKVYAVGGFN----------GSLRV 380 (1026)
Q Consensus 314 ~~~~~~~~i~v~GG~~~~~~~~~~~yd~~--~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~----------~~~~~ 380 (1026)
+....++.+||.=|..+ ...+..|.. ...|+.++..| .+|....+++++++||+|||.. +++++
T Consensus 41 ~Ga~ig~~~YVGLGs~G---~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~ 117 (381)
T COG3055 41 AGALIGDTVYVGLGSAG---TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYR 117 (381)
T ss_pred ccceecceEEEEeccCC---ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEE
Confidence 44446778888767322 355666654 46899999988 5799999999999999999975 26889
Q ss_pred EeCCCCeEEeCCC-CcCCcceeEEEEECC-EEEEEeccCC----------------------------------CCCCCE
Q psy9769 381 YDPSTNEWSSAPP-MEARRSTLGVAVLNS-LIYAVGGFDG----------------------------------SSGLNS 424 (1026)
Q Consensus 381 yd~~~~~W~~~~~-~p~~r~~~~~~~~~~-~iyv~GG~~~----------------------------------~~~~~~ 424 (1026)
|||.+|+|.++.. .|....++.++.+++ +||++||.+. ......
T Consensus 118 y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~e 197 (381)
T COG3055 118 YDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE 197 (381)
T ss_pred ecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccc
Confidence 9999999998864 466677888888887 9999999531 112568
Q ss_pred EEEEECCCCcEEEccCCC-CCcceeEEEEECCEEEEEeCCC---------ceeeEEcCcccEEEeecCCCc
Q psy9769 425 AEVYDPSTEKWNMIAPMS-TRRSSVGVGVLNGCLYAENLDG---------RILGCVKEITDWGLIIELPNF 485 (1026)
Q Consensus 425 v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~---------~~~~~~~~~~~W~~~~~lP~~ 485 (1026)
+..|||.+++|+.+...| .++++.+.+.-+|++.++-|.- ....+....-+|..+.++|.+
T Consensus 198 v~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 198 VLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred ccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCC
Confidence 999999999999999777 5677755555578788887732 111222344567777777653
No 66
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.37 E-value=1.4e-12 Score=108.64 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=61.0
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|+++.|+|+++.++|+||+++++++|++|.+++++....++.+.|++||+++|+|+++|+++.++
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i 65 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRL 65 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEE
Confidence 79999999999999999999999999999999999888889999999999999999999965544
No 67
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.35 E-value=2.4e-12 Score=105.34 Aligned_cols=65 Identities=14% Similarity=0.226 Sum_probs=58.6
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeech
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
|++|+|+|+++.++|+||++.++++|++|.+++++.... .+.|++||.|+|+|+++|+++.++..
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~L 65 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGL 65 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEec
Confidence 899999999999999999999999999999999875544 67899999999999999998877653
No 68
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.34 E-value=3.3e-12 Score=106.65 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=62.1
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCc-ccccCcccccccCCEEEEEEEEEeCCeeeech
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ-ATRTLVYTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~-~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
|+++.|+|+++++||+||+|+++++||+|.++++| ..+.++.+.|++||+|+|+|+++|+++.++..
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l 68 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISL 68 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeC
Confidence 78999999999999999999999999999999997 67788999999999999999999998877653
No 69
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.32 E-value=6.4e-12 Score=106.46 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=64.6
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
.++|++++|+|++++++|+||+|.++++|++|.+++++....++.+.|++||+|+|+|+++|+++..+.
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~ 70 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIR 70 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEE
Confidence 467999999999999999999999999999999999999999999999999999999999999866553
No 70
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.31 E-value=7.7e-12 Score=105.57 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=61.9
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
++|+++.|+|++++++|+||+++++++|++|.+++++.+..++.+.|++||.|+|+|+++|+++..+
T Consensus 2 ~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i 68 (73)
T cd05706 2 KVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKI 68 (73)
T ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEE
Confidence 5799999999999999999999999999999999999888788899999999999999999865443
No 71
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.28 E-value=4.5e-12 Score=134.08 Aligned_cols=72 Identities=15% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCcEEEEEEEEEecceEEEEeC--CCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeechhhhh
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFD--GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTEADEK 1020 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~--~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~~~~ 1020 (1026)
+|++|.|+|++|.+||+||++. +|++||||.|+|||.++.+|++.+++||+|.|+||+||+++.+++.+-++
T Consensus 17 ~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~ 90 (319)
T PTZ00248 17 EDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKR 90 (319)
T ss_pred CCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeee
Confidence 3999999999999999999996 79999999999999999999999999999999999999988877644433
No 72
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.27 E-value=1.2e-11 Score=103.90 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCe-eeec
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE-LLLT 1015 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~-~~~~ 1015 (1026)
.|+++.|+|+++++||+||++.+ +++||+|.+++++.++.++.+.|++||+|+++|+++|.++ +.||
T Consensus 3 ~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~ki~ls 71 (73)
T cd05686 3 LYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKDKMKLS 71 (73)
T ss_pred CCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCCcEEEE
Confidence 59999999999999999999954 3799999999999999999999999999999999999975 3443
No 73
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.27 E-value=1.4e-13 Score=145.34 Aligned_cols=133 Identities=15% Similarity=0.094 Sum_probs=113.0
Q ss_pred eeCceeeeeEeEEEEeeeEEEeccc-eeeeeccc-----ceeeCCccccccCcEEee--------cCeEEEehhhhhccc
Q psy9769 873 NLGDEVSCVVKGISVRGVIAQVGYY-KLKATCEN-----EYVEGNKADIKVGDEVQA--------KNSIEVAFKSLYRIA 938 (1026)
Q Consensus 873 ~~G~~~~g~v~~i~~~g~~v~l~~~-~~~~~~~~-----~~~~~~~~~~kvG~~v~~--------~~~i~ls~K~l~~~~ 938 (1026)
..|+.+.|+|++|.+||+||+|.+| |++|++|. .++.++++.+|+||++.. +++|.||+|++.+
T Consensus 16 ~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~-- 93 (319)
T PTZ00248 16 EEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRVSP-- 93 (319)
T ss_pred CCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeeccc--
Confidence 3699999999999999999999855 89999999 447788888999999883 7899999999744
Q ss_pred CCCCccccCCC-CcEEEEEEEEEe-cceEEEE------eCCCceeeEeccccCcccccCcccccc---cCCEEEEEEEEE
Q psy9769 939 QPLTSVKHTKP-GRLVWGVLKEKM-PGGVRVE------FDGDISGVFPTSAMSQATRTLVYTRFV---IDTVIVCQILKY 1007 (1026)
Q Consensus 939 ~~~~~~~~~~~-G~~v~G~V~~i~-~~G~fV~------~~~~i~Gl~~~~~ls~~~~~~~~~~~~---~G~~V~~~Vl~v 1007 (1026)
.||..+.+.++ |++++|+|+++. ++|++++ ....++++.|..++....+.+|.+.|+ +++.++.+++++
T Consensus 94 ~pw~~~~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~pl~~~~gh~y~af~~~v~~~~evl~~l~i~~ev~~~l~~~ 173 (319)
T PTZ00248 94 EDIEACEEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWPLYKKYGHALDALKEALTNPDNVFEGLDIPEEVKESLLQD 173 (319)
T ss_pred chHHHHHHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhcCchhhhccCCCCHHHHHHHHHH
Confidence 46667666666 999999999995 5999999 677899999999998888888887887 888777666543
No 74
>PRK08582 hypothetical protein; Provisional
Probab=99.25 E-value=2.5e-11 Score=114.61 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=63.9
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC-Ceeeec
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED-GELLLT 1015 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~ 1015 (1026)
.++|++|.|+|++|++||+||+|+++++||||.+++++.++.++.+.|++||.|+|+|++||+ .++.||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~~gkI~LS 72 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVEDDGKIGLS 72 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECCCCcEEEE
Confidence 467999999999999999999999999999999999999999999999999999999999997 455554
No 75
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.25 E-value=2.8e-11 Score=101.81 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=61.5
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcc-cccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQA-TRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~-~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
.+|+++.|+|++|+++|+||+|+++++||+|.++++|. ...++.+.|++||+|+|+|+++|+++.++.
T Consensus 2 ~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~ 70 (72)
T cd05689 2 PEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRIS 70 (72)
T ss_pred cCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEe
Confidence 46999999999999999999999999999999999874 555788899999999999999999877664
No 76
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.24 E-value=1.6e-11 Score=103.81 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=61.7
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
|+++.|+|+++.++|+||++.++++|++|.+++++.++.++.+.|++||.|+|+|+++|+++..+.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ 66 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKIS 66 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEE
Confidence 789999999999999999999999999999999998888999999999999999999999755443
No 77
>PRK07252 hypothetical protein; Provisional
Probab=99.22 E-value=2.7e-11 Score=111.04 Aligned_cols=67 Identities=13% Similarity=0.212 Sum_probs=62.2
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
++|+++.|+|++|+++|+||+|+++++||+|.++|+++++.++.+.|++||.|+|+|+++|++..++
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri 68 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKA 68 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEE
Confidence 5699999999999999999999999999999999999999999999999999999999999855443
No 78
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=2.6e-11 Score=107.68 Aligned_cols=69 Identities=19% Similarity=0.359 Sum_probs=61.4
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCccc-------------------ccCcccccccCCEEEEEEEEEe
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQAT-------------------RTLVYTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~-------------------~~~~~~~~~~G~~V~~~Vl~vd 1008 (1026)
++|++|.|+|++|.++|+||+++++++|++|.++++|.+ ..++.+.|++||.|+|+|+++|
T Consensus 2 ~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~d 81 (100)
T cd05693 2 SEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSLD 81 (100)
T ss_pred CCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEcc
Confidence 679999999999999999999999999999999999854 3457889999999999999999
Q ss_pred CC-----eeeech
Q psy9769 1009 DG-----ELLLTE 1016 (1026)
Q Consensus 1009 ~~-----~~~~~~ 1016 (1026)
++ .+.||.
T Consensus 82 ~~~~~~~~i~LSl 94 (100)
T cd05693 82 KSKSGKKRIELSL 94 (100)
T ss_pred CCcCCCcEEEEEe
Confidence 86 555553
No 79
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.20 E-value=4.1e-11 Score=102.16 Aligned_cols=66 Identities=17% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCCcEEEEEEEEEecceEEEEeCC--CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeee
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDG--DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELL 1013 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~--~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~ 1013 (1026)
++|+++.|+|+++.++|+||++.+ +++||+|.+++++.++.++.+.|++||+|+|+|+++|..+..
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~ 69 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGY 69 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCE
Confidence 469999999999999999999974 699999999999999999999999999999999999985433
No 80
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.20 E-value=4e-10 Score=117.51 Aligned_cols=200 Identities=21% Similarity=0.261 Sum_probs=137.8
Q ss_pred cccceeeeec-cCCCCCCCCccCCcEEEEEcCCC------CCCCcEEEEEECCCCcEEEcCC-CCccccceeeEEECC-E
Q psy9769 297 GEVNKLTLVR-TPRTKPRQPLRVPKVMLVVGGQA------PKAIRSVECYDFKTERWQSVAE-MPTRRCRAGLVFLHE-K 367 (1026)
Q Consensus 297 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~GG~~------~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~-~ 367 (1026)
..|......+ .+|..+.. ...+++||++||.. ....+++++|||.+|+|+.+.. .|....+++++.+++ +
T Consensus 70 k~W~~~a~FpG~~rnqa~~-a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~ 148 (381)
T COG3055 70 KGWTKIADFPGGARNQAVA-AVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTK 148 (381)
T ss_pred CCceEcccCCCcccccchh-eeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCce
Confidence 3455444333 23444333 34689999999974 2346889999999999999864 466678899999998 9
Q ss_pred EEEEeccCC---------------------------------------CeEEEeCCCCeEEeCCCCc-CCcceeEEEEEC
Q psy9769 368 VYAVGGFNG---------------------------------------SLRVYDPSTNEWSSAPPME-ARRSTLGVAVLN 407 (1026)
Q Consensus 368 iyv~GG~~~---------------------------------------~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~ 407 (1026)
||++||.+. .+..|+|.+++|+.+...| .++++.+.+.-+
T Consensus 149 i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~ 228 (381)
T COG3055 149 IYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKG 228 (381)
T ss_pred EEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecC
Confidence 999999751 3556999999999998666 566665555557
Q ss_pred CEEEEEeccCC-CCCCCEEEEEECC--CCcEEEccCCCCCccee-------EEEEECCEEEEEeCCCc------------
Q psy9769 408 SLIYAVGGFDG-SSGLNSAEVYDPS--TEKWNMIAPMSTRRSSV-------GVGVLNGCLYAENLDGR------------ 465 (1026)
Q Consensus 408 ~~iyv~GG~~~-~~~~~~v~~yd~~--~~~W~~~~~~p~~r~~~-------~~~~~~~~lyv~GG~~~------------ 465 (1026)
+++.++-|.-. .-++..+..++.. .-+|..++++|.+.+.- -.-..++.+.|.||.+.
T Consensus 229 n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~ 308 (381)
T COG3055 229 NKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKF 308 (381)
T ss_pred CeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhccc
Confidence 77888888643 3346677777765 45799999888665422 11234788888888430
Q ss_pred -----------eeeEEcCcccEEEeecCCCcccceEEEeeecc
Q psy9769 466 -----------ILGCVKEITDWGLIIELPNFLSASVHITEISD 497 (1026)
Q Consensus 466 -----------~~~~~~~~~~W~~~~~lP~~~~g~~~~~~~~d 497 (1026)
...|-.+.+.|+.+.+||..+..-+.++....
T Consensus 309 ~AH~Gl~K~w~~~Vy~~d~g~Wk~~GeLp~~l~YG~s~~~nn~ 351 (381)
T COG3055 309 YAHEGLSKSWNSEVYIFDNGSWKIVGELPQGLAYGVSLSYNNK 351 (381)
T ss_pred ccccchhhhhhceEEEEcCCceeeecccCCCccceEEEecCCc
Confidence 01122247889999999997754455444444
No 81
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.18 E-value=5.8e-11 Score=99.26 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=60.2
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELL 1013 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~ 1013 (1026)
|++|.|+|.++.++|+||+++++++|++|.+++++..+.+|.+.|++||.|+|+|+++|+++.+
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~ 64 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGN 64 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCe
Confidence 8999999999999999999998999999999999999999999999999999999999975433
No 82
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.16 E-value=1e-10 Score=100.08 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=62.0
Q ss_pred CCCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
++|+++.|+|++++++|+||+|.+ +++|++|.+++++++..++.+.|++||.|+|+|+++|+++.++.
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ 69 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRIS 69 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEE
Confidence 359999999999999999999986 89999999999998888899999999999999999998655543
No 83
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=99.16 E-value=8.6e-11 Score=97.86 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=60.8
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|+++.|+|++++++|+||++.++++|++|.+++++..+.++.+.|++||.|+|+|+++|+++.++
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i 65 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRI 65 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEE
Confidence 78999999999999999999999999999999999888899999999999999999999866554
No 84
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.15 E-value=1.1e-10 Score=97.39 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=59.1
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcc--cccCcccccccCCEEEEEEEEEeCCee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQA--TRTLVYTRFVIDTVIVCQILKYEDGEL 1012 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~--~~~~~~~~~~~G~~V~~~Vl~vd~~~~ 1012 (1026)
|++|.|+|+++.++|++|+++++++|++|.+++++. ...+|.+.|++||.|+|+|+++|+.+.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 899999999999999999999999999999999987 488899999999999999999998654
No 85
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=99.13 E-value=2.2e-10 Score=98.15 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=59.8
Q ss_pred CcEEEEEEEEEecceEEEEeC---CCceeeEeccccCcccc-cCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFD---GDISGVFPTSAMSQATR-TLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~---~~i~Gl~~~~~ls~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
|+++.|+|+++++||+||+++ ++++||+|.+++++.+. .++.+.|++||.|+|+|+++|..++.|+
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd~~~i~~s 70 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQNGKISLS 70 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEeCCEEEEE
Confidence 789999999999999999998 47999999999999875 8999999999999999999995555555
No 86
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.12 E-value=2e-10 Score=95.96 Aligned_cols=66 Identities=24% Similarity=0.345 Sum_probs=60.7
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC-Ceeeec
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED-GELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~ 1015 (1026)
|+++.|+|++++++|+||+++++++||+|.+++++.++.++.+.|++||.|+++|+++|+ .++.||
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~~~~i~ls 67 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDARGRISLS 67 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECCCCcEEEE
Confidence 789999999999999999999999999999999998888999999999999999999998 344444
No 87
>PF13964 Kelch_6: Kelch motif
Probab=99.11 E-value=1.6e-10 Score=89.19 Aligned_cols=49 Identities=37% Similarity=0.672 Sum_probs=46.0
Q ss_pred CcceeEEEEECCEEEEEeccCC-CCCCCEEEEEECCCCcEEEccCCCCCc
Q psy9769 397 RRSTLGVAVLNSLIYAVGGFDG-SSGLNSAEVYDPSTEKWNMIAPMSTRR 445 (1026)
Q Consensus 397 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p~~r 445 (1026)
||..|++++++++||++||..+ ...++++++||+++++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999987 566899999999999999999999987
No 88
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.10 E-value=2.2e-10 Score=94.72 Aligned_cols=63 Identities=17% Similarity=0.315 Sum_probs=56.2
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
|++++|+|+++.++|++|+| +|++||+|.+++++...+++.+ .+||.++|+|+++|+++.++.
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~ 63 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIV 63 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEE
Confidence 78999999999999999999 8999999999999887777765 499999999999998655543
No 89
>PRK08059 general stress protein 13; Validated
Probab=99.09 E-value=2.1e-10 Score=106.74 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=64.1
Q ss_pred ccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 945 KHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 945 ~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
++.++|+++.|+|+++.++|+||++.++++|++|.+++++.++.++.+.|++||+|+|+|+++|+++..+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i 72 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKI 72 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeE
Confidence 4457899999999999999999999999999999999999888899999999999999999999855444
No 90
>PRK05807 hypothetical protein; Provisional
Probab=99.09 E-value=2.1e-10 Score=108.07 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC-Ceeeec
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED-GELLLT 1015 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~ 1015 (1026)
.++|++|.|+|+.|+++|+||++ ++..||||.+++++.++.++.+.|++||+|+|+|+++|+ .++.||
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~~gkI~LS 71 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDDNGKISLS 71 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECCCCcEEEE
Confidence 36799999999999999999999 689999999999999999999999999999999999997 344444
No 91
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.07 E-value=4.3e-10 Score=93.61 Aligned_cols=66 Identities=18% Similarity=0.228 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+|+++.|+|.++.++|+||++. +++|++|.+++++.++.++.+.|++||.|+|+|+++|+++..+.
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ 66 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRIS 66 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEe
Confidence 4899999999999999999996 79999999999998888899999999999999999998765543
No 92
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=99.05 E-value=5e-10 Score=97.07 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCCcEEEEEEEEEecc--eEEEEeCCCceeeEeccccCc---ccccCcccccccCCEEEEEEEEEeC
Q psy9769 948 KPGRLVWGVLKEKMPG--GVRVEFDGDISGVFPTSAMSQ---ATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~--G~fV~~~~~i~Gl~~~~~ls~---~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
.+|+++.|+|++|.++ |+||++.++.+||+|.++++| .++.++.+.|++||+|.|+|++..-
T Consensus 6 ~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~ 72 (88)
T cd04453 6 IVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPI 72 (88)
T ss_pred CCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecC
Confidence 5699999999999997 999999999999999999999 6788899999999999999999643
No 93
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=99.03 E-value=6.2e-10 Score=92.60 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=57.7
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
|+++.|+|+++.++|+||+++++++|++|.+++++.++.++.+.|++||.|+++|+++|+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~ 60 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD 60 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC
Confidence 789999999999999999999999999999999998888888999999999999999997
No 94
>PHA02945 interferon resistance protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=89.73 Aligned_cols=66 Identities=6% Similarity=0.115 Sum_probs=59.1
Q ss_pred CCCcEEEEEEEEEecceEEEEeCC--CceeeEecccc--CcccccCcccccccCCEEEEEEEEEeCCeeeech
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDG--DISGVFPTSAM--SQATRTLVYTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~--~i~Gl~~~~~l--s~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
.+|+++.|+|+. .+||+||.|++ |++||+|.|++ +...+.+ .+++ +||+|.||||+||+.+..+-.
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDl 79 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDV 79 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEe
Confidence 449999999999 99999999964 99999999965 8888888 8888 999999999999999877644
No 95
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.98 E-value=1.1e-09 Score=95.76 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCc----ccccCcccccccCCEEEEEEEEEeCC-eeeechhh
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ----ATRTLVYTRFVIDTVIVCQILKYEDG-ELLLTEAD 1018 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~----~~~~~~~~~~~~G~~V~~~Vl~vd~~-~~~~~~~~ 1018 (1026)
++|++|.|+|+++.++|++|++.++++|++|.+++++ ....++.+.|++||.|+|+|+++|++ .+.||--.
T Consensus 5 ~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~~~i~LS~~~ 80 (86)
T cd05789 5 EVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSDGSVSLHTRS 80 (86)
T ss_pred CCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCCCCEEEEeCc
Confidence 4699999999999999999999999999999999985 44566778899999999999999984 66676433
No 96
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.98 E-value=2.1e-09 Score=90.58 Aligned_cols=65 Identities=18% Similarity=0.278 Sum_probs=60.1
Q ss_pred CCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeee
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELL 1013 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~ 1013 (1026)
+|+++.|+|++++++|+||+++++++|++|.+++++....++.+.|++||.|+|+|+++|+++..
T Consensus 2 ~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~ 66 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGR 66 (72)
T ss_pred CCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCE
Confidence 59999999999999999999998999999999999987778888999999999999999985433
No 97
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.95 E-value=1.2e-09 Score=127.72 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=59.4
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccC---c-ccccCcccccccCCEEEEEEEEEeC
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMS---Q-ATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls---~-~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
.++|+++.|+|++|++||+||+|.+|++||+|.|+|+ | .++.++.+.|++||+|+++|++||+
T Consensus 645 ~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~ 711 (719)
T TIGR02696 645 PEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD 711 (719)
T ss_pred CCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC
Confidence 4669999999999999999999999999999999996 4 7899999999999999999999996
No 98
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.92 E-value=1e-09 Score=91.72 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=65.6
Q ss_pred cccCCceEEeeeecccCCcceeeccccceeeccCcccccchhhhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 644 NLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAYNAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 644 ~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
+|++|+.++|+|+++.++|++++++.+++.||+|.+++++. ..+++||.+ .|+|+.+|++++++.||+++.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~--~~~~~Gq~v--~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF--SKLKVGQLL--LCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc--cccCCCCEE--EEEEEEEECCCCEEEEEEeec
Confidence 47889999999999999999999954589999999999876 789999999 999999999999999999974
No 99
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.92 E-value=3.8e-09 Score=91.78 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=56.8
Q ss_pred CCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCccccc-----------CcccccccCCEEEEEEEEEeCCeeee
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATRT-----------LVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~~-----------~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
+|+++.|+|++++++|+||++++ +++|++|.++++++... ++.+.|++||+|+++|+++|+++.++
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i 78 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKI 78 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEE
Confidence 38999999999999999999998 89999999999875321 34578999999999999999865444
No 100
>PF13964 Kelch_6: Kelch motif
Probab=98.92 E-value=2.1e-09 Score=82.92 Aligned_cols=44 Identities=36% Similarity=0.780 Sum_probs=41.0
Q ss_pred cccceeeEEECCEEEEEeccCC------CeEEEeCCCCeEEeCCCCcCCc
Q psy9769 355 RRCRAGLVFLHEKVYAVGGFNG------SLRVYDPSTNEWSSAPPMEARR 398 (1026)
Q Consensus 355 ~r~~~~~~~~~~~iyv~GG~~~------~~~~yd~~~~~W~~~~~~p~~r 398 (1026)
||.+|++++++++|||+||..+ ++++||+.+++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999864 6899999999999999999987
No 101
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.92 E-value=2.9e-09 Score=91.92 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=66.6
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC-Ceeeechhhhhh
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED-GELLLTEADEKL 1021 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~~~~~~~ 1021 (1026)
++|++|.|+|+++.+.|++|.+....+|++|.++++....+++.+.|++||.|+|+|+++|+ ..+.||-..++|
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~~~i~LS~~~~~~ 79 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDDMNVLLTTADNEL 79 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCCCCEEEEECCCCC
Confidence 45999999999999999999999999999999999987778888999999999999999998 577887665554
No 102
>KOG2437|consensus
Probab=98.88 E-value=7.3e-10 Score=118.99 Aligned_cols=151 Identities=18% Similarity=0.282 Sum_probs=119.0
Q ss_pred CcEEEEEcCCCC-CCCcEEEEEECCCCcEEEcC---CCCccccceeeEEECC--EEEEEeccC-----------CCeEEE
Q psy9769 319 PKVMLVVGGQAP-KAIRSVECYDFKTERWQSVA---EMPTRRCRAGLVFLHE--KVYAVGGFN-----------GSLRVY 381 (1026)
Q Consensus 319 ~~~i~v~GG~~~-~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~--~iyv~GG~~-----------~~~~~y 381 (1026)
.+.+|+.||+++ ..+.++|.|+...+.|+.+. ..|..|..|.++..-. ++|+.|-+- .++|+|
T Consensus 272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~F 351 (723)
T KOG2437|consen 272 TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRF 351 (723)
T ss_pred CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEE
Confidence 358999999985 56889999999999999863 4788999999998876 999999763 278999
Q ss_pred eCCCCeEEeCC------CCcCCcceeEEEEECCE--EEEEeccC--CC-CCCCEEEEEECCCCcEEEccCC---------
Q psy9769 382 DPSTNEWSSAP------PMEARRSTLGVAVLNSL--IYAVGGFD--GS-SGLNSAEVYDPSTEKWNMIAPM--------- 441 (1026)
Q Consensus 382 d~~~~~W~~~~------~~p~~r~~~~~~~~~~~--iyv~GG~~--~~-~~~~~v~~yd~~~~~W~~~~~~--------- 441 (1026)
|..++.|..+. .-|..-+.|.+++.+++ |||+||.. .+ .....++.||.....|..+..-
T Consensus 352 Di~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE 431 (723)
T KOG2437|consen 352 DIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVE 431 (723)
T ss_pred ecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchh
Confidence 99999998764 34667788999999877 99999963 22 3367899999999999876521
Q ss_pred -CCCcceeEEEEE--CCEEEEEeCCCceeeE
Q psy9769 442 -STRRSSVGVGVL--NGCLYAENLDGRILGC 469 (1026)
Q Consensus 442 -p~~r~~~~~~~~--~~~lyv~GG~~~~~~~ 469 (1026)
...|.+|++-.+ ++.+|++||.+...++
T Consensus 432 ~~~sR~ghcmE~~~~n~~ly~fggq~s~~El 462 (723)
T KOG2437|consen 432 DIQSRIGHCMEFHSKNRCLYVFGGQRSKTEL 462 (723)
T ss_pred HHHHHHHHHHHhcCCCCeEEeccCcccceEE
Confidence 235667776555 6789999997654443
No 103
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.87 E-value=2.3e-09 Score=128.10 Aligned_cols=69 Identities=22% Similarity=0.253 Sum_probs=62.8
Q ss_pred CCCCcEEE-EEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC-Ceeeec
Q psy9769 947 TKPGRLVW-GVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED-GELLLT 1015 (1026)
Q Consensus 947 ~~~G~~v~-G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~ 1015 (1026)
.++|+++. |+|++|++||+||++.+|++||||.|+|+|+++.++++.|++||.|+++|++||+ .++.|+
T Consensus 751 ~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~~grI~LS 821 (891)
T PLN00207 751 PTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVNDKGQLRLS 821 (891)
T ss_pred cCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECCCCcEEEE
Confidence 46799995 6999999999999999999999999999999999999999999999999999997 344454
No 104
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.87 E-value=1e-08 Score=86.99 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=57.1
Q ss_pred CCCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 940 PLTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 940 ~~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|...+.+.+.|+++.|+|++++++|+||++.++++||+|.+++. +.|++||+++++|.++ .++.++
T Consensus 7 ~~~~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i 72 (77)
T cd04473 7 PACTMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNI 72 (77)
T ss_pred cccchhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcE
Confidence 45567777899999999999999999999999999999999872 4599999999999999 544443
No 105
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.86 E-value=5.5e-09 Score=85.93 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=57.7
Q ss_pred EEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 953 VWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 953 v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+.|+|+++.++|+||+++++++|++|.+++++....++.+.|++||.|+|+|+++|+++..+.
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ 63 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRIS 63 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEe
Confidence 479999999999999999999999999999998878888999999999999999998766554
No 106
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.84 E-value=4.5e-09 Score=110.25 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=61.7
Q ss_pred CCCcEEEEEEEEEecceEEEEeCC--CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDG--DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~--~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
.+|++|.|+|++|.++|+||++.+ |++||+|.+++++..+.++.+.|++||.|+|+|+++|+++..+
T Consensus 7 ~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I 75 (262)
T PRK03987 7 EEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHI 75 (262)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeE
Confidence 349999999999999999999975 8999999999999999999999999999999999999865443
No 107
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.84 E-value=3.2e-09 Score=80.85 Aligned_cols=46 Identities=43% Similarity=0.842 Sum_probs=42.3
Q ss_pred CcceeEEEEECCEEEEEeccCC-CCCCCEEEEEECCCCcEEEccCCC
Q psy9769 397 RRSTLGVAVLNSLIYAVGGFDG-SSGLNSAEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 397 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p 442 (1026)
||++|++++++++||++||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999988 666899999999999999999987
No 108
>KOG2437|consensus
Probab=98.83 E-value=3.2e-09 Score=114.23 Aligned_cols=130 Identities=19% Similarity=0.261 Sum_probs=104.3
Q ss_pred CCccccceeeEEECC--EEEEEeccCC-----CeEEEeCCCCeEEeCC---CCcCCcceeEEEEEC--CEEEEEeccCCC
Q psy9769 352 MPTRRCRAGLVFLHE--KVYAVGGFNG-----SLRVYDPSTNEWSSAP---PMEARRSTLGVAVLN--SLIYAVGGFDGS 419 (1026)
Q Consensus 352 ~p~~r~~~~~~~~~~--~iyv~GG~~~-----~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~--~~iyv~GG~~~~ 419 (1026)
-|..|.+|.++...+ .||+.||++| +.|.|+...+.|+.+. ..|-.|.+|-++..- .++|+.|-+-+.
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 367899999999876 9999999997 6899999999998764 478999999998764 499999976332
Q ss_pred C------CCCEEEEEECCCCcEEEcc------CCCCCcceeEEEEECCE--EEEEeCC---------CceeeEEcCcccE
Q psy9769 420 S------GLNSAEVYDPSTEKWNMIA------PMSTRRSSVGVGVLNGC--LYAENLD---------GRILGCVKEITDW 476 (1026)
Q Consensus 420 ~------~~~~v~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--lyv~GG~---------~~~~~~~~~~~~W 476 (1026)
. .-+++|+||..++.|..+. .-|...+.|.+++.+++ +||+||. ++.+.|+.....|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 2 2478999999999999775 34667889999999887 9999993 2455566666677
Q ss_pred EEeec
Q psy9769 477 GLIIE 481 (1026)
Q Consensus 477 ~~~~~ 481 (1026)
...+.
T Consensus 417 ~~l~e 421 (723)
T KOG2437|consen 417 KLLRE 421 (723)
T ss_pred HHHHH
Confidence 66644
No 109
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3.3e-09 Score=106.13 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=62.4
Q ss_pred CcEEEEEEEEEecceEEEEeC--CCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFD--GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~--~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|++|-|+|++|.+||+||.|. +|++||+|.||++...+.+..++.++||.|-|+||+|||++..+
T Consensus 12 GEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~I 78 (269)
T COG1093 12 GEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHI 78 (269)
T ss_pred CcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeE
Confidence 999999999999999999995 59999999999999889999999999999999999999999887
No 110
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.75 E-value=3.3e-08 Score=81.31 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=51.0
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCe
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE 1011 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~ 1011 (1026)
..|++|+|+|.++.++|+||.+. +++|++|+++++ |.+.|++||+|++.|+++|+++
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~ 58 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTS 58 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCC
Confidence 35999999999999999999995 599999999995 4567999999999999999754
No 111
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.71 E-value=1.3e-08 Score=117.70 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=70.7
Q ss_pred CCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 941 LTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 941 ~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+.+++++++|+++.|+|+++.+||+||.++=..+||||+|++|++++.+|.+.+++||.|+++|++||..+.++.
T Consensus 650 v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~ 724 (780)
T COG2183 650 VESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIA 724 (780)
T ss_pred hhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeee
Confidence 556778999999999999999999999999899999999999999999999999999999999999999887764
No 112
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.71 E-value=3.2e-08 Score=119.40 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=63.5
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCC-eeeec
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDG-ELLLT 1015 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~-~~~~~ 1015 (1026)
.++|+++.|+|++|.+||+||++.++++||+|.++++++++.++.+.|++||.|+++|+++|++ ++.||
T Consensus 619 ~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~grI~LS 688 (693)
T PRK11824 619 PEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKRGRIRLS 688 (693)
T ss_pred CcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCCCcEEEE
Confidence 4679999999999999999999999999999999999999999999999999999999999984 34443
No 113
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.71 E-value=2.5e-08 Score=76.35 Aligned_cols=47 Identities=32% Similarity=0.625 Sum_probs=42.8
Q ss_pred CCEEEEEeccC--CCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEE
Q psy9769 407 NSLIYAVGGFD--GSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVL 453 (1026)
Q Consensus 407 ~~~iyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 453 (1026)
+++|||+||.+ +...++++++||+.+++|+.++++|.||++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 556689999999999999999999999999999864
No 114
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.69 E-value=1.5e-08 Score=82.98 Aligned_cols=64 Identities=25% Similarity=0.328 Sum_probs=58.1
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeeeccccceEEee
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
|++|+|+|.++.++|++|++ .+++.||++.+|++..+ .+.|++|+++ +|+|+.+||.++++.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l-~~~v~g~v~~~~l~~~~~~~~~~~~G~~i--~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDF-LSSFTGTVDFLHLDPEKSSKSTYKEGQKV--RARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEE-cCCceEEEEHHHcCCccCcccCcCCCCEE--EEEEEEEeCCCCEEecC
Confidence 78999999999999999999 47899999999987544 5679999999 99999999999999886
No 115
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.68 E-value=1.7e-08 Score=84.60 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=61.4
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccchh-------hhhhcccccccccceeeeeccccceEEee
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY-------NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~-------~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
+++|+.|.|+|.++.++|++|++ ..++.||+|.+++++.+ .+.|++|+.+ +|+|+.+|++++++.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l-~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v--~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRL-SSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLL--TAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEe-CCCCEEEEEHHHccCccccChhhHhcccCCCCEE--EEEEEEEECCCCEEecC
Confidence 47899999999999999999999 37899999999999876 2678999999 99999999999999886
No 116
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.67 E-value=5.5e-08 Score=74.45 Aligned_cols=46 Identities=35% Similarity=0.687 Sum_probs=41.5
Q ss_pred CcceeEEEEECCEEEEEecc---CCCCCCCEEEEEECCCCcEEEccCCC
Q psy9769 397 RRSTLGVAVLNSLIYAVGGF---DGSSGLNSAEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 397 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~~~~W~~~~~~p 442 (1026)
||++|++++++++|||+||+ +.....+++++||+++++|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 44556899999999999999998875
No 117
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.66 E-value=4e-08 Score=99.29 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=65.6
Q ss_pred CCCcEEEEEEEEEecceEEEEeC----------CCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeechh
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFD----------GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTEA 1017 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~----------~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~ 1017 (1026)
++|++|.|+|+++.++|+||++. .+++|++|.+++++..+.++.+.|++||.|+|+|+++| ....||-.
T Consensus 63 ~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~-~~i~LS~k 141 (189)
T PRK09521 63 KKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT-DPLQLSTK 141 (189)
T ss_pred CCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC-CcEEEEEe
Confidence 56999999999999999999995 37899999999999888888999999999999999999 88888866
Q ss_pred hhhh
Q psy9769 1018 DEKL 1021 (1026)
Q Consensus 1018 ~~~~ 1021 (1026)
.++|
T Consensus 142 ~~~l 145 (189)
T PRK09521 142 GKDL 145 (189)
T ss_pred cCCc
Confidence 5544
No 118
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.64 E-value=4.3e-08 Score=117.87 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
.++|+++.|+|++|.+||+||++.++++||+|.|+++++++.++.+.|++||.|+++|+++|+
T Consensus 616 ~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~ 678 (684)
T TIGR03591 616 PEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK 678 (684)
T ss_pred cccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC
Confidence 366999999999999999999999999999999999999999999999999999999999997
No 119
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.60 E-value=4.2e-08 Score=82.12 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=60.4
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccch------hhhhhcccccccccceeeeeccccceEEeech
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTA------YNAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~------~~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|+.|+|+|.++.++|++|.+ ..++.||++.+++++. ..+.|++|+.+ +|+|+.+|++++++.||++
T Consensus 1 G~~V~g~V~~i~~~g~~V~l-~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v--~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTI-SPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQAL--KAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEe-CCCcEEEEEHHHcCCccccccCHHHhCCCCCEE--EEEEEEEeCCCCEEEEEec
Confidence 78899999999999999999 4689999999999864 26779999999 9999999999999999986
No 120
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=98.58 E-value=6.7e-08 Score=81.74 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=64.4
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccch----hhhhhcccccccccceeeeeccccceEEeech
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTA----YNAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~----~~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
+++|++++|+|.++.++|++|++. .++.||+|.++++.. ....|++||++ +|+|+.+|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~-~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v--~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLG-NGIEGFIPISELSDDRIDDPSEVYKIGQTV--RVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEES-TSSEEEEEGGGSSSSEESSSHGTCETTCEE--EEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEEC-CcEEEEEEeehhcCccccccccccCCCCEE--EEEEEEEECCCCeEEEEEC
Confidence 578999999999999999999994 699999999999976 37889999999 9999999999999999986
No 121
>smart00612 Kelch Kelch domain.
Probab=98.58 E-value=7.5e-08 Score=73.25 Aligned_cols=47 Identities=57% Similarity=0.991 Sum_probs=42.7
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECC
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNG 455 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 455 (1026)
+||++||.++....+++++|||.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998776668999999999999999999999999999998875
No 122
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.57 E-value=5.1e-08 Score=74.14 Aligned_cols=41 Identities=44% Similarity=0.953 Sum_probs=37.2
Q ss_pred cccceeeEEECCEEEEEeccCC------CeEEEeCCCCeEEeCCCCc
Q psy9769 355 RRCRAGLVFLHEKVYAVGGFNG------SLRVYDPSTNEWSSAPPME 395 (1026)
Q Consensus 355 ~r~~~~~~~~~~~iyv~GG~~~------~~~~yd~~~~~W~~~~~~p 395 (1026)
||++|++++++++||++||.++ ++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999875 5889999999999999886
No 123
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.56 E-value=5.6e-08 Score=74.60 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=31.2
Q ss_pred CcceeEEEEE-CCEEEEEeccCCC-CCCCEEEEEECCCCcEEEccCCCC
Q psy9769 397 RRSTLGVAVL-NSLIYAVGGFDGS-SGLNSAEVYDPSTEKWNMIAPMST 443 (1026)
Q Consensus 397 ~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~ 443 (1026)
||++|+++.+ +++||++||.+.. ..+++++.||+.+++|+.++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6999999998 5999999999876 478999999999999999988874
No 124
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=7.3e-08 Score=84.73 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=68.4
Q ss_pred cccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhh
Q psy9769 644 NLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEAL 719 (1026)
Q Consensus 644 ~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l 719 (1026)
+++.|.+++|+|+.+.++|++|.+ .+|-+|+++.+++...+ .+.+++||+| +++||.+|. ++++.||+|.+.
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l-~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV--~vKVl~ide-~GKisLSIr~~~ 77 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVEL-EGGKTGLVHISEIADGFVKDIHDHLKVGQEV--KVKVLDIDE-NGKISLSIRKLE 77 (129)
T ss_pred CccccceEEEEEEeeEecceEEEe-cCCCcceEEehHhhhhhHHhHHHHhcCCCEE--EEEEEeecc-CCCcceehHHhh
Confidence 467899999999999999999999 58899999999999887 7889999999 999999999 999999999976
Q ss_pred hh
Q psy9769 720 LE 721 (1026)
Q Consensus 720 ~~ 721 (1026)
.+
T Consensus 78 e~ 79 (129)
T COG1098 78 EE 79 (129)
T ss_pred hC
Confidence 63
No 125
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.6e-07 Score=107.02 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=66.0
Q ss_pred ccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC-Ceeeec
Q psy9769 945 KHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED-GELLLT 1015 (1026)
Q Consensus 945 ~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~ 1015 (1026)
.++.+|+++.|+|+++.+||+||+|.+|=+||+|+|++++.++.+.++.+++||.|++||+++|+ .++.||
T Consensus 615 ~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~dvlk~Gd~v~Vkv~~iD~~Gri~ls 686 (692)
T COG1185 615 REVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEIDKQGRIRLS 686 (692)
T ss_pred hhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccceeecCceEEEEEeeecccCCccce
Confidence 45577999999999999999999999999999999999999999999999999999999999999 566665
No 126
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.48 E-value=3.4e-07 Score=82.08 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=55.6
Q ss_pred cEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccC-----------cccccccCCEEEEEEEEEeCC-------ee
Q psy9769 951 RLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTL-----------VYTRFVIDTVIVCQILKYEDG-------EL 1012 (1026)
Q Consensus 951 ~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~-----------~~~~~~~G~~V~~~Vl~vd~~-------~~ 1012 (1026)
+++.|+|+.+.++|+||++. +++|++|.+++++++... +.+.|++||.|+++|+++|.+ .+
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 47899999999999999997 599999999998865543 357899999999999999974 56
Q ss_pred eechh
Q psy9769 1013 LLTEA 1017 (1026)
Q Consensus 1013 ~~~~~ 1017 (1026)
.||-.
T Consensus 80 ~ls~k 84 (99)
T cd04460 80 GLTMR 84 (99)
T ss_pred EEEEe
Confidence 66643
No 127
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.48 E-value=1.5e-07 Score=83.71 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=65.7
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccchh-----------------------hhhhccccccccccee
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY-----------------------NAKYLTNKRVDLDCSV 701 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~-----------------------~~~~~~G~~~~~~~~I 701 (1026)
|++|++|.|+|+++.+.|+++.+ .+++.||++..++++.+ .+.|++||.+ +|+|
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L-~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V--~~kV 77 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISL-PNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLV--RCKV 77 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEEC-CCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEE--EEEE
Confidence 57899999999999999999999 47899999999998753 3669999999 9999
Q ss_pred eeeccc---cceEEeechhhhh
Q psy9769 702 LYVCPR---HFHVYLSCNEALL 720 (1026)
Q Consensus 702 l~vd~~---~~~v~lS~k~~l~ 720 (1026)
+.+|+. ++++.||+++.++
T Consensus 78 i~~d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 78 VSLDKSKSGKKRIELSLEPELV 99 (100)
T ss_pred EEccCCcCCCcEEEEEecHHHC
Confidence 999998 8999999999754
No 128
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.47 E-value=2.6e-07 Score=70.73 Aligned_cols=46 Identities=20% Similarity=0.469 Sum_probs=41.2
Q ss_pred CcEEEEEcCCC---CCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE
Q psy9769 319 PKVMLVVGGQA---PKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL 364 (1026)
Q Consensus 319 ~~~i~v~GG~~---~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 364 (1026)
++++||+||.+ ...++++++||+.+++|+.++++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 46899999987 45679999999999999999999999999999863
No 129
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.46 E-value=3.7e-07 Score=79.87 Aligned_cols=74 Identities=18% Similarity=0.347 Sum_probs=65.2
Q ss_pred CCCcEEEEEEEEEecceEEEEe--------CCCceeeEeccccCccccc--CcccccccCCEEEEEEEEEeC-Ceeeech
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEF--------DGDISGVFPTSAMSQATRT--LVYTRFVIDTVIVCQILKYED-GELLLTE 1016 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~--------~~~i~Gl~~~~~ls~~~~~--~~~~~~~~G~~V~~~Vl~vd~-~~~~~~~ 1016 (1026)
++|++|.|.|++++...+.|++ .....|++|.+++...... ++.+.|++||.|+|||+++++ ....||-
T Consensus 5 ~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~~~~~~Lst 84 (92)
T cd05791 5 KVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGDASSYYLST 84 (92)
T ss_pred CCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCCCCCcEEEe
Confidence 4599999999999999999999 7788999999999876655 678999999999999999986 7788887
Q ss_pred hhhhh
Q psy9769 1017 ADEKL 1021 (1026)
Q Consensus 1017 ~~~~~ 1021 (1026)
+++.|
T Consensus 85 ~~~~l 89 (92)
T cd05791 85 AENEL 89 (92)
T ss_pred cCCCC
Confidence 76654
No 130
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.45 E-value=1.9e-07 Score=77.60 Aligned_cols=65 Identities=26% Similarity=0.411 Sum_probs=59.2
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeec
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
|+.++|+|+++.++|++|++. +++.||++.+++++.+ .+.|++|+++ +++|+.+|++++++.||+
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~-~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i--~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLS-DHIKGLVPPMHLADVRLKHPEKKFKPGLKV--KCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEec-CCcEEEEEHHHCCCccccCHHHcCCCCCEE--EEEEEEEECCCCEEEEEC
Confidence 788999999999999999994 6799999999998754 4679999999 999999999999999985
No 131
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.43 E-value=2.3e-07 Score=80.22 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=66.0
Q ss_pred cccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeec
Q psy9769 640 VSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 640 ~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
..++++++|+++.|+|.++.++|++|++. ++..||+|.+++++.+ .+.|.+||++ +++|+.+|++++++.||+
T Consensus 7 ~~~~~~~~G~i~~g~V~~v~~~G~fv~l~-~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v--~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 7 TNFSDLKPGMVVHGYVRNITPYGVFVEFL-GGLTGLAPKSYISDEFVTDPSFGFKKGQSV--TAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred hhHHhCCCCCEEEEEEEEEeeceEEEEcC-CCCEEEEEHHHCCcccccCHHHhcCCCCEE--EEEEEEEcCCCCEEEEeC
Confidence 35677899999999999999999999994 7899999999998765 5679999999 999999999999999985
No 132
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.43 E-value=2.3e-07 Score=76.63 Aligned_cols=65 Identities=12% Similarity=0.212 Sum_probs=58.1
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh--hhhhcccccccccceeeeeccccceEEeech
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|++++|+|+++.++|++|++ +++.||+|.+++++.+ +....+|+.+ +|+|+.+|++++++.||++
T Consensus 1 G~iv~g~V~~v~~~G~~v~l--~g~~gfip~s~~~~~~~~~~~~~vG~~i--~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI--EGVRAFLPASQVDLRPVEDLDEYVGKEL--KFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE--CCEEEEEEHHHCCCcccCChHHhCCCEE--EEEEEEEeCCCCEEEEEcC
Confidence 67899999999999999999 6899999999998766 2334599999 9999999999999999985
No 133
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.42 E-value=2.6e-07 Score=77.11 Aligned_cols=66 Identities=24% Similarity=0.464 Sum_probs=60.0
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|+.++|+|.++.++|++|++ .+++.||+|.++++..+ .+.|++||++ +++|+.+|+.++++.||++
T Consensus 1 g~~~~g~V~~v~~~G~~V~l-~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i--~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSF-YNNVKGFLPKSELSEAFIKDPEEHFRVGQVV--KVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEE-CCCCEEEEEHHHcChhhcCCHHHcccCCCEE--EEEEEEEcCCCCEEEEEeC
Confidence 78899999999999999999 46799999999998654 5569999999 9999999999999999975
No 134
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.40 E-value=5.7e-07 Score=93.82 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=65.3
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccc----cCcccccccCCEEEEEEEEEeCC-eeeechhhhhh
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATR----TLVYTRFVIDTVIVCQILKYEDG-ELLLTEADEKL 1021 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~----~~~~~~~~~G~~V~~~Vl~vd~~-~~~~~~~~~~~ 1021 (1026)
++|++|.|+|+++.++|+||.+....+|++|.+++++.++ .++.+.|++||.|+|+|+++|++ +..||-.++.|
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~~~~~LS~k~~~l 140 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRTRDVVLTLKGKGL 140 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCCCcEEEEEcCCCC
Confidence 4599999999999999999999989999999999999776 77888999999999999999875 46777555544
No 135
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.39 E-value=3.1e-07 Score=76.51 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=58.1
Q ss_pred CceEE-eeeecc-cCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeec
Q psy9769 648 GMKVI-ANICQQ-LPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 648 G~~v~-~~V~~v-~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
|.+++ |+|.++ .++|++|++. .++.||++.+++++.. .+.|++|+++ +|+|+.+|+.++++.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~-~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v--~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELK-DGLLGFVHISHLSDDKVPSDTGPFKAGTTH--KARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeC-CCCEEEEEHHHCCcchhcCcccccCCCCEE--EEEEEEEeCCCCEEEEeC
Confidence 66788 999998 5999999994 6899999999998765 4569999999 999999999999999985
No 136
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.38 E-value=6.5e-07 Score=68.52 Aligned_cols=41 Identities=37% Similarity=0.756 Sum_probs=37.1
Q ss_pred cccceeeEEECCEEEEEecc---C-----CCeEEEeCCCCeEEeCCCCc
Q psy9769 355 RRCRAGLVFLHEKVYAVGGF---N-----GSLRVYDPSTNEWSSAPPME 395 (1026)
Q Consensus 355 ~r~~~~~~~~~~~iyv~GG~---~-----~~~~~yd~~~~~W~~~~~~p 395 (1026)
||++|++++++++|||+||+ + +++++||+.+++|+.+++||
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 2 26899999999999999875
No 137
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.37 E-value=4.4e-07 Score=76.43 Aligned_cols=69 Identities=17% Similarity=0.048 Sum_probs=62.2
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|++|+.+.|+|+++.++|++|++. .++.||++.+++++.+ .+.|++||.+ +|+|+.+|+.++++.||++
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~-~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v--~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLG-NKVTGPSFITDALDDYSEALPYKFKKNDIV--RACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeC-CCcEEEEEhhhccCccccccccccCCCCEE--EEEEEEEeCCCCEEEEEEC
Confidence 468999999999999999999994 6899999999998765 4569999999 9999999999999999974
No 138
>smart00612 Kelch Kelch domain.
Probab=98.34 E-value=6.6e-07 Score=67.97 Aligned_cols=46 Identities=35% Similarity=0.675 Sum_probs=41.0
Q ss_pred EEEEEcCCCC-CCCcEEEEEECCCCcEEEcCCCCccccceeeEEECC
Q psy9769 321 VMLVVGGQAP-KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE 366 (1026)
Q Consensus 321 ~i~v~GG~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 366 (1026)
+||++||.+. ..++++++||+.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 3899999864 567899999999999999999999999999998875
No 139
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.32 E-value=5.4e-07 Score=74.64 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=58.2
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEee
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
|+.+.|+|+++.++|++|++ ..++.||+|.+++++.+ .+.|++||.+ +|+|+.+|+.++++.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l-~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v--~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTL-GRGVDARVRVSELSDSYLKDWKKRFKVGQLV--KGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEe-CCCCEEEEEHHHCCchhhcCHhhccCCCCEE--EEEEEEEeCCCCEEecC
Confidence 67899999999999999999 46799999999998765 4569999999 99999999999999886
No 140
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.32 E-value=6.9e-07 Score=68.50 Aligned_cols=42 Identities=29% Similarity=0.604 Sum_probs=29.1
Q ss_pred cccceeeEEE-CCEEEEEeccCC------CeEEEeCCCCeEEeCCCCcC
Q psy9769 355 RRCRAGLVFL-HEKVYAVGGFNG------SLRVYDPSTNEWSSAPPMEA 396 (1026)
Q Consensus 355 ~r~~~~~~~~-~~~iyv~GG~~~------~~~~yd~~~~~W~~~~~~p~ 396 (1026)
||++|+++.+ ++.||++||.+. ++++||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999998 589999999763 78999999999999988873
No 141
>KOG1067|consensus
Probab=98.30 E-value=6e-07 Score=98.35 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=64.5
Q ss_pred cccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCee
Q psy9769 944 VKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGEL 1012 (1026)
Q Consensus 944 ~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~ 1012 (1026)
..|++.|-+++++|+.+.|+|+||+|+++..||+|.+||+.+.+.+|++.+++||.+.++-++.|+...
T Consensus 663 ~~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~ 731 (760)
T KOG1067|consen 663 VQDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGG 731 (760)
T ss_pred ccceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccc
Confidence 345577999999999999999999999999999999999999999999999999999999999999653
No 142
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.27 E-value=6e-07 Score=102.12 Aligned_cols=101 Identities=16% Similarity=0.291 Sum_probs=75.4
Q ss_pred cccccCcEEee-------cCeEEEehhh-hhcccC---CCCccccCC--CCcEEEEEEEEEecceEEEEeCCCceeeEec
Q psy9769 913 ADIKVGDEVQA-------KNSIEVAFKS-LYRIAQ---PLTSVKHTK--PGRLVWGVLKEKMPGGVRVEFDGDISGVFPT 979 (1026)
Q Consensus 913 ~~~kvG~~v~~-------~~~i~ls~K~-l~~~~~---~~~~~~~~~--~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~ 979 (1026)
..+++|+.++. .+....+.|+ ++..-. .-.-|.+.+ .|++|+|+|+++.++|+||.+ ++++||+|+
T Consensus 85 ~~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~ 163 (470)
T PRK09202 85 PDAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL-GRAEAILPR 163 (470)
T ss_pred ccccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE-CCeEEEecH
Confidence 45789999873 4444555666 322111 011233445 699999999999999999999 689999999
Q ss_pred cccCcccccCcccccccCCEEEEEEEEEeCC----eeeechhhhh
Q psy9769 980 SAMSQATRTLVYTRFVIDTVIVCQILKYEDG----ELLLTEADEK 1020 (1026)
Q Consensus 980 ~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~----~~~~~~~~~~ 1020 (1026)
+++ .|.+.|++||.|+|+|++||+. .+.||-...+
T Consensus 164 sE~------ip~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~p~ 202 (470)
T PRK09202 164 KEQ------IPRENFRPGDRVRAYVYEVRKEARGPQIILSRTHPE 202 (470)
T ss_pred HHc------CCCccCCCCCEEEEEEEEEecCCCCCeEEEEeCcHH
Confidence 999 4889999999999999999986 5567644443
No 143
>PHA02945 interferon resistance protein; Provisional
Probab=98.25 E-value=1e-06 Score=72.99 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=61.4
Q ss_pred cCCceEEeeeecccCCcceeecc-ccceeeccCcccc--cchh--hhhhcccccccccceeeeeccccceEEeechh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLK-NTQFKAFISPEAM--STAY--NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNE 717 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~-~~~~~gfi~~~~~--~~~~--~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~ 717 (1026)
.+|++|.|+|.. .++|++|.+. ++|..||++.++. +..| ...+.+||++ -|+||.+|+.++.|-||+|.
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~rd~l~Gqkv--V~KVirVd~~kg~IDlSlK~ 83 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKYRDKLVGKTV--KVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEeeeeEecCCEE--EEEEEEECCCCCEEEeEeeE
Confidence 689999999999 9999999998 7799999999955 7666 3344499999 99999999999999999997
No 144
>KOG0783|consensus
Probab=98.23 E-value=1.9e-06 Score=98.39 Aligned_cols=105 Identities=16% Similarity=0.291 Sum_probs=75.4
Q ss_pred HHHHHHHHHhc----CCCccEEEEECCEEEEEEhhhhhccChhhHhhhc-CCc--cCc----------ccEEEecCCCHH
Q psy9769 52 AFETMNIMRKQ----NLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFE--ESK----------QERIVLKGVDPN 114 (1026)
Q Consensus 52 l~~~l~~l~~~----~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~--e~~----------~~~i~l~~~~~~ 114 (1026)
+...+..|+.. ..+.||+|.|++..|+|||+||+++|+||+++|. ..+ +++ ...|.+.+++|.
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p~ 620 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPPL 620 (1267)
T ss_pred chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCHH
Confidence 34455555543 4567899999999999999999999999999997 222 211 124557789999
Q ss_pred HHHHHhhheeccee--eec-------------------hhhHHHHHHHHHhcCchhHHhHHHH
Q psy9769 115 ALKLLIDYVYSCEI--YVT-------------------EENVQMLLPAANLLQLTDVRDACCD 156 (1026)
Q Consensus 115 ~f~~~l~~~Ytg~~--~i~-------------------~~~v~~ll~~A~~l~l~~L~~~c~~ 156 (1026)
.|+.+|+||||... +.. +..|..|...+.+|++.+|......
T Consensus 621 mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~~s 683 (1267)
T KOG0783|consen 621 MFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFSVS 683 (1267)
T ss_pred HHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhhhh
Confidence 99999999999842 101 1234557777778877777765544
No 145
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=98.22 E-value=7.7e-05 Score=75.73 Aligned_cols=130 Identities=11% Similarity=0.044 Sum_probs=96.3
Q ss_pred eeEeeCceeeeeEeEEE-EeeeEEEeccceeeeecccceeeC-CccccccCcEEe------ecCeEEEehhh--hhcccC
Q psy9769 870 AEVNLGDEVSCVVKGIS-VRGVIAQVGYYKLKATCENEYVEG-NKADIKVGDEVQ------AKNSIEVAFKS--LYRIAQ 939 (1026)
Q Consensus 870 ~~~~~G~~~~g~v~~i~-~~g~~v~l~~~~~~~~~~~~~~~~-~~~~~kvG~~v~------~~~~i~ls~K~--l~~~~~ 939 (1026)
+.+..|.-+-++|+.+. +.|+|+..+= .-+.++|.+-.+. ..-..++||.+- .+.||.-+++. .+.+ .
T Consensus 69 p~~tvg~~g~~~Vv~v~~~lGaFlD~Gl-~KDl~vp~~elp~~~~~wpq~Gd~l~v~l~~Dkk~Ri~g~~a~~~~l~~-l 146 (287)
T COG2996 69 PKATVGEYGWLKVVEVNKDLGAFLDWGL-PKDLLVPLDELPTLKSLWPQKGDKLLVYLYVDKKGRIWGTLAIEKILEN-L 146 (287)
T ss_pred ceEeecceeEEEEEEEcCCcceEEecCC-CcceeeehhhcccccccCCCCCCEEEEEEEEccCCcEEEEecchhHHHh-c
Confidence 45667888899999998 7899999874 3556666633222 223478888865 37788888766 2221 1
Q ss_pred CCCccccCCC---CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 940 PLTSVKHTKP---GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 940 ~~~~~~~~~~---G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
+ ..++. ++.|+|+|-++.+-|.||=.+++.-||||+||.-. ....||+++++|+.+.+ ..+|
T Consensus 147 ~----~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~--------~prlG~~l~~rVi~~re-Dg~l 211 (287)
T COG2996 147 A----TPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFA--------EPRLGERLTARVIGVRE-DGKL 211 (287)
T ss_pred C----CccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhcc--------cccCCceEEEEEEEEcc-CCee
Confidence 1 22233 99999999999999999999999999999998733 24699999999999988 4444
No 146
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.22 E-value=1.4e-06 Score=72.79 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=59.8
Q ss_pred ccCCceEEeeeecccC-CcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 645 LVPGMKVIANICQQLP-HGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~-~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|++|+.+.|+|.++.+ .|+++++ ..+..|+++.+++++.+ .+.|++||.+ +|+|+++|. +++.||++
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l-~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v--~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQL-PFGKTGLVSIFHLSDSYTENPLEGFKPGKIV--RCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEEC-CCCCEEEEEHHHhcCcccCCHHHhCCCCCEE--EEEEEEecC--CEEEEEeC
Confidence 4689999999999986 7999999 58899999999998877 4668999999 999999986 88999875
No 147
>PLN02772 guanylate kinase
Probab=98.22 E-value=5.3e-06 Score=91.09 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=67.7
Q ss_pred cCCcceeEEEEECCEEEEEeccCCCC-CCCEEEEEECCCCcEEEcc---CCCCCcceeEEEEE-CCEEEEEeCCCceeeE
Q psy9769 395 EARRSTLGVAVLNSLIYAVGGFDGSS-GLNSAEVYDPSTEKWNMIA---PMSTRRSSVGVGVL-NGCLYAENLDGRILGC 469 (1026)
Q Consensus 395 p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~ 469 (1026)
..++.+++++.+++++||+||.+... ..+.+++||+.+++|.... +.|.||.+|+++++ +++|+|++++...
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--- 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--- 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence 44888999999999999999987765 5789999999999998654 78999999999999 6899999865432
Q ss_pred EcCcccEEEeecCCC
Q psy9769 470 VKEITDWGLIIELPN 484 (1026)
Q Consensus 470 ~~~~~~W~~~~~lP~ 484 (1026)
+.+-|.+-..-|.
T Consensus 99 --~~~~w~l~~~t~~ 111 (398)
T PLN02772 99 --DDSIWFLEVDTPF 111 (398)
T ss_pred --ccceEEEEcCCHH
Confidence 1233655544443
No 148
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=98.16 E-value=3.7e-06 Score=103.14 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=60.7
Q ss_pred ccccCCCCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCcccc-----------cCcccccccCCEEEEEEEEEeCC
Q psy9769 943 SVKHTKPGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATR-----------TLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 943 ~~~~~~~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~-----------~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
.|-+.++|+++.|+|++|++||+||++.+ +++||+|.++|+++.. .+....|++||+|+++|++||..
T Consensus 621 ~yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~ 700 (709)
T TIGR02063 621 EYMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLD 700 (709)
T ss_pred HhhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecc
Confidence 35555779999999999999999999998 8999999999986432 34457899999999999999986
Q ss_pred eeee
Q psy9769 1011 ELLL 1014 (1026)
Q Consensus 1011 ~~~~ 1014 (1026)
+.++
T Consensus 701 ~~~I 704 (709)
T TIGR02063 701 TGKI 704 (709)
T ss_pred cCeE
Confidence 5544
No 149
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=98.16 E-value=1.6e-06 Score=94.59 Aligned_cols=101 Identities=21% Similarity=0.387 Sum_probs=75.5
Q ss_pred cccccCcEEee-------cCeEEEehhh-h---hc-ccCC--CCccccCCCCcEEEEEEEEEecce-EEEEeCCCceeeE
Q psy9769 913 ADIKVGDEVQA-------KNSIEVAFKS-L---YR-IAQP--LTSVKHTKPGRLVWGVLKEKMPGG-VRVEFDGDISGVF 977 (1026)
Q Consensus 913 ~~~kvG~~v~~-------~~~i~ls~K~-l---~~-~~~~--~~~~~~~~~G~~v~G~V~~i~~~G-~fV~~~~~i~Gl~ 977 (1026)
..+++||.++. .+....+.|+ + ++ ..+. +..|.+ +.|++|+|+|.++.+.| ++|.+ ++++|++
T Consensus 82 ~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~L 159 (341)
T TIGR01953 82 PDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGIL 159 (341)
T ss_pred cccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEe
Confidence 56889999873 4445556666 3 11 1111 344433 57999999999999988 79999 6999999
Q ss_pred eccccCcccccCcccccccCCEEEEEEEEEeCCe----eeechhhhhh
Q psy9769 978 PTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE----LLLTEADEKL 1021 (1026)
Q Consensus 978 ~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~----~~~~~~~~~~ 1021 (1026)
|++++. |.+.|++||+|+|.|++|+... +.||-...+|
T Consensus 160 P~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~~~~ 201 (341)
T TIGR01953 160 PKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTHPEF 201 (341)
T ss_pred cHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCcHHH
Confidence 999994 6777999999999999999653 7777555444
No 150
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.14 E-value=2.4e-06 Score=71.30 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=59.9
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|++|+|+|.++.+.|++|++ ..++.|+++.+++++.+ .+.|++|+.+ +|+|+.+|++++++.||++
T Consensus 1 G~iv~g~V~~i~~~~~~v~l-~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i--~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDI-GYKSEGIIPISEFSDDPIENGEDEVKVGDEV--EVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEe-CCCceEEEEHHHhCccccCCHhHcCCCCCEE--EEEEEEEECCCCeEEEEeC
Confidence 78899999999999999999 36799999999998765 5679999999 9999999999999999975
No 151
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=98.12 E-value=8.8e-06 Score=81.52 Aligned_cols=60 Identities=18% Similarity=0.206 Sum_probs=52.1
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCccccc-----------CcccccccCCEEEEEEEEEe
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRT-----------LVYTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~-----------~~~~~~~~G~~V~~~Vl~vd 1008 (1026)
.+|+++.|+|++++++|+||++ +.++|++|.+++.++... +....|++||+|++||+++|
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~l-g~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 150 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSL-GPFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALS 150 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEe-CCceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEE
Confidence 3499999999999999999999 569999999999865432 23468999999999999998
No 152
>KOG0511|consensus
Probab=98.11 E-value=2.3e-06 Score=89.45 Aligned_cols=133 Identities=18% Similarity=0.134 Sum_probs=108.1
Q ss_pred EEEEEEhhhhhccChhhHhhhc-CCccCccc----EEEecCCCHHHHHHHhhheecceeeechhhHHHHHHHHHhcCch-
Q psy9769 75 VEVAAHKMVLAACSPYFHAMFI-SFEESKQE----RIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLT- 148 (1026)
Q Consensus 75 ~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~----~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~~ll~~A~~l~l~- 148 (1026)
.++|||+.+++ |.+||..||. ++.|++.+ ...+++....+.+.+++|+|+.+.++.++-+.+++..|+++.+.
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 45999999998 6889999999 89886522 34566777889999999999999999999999999999999775
Q ss_pred -h-HHhHHHHhhhcc---cCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCH
Q psy9769 149 -D-VRDACCDFLQCQ---LHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSH 208 (1026)
Q Consensus 149 -~-L~~~c~~~l~~~---l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~ 208 (1026)
. |+.++..-|.+. ++.-+++.++..+-......|.+.+..+++.|+..++..|++...-.
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~ 444 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLR 444 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Confidence 2 455555555443 34456888888888888999999999999999999998888765433
No 153
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.10 E-value=3e-06 Score=71.41 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=60.8
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechh
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNE 717 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~ 717 (1026)
|+++.|+|.++.++|++|++. .++.||++.++++..+ .+.|++|+.+ +|+|+.+|+.++++.||++.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~-~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v--~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLG-DGVEGFLRAAELSRDRVEDATERFKVGDEV--EAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeC-CCCEEEEEHHHCCCccccCHHHccCCCCEE--EEEEEEEeCCCCEEEEEEEE
Confidence 788999999999999999994 7799999999988754 5668999999 99999999999999999986
No 154
>PRK07252 hypothetical protein; Provisional
Probab=98.09 E-value=3.8e-06 Score=77.29 Aligned_cols=72 Identities=17% Similarity=0.050 Sum_probs=64.5
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhhhh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEALL 720 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~l~ 720 (1026)
.+|..+.|+|.++.++|++|.+ .+++.||++.+++++.+ ...|.+||.+ +|+|+.+|+.++++.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei-~~~~~GllhiseLs~~~~~~~~~~~~vGD~V--~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVAL-ENGTTGLIHISEIKTGFIDNIHQLLKVGEEV--LVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEE-CCCCEEEEEHHHcCCccccChhhccCCCCEE--EEEEEEEeCCCCEEEEEEeeccc
Confidence 5799999999999999999999 46799999999998755 4569999999 99999999999999999998643
No 155
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=98.05 E-value=4.9e-06 Score=70.69 Aligned_cols=70 Identities=14% Similarity=0.054 Sum_probs=61.9
Q ss_pred cCCceEEeeeecccCCcceeeccc-cceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKN-TQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNE 717 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~-~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~ 717 (1026)
++|+.+.|+|.++.++|++|++.. .++.||+|.+++++.+ .+.|++|+.+ +++|+.+|+.++++.||+++
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v--~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKE--VVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEE--EEEEEEEECCCCEEEEEEcC
Confidence 579999999999999999999952 3599999999998765 4568999999 99999999999999999874
No 156
>PF13854 Kelch_5: Kelch motif
Probab=98.05 E-value=8.3e-06 Score=59.87 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=34.7
Q ss_pred CcCCcceeEEEEECCEEEEEeccCC--CCCCCEEEEEECCC
Q psy9769 394 MEARRSTLGVAVLNSLIYAVGGFDG--SSGLNSAEVYDPST 432 (1026)
Q Consensus 394 ~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~~ 432 (1026)
+|.+|++|++++++++||++||.+. ....+++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 5889999999999999999999984 55689999999875
No 157
>PRK11642 exoribonuclease R; Provisional
Probab=98.05 E-value=8.5e-06 Score=99.76 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=60.0
Q ss_pred ccccCCCCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCccc-c----------cCcccccccCCEEEEEEEEEeCC
Q psy9769 943 SVKHTKPGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQAT-R----------TLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 943 ~~~~~~~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~-~----------~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
.|-+.++|+++.|+|++|++||+||++++ +|+||||.++|.++. . .+....|++||.|+++|++||..
T Consensus 637 ~~m~~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~ 716 (813)
T PRK11642 637 DFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMD 716 (813)
T ss_pred hhhhccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecC
Confidence 34455779999999999999999999987 499999999998641 1 23457899999999999999987
Q ss_pred eeee
Q psy9769 1011 ELLL 1014 (1026)
Q Consensus 1011 ~~~~ 1014 (1026)
+..+
T Consensus 717 ~rkI 720 (813)
T PRK11642 717 ERKI 720 (813)
T ss_pred CCeE
Confidence 6665
No 158
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=4.5e-06 Score=84.09 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=67.2
Q ss_pred cCCceEEeeeecccCCcceeecc-ccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLK-NTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~-~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
..|++|-|+|++|.++|++|.+. ++|..||++.++++..| .+..++||++ =|+||.|||++++|-||+|.-
T Consensus 10 eeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkv--V~kVlrVd~~rg~IDLSlkrV 85 (269)
T COG1093 10 EEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKV--VAKVLRVDPKRGHIDLSLKRV 85 (269)
T ss_pred CCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeE--EEEEEEEcCCCCeEeeehhhC
Confidence 46999999999999999999998 88999999999999998 7889999999 999999999999999999974
No 159
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.03 E-value=5.2e-06 Score=70.78 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
+|..+.|+|.++.++|++|++...+..|+++.+++++.+ .+.|++|+.+ +|+|+.+|++++++.+|+++.
T Consensus 2 ~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v--~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 2 VGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKV--RAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEE--EEEEEEEeCCCCEEEEEEEee
Confidence 589999999999999999999433799999999988755 4678999999 999999999999999999873
No 160
>PLN02772 guanylate kinase
Probab=98.01 E-value=2.4e-05 Score=86.02 Aligned_cols=78 Identities=21% Similarity=0.275 Sum_probs=63.5
Q ss_pred CccccceeeEEECCEEEEEeccCC------CeEEEeCCCCeEEeC---CCCcCCcceeEEEEE-CCEEEEEeccCCCCCC
Q psy9769 353 PTRRCRAGLVFLHEKVYAVGGFNG------SLRVYDPSTNEWSSA---PPMEARRSTLGVAVL-NSLIYAVGGFDGSSGL 422 (1026)
Q Consensus 353 p~~r~~~~~~~~~~~iyv~GG~~~------~~~~yd~~~~~W~~~---~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 422 (1026)
+.++..++++.+++++||+||.+. .+++||..|++|... .+.|.||.+|+++++ +++|+|+++-.+..
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 358889999999999999999653 689999999999864 477999999999998 68999998654332
Q ss_pred CEEEEEECCC
Q psy9769 423 NSAEVYDPST 432 (1026)
Q Consensus 423 ~~v~~yd~~~ 432 (1026)
.++|.+...|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 6777776554
No 161
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.99 E-value=1.3e-05 Score=96.92 Aligned_cols=73 Identities=14% Similarity=0.108 Sum_probs=61.7
Q ss_pred ccccCCCCcEEEEEEEEEecceEEEEeC-CCceeeEeccccCccc-----------ccCcccccccCCEEEEEEEEEeCC
Q psy9769 943 SVKHTKPGRLVWGVLKEKMPGGVRVEFD-GDISGVFPTSAMSQAT-----------RTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 943 ~~~~~~~G~~v~G~V~~i~~~G~fV~~~-~~i~Gl~~~~~ls~~~-----------~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
.|-+.++|+++.|+|++|+++|+||+++ .+++||||.++|.++. .++....|++||+|+++|++||..
T Consensus 566 ~yl~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~ 645 (654)
T TIGR00358 566 RYLLDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNME 645 (654)
T ss_pred HhhhhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecc
Confidence 3555577999999999999999999998 6899999999998753 133457899999999999999998
Q ss_pred eeeec
Q psy9769 1011 ELLLT 1015 (1026)
Q Consensus 1011 ~~~~~ 1015 (1026)
+..+.
T Consensus 646 ~~~I~ 650 (654)
T TIGR00358 646 TRSII 650 (654)
T ss_pred cCeEE
Confidence 77664
No 162
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=97.98 E-value=1e-05 Score=66.56 Aligned_cols=59 Identities=10% Similarity=0.232 Sum_probs=51.0
Q ss_pred ccCcccccccccccccceeeeecccceeeeeeccc------cccCceEEEEEeeeeeccceeEEEEe
Q psy9769 563 ETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS------VILGQIVTCMISKIKVAASMSILEVT 623 (1026)
Q Consensus 563 ~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~------~~~G~~v~~~v~~~~~~~~~~~i~ls 623 (1026)
..|.+++|+|.+++++|++|++|. ++||+|.++ +++|+.+++.|.+++...+...+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~--~eg~lp~~e~~~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK--VEAILPKKEQIPGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC--eEEEeeHHHCCCCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 368999999999999999999974 899999755 79999999999999887556666666
No 163
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=97.98 E-value=1.4e-05 Score=76.92 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=52.8
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccc----------cC-cccccccCCEEEEEEEEEeCCee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATR----------TL-VYTRFVIDTVIVCQILKYEDGEL 1012 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~----------~~-~~~~~~~G~~V~~~Vl~vd~~~~ 1012 (1026)
|.+|.|.|+++.+||+||.+. -++||+|.+++.++++ .+ ....|++|+.|+|||+.+.....
T Consensus 82 gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~ 154 (183)
T COG1095 82 GEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSR 154 (183)
T ss_pred ccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccC
Confidence 999999999999999999996 7899999999988632 12 22379999999999999977653
No 164
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=97.95 E-value=6.4e-06 Score=68.49 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=56.6
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccch-h----hhhhcccccccccceeeeeccccceEEee
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTA-Y----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~-~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
|+.+.|+|.++.++|++|++. .++.|+++.+++++. . .+.|++||++ +++|+.+|++++++.|+
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~-~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v--~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLD-GGIDGLVHISDISWTQRVRHPSEIYKKGQEV--EAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeC-CCCEEEEEHHHCCCccccCChhhEECCCCEE--EEEEEEEECCcCEEeCC
Confidence 678999999999999999994 689999999998852 2 4568999999 99999999999999875
No 165
>PRK08582 hypothetical protein; Provisional
Probab=97.95 E-value=8.7e-06 Score=77.13 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=63.5
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
++.|+++.|+|.++.++|++|.+ ..+..|+++.+++++.+ .+.|++|+++ +|+|+.+|+. +++.||+++.
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L-~~~~~GlVhiSels~~~v~~~~~~l~vGD~V--kvkV~~id~~-gkI~LSlk~~ 76 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVEL-PEGKTGLVHISEVADNYVKDINDHLKVGDEV--EVKVLNVEDD-GKIGLSIKKA 76 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEE-CCCCEEEEEeeccCcccccccccccCCCCEE--EEEEEEECCC-CcEEEEEEec
Confidence 57899999999999999999999 47899999999998766 4679999999 9999999985 8999999985
No 166
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.91 E-value=2.3e-05 Score=64.11 Aligned_cols=64 Identities=5% Similarity=0.010 Sum_probs=58.5
Q ss_pred CCcEEEEEEEEEecceEEEEeCC-CceeeEe-ccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDG-DISGVFP-TSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~-~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
+|+++. .|+.+.+.|++|++.+ |++|+|. .++++..++.+..+.+ +|-++.++|+.||+.+.-+
T Consensus 16 v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYI 81 (86)
T PHA02858 16 INEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYI 81 (86)
T ss_pred CCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEE
Confidence 399999 8889999999999976 8999999 9999999998888888 9999999999999987654
No 167
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.90 E-value=1.9e-05 Score=86.68 Aligned_cols=102 Identities=18% Similarity=0.259 Sum_probs=72.7
Q ss_pred cccccCcEEee-------cCeEEEehhh-hhcc---cCCCCccccC--CCCcEEEEEEEEEecceEEEEeCCCceeeEec
Q psy9769 913 ADIKVGDEVQA-------KNSIEVAFKS-LYRI---AQPLTSVKHT--KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPT 979 (1026)
Q Consensus 913 ~~~kvG~~v~~-------~~~i~ls~K~-l~~~---~~~~~~~~~~--~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~ 979 (1026)
...++||.++. .|.-..+.|+ +... ...-.-|++. +.|++++|+|+++.+.|+||.+ ++++|++|+
T Consensus 85 ~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 85 PAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred ccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 34667777652 3444445555 2221 1111134444 5699999999999999999999 569999999
Q ss_pred cccCcccccCcccccccCCEEEEEEEEEeCCe----eeechhhhhh
Q psy9769 980 SAMSQATRTLVYTRFVIDTVIVCQILKYEDGE----LLLTEADEKL 1021 (1026)
Q Consensus 980 ~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~----~~~~~~~~~~ 1021 (1026)
+++ .|.+.|++||.|+|.|++|+.+. +.||-...+|
T Consensus 164 ~E~------ip~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt~p~~ 203 (362)
T PRK12327 164 AEQ------IPGETYKHGDRIKVYVVKVEKTTKGPQIFVSRTHPGL 203 (362)
T ss_pred HHc------CCCCCCCCCCEEEEEEEEEecCCCCCeEEEEeCCHHH
Confidence 888 46788999999999999999655 6676554443
No 168
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=97.88 E-value=1.4e-05 Score=66.98 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
+|+.+.|+|.++.+.|+++.+. .++.||++.++++..+ ...|+.|+.+ +++|+.+|+.++++.+|++
T Consensus 2 ~G~~v~g~V~~v~~~g~~v~i~-~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v--~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 2 VGDVVEGTVTEITPFGAFVDLG-NGVEGLIPISELSDKRVKDPEEVLKVGDEV--KVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCEEEEEEEEEEccEEEEEeC-CCCEEEEEHHHCCccccCCHHHeecCCCEE--EEEEEEEeCCCCEEEEEeC
Confidence 6999999999999999999993 5899999999988763 5669999999 9999999999999999874
No 169
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=97.87 E-value=1.6e-05 Score=66.68 Aligned_cols=67 Identities=12% Similarity=0.020 Sum_probs=57.4
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeec
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
..|..++|+|.++.++|++|++...+..||+|.+++++.+ .+.|++|+++ +++|+.+|+++ ++.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v--~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKV--WVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEE--EEEEEEECCCC-cEEEEe
Confidence 3689999999999999999999211379999999998866 4568999999 99999999987 888886
No 170
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.87 E-value=3.4e-05 Score=78.12 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=53.6
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCccccc-----------CcccccccCCEEEEEEEEEeCC
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRT-----------LVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~-----------~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
.+|+++.|+|+++.++|+||+++ .++|++|.+++.+++.. +....|++||.|++||+++|.+
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~ 152 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLK 152 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcc
Confidence 34999999999999999999996 59999999999875432 3456789999999999999875
No 171
>PRK08059 general stress protein 13; Validated
Probab=97.83 E-value=1.9e-05 Score=73.56 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=65.4
Q ss_pred ccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 643 LNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 643 ~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
+.+++|+.+.|+|.++.++|++|.+ ..+..|+++.+.++..+ ...|++|+.+ +|+|+.+|+.++++.||+++.
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i-~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I--~vkI~~id~~~~~i~lslk~~ 79 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVAL-DEETQGLVHISEITHGFVKDIHDFLSVGDEV--KVKVLSVDEEKGKISLSIRAT 79 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEE-CCCCEEEEEHHHCCcccccCHHHcCCCCCEE--EEEEEEEECCCCeEEEEEEEc
Confidence 4578999999999999999999999 46899999988887655 3568999999 999999999999999999985
No 172
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.82 E-value=0.00014 Score=75.44 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=97.0
Q ss_pred EEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCC---CeEEEeCCC----CeEEeCC-CCcCCcceeEEEEE
Q psy9769 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG---SLRVYDPST----NEWSSAP-PMEARRSTLGVAVL 406 (1026)
Q Consensus 335 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~---~~~~yd~~~----~~W~~~~-~~p~~r~~~~~~~~ 406 (1026)
....||+.+++++.+......-|...+..-+|.+.+.||... .+..|++.+ ..|.+.+ .|..+|.+.++..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 345799999999988644333344444445899999999753 567788875 6798875 59999999988877
Q ss_pred -CCEEEEEeccCCCCCCCEEEEEECCC-----CcEEEccC----CCCCcceeEEEEECCEEEEEeCCCceeeEEcCcccE
Q psy9769 407 -NSLIYAVGGFDGSSGLNSAEVYDPST-----EKWNMIAP----MSTRRSSVGVGVLNGCLYAENLDGRILGCVKEITDW 476 (1026)
Q Consensus 407 -~~~iyv~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~----~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~W 476 (1026)
+|+++|+||... ...|.|.+.. ..|..+.. .+..-+-+....-+|+||+++..+. .-||..++++
T Consensus 127 ~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v 201 (243)
T PF07250_consen 127 PDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTV 201 (243)
T ss_pred CCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeE
Confidence 899999999873 3344444321 12333322 2233333444444999999998643 4456666665
Q ss_pred -EEeecCCCc
Q psy9769 477 -GLIIELPNF 485 (1026)
Q Consensus 477 -~~~~~lP~~ 485 (1026)
..++.+|..
T Consensus 202 ~~~lP~lPg~ 211 (243)
T PF07250_consen 202 VRTLPDLPGG 211 (243)
T ss_pred EeeCCCCCCC
Confidence 777778763
No 173
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.81 E-value=2.4e-05 Score=68.15 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=61.3
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccc----hh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMST----AY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~----~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
.++|+.|.|+|.++.+.|++|.+ ..++.|+++.+++++ .+ .+.+++|+.+ +|+|+.+|+. +++.||++
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i-~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i--~~~V~~~~~~-~~i~LS~~ 79 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDI-NSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLI--VAEVQSVDSD-GSVSLHTR 79 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEEC-CCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEE--EEEEEEECCC-CCEEEEeC
Confidence 36899999999999999999999 468999999998874 11 4569999999 9999999988 89999998
Q ss_pred hh
Q psy9769 717 EA 718 (1026)
Q Consensus 717 ~~ 718 (1026)
+.
T Consensus 80 ~~ 81 (86)
T cd05789 80 SL 81 (86)
T ss_pred cc
Confidence 73
No 174
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=97.80 E-value=2e-05 Score=65.40 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=57.8
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeech
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|+.+.|+|.++.++|++|.+ ..+..||++.+++++.+ .+.|++|+.+ +++|+.+|+ .+++.||++
T Consensus 1 G~~~~g~V~~i~~~g~~v~i-~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v--~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVEL-GGGISGLVHISQIAHKRVKDVKDVLKEGDKV--KVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEE-CCCCEEEEEhHHcCCcccCCHHHccCCCCEE--EEEEEEECC-CCcEEEEEC
Confidence 67899999999999999999 46899999999988655 3568999999 999999999 889999875
No 175
>PRK05807 hypothetical protein; Provisional
Probab=97.80 E-value=2.1e-05 Score=74.28 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=62.8
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
+++|+.|+|+|..+.++|++|.+ .+..|+++.++++..+ .+.|++|+.+ +++|+.+|+ .+++.||+++.
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L--~~~~Glvhiseis~~~v~~~~~~~kvGd~V--~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV--EGKTGLVHISEVADTYVKDIREHLKEQDKV--KVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE--CCEEEEEEhhhcccccccCccccCCCCCEE--EEEEEEECC-CCcEEEEEEec
Confidence 56899999999999999999999 6789999999998766 4668999999 999999999 79999999985
No 176
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=97.78 E-value=2.1e-05 Score=65.11 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=56.6
Q ss_pred CCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEee
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
+|..++|+|.++.++|++|++ ++..|+++..++++.+ .+.|++|+++ +++|+.+|+.++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l--~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v--~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDL--GGVDGLLHISDMSWGRVKHPSEVVNVGDEV--EVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEE--CCeEEEEEhHHCCCccccCHhHEECCCCEE--EEEEEEEECCCCEEecC
Confidence 488999999999999999999 4799999988887544 4568999999 99999999999998876
No 177
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.76 E-value=5.5e-05 Score=61.20 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=52.8
Q ss_pred CcEEEEEEEEEecceEEEEeCC-CceeeEeccccCcccccC---cccccccCCEE-EEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATRTL---VYTRFVIDTVI-VCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~~~---~~~~~~~G~~V-~~~Vl~vd~~~~~~ 1014 (1026)
|++|+|+|...++.+++|++.+ |+.|++|..+||| ..++ .-..+.+||++ ++.|+ |.....+
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~~l~a~l~~~HLsD-~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i 67 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPEEIRAFLPTMHLSD-HVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRI 67 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCCCcEEEEEccccCC-chhhCHHHHhhhhcCCCccceEEE--eccccEE
Confidence 7899999999999999999998 9999999999999 4333 33678899999 99999 6655554
No 178
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=97.75 E-value=1.1e-05 Score=92.08 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=90.2
Q ss_pred cccCceEEEEEeeeeeccceeEEEEechHHHHhhhccCCCccccccccc--CCceEEeeeecccCCcceeeccccceeec
Q psy9769 598 VILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLV--PGMKVIANICQQLPHGWKAKLKNTQFKAF 675 (1026)
Q Consensus 598 ~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~~~~~~~~~~~~~~l~--~G~~v~~~V~~v~~~G~~v~~~~~~~~gf 675 (1026)
+++|+.+++.|...+-. .+.++..+..+........+...++.++ .|.+|+|+|.++.++|++|++ +++.||
T Consensus 87 ~~vGD~ie~~I~~~~fg----Ria~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL--ggvea~ 160 (470)
T PRK09202 87 AEVGDYIEEEIESVDFG----RIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL--GRAEAI 160 (470)
T ss_pred ccCCCeEEEEEccccCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE--CCeEEE
Confidence 78999999999876632 2344444444444444444667778886 899999999999999999999 799999
Q ss_pred cCcccccchhhhhhcccccccccceeeeeccccc--eEEeechhh
Q psy9769 676 ISPEAMSTAYNAKYLTNKRVDLDCSVLYVCPRHF--HVYLSCNEA 718 (1026)
Q Consensus 676 i~~~~~~~~~~~~~~~G~~~~~~~~Il~vd~~~~--~v~lS~k~~ 718 (1026)
+|.++++ ..+.|++|+++ +|.|+.||+.++ ++.||++..
T Consensus 161 LP~sE~i--p~E~~~~GdrI--ka~I~~Vd~~~kg~qIilSRt~p 201 (470)
T PRK09202 161 LPRKEQI--PRENFRPGDRV--RAYVYEVRKEARGPQIILSRTHP 201 (470)
T ss_pred ecHHHcC--CCccCCCCCEE--EEEEEEEecCCCCCeEEEEeCcH
Confidence 9999986 46789999999 999999999988 999998864
No 179
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=97.74 E-value=2.8e-05 Score=65.17 Aligned_cols=66 Identities=12% Similarity=0.148 Sum_probs=57.9
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccch-h----hhhhcccccccccceeeeeccccceEEee
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTA-Y----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~-~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
.+|+.+.|+|.++.++|++|.+. .+..||++.+.+++. + ...|++|+++ +++|+.+|+.++++.++
T Consensus 2 ~~g~~~~g~V~~i~~~G~fv~l~-~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v--~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 2 PEGTRLFGKVTNLTDYGCFVELE-EGVEGLVHVSEMDWTNKNIHPSKVVSLGDEV--EVMVLDIDEERRRISLG 72 (72)
T ss_pred cCCCEEEEEEEEEEeeEEEEEcC-CCCEEEEEEEeccCcccccCcccEeCCCCEE--EEEEEEeeCCcCEEeCC
Confidence 57999999999999999999994 679999999998754 2 3568999999 99999999999998764
No 180
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=97.72 E-value=3.3e-05 Score=63.90 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=56.5
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEee
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
|+.+.|+|.++.++|++|.+. .+..||++.++++..+ ...|++|+.+ +|+|+.+|+.++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~-~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v--~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIG-VKQDGLIHISKMADRFVSHPSDVVSVGDIV--EVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcC-CCCEEEEEHHHCCCccccCHHHhcCCCCEE--EEEEEEEECCCCEEecC
Confidence 678999999999999999994 6799999998887654 4568999999 99999999999998876
No 181
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.70 E-value=4.8e-05 Score=65.57 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=61.4
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNE 717 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~ 717 (1026)
.+|++|.|+|.++.++|+.|++ ...+.|+++.++++... .+.+++|+.+ +|+|+.+|+. +++.||++.
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i-~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i--~~~V~~~~~~-~~i~LS~~~ 76 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDI-LSRGTARLEDSSATEKDKKEIRKSLQPGDLI--LAKVISLGDD-MNVLLTTAD 76 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEe-CCCceEEeechhccCcchHHHHhcCCCCCEE--EEEEEEeCCC-CCEEEEECC
Confidence 6899999999999999999999 47899999999987553 5669999999 9999999997 899999986
No 182
>KOG2838|consensus
Probab=97.70 E-value=2.9e-05 Score=77.81 Aligned_cols=117 Identities=21% Similarity=0.343 Sum_probs=76.1
Q ss_pred HHHHHHHHHhcCCCcc-EEEEE-CC--------------EEEEEEhhhhhccChhhHhhhc-CCccC---cc------cE
Q psy9769 52 AFETMNIMRKQNLLCD-VKLIA-DG--------------VEVAAHKMVLAACSPYFHAMFI-SFEES---KQ------ER 105 (1026)
Q Consensus 52 l~~~l~~l~~~~~~~D-v~i~v-~~--------------~~~~~Hr~vL~~~S~yF~~mf~-~~~e~---~~------~~ 105 (1026)
+-.+++.|++..-.-| +.+.+ +| ..++||++|.+++|++||.++. ...+. .. ..
T Consensus 222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkR 301 (401)
T KOG2838|consen 222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKR 301 (401)
T ss_pred hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCce
Confidence 4445666776655444 44433 22 3689999999999999999886 33322 11 24
Q ss_pred EEecC-CCHHH-HHHHhhheecceeeech----------------------------hhHHHHHHHHHhcCchhHHhHHH
Q psy9769 106 IVLKG-VDPNA-LKLLIDYVYSCEIYVTE----------------------------ENVQMLLPAANLLQLTDVRDACC 155 (1026)
Q Consensus 106 i~l~~-~~~~~-f~~~l~~~Ytg~~~i~~----------------------------~~v~~ll~~A~~l~l~~L~~~c~ 155 (1026)
|.+.+ +=|.+ -..++.+|||..++++. ...++|+.+|-+|.++.|.++|+
T Consensus 302 IifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e 381 (401)
T KOG2838|consen 302 IIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACE 381 (401)
T ss_pred eechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55543 33344 46788999998775431 23467778888888888888888
Q ss_pred HhhhcccCCcchh
Q psy9769 156 DFLQCQLHPTNCL 168 (1026)
Q Consensus 156 ~~l~~~l~~~n~~ 168 (1026)
..+......++..
T Consensus 382 ~Vir~acaadlsn 394 (401)
T KOG2838|consen 382 DVIRKACAADLSN 394 (401)
T ss_pred HHHHhhhhhhccc
Confidence 8777665544433
No 183
>PF13854 Kelch_5: Kelch motif
Probab=97.69 E-value=7.1e-05 Score=54.91 Aligned_cols=34 Identities=29% Similarity=0.631 Sum_probs=29.6
Q ss_pred CCccccceeeEEECCEEEEEeccCC-------CeEEEeCCC
Q psy9769 352 MPTRRCRAGLVFLHEKVYAVGGFNG-------SLRVYDPST 385 (1026)
Q Consensus 352 ~p~~r~~~~~~~~~~~iyv~GG~~~-------~~~~yd~~~ 385 (1026)
+|.+|.+|++++++++||++||.++ ++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 5889999999999999999999882 578888765
No 184
>KOG2838|consensus
Probab=97.69 E-value=4.4e-05 Score=76.53 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=77.6
Q ss_pred chHHHHHHHHHHHhcCCCccEEEEECCEEEEEEhhhhhccChhhHhhhcCCccC-c--ccEEEecCCCHHHHHHHhhhee
Q psy9769 48 HTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEES-K--QERIVLKGVDPNALKLLIDYVY 124 (1026)
Q Consensus 48 ~~~~l~~~l~~l~~~~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~~~~e~-~--~~~i~l~~~~~~~f~~~l~~~Y 124 (1026)
....+++++.+.+.-....|+-|+.....|+|||++|+++|++|+.+.+...|- . -..+..-+++.++|+++|+|+|
T Consensus 113 ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 113 EANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred chhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 455677888888888888899999999999999999999999999888721111 1 1245556899999999999999
Q ss_pred cceee---echhhHHHHHHHHHhcCchh
Q psy9769 125 SCEIY---VTEENVQMLLPAANLLQLTD 149 (1026)
Q Consensus 125 tg~~~---i~~~~v~~ll~~A~~l~l~~ 149 (1026)
+|+.- +...|+.-|-+++.-|+...
T Consensus 193 tgEfgmEd~~fqn~diL~QL~edFG~~k 220 (401)
T KOG2838|consen 193 TGEFGMEDLGFQNSDILEQLCEDFGCFK 220 (401)
T ss_pred hcccchhhcCCchHHHHHHHHHhhCCch
Confidence 99873 34455666666666666543
No 185
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=97.63 E-value=0.00025 Score=72.17 Aligned_cols=144 Identities=17% Similarity=0.114 Sum_probs=107.2
Q ss_pred ccccCccccccccccc-ccceeeeecccceeeeeeccc--------cccCceEEEEEeeeeeccceeEEEEechHHHHhh
Q psy9769 561 TLETGLVLPACVHSKE-DHGYLLDVGVKNTRAFIKYDS--------VILGQIVTCMISKIKVAASMSILEVTLDEELIRS 631 (1026)
Q Consensus 561 ~l~~G~~v~g~V~sv~-d~g~~v~~G~~~~~gf~~~~~--------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~ 631 (1026)
.+..|..-.++|++++ +.|++||.|++ -+-++|.++ +++|+.+.+.+. ++.. .+..........+..
T Consensus 70 ~~tvg~~g~~~Vv~v~~~lGaFlD~Gl~-KDl~vp~~elp~~~~~wpq~Gd~l~v~l~-~Dkk--~Ri~g~~a~~~~l~~ 145 (287)
T COG2996 70 KATVGEYGWLKVVEVNKDLGAFLDWGLP-KDLLVPLDELPTLKSLWPQKGDKLLVYLY-VDKK--GRIWGTLAIEKILEN 145 (287)
T ss_pred eEeecceeEEEEEEEcCCcceEEecCCC-cceeeehhhcccccccCCCCCCEEEEEEE-EccC--CcEEEEecchhHHHh
Confidence 3456888889999999 99999999998 799999865 778999988763 3443 222222222233322
Q ss_pred hccCCCcccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchhhhhhcccccccccceeeeeccccceE
Q psy9769 632 ANRLSPSQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAYNAKYLTNKRVDLDCSVLYVCPRHFHV 711 (1026)
Q Consensus 632 ~~~~~~~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~~~~~~~G~~~~~~~~Il~vd~~~~~v 711 (1026)
.. .....+ ..+..|+|+|-.....|.+|-. .++..|||+.++. ...+..|+++ ++||+.+.+ .+++
T Consensus 146 l~-----~~~~~~-l~nq~v~~tVYr~~~~G~fv~~-e~~~~GfIh~sEr----~~~prlG~~l--~~rVi~~re-Dg~l 211 (287)
T COG2996 146 LA-----TPAYNN-LKNQEVDATVYRLLESGTFVIT-ENGYLGFIHKSER----FAEPRLGERL--TARVIGVRE-DGKL 211 (287)
T ss_pred cC-----Cccchh-hhcCeeeeEEEEEeccceEEEE-cCCeEEEEcchhh----cccccCCceE--EEEEEEEcc-CCee
Confidence 11 111222 3478899999999999999888 5889999988764 4568899999 999999999 8999
Q ss_pred Eeechhhhhhc
Q psy9769 712 YLSCNEALLER 722 (1026)
Q Consensus 712 ~lS~k~~l~~~ 722 (1026)
.||+++...+.
T Consensus 212 nLSl~p~~~E~ 222 (287)
T COG2996 212 NLSLRPRAHEM 222 (287)
T ss_pred ecccccccHHh
Confidence 99999964443
No 186
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=97.58 E-value=0.00029 Score=61.05 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=50.0
Q ss_pred CCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCc-----------ccccccCCEEEEEEEEEeCC
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLV-----------YTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~-----------~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
+|+++.|.|++++++|+||.+ +.++||++.+.+.++..-+| ...+++|+.|++||+.+..+
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~-Gpl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~ 72 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEV-GPLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVD 72 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEE-cCceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEc
Confidence 489999999999999999999 68899999999975432222 34588999999999988654
No 187
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=97.57 E-value=0.00027 Score=59.55 Aligned_cols=60 Identities=15% Similarity=0.308 Sum_probs=42.4
Q ss_pred CCCcEEEEEEEEEecceEEEEeC------------------CCceeeEeccccCccccc--CcccccccCCEEEEEEEEE
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFD------------------GDISGVFPTSAMSQATRT--LVYTRFVIDTVIVCQILKY 1007 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~------------------~~i~Gl~~~~~ls~~~~~--~~~~~~~~G~~V~~~Vl~v 1007 (1026)
++|++|.|.|+++++.-+.|++. +...|+++++++...... ++.+.|++||.|+|+|++.
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 45999999999999999888872 357899999999763332 4689999999999999974
No 188
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=97.53 E-value=7.4e-05 Score=78.76 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=64.3
Q ss_pred cCCceEEeeeecccCCcceeecc-ccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLK-NTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~-~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
.+|+.|.|+|.++.++|++|++. ++++.||++.++++..+ .+.+++|+.+ .|+|+.+|+.++++.||++..
T Consensus 7 ~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V--~vkVi~VD~~k~~I~LSlK~v 82 (262)
T PRK03987 7 EEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKV--VCKVIRVDPRKGHIDLSLKRV 82 (262)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEE--EEEEEEEecccCeEEEEEEec
Confidence 67999999999999999999995 23799999999998766 5678999999 999999999999999999964
No 189
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=97.53 E-value=8.2e-05 Score=61.55 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=56.3
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeec
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
|..+.|+|.++.++|++|.+. .+..||++..++++.+ .+.|+.|+.+ +++|+.+|+ .+++.+|+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~-~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v--~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEIL-PGKDGLVHISELSDERVEKVEDVLKVGDEV--KVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeC-CCCEEEEEhHHcCCccccCHHHccCCCCEE--EEEEEEECC-CCcEEeeC
Confidence 578899999999999999994 6799999998887765 4568999999 999999999 88988875
No 190
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.49 E-value=9.8e-05 Score=61.40 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=53.0
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh------hhhhcccccccccceeeeeccccce
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY------NAKYLTNKRVDLDCSVLYVCPRHFH 710 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~------~~~~~~G~~~~~~~~Il~vd~~~~~ 710 (1026)
|++|.|+|.++.++|++|++ ..++.|+++..++++.+ .+.|++|+.+ +|+|+.+|.++++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l-~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i--~~kVl~~d~~~~~ 66 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQL-ADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKI--KARVIGGHDAKTH 66 (70)
T ss_pred CCEEEEEEEEEECCcEEEEe-CCCcEEEEEHHHhccccccccChhHhCCCCCEE--EEEEEEEeCcccc
Confidence 78999999999999999999 47899999999987663 4669999999 9999999988754
No 191
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=97.47 E-value=0.0001 Score=63.01 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=57.9
Q ss_pred CceEEeeeecccCCcceeeccc--cceeeccCcccccchh-----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 648 GMKVIANICQQLPHGWKAKLKN--TQFKAFISPEAMSTAY-----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~--~~~~gfi~~~~~~~~~-----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
|..+.|+|.++.++|++|++.. .+..||++.+++++.+ ...|++|+++ +++|+.+| ++++.+|+++.
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v--~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKV--KVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEE--EEEEEEEe--CCEEEEEEEec
Confidence 6789999999999999999942 2699999999987764 2468999999 99999999 88999999874
No 192
>KOG2716|consensus
Probab=97.45 E-value=0.00039 Score=70.58 Aligned_cols=93 Identities=18% Similarity=0.352 Sum_probs=78.8
Q ss_pred EEEEECCEEEEEEhhhhhccChhhHhhhc-CC--ccCcccEEEecCCCHHHHHHHhhheecceeeec--hhhHHHHHHHH
Q psy9769 68 VKLIADGVEVAAHKMVLAACSPYFHAMFI-SF--EESKQERIVLKGVDPNALKLLIDYVYSCEIYVT--EENVQMLLPAA 142 (1026)
Q Consensus 68 v~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~--~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~--~~~v~~ll~~A 142 (1026)
|.+.|||+.|..++.=|.....||++|+. .+ .-..+..|-| +=+|.=|+.+|+||-.|.+.++ ..++.+|+.=|
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA 85 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGDVDLPESEKELKELLREA 85 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhcccccCccchHHHHHHHHHH
Confidence 66889999999999999999999999999 54 2223345666 5689999999999998887765 46788999999
Q ss_pred HhcCchhHHhHHHHhhhcc
Q psy9769 143 NLLQLTDVRDACCDFLQCQ 161 (1026)
Q Consensus 143 ~~l~l~~L~~~c~~~l~~~ 161 (1026)
.+|.++.|.+.|..-+...
T Consensus 86 ~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 86 EFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHhhHHHHHHHHHHHhhhc
Confidence 9999999999999987755
No 193
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=97.45 E-value=0.00011 Score=88.74 Aligned_cols=67 Identities=21% Similarity=0.433 Sum_probs=56.9
Q ss_pred eeCceee-eeEeEEEEeeeEEEeccceeeeeccc-----ceeeCCccccccCcEEee-------cCeEEEehhhhhcccC
Q psy9769 873 NLGDEVS-CVVKGISVRGVIAQVGYYKLKATCEN-----EYVEGNKADIKVGDEVQA-------KNSIEVAFKSLYRIAQ 939 (1026)
Q Consensus 873 ~~G~~~~-g~v~~i~~~g~~v~l~~~~~~~~~~~-----~~~~~~~~~~kvG~~v~~-------~~~i~ls~K~l~~~~~ 939 (1026)
..|.+.. |+|++|.+||+||+|.+ |++||+|+ +++.++.+.|++||+|+. ++||.|++|++.++||
T Consensus 752 ~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~~grI~LSlK~l~~~Pw 830 (891)
T PLN00207 752 TVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVNDKGQLRLSRRALLPEAN 830 (891)
T ss_pred CCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECCCCcEEEEEeccccCch
Confidence 4799995 69999999999999998 89999999 446677788999999883 5899999999865544
Q ss_pred C
Q psy9769 940 P 940 (1026)
Q Consensus 940 ~ 940 (1026)
.
T Consensus 831 ~ 831 (891)
T PLN00207 831 S 831 (891)
T ss_pred h
Confidence 4
No 194
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.37 E-value=0.00039 Score=61.70 Aligned_cols=86 Identities=16% Similarity=0.336 Sum_probs=66.4
Q ss_pred EEEEECCEEEEEEhhhhh-ccChhhHhhhc-C---CccCcccEEEecCCCHHHHHHHhhheec-ceeeec-hhhHHHHHH
Q psy9769 68 VKLIADGVEVAAHKMVLA-ACSPYFHAMFI-S---FEESKQERIVLKGVDPNALKLLIDYVYS-CEIYVT-EENVQMLLP 140 (1026)
Q Consensus 68 v~i~v~~~~~~~Hr~vL~-~~S~yF~~mf~-~---~~e~~~~~i~l~~~~~~~f~~~l~~~Yt-g~~~i~-~~~v~~ll~ 140 (1026)
|.|.|+|+.|.+-+..|. ....+|.+|+. + .....+..+-+ +=+|..|+.+|+|+.+ +.+..+ ...+..++.
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 688999999999999999 55679999998 3 23345567777 5799999999999999 677664 556788999
Q ss_pred HHHhcCchhH-HhHH
Q psy9769 141 AANLLQLTDV-RDAC 154 (1026)
Q Consensus 141 ~A~~l~l~~L-~~~c 154 (1026)
-|.+|+++.| .+.|
T Consensus 80 Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 80 EAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHT-HHHHBHHC
T ss_pred HHHHcCCCccccCCC
Confidence 9999999998 7766
No 195
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.33 E-value=0.0019 Score=67.15 Aligned_cols=119 Identities=14% Similarity=0.196 Sum_probs=83.2
Q ss_pred cCCcEEEEEcCCCCCCCcEEEEEECCC----CcEEEcC-CCCccccceeeEEE-CCEEEEEeccCCCeEEEeCC-CC---
Q psy9769 317 RVPKVMLVVGGQAPKAIRSVECYDFKT----ERWQSVA-EMPTRRCRAGLVFL-HEKVYAVGGFNGSLRVYDPS-TN--- 386 (1026)
Q Consensus 317 ~~~~~i~v~GG~~~~~~~~~~~yd~~~----~~W~~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~yd~~-~~--- 386 (1026)
..++.+++.||... ..+.+..|+|.. ..|...+ .|..+|++.++..+ +|+++|+||..+..+-|-|. ..
T Consensus 75 L~dG~ll~tGG~~~-G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~ 153 (243)
T PF07250_consen 75 LPDGRLLQTGGDND-GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG 153 (243)
T ss_pred CCCCCEEEeCCCCc-cccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCC
Confidence 34778999999753 445677888865 6798875 58999999998887 58999999998654444343 21
Q ss_pred --eEEeCCC----CcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcE-EEccCCCC
Q psy9769 387 --EWSSAPP----MEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW-NMIAPMST 443 (1026)
Q Consensus 387 --~W~~~~~----~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~ 443 (1026)
.|..+.. .+..-+-+.-..-+|+||+++.. ....||+.++++ +.++++|.
T Consensus 154 ~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 154 PVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSIIYDYKTNTVVRTLPDLPG 210 (243)
T ss_pred ceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEEEeCCCCeEEeeCCCCCC
Confidence 2222221 23333334444559999999873 456899999987 78888884
No 196
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=97.32 E-value=0.00013 Score=79.35 Aligned_cols=102 Identities=16% Similarity=0.281 Sum_probs=72.9
Q ss_pred cccccCcEEee-------cCeEEEehhh-h---hcccCCCCccccCCC--CcEEEEEEEEEecc-eEEEEeCCCceeeEe
Q psy9769 913 ADIKVGDEVQA-------KNSIEVAFKS-L---YRIAQPLTSVKHTKP--GRLVWGVLKEKMPG-GVRVEFDGDISGVFP 978 (1026)
Q Consensus 913 ~~~kvG~~v~~-------~~~i~ls~K~-l---~~~~~~~~~~~~~~~--G~~v~G~V~~i~~~-G~fV~~~~~i~Gl~~ 978 (1026)
..+++||.++. .|.-.-+.|| + ++....-.-|++... |++++|+|.++... +++|.+ ++++|++|
T Consensus 89 ~~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 89 PSVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKKKVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 46889999882 4445556666 3 221111112333344 99999999999864 599999 48999999
Q ss_pred ccccCcccccCcccccccCCEEEEEEEEEeCCe-----eeechhhhhh
Q psy9769 979 TSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE-----LLLTEADEKL 1021 (1026)
Q Consensus 979 ~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~-----~~~~~~~~~~ 1021 (1026)
+++. .|.+.|++||.|+|.|.+|+... +.||-...+|
T Consensus 168 ~~eq------ip~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~p~~ 209 (374)
T PRK12328 168 MKNR------IKGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTSPKF 209 (374)
T ss_pred HHHc------CCCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCCHHH
Confidence 9988 68899999999999999998754 4566544433
No 197
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.25 E-value=0.012 Score=62.19 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=91.1
Q ss_pred cEEEEEECCCCcEEEcCCCCcccc---c-eeeEEECC-----EEEEEecc-----CCCeEEEeCCCCeEEeCCCCcCC-c
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRC---R-AGLVFLHE-----KVYAVGGF-----NGSLRVYDPSTNEWSSAPPMEAR-R 398 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~---~-~~~~~~~~-----~iyv~GG~-----~~~~~~yd~~~~~W~~~~~~p~~-r 398 (1026)
..+..+||.|++|..+|+.+.++. . .....++. ++..+... ...+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 468899999999999986554211 1 11112221 55555432 23678999999999987643321 1
Q ss_pred ceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcc----eeEEEEECCEEEEEeCCC-----ceeeE
Q psy9769 399 STLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRS----SVGVGVLNGCLYAENLDG-----RILGC 469 (1026)
Q Consensus 399 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~----~~~~~~~~~~lyv~GG~~-----~~~~~ 469 (1026)
.....+.++|.||-+...........+..||..+.+|...-++|..+. ....+.++|+|.++.... .++..
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl 173 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVL 173 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCCcEEEEEE
Confidence 112267789999988754322222379999999999995223444332 346677899998886421 12222
Q ss_pred Ec-CcccEEEeecCC
Q psy9769 470 VK-EITDWGLIIELP 483 (1026)
Q Consensus 470 ~~-~~~~W~~~~~lP 483 (1026)
.+ ....|++.-.+|
T Consensus 174 ~d~~~~~W~k~~~i~ 188 (230)
T TIGR01640 174 NDAGKQEWSKLFTVP 188 (230)
T ss_pred CCCCCCceeEEEEEc
Confidence 21 234598775554
No 198
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=97.25 E-value=0.00034 Score=60.78 Aligned_cols=71 Identities=11% Similarity=0.053 Sum_probs=59.8
Q ss_pred cccCCceEEeeeecccCC--cceeeccccceeeccCcccccchh-------hhhhcccccccccceeeeeccccceEEee
Q psy9769 644 NLVPGMKVIANICQQLPH--GWKAKLKNTQFKAFISPEAMSTAY-------NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 644 ~l~~G~~v~~~V~~v~~~--G~~v~~~~~~~~gfi~~~~~~~~~-------~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
....|+++.|+|+++.++ |++|++. .+..||+|.+++++.. .+.+++|+++ .++|+...-..|...|+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~-~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v--~VqV~~~~~~~K~~~lt 80 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIG-LGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEI--LVQVVKEPIGTKGPRLT 80 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeC-CCCEEEEEhHHcCchhccccCCHHHcCCCCCEE--EEEEEEecCCCCCceEE
Confidence 346899999999999997 9999994 6899999999998732 6779999999 99999987777766666
Q ss_pred chh
Q psy9769 715 CNE 717 (1026)
Q Consensus 715 ~k~ 717 (1026)
.+-
T Consensus 81 ~~~ 83 (88)
T cd04453 81 TNI 83 (88)
T ss_pred EEE
Confidence 553
No 199
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=97.24 E-value=0.0002 Score=58.38 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=53.6
Q ss_pred EEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEee
Q psy9769 651 VIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 651 v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
+.|+|.++.++|++|.+. .+..||++.++++..+ .+.|++|+.+ +|+|+.+|+.++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~-~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v--~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELE-DGVEGLVHISELSDKFVKDPSEVFKVGDEV--EVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEec-CCCEEEEEHHHCCCccccCHhhEeCCCCEE--EEEEEEEcCCcCEEecC
Confidence 478999999999999993 6899999999988753 5679999999 99999999999888775
No 200
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0014 Score=63.38 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=59.2
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCC--C--------ceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeech
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDG--D--------ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTE 1016 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~--~--------i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~ 1016 (1026)
.++|++|-|.|+++....+.|++.. + ..|-+|.|++++..+.+.++.|++||.|+|+|++.- ..+.||-
T Consensus 62 ~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~-~~~~Lst 140 (188)
T COG1096 62 PKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG-DPIQLST 140 (188)
T ss_pred CCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC-CCeEEEe
Confidence 3669999999999999999998842 2 567899999999999999999999999999999985 5555553
No 201
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=97.22 E-value=0.00035 Score=60.43 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=56.8
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeeccccceEE
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRHFHVY 712 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~~~v~ 712 (1026)
|..++|.|.++.++|++|.+...++.|+++.+++++.+ ...|++|+++ +++|+.+|++++++.
T Consensus 2 g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v--~v~v~~vd~~~~~i~ 79 (83)
T cd04471 2 GEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKV--KVRVVRVDLDRRKID 79 (83)
T ss_pred CCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEE--EEEEEEeccccCEEE
Confidence 78999999999999999999422799999888877532 2578999999 999999999999998
Q ss_pred eec
Q psy9769 713 LSC 715 (1026)
Q Consensus 713 lS~ 715 (1026)
+++
T Consensus 80 ~~l 82 (83)
T cd04471 80 FEL 82 (83)
T ss_pred EEE
Confidence 875
No 202
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=97.19 E-value=0.00051 Score=58.21 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=58.7
Q ss_pred cccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchhhhhhcccccccccceeeeeccccceEEeec
Q psy9769 640 VSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAYNAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 640 ~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
...+.++.|+.++|+|.++.++|+++.+. .+..||++.+++. ..|+.|+++ +++|+.+ .+++++.+|+
T Consensus 9 ~~~~~~~~G~~~~g~V~~i~~~G~fV~l~-~~~~Glv~~se~~----~~~~iGd~v--~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 9 CTMEDLEVGKLYKGKVNGVAKYGVFVDLN-DHVRGLIHRSNLL----RDYEVGDEV--IVQVTDI-PENGNIDLIP 76 (77)
T ss_pred cchhhCCCCCEEEEEEEeEecceEEEEEC-CCcEEEEEchhcc----CcCCCCCEE--EEEEEEE-CCCCcEEEEE
Confidence 34556889999999999999999999994 6799999888763 569999999 9999999 8888888875
No 203
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.17 E-value=0.014 Score=60.05 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=87.3
Q ss_pred cEEEEEcCCCC--CCCcEEEEEECCCCc--------EE---EcCCCCccccceeeEEEC----CEEEEEeccCC------
Q psy9769 320 KVMLVVGGQAP--KAIRSVECYDFKTER--------WQ---SVAEMPTRRCRAGLVFLH----EKVYAVGGFNG------ 376 (1026)
Q Consensus 320 ~~i~v~GG~~~--~~~~~~~~yd~~~~~--------W~---~~~~~p~~r~~~~~~~~~----~~iyv~GG~~~------ 376 (1026)
...++.||.++ ..++.+|.....+.. .. .+.+.|.+|++|++-++. ....+|||+.-
T Consensus 39 ~~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR 118 (337)
T PF03089_consen 39 EQYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR 118 (337)
T ss_pred eeEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence 45667788753 345666665544322 11 246789999999987773 36778899641
Q ss_pred -------------CeEEEeCCCCeEE--eCCCCcCCcceeEEEEECCEEEEEeccC--CCCCCCEEEEEECC---CCcEE
Q psy9769 377 -------------SLRVYDPSTNEWS--SAPPMEARRSTLGVAVLNSLIYAVGGFD--GSSGLNSAEVYDPS---TEKWN 436 (1026)
Q Consensus 377 -------------~~~~yd~~~~~W~--~~~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~---~~~W~ 436 (1026)
.++..|+.-+.++ .+|.+....+.|.+.+-++.+|++||+. .+.+...+++...+ ..-+-
T Consensus 119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~v 198 (337)
T PF03089_consen 119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAV 198 (337)
T ss_pred chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCcee
Confidence 3666787777665 3567778888898889999999999974 23334455544321 11122
Q ss_pred EccCCCCCcceeEEEE--E-CCEEEEEeCCC
Q psy9769 437 MIAPMSTRRSSVGVGV--L-NGCLYAENLDG 464 (1026)
Q Consensus 437 ~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~ 464 (1026)
.-.-++...+-.++.+ . .+...|+||+.
T Consensus 199 sC~vl~~glSisSAIvt~~~~~e~iIlGGY~ 229 (337)
T PF03089_consen 199 SCTVLQGGLSISSAIVTQTGPHEYIILGGYQ 229 (337)
T ss_pred EEEECCCCceEeeeeEeecCCCceEEEeccc
Confidence 2222333333333322 2 34566778853
No 204
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=97.12 E-value=0.00089 Score=75.69 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCcEEEEEEEEEecc--eEEEEeCCCceeeEeccccCcc------------cccCcccccccCCEEEEEEEE
Q psy9769 948 KPGRLVWGVLKEKMPG--GVRVEFDGDISGVFPTSAMSQA------------TRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~--G~fV~~~~~i~Gl~~~~~ls~~------------~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
.+|+++.|+|+++.+. |+||.++.+-.||+|.+++.+. ...++.+.+++||+|.++|++
T Consensus 24 ~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 24 LKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 4599999999999999 9999999999999999999652 244556789999999999998
No 205
>KOG2916|consensus
Probab=97.12 E-value=0.00036 Score=69.97 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=64.4
Q ss_pred cccCCC--CcEEEEEEEEEecceEEEEe--CCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 944 VKHTKP--GRLVWGVLKEKMPGGVRVEF--DGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 944 ~~~~~~--G~~v~G~V~~i~~~G~fV~~--~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|+..+| +++|.+.|+.|.+-|++|++ +|+|+|+|-.|+||..++-...+..++|-.=-|.||.||+++.-+
T Consensus 9 ye~kyPev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYI 83 (304)
T KOG2916|consen 9 YENKYPEVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYI 83 (304)
T ss_pred hhccCCCcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCce
Confidence 344455 99999999999999999999 579999999999999999899999999999999999999988766
No 206
>PRK05054 exoribonuclease II; Provisional
Probab=97.12 E-value=0.00092 Score=80.67 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=57.9
Q ss_pred cccCCCCc--EEEEEEEEEecceEEEEeCC-CceeeEeccccCcc---cc--cC------c-ccccccCCEEEEEEEEEe
Q psy9769 944 VKHTKPGR--LVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQA---TR--TL------V-YTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 944 ~~~~~~G~--~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~---~~--~~------~-~~~~~~G~~V~~~Vl~vd 1008 (1026)
|-+.++|+ ...|.|+.+++||+||++.+ +++||||.+.|.+. +. .+ . ...|+.||.|+++|.+||
T Consensus 554 y~~~~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd 633 (644)
T PRK05054 554 YLKDKAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVR 633 (644)
T ss_pred HHhhccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEc
Confidence 55556764 99999999999999999976 79999999999652 11 11 1 247999999999999999
Q ss_pred CCeeeec
Q psy9769 1009 DGELLLT 1015 (1026)
Q Consensus 1009 ~~~~~~~ 1015 (1026)
..+..+.
T Consensus 634 ~~~~~i~ 640 (644)
T PRK05054 634 METRSII 640 (644)
T ss_pred cccCeEE
Confidence 9887763
No 207
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.05 E-value=0.045 Score=61.19 Aligned_cols=120 Identities=18% Similarity=0.212 Sum_probs=84.6
Q ss_pred ECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCC-----CEEEEE--E-------
Q psy9769 364 LHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGL-----NSAEVY--D------- 429 (1026)
Q Consensus 364 ~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~v~~y--d------- 429 (1026)
.+.+|+.++.. +...+||+.+..-..+|.|+.+.....++.++++||++......... ...|.+ +
T Consensus 75 ~gskIv~~d~~-~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~ 153 (342)
T PF07893_consen 75 HGSKIVAVDQS-GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPS 153 (342)
T ss_pred cCCeEEEEcCC-CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccccc
Confidence 58899888665 56889999999988888888777777778889999999875322111 144444 4
Q ss_pred -CCCCcEEEccCCCCCcce-------eEEEEE-CCEEEEE-eCC-CceeeEEcCcccEEEeec--CCC
Q psy9769 430 -PSTEKWNMIAPMSTRRSS-------VGVGVL-NGCLYAE-NLD-GRILGCVKEITDWGLIIE--LPN 484 (1026)
Q Consensus 430 -~~~~~W~~~~~~p~~r~~-------~~~~~~-~~~lyv~-GG~-~~~~~~~~~~~~W~~~~~--lP~ 484 (1026)
.....|+.+++.|..+.. .+-+++ +..|+|- -|. .+.+.||..+.+|+..+. ||.
T Consensus 154 ~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 154 PEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred CCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecCc
Confidence 234468888876644332 234556 6689984 332 257889999999999987 775
No 208
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=97.03 E-value=0.0019 Score=65.37 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=61.6
Q ss_pred cccccCCceEEeeeecccCCcceeecc---------ccceeeccCcccccchh----hhhhcccccccccceeeeecccc
Q psy9769 642 LLNLVPGMKVIANICQQLPHGWKAKLK---------NTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRH 708 (1026)
Q Consensus 642 ~~~l~~G~~v~~~V~~v~~~G~~v~~~---------~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~ 708 (1026)
.....+|++|.|+|+++.+.|++|++. ..++.||++.+++++.. .+.|++|+.+ +|+|+.+|
T Consensus 59 ~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V--~akV~~i~--- 133 (189)
T PRK09521 59 PPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIV--RAKVISYT--- 133 (189)
T ss_pred CCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEE--EEEEEecC---
Confidence 345679999999999999999999984 13688999999888665 5679999999 99999999
Q ss_pred ceEEeechhh
Q psy9769 709 FHVYLSCNEA 718 (1026)
Q Consensus 709 ~~v~lS~k~~ 718 (1026)
+++.||+++.
T Consensus 134 ~~i~LS~k~~ 143 (189)
T PRK09521 134 DPLQLSTKGK 143 (189)
T ss_pred CcEEEEEecC
Confidence 7899999973
No 209
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=97.02 E-value=0.0007 Score=80.23 Aligned_cols=67 Identities=6% Similarity=0.047 Sum_probs=58.1
Q ss_pred cccCCceEEeeeecccCCcceeeccccceeeccCccccc---c-hh----hhhhcccccccccceeeeeccccceEEee
Q psy9769 644 NLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMS---T-AY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLS 714 (1026)
Q Consensus 644 ~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~---~-~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS 714 (1026)
..+.|++++|+|+++.++|++|++. .|..||+|.++++ | .+ .+.+++||++ +++|+.+|+ ++++.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~-~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V--~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLL-PGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKI--QVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEec-CCceEEEEhhhccccccccCcCCHHHcCCCCCEE--EEEEEEECC-CCCeeec
Confidence 3679999999999999999999994 7899999999885 3 22 6679999999 999999996 6788775
No 210
>KOG1856|consensus
Probab=96.96 E-value=0.00091 Score=80.38 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=63.0
Q ss_pred CCCCcEEEEEEEEEecce---EEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 947 TKPGRLVWGVLKEKMPGG---VRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G---~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
.+.|.+|.++|++++..- |-|.+..|+.|+||.+++|+..+.+|...+++||+|.|||+++|.+++.+
T Consensus 983 ~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v 1053 (1299)
T KOG1856|consen 983 FYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSV 1053 (1299)
T ss_pred hccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhh
Confidence 378999999999997766 77899999999999999999989999999999999999999999998765
No 211
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=96.95 E-value=0.0014 Score=53.29 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=56.7
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh------hhhhcccccccccceeeeeccccceEEeech
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY------NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCN 716 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~------~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k 716 (1026)
|.+|+|+|.+..+.+++|++...++.|+++..|++... -..+++|++++ ++-|| |+.++.+.+|.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~-~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIP-NLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCCCcEEEEEccccCCchhhCHHHHhhhhcCCCcc-ceEEE--eccccEEEEecC
Confidence 68899999999999999999877999999999998833 35788999985 66666 999999998865
No 212
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.90 E-value=0.0026 Score=63.04 Aligned_cols=60 Identities=8% Similarity=0.038 Sum_probs=48.9
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcc--cc----------cCcccccccCCEEEEEEEEEeCC
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQA--TR----------TLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~--~~----------~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
|+++.|+|+++.++|+||++ |-++++||.++|.+. +. ++.+..+++|+.|++||+.+.-+
T Consensus 82 gEVv~g~V~~v~~~G~~v~~-Gp~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~ 153 (176)
T PTZ00162 82 DEVLDAIVTDVNKLGFFAQA-GPLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYD 153 (176)
T ss_pred CCEEEEEEEEEecceEEEEe-eCeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEec
Confidence 99999999999999999999 577899999999742 11 11235789999999999887543
No 213
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=96.90 E-value=0.00068 Score=79.58 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=70.8
Q ss_pred cccccccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEe
Q psy9769 638 SQVSLLNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYL 713 (1026)
Q Consensus 638 ~~~~~~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~l 713 (1026)
....+++|++||.+.|+|.++.++|.+|+++ -.-.|+++.+.++..+ .+.+++|+.+ +++|++||..+++|.|
T Consensus 649 ~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV--~v~V~~vD~~r~rI~L 725 (780)
T COG2183 649 GVESITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIV--KVKVIEVDTARKRIAL 725 (780)
T ss_pred hhhhHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEE--EEEEEEEecccCeeee
Confidence 3456678999999999999999999999994 6789999999999876 6789999999 9999999999999999
Q ss_pred echhh
Q psy9769 714 SCNEA 718 (1026)
Q Consensus 714 S~k~~ 718 (1026)
|++..
T Consensus 726 smr~~ 730 (780)
T COG2183 726 SMRLD 730 (780)
T ss_pred Eeecc
Confidence 99985
No 214
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=96.89 E-value=0.0024 Score=64.02 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=58.0
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeec-----
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVC----- 705 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd----- 705 (1026)
..|++++|+|+++.++|++|++ +.+.|+++.+++.... ...|..|+++ ++||+.+|
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~l--g~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V--rvrV~~v~~~~~~ 155 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSL--GPFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKV--RARIVALSLKDRR 155 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEe--CCceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEE--EEEEEEEEccCCC
Confidence 3699999999999999999999 6799988666655322 2468999999 99999999
Q ss_pred cccceEEeechhh
Q psy9769 706 PRHFHVYLSCNEA 718 (1026)
Q Consensus 706 ~~~~~v~lS~k~~ 718 (1026)
|+.+++.+|+|+.
T Consensus 156 ~~~~~I~lt~k~~ 168 (179)
T TIGR00448 156 PEGSKIGLTMRQP 168 (179)
T ss_pred CCcceEEEEeccC
Confidence 7788999999985
No 215
>KOG3473|consensus
Probab=96.87 E-value=0.0032 Score=53.03 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=64.0
Q ss_pred EEEEE-CCEEEEEEhhhhhccChhhHhhhc---CCccCcccEEEecCCCHHHHHHHhhhe-----ecce------eeech
Q psy9769 68 VKLIA-DGVEVAAHKMVLAACSPYFHAMFI---SFEESKQERIVLKGVDPNALKLLIDYV-----YSCE------IYVTE 132 (1026)
Q Consensus 68 v~i~v-~~~~~~~Hr~vL~~~S~yF~~mf~---~~~e~~~~~i~l~~~~~~~f~~~l~~~-----Ytg~------~~i~~ 132 (1026)
|+++. +|..|-..|-+ |.-|+-.|+||+ -+.+...+++.+++++..+++.+.+|+ |++. .+|++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 66665 46777776654 556999999999 367888889999999999999999988 4443 46789
Q ss_pred hhHHHHHHHHHhcCc
Q psy9769 133 ENVQMLLPAANLLQL 147 (1026)
Q Consensus 133 ~~v~~ll~~A~~l~l 147 (1026)
+.+++||.+|++|.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999999999864
No 216
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=96.84 E-value=0.003 Score=70.02 Aligned_cols=68 Identities=12% Similarity=0.219 Sum_probs=57.6
Q ss_pred CCCcEEEEEEEEEecceEEEEeC---C--CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCC-----eeeechh
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFD---G--DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDG-----ELLLTEA 1017 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~---~--~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~-----~~~~~~~ 1017 (1026)
..|++|+|+|.++...+++|.+. + +++|++|+++. -|.+.|++||.|+|.|.+|+.. .+.||-.
T Consensus 151 ~~GeIV~G~V~r~e~~~viv~l~~~~g~~~~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 151 LEDTVLTARVLRFERQSVIMAVSSGFGQPEVEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred hcCcEEEEEEEEEcCCCEEEEecccCCCcceEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 34999999999999999999983 3 49999999988 7889999999999999999876 3677755
Q ss_pred hhhh
Q psy9769 1018 DEKL 1021 (1026)
Q Consensus 1018 ~~~~ 1021 (1026)
..+|
T Consensus 225 ~p~l 228 (449)
T PRK12329 225 NAGL 228 (449)
T ss_pred CHHH
Confidence 5444
No 217
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.77 E-value=0.00058 Score=72.29 Aligned_cols=89 Identities=19% Similarity=0.329 Sum_probs=73.0
Q ss_pred EEEEEEhhhhhccChhhHhhhc-CCccC-cccEEEec-CCCHHHHHHHhhheecceeeechhhHHHHHHHHHhcCchhHH
Q psy9769 75 VEVAAHKMVLAACSPYFHAMFI-SFEES-KQERIVLK-GVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVR 151 (1026)
Q Consensus 75 ~~~~~Hr~vL~~~S~yF~~mf~-~~~e~-~~~~i~l~-~~~~~~f~~~l~~~Ytg~~~i~~~~v~~ll~~A~~l~l~~L~ 151 (1026)
+.|.|.+-+|...=.||+..+. ...++ ...+|.|. .-+-.+|+-+++|+....-.++++|+..+|..|++|+|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 6899999999999999999995 22222 22334443 467889999999999988889999999999999999999999
Q ss_pred hHHHHhhhcccC
Q psy9769 152 DACCDFLQCQLH 163 (1026)
Q Consensus 152 ~~c~~~l~~~l~ 163 (1026)
+.|..|+..+++
T Consensus 94 e~cl~y~~~~~~ 105 (317)
T PF11822_consen 94 EECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHhHH
Confidence 999998876643
No 218
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=96.70 E-value=0.0013 Score=79.90 Aligned_cols=72 Identities=11% Similarity=0.056 Sum_probs=64.9
Q ss_pred ccccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 643 LNLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 643 ~~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
..+++|+.+.|+|.++.++|++|++ ..+..|++|.+.+++.+ .+.|++|+.+ +++|+.+|+. +++.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei-~~~~~GllhiSels~~~v~~~~~v~kvGD~V--~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEI-LPGKDGLVHISEIADERVEKVEDVLKEGDEV--KVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEE-CCCCEEEEEeeeccCccccCccceeCCCCEE--EEEEEEECCC-CcEEEEEEec
Confidence 3478999999999999999999999 47899999999998866 5678999999 9999999998 9999999863
No 219
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=96.62 E-value=0.01 Score=50.78 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=54.5
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCC-eeeec
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDG-ELLLT 1015 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~-~~~~~ 1015 (1026)
++|+.|-|.|+.+...+-+|.+..--.|++|..++.-. -.+....|++||.|-|||.++|+. +..||
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~~~~eLt 72 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRDMEPELS 72 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCCCCeEEE
Confidence 34999999999999999999998888999999887432 122345699999999999999984 45554
No 220
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=96.54 E-value=0.0044 Score=68.02 Aligned_cols=113 Identities=15% Similarity=0.244 Sum_probs=78.4
Q ss_pred ccccccccccCCCcEEEEEEEEeeecccCceeeEEeeccccccc-------ccccccc--ccCcccccccccccccc-ee
Q psy9769 512 EEIPELSNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNE-------MYINTTL--ETGLVLPACVHSKEDHG-YL 581 (1026)
Q Consensus 512 ~~~~~~~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~-------~~~~~~l--~~G~~v~g~V~sv~d~g-~~ 581 (1026)
++......-+++||.+...+... .. ++..++.....+.+ ..-.+.+ +.|.+++|+|.+++++| ++
T Consensus 75 ~~A~~~d~~~~vGD~I~~~I~~~---~f--gR~aaq~aKqvi~Qkire~ere~i~~ey~~k~GeiV~G~V~~v~~~g~v~ 149 (341)
T TIGR01953 75 EDAREIDPDVQIGDEVKKEIPPE---NF--GRIAAQTAKQVILQKIREAERERVYDEFSSKEGEIISGTVKRVNRRGNLY 149 (341)
T ss_pred HHHHhhccccccCCEEEEEeccc---CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCcEE
Confidence 33444455689999998877422 22 22222222222211 2222344 58999999999999988 59
Q ss_pred eeecccceeeeeeccc------cccCceEEEEEeeeeeccceeEEEEechHHHHhh
Q psy9769 582 LDVGVKNTRAFIKYDS------VILGQIVTCMISKIKVAASMSILEVTLDEELIRS 631 (1026)
Q Consensus 582 v~~G~~~~~gf~~~~~------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~~ 631 (1026)
|++| +++||+|.++ +.+|+.+++.|.+++...+...+.||.....+..
T Consensus 150 VdiG--~~ea~LP~~E~ip~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~~~~v~ 203 (341)
T TIGR01953 150 VELG--KTEGILPKKEQIPGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTHPEFVK 203 (341)
T ss_pred EEEC--CeEEEecHHHcCCCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCcHHHHH
Confidence 9996 6899999754 8999999999999998766778899987655443
No 221
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=96.52 E-value=0.0042 Score=74.87 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=56.6
Q ss_pred cccCCCC--cEEEEEEEEEecceEEEEeC-CCceeeEeccccCc--ccc---cC-----c--ccccccCCEEEEEEEEEe
Q psy9769 944 VKHTKPG--RLVWGVLKEKMPGGVRVEFD-GDISGVFPTSAMSQ--ATR---TL-----V--YTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 944 ~~~~~~G--~~v~G~V~~i~~~G~fV~~~-~~i~Gl~~~~~ls~--~~~---~~-----~--~~~~~~G~~V~~~Vl~vd 1008 (1026)
|-+-++| ....|.|+.++++|+||++. ++++|+||.+.|.+ +.. .+ . ...|+.||.|+++|.+||
T Consensus 550 yl~~~~g~~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd 629 (639)
T TIGR02062 550 FLADKAAKNTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVR 629 (639)
T ss_pred HHhhccCCCcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEec
Confidence 4444665 49999999999999999995 48999999999965 211 11 1 126999999999999999
Q ss_pred CCeeeec
Q psy9769 1009 DGELLLT 1015 (1026)
Q Consensus 1009 ~~~~~~~ 1015 (1026)
..+..+.
T Consensus 630 ~~~~~i~ 636 (639)
T TIGR02062 630 METRSII 636 (639)
T ss_pred cccCcEe
Confidence 8887664
No 222
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0065 Score=61.49 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=65.4
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCccc----ccCcccccccCCEEEEEEEEEeC-Ceeeechhhhhhhcc
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQAT----RTLVYTRFVIDTVIVCQILKYED-GELLLTEADEKLHKF 1024 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~----~~~~~~~~~~G~~V~~~Vl~vd~-~~~~~~~~~~~~~~~ 1024 (1026)
|++|-|.|..+...+-.|.+..-..+++|.+++.+.. ..+....|.+||.|.|+|.++|+ .+..|+..+++|.|+
T Consensus 65 gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~~~~~L~~k~~~~GkL 144 (239)
T COG1097 65 GDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDRDGEVELTLKDEGLGKL 144 (239)
T ss_pred CCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccCCCceEEEeecCCCccc
Confidence 9999999999999999999998899999999996543 34577889999999999999998 466777788887775
No 223
>KOG3409|consensus
Probab=96.51 E-value=0.0057 Score=57.56 Aligned_cols=73 Identities=18% Similarity=0.315 Sum_probs=59.5
Q ss_pred CCcEEEEEEEEEecceEEEEe--------CCCceeeEeccccCc--ccccCcccccccCCEEEEEEEE-EeCCeeeechh
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEF--------DGDISGVFPTSAMSQ--ATRTLVYTRFVIDTVIVCQILK-YEDGELLLTEA 1017 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~--------~~~i~Gl~~~~~ls~--~~~~~~~~~~~~G~~V~~~Vl~-vd~~~~~~~~~ 1017 (1026)
.|+||+.+|.++...-+=|.+ .+...|+||+.++.. +...++-+.|++||.|.|+|++ =|..+..||-|
T Consensus 68 ~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LTtA 147 (193)
T KOG3409|consen 68 VGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLTTA 147 (193)
T ss_pred cCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEEEe
Confidence 399999999999887777665 346899999999964 4445677889999999999999 56788889877
Q ss_pred hhhh
Q psy9769 1018 DEKL 1021 (1026)
Q Consensus 1018 ~~~~ 1021 (1026)
+..|
T Consensus 148 eneL 151 (193)
T KOG3409|consen 148 ENEL 151 (193)
T ss_pred cccc
Confidence 6654
No 224
>KOG1987|consensus
Probab=96.51 E-value=0.0013 Score=72.58 Aligned_cols=119 Identities=22% Similarity=0.107 Sum_probs=100.6
Q ss_pred CEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhheecceeeechhhHH---HHHHHHHhcCchh
Q psy9769 74 GVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQ---MLLPAANLLQLTD 149 (1026)
Q Consensus 74 ~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~---~ll~~A~~l~l~~ 149 (1026)
+..+.+|+.+++++|+.|+.|+. ...+.....+.+.+.++..++.+..|.|...-.-..+... .++.+|..++.+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 45599999999999999999998 5555555566888999999999999999965544444443 8888999999999
Q ss_pred HHhHHHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhh
Q psy9769 150 VRDACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIEL 192 (1026)
Q Consensus 150 L~~~c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~ 192 (1026)
|+..|...+...+...++...+..+..+....+...+..++..
T Consensus 189 lk~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 231 (297)
T KOG1987|consen 189 LKLACMPVLLSLIETLNVSQSLQEASNYDLKEAKSALTYVIAA 231 (297)
T ss_pred HHHHHHHHHHHHHHhhhhcccHHHhchhHHHHHHHHHHHHHhc
Confidence 9999999999998888888888888888888888888888776
No 225
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.0016 Score=73.00 Aligned_cols=69 Identities=13% Similarity=0.251 Sum_probs=60.7
Q ss_pred CCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 941 LTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 941 ~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
--+++|+..|..+.|+|.++..||+||++...+.||+|.++++. + ..|.+|+.+-++|..|-+.+.-++
T Consensus 114 ~c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~----~--~~~~vgdeiiV~v~~vr~~~geid 182 (715)
T COG1107 114 SCTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGG----D--PDYAVGDEIIVQVSDVRPEKGEID 182 (715)
T ss_pred ccchhhcccceeeeccccchhhhcceeecChhhhccccccccCC----C--CCCCCCCeEEEEeeccCCCCCccc
Confidence 34788899999999999999999999999999999999999975 2 238899999999999998866554
No 226
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=96.40 E-value=0.0057 Score=67.55 Aligned_cols=70 Identities=10% Similarity=0.170 Sum_probs=58.6
Q ss_pred cccc--ccCcccccccccccccceeeeecccceeeeeeccc------cccCceEEEEEeeeeeccceeEEEEechHHHHh
Q psy9769 559 NTTL--ETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS------VILGQIVTCMISKIKVAASMSILEVTLDEELIR 630 (1026)
Q Consensus 559 ~~~l--~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~------~~~G~~v~~~v~~~~~~~~~~~i~ls~~~~~~~ 630 (1026)
...+ +.|.+++|+|.+++++|++|++| +++||+|.++ +++|+.++|.|.+++...+...+.||.....+.
T Consensus 127 ~~ef~~k~GeiV~G~V~~~~~~~~~Vdlg--~vEa~LP~~E~ip~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt~p~~v 204 (362)
T PRK12327 127 YNEFSEREGDIVTGVVQRRDNRFVYVNLG--KIEAVLPPAEQIPGETYKHGDRIKVYVVKVEKTTKGPQIFVSRTHPGLV 204 (362)
T ss_pred HHHHHHhcCCEEEEEEEEEeCCcEEEEeC--CeEEEecHHHcCCCCCCCCCCEEEEEEEEEecCCCCCeEEEEeCCHHHH
Confidence 3455 78999999999999999999996 3899999643 899999999999999876677888888654443
No 227
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=96.39 E-value=0.089 Score=55.46 Aligned_cols=129 Identities=11% Similarity=0.147 Sum_probs=81.3
Q ss_pred CcEEEEEECCCCcEEEcCCCCcc-ccceeeEEECCEEEEEeccCC-----CeEEEeCCCCeEEe-CCCCcCCcc----ee
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTR-RCRAGLVFLHEKVYAVGGFNG-----SLRVYDPSTNEWSS-APPMEARRS----TL 401 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~-----~~~~yd~~~~~W~~-~~~~p~~r~----~~ 401 (1026)
...++.|+..++.|+.+...|.. ......+.++|.+|-+.-... .+..||..+.+|.. ++ +|..+. ..
T Consensus 69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~ 147 (230)
T TIGR01640 69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYL 147 (230)
T ss_pred CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccce
Confidence 35688999999999998743322 122237788999998874332 47779999999995 54 343332 34
Q ss_pred EEEEECCEEEEEeccCCCCCCCEEEEEE-CCCCcEEEccCCC---CCcc----eeEEEEECCEEEEEeCC
Q psy9769 402 GVAVLNSLIYAVGGFDGSSGLNSAEVYD-PSTEKWNMIAPMS---TRRS----SVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 402 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~lyv~GG~ 463 (1026)
..+.++|+|.++...... ..-++|..+ -....|++.-.++ .+.. ....+..+++|++..+.
T Consensus 148 ~L~~~~G~L~~v~~~~~~-~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~ 216 (230)
T TIGR01640 148 SLINYKGKLAVLKQKKDT-NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCED 216 (230)
T ss_pred EEEEECCEEEEEEecCCC-CcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCC
Confidence 567789999888654321 124666664 3356798754332 1111 13345567888887653
No 228
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=96.37 E-value=0.0028 Score=56.75 Aligned_cols=65 Identities=9% Similarity=0.155 Sum_probs=55.4
Q ss_pred eEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeecccc-----c
Q psy9769 650 KVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRH-----F 709 (1026)
Q Consensus 650 ~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~-----~ 709 (1026)
++.|+|.++.++|++|.+ .++.||++.++++..+ ...|++|+.+ +++|+.+|++. +
T Consensus 2 vv~g~V~~i~~~GifV~l--~~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v--~vkI~~vd~~~~~~~~~ 77 (99)
T cd04460 2 VVEGEVVEVVDFGAFVRI--GPVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVV--RARIVAVSLKERRPRES 77 (99)
T ss_pred EEEEEEEEEEeccEEEEE--cCeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEE--EEEEEEEeHHHCcCCCc
Confidence 578999999999999999 3699999888877544 1568999999 99999999874 5
Q ss_pred eEEeechhh
Q psy9769 710 HVYLSCNEA 718 (1026)
Q Consensus 710 ~v~lS~k~~ 718 (1026)
++.||+++.
T Consensus 78 ~i~ls~k~~ 86 (99)
T cd04460 78 KIGLTMRQP 86 (99)
T ss_pred eEEEEEecC
Confidence 899999984
No 229
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=96.10 E-value=0.006 Score=63.88 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=60.0
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh--------hhhhcccccccccceeeeeccccceEEeechh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY--------NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNE 717 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~--------~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~ 717 (1026)
.+|++|.|+|.++.++|+++++ ...+.|+++.+.+++.+ .+.|++|+.+ .|||+.+|+.++ +.||++.
T Consensus 62 ~vGDiViG~V~~i~~~~~~vdI-~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV--~akV~~i~~~~~-~~LS~k~ 137 (235)
T PRK04163 62 KVGDLVIGKVTDVTFSGWEVDI-NSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYI--IAKVKDVDRTRD-VVLTLKG 137 (235)
T ss_pred CCCCEEEEEEEEEeCceEEEEe-CCCceeEEEHHHcCCCccccchhhhHhhCCCCCEE--EEEEEEECCCCc-EEEEEcC
Confidence 7899999999999999999999 46799999999988763 4568999999 999999998754 9999886
No 230
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=96.04 E-value=0.01 Score=72.89 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=59.3
Q ss_pred ccccCCCCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCccc-----------ccCcccccccCCEEEEEEEEEeCC
Q psy9769 943 SVKHTKPGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQAT-----------RTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 943 ~~~~~~~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~-----------~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
.|-..++|+...|+|.+++.+|+||++++ +++|+||.+.|.++. .+.....|+.||.|+++|+++|..
T Consensus 616 ~~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~ 695 (706)
T COG0557 616 EYMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLD 695 (706)
T ss_pred HHHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEccc
Confidence 45566889999999999999999999988 599999999998421 223345799999999999999886
Q ss_pred eeee
Q psy9769 1011 ELLL 1014 (1026)
Q Consensus 1011 ~~~~ 1014 (1026)
...+
T Consensus 696 ~~~i 699 (706)
T COG0557 696 ERKI 699 (706)
T ss_pred ccce
Confidence 5543
No 231
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=95.99 E-value=0.26 Score=56.74 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=93.7
Q ss_pred CccCCcEEEEEcCCCCCCCcEEEEEECCCC--cEEEcCCCC--------ccccceeeEEECCEEEEEeccCCCeEEEeCC
Q psy9769 315 PLRVPKVMLVVGGQAPKAIRSVECYDFKTE--RWQSVAEMP--------TRRCRAGLVFLHEKVYAVGGFNGSLRVYDPS 384 (1026)
Q Consensus 315 ~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~--~W~~~~~~p--------~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~ 384 (1026)
++..++.+|+.+.. ..+++||..+. .|+.-.+-. .++...+.++.++.+|+ |+.++.++.+|..
T Consensus 65 Pvv~~~~vy~~~~~-----g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v-~~~~g~l~ald~~ 138 (394)
T PRK11138 65 PAVAYNKVYAADRA-----GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYI-GSEKGQVYALNAE 138 (394)
T ss_pred cEEECCEEEEECCC-----CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEE-EcCCCEEEEEECC
Confidence 34467888887642 37899998755 487532110 11233445677889986 5667889999998
Q ss_pred CCe--EEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCCC--cceeEEEEECCEEE
Q psy9769 385 TNE--WSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMSTR--RSSVGVGVLNGCLY 458 (1026)
Q Consensus 385 ~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~--r~~~~~~~~~~~ly 458 (1026)
+.+ |+.-.+ .+ ...+.++.++.+|+..+. ..++.+|+.+++ |+.-...|.. +...+-++.++.+|
T Consensus 139 tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~ 209 (394)
T PRK11138 139 DGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAI 209 (394)
T ss_pred CCCCcccccCC--Cc-eecCCEEECCEEEEECCC------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEE
Confidence 764 875322 11 122234568888875431 469999998776 8875443321 22223345678888
Q ss_pred EEeCCCceeeEEcCcc--cEEEe
Q psy9769 459 AENLDGRILGCVKEIT--DWGLI 479 (1026)
Q Consensus 459 v~GG~~~~~~~~~~~~--~W~~~ 479 (1026)
+.++.+....++..+. .|+.-
T Consensus 210 ~~~~~g~v~a~d~~~G~~~W~~~ 232 (394)
T PRK11138 210 VGGDNGRVSAVLMEQGQLIWQQR 232 (394)
T ss_pred EEcCCCEEEEEEccCChhhheec
Confidence 8777777777777653 38654
No 232
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=95.98 E-value=0.014 Score=52.84 Aligned_cols=79 Identities=27% Similarity=0.340 Sum_probs=59.3
Q ss_pred EEEEE-CCEEEEEEhhhhhccChhhHhhhc--CCccCcccEEEecCCCHHHHHHHhhheeccee----------------
Q psy9769 68 VKLIA-DGVEVAAHKMVLAACSPYFHAMFI--SFEESKQERIVLKGVDPNALKLLIDYVYSCEI---------------- 128 (1026)
Q Consensus 68 v~i~v-~~~~~~~Hr~vL~~~S~yF~~mf~--~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~---------------- 128 (1026)
++++. +|..|.+.+.+.. .|.-++.|+. +..+.....|.+++++..+++.+++|++.-.-
T Consensus 4 v~L~S~Dg~~f~v~~~~a~-~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~ 82 (104)
T smart00512 4 IKLISSDGEVFEVEREVAR-QSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDA 82 (104)
T ss_pred EEEEeCCCCEEEecHHHHH-HHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHH
Confidence 55654 6889999999875 7999999998 22222235899999999999999999964321
Q ss_pred ---eechhhHHHHHHHHHhcCc
Q psy9769 129 ---YVTEENVQMLLPAANLLQL 147 (1026)
Q Consensus 129 ---~i~~~~v~~ll~~A~~l~l 147 (1026)
.++.+.+.+|+.||++|++
T Consensus 83 ~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 83 EFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 1445578888888888864
No 233
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.97 E-value=0.15 Score=57.00 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=78.9
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCC----------CeEE--Ee----
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG----------SLRV--YD---- 382 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~----------~~~~--yd---- 382 (1026)
+.+|+.++.. ..+..||+.+..-...|.|+.+.....++.++++||++..... ..++ |+
T Consensus 76 gskIv~~d~~-----~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~ 150 (342)
T PF07893_consen 76 GSKIVAVDQS-----GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPD 150 (342)
T ss_pred CCeEEEEcCC-----CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccc
Confidence 5667666543 3478999999998888888888777788888999999987531 3333 44
Q ss_pred ----CCCCeEEeCCCCcCCcce-------eEEEEE-CCEEEE-EeccCCCCCCCEEEEEECCCCcEEEccCC
Q psy9769 383 ----PSTNEWSSAPPMEARRST-------LGVAVL-NSLIYA-VGGFDGSSGLNSAEVYDPSTEKWNMIAPM 441 (1026)
Q Consensus 383 ----~~~~~W~~~~~~p~~r~~-------~~~~~~-~~~iyv-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 441 (1026)
.....|+.+|+.|..+.. .+-+++ +..||| .-|.. ...++||+.+.+|+...+-
T Consensus 151 ~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW 217 (342)
T PF07893_consen 151 DPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDW 217 (342)
T ss_pred cccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccce
Confidence 233468888876654432 233445 667888 33321 3589999999999999843
No 234
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.89 E-value=0.83 Score=48.14 Aligned_cols=144 Identities=24% Similarity=0.312 Sum_probs=89.6
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCCc--EEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCe--EE-eCC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTER--WQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WS-SAP 392 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~-~~~ 392 (1026)
.++.+|+..+ ...+++||+.+.+ |+.-. +.+-.. ..+..++.+|+..+ ++.++.+|..+.+ |+ ...
T Consensus 35 ~~~~v~~~~~-----~~~l~~~d~~tG~~~W~~~~--~~~~~~-~~~~~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 35 DGGRVYVASG-----DGNLYALDAKTGKVLWRFDL--PGPISG-APVVDGGRVYVGTS-DGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ETTEEEEEET-----TSEEEEEETTTSEEEEEEEC--SSCGGS-GEEEETTEEEEEET-TSEEEEEETTTSCEEEEEEE-
T ss_pred eCCEEEEEcC-----CCEEEEEECCCCCEEEEeec--cccccc-eeeecccccccccc-eeeeEecccCCcceeeeeccc
Confidence 4677777743 3589999997765 65432 232222 24778899988763 4488999977764 98 443
Q ss_pred CCcCC--cceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCCCcc--------eeEEEEECCEEEEE
Q psy9769 393 PMEAR--RSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMSTRRS--------SVGVGVLNGCLYAE 460 (1026)
Q Consensus 393 ~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~--------~~~~~~~~~~lyv~ 460 (1026)
..+.. +.....++.++.+|+... ...+..+|+++++ |+.-...+.... ....+..++.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVS 179 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEE
T ss_pred cccccccccccCceEecCEEEEEec------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEE
Confidence 32222 233344555777777654 2679999998776 876554433211 23334446899999
Q ss_pred eCCCceeeEEcCccc--E
Q psy9769 461 NLDGRILGCVKEITD--W 476 (1026)
Q Consensus 461 GG~~~~~~~~~~~~~--W 476 (1026)
.+.+....+|..+.. |
T Consensus 180 ~~~g~~~~~d~~tg~~~w 197 (238)
T PF13360_consen 180 SGDGRVVAVDLATGEKLW 197 (238)
T ss_dssp CCTSSEEEEETTTTEEEE
T ss_pred cCCCeEEEEECCCCCEEE
Confidence 988876666776654 8
No 235
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.78 E-value=0.038 Score=44.23 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=31.8
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCC
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
|++.+.+|+++.++|+|+.-.++-+=|+|.+++. +.+++||+|.+-|- .|.+
T Consensus 2 G~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY-~D~~ 53 (61)
T PF13509_consen 2 GQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVY-LDKE 53 (61)
T ss_dssp -------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEE-E-TT
T ss_pred CCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEE-ECCC
Confidence 8899999999999999999887789999999883 33789999998864 4543
No 236
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=95.73 E-value=0.03 Score=56.77 Aligned_cols=69 Identities=9% Similarity=0.111 Sum_probs=56.9
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeeccccc-
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRHF- 709 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~~- 709 (1026)
..|+++.|+|.++.+.|++|++ +.+.||++.++++..+ ...+..|+.+ ++||..+|...+
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~l--g~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~V--rvrV~~v~~~~~~ 155 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRI--GPVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVV--RARIVAVSLKERR 155 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEE--eCceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEE--EEEEEEEEcccCC
Confidence 4699999999999999999999 5799998777766432 2357899999 999999997643
Q ss_pred ----eEEeechhh
Q psy9769 710 ----HVYLSCNEA 718 (1026)
Q Consensus 710 ----~v~lS~k~~ 718 (1026)
++.+|+++.
T Consensus 156 ~~~~~I~ls~~~~ 168 (187)
T PRK08563 156 PRGSKIGLTMRQP 168 (187)
T ss_pred CCCCEEEEEecCC
Confidence 788888873
No 237
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.67 E-value=0.9 Score=47.87 Aligned_cols=138 Identities=20% Similarity=0.264 Sum_probs=87.9
Q ss_pred EEEEEECCCCc--EEEcCCCCcccccee--eEEECCEEEEEeccCCCeEEEeCCCCe--EEeCCCCcCCcceeEEEEECC
Q psy9769 335 SVECYDFKTER--WQSVAEMPTRRCRAG--LVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSAPPMEARRSTLGVAVLNS 408 (1026)
Q Consensus 335 ~~~~yd~~~~~--W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~ 408 (1026)
.+.++|+.+.+ |+.- +..+..+.. .+..++.+|+. ..++.+++||+.+.+ |+.-. +.+-... .+..++
T Consensus 4 ~l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~~ 77 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVA-SGDGNLYALDAKTGKVLWRFDL--PGPISGA-PVVDGG 77 (238)
T ss_dssp EEEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEE-ETTSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEETT
T ss_pred EEEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEE-cCCCEEEEEECCCCCEEEEeec--cccccce-eeeccc
Confidence 57788987654 7762 222233322 34478899887 456789999998876 76543 2222222 477899
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCc--EE-EccCCCCC--cceeEEEEECCEEEEEeCCCceeeEEcCccc--EEEeec
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEK--WN-MIAPMSTR--RSSVGVGVLNGCLYAENLDGRILGCVKEITD--WGLIIE 481 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~--W~-~~~~~p~~--r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~--W~~~~~ 481 (1026)
.+|+..+. +.+.++|..+++ |+ .....+.. +.....++.++.+|+....+.+..+|..+.. |..-..
T Consensus 78 ~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 78 RVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp EEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred ccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 99888631 389999987765 98 44433322 3344555568888888878888899977644 888766
Q ss_pred CCC
Q psy9769 482 LPN 484 (1026)
Q Consensus 482 lP~ 484 (1026)
.|.
T Consensus 152 ~~~ 154 (238)
T PF13360_consen 152 EPR 154 (238)
T ss_dssp TT-
T ss_pred CCC
Confidence 654
No 238
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=95.55 E-value=0.0088 Score=72.68 Aligned_cols=65 Identities=8% Similarity=0.034 Sum_probs=57.5
Q ss_pred cccCCceEEeeeecccCCcceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEE
Q psy9769 644 NLVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVY 712 (1026)
Q Consensus 644 ~l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~ 712 (1026)
..+.|..+.|+|+++.++|++|++ ..+..||+|.+++++.+ .+.|++|+++ +++|+.+|+ ++++.
T Consensus 615 ~~~~G~i~~G~V~~I~~~GafVei-~~g~~GllHiSei~~~~v~~~~~~~kvGD~V--~VkVi~id~-~gki~ 683 (684)
T TIGR03591 615 EPEVGKIYEGKVVRIMDFGAFVEI-LPGKDGLVHISEIANERVEKVEDVLKEGDEV--KVKVLEIDK-QGRIK 683 (684)
T ss_pred ccccCcEEEEEEEEEeCCEEEEEE-CCCcEEEEEHHHcCCCcccChhhccCCCCEE--EEEEEEECC-CCCcc
Confidence 468899999999999999999999 47899999999998865 5679999999 999999998 55554
No 239
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=95.46 E-value=0.014 Score=56.53 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=58.4
Q ss_pred CCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeecccc---
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRH--- 708 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~--- 708 (1026)
.|.+|.|.|.++.+.|++|.+ +.++||+|.+++...+ +..+.+|..+ +|||+.++...
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~i--gp~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~V--R~RIv~~s~~~~~~ 156 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRI--GPLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKV--RARIVGVSLKSRRP 156 (183)
T ss_pred cccEEEEEEEEEeecceEEEe--ccccccccHhhccCcccccCcccceeeecccceEEecCCEE--EEEEEEEecccCcc
Confidence 488999999999999999999 7999999988887662 2368899999 99999988655
Q ss_pred --ceEEeechhhh
Q psy9769 709 --FHVYLSCNEAL 719 (1026)
Q Consensus 709 --~~v~lS~k~~l 719 (1026)
.++.+++++..
T Consensus 157 ~~~~I~lTmrq~~ 169 (183)
T COG1095 157 RESKIGLTMRQPG 169 (183)
T ss_pred ccceEEEEecccc
Confidence 57888888853
No 240
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.44 E-value=0.13 Score=53.22 Aligned_cols=73 Identities=12% Similarity=0.024 Sum_probs=56.4
Q ss_pred CCCCcCCcceeEEEEE--CCE--EEEEeccCC--------------CCCCCEEEEEECCCCcEE--EccCCCCCcceeEE
Q psy9769 391 APPMEARRSTLGVAVL--NSL--IYAVGGFDG--------------SSGLNSAEVYDPSTEKWN--MIAPMSTRRSSVGV 450 (1026)
Q Consensus 391 ~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~--------------~~~~~~v~~yd~~~~~W~--~~~~~p~~r~~~~~ 450 (1026)
+.+.|.+|++|++.++ .|| ..+|||..- -.+...|+..|++-+.++ .++.+....+.|-+
T Consensus 81 vGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvs 160 (337)
T PF03089_consen 81 VGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVS 160 (337)
T ss_pred cCCCCcccccceEEEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEE
Confidence 4689999999998765 443 778899521 012467888899888876 46677788889999
Q ss_pred EEECCEEEEEeCC
Q psy9769 451 GVLNGCLYAENLD 463 (1026)
Q Consensus 451 ~~~~~~lyv~GG~ 463 (1026)
.+-+|.+|++||-
T Consensus 161 lar~D~VYilGGH 173 (337)
T PF03089_consen 161 LARNDCVYILGGH 173 (337)
T ss_pred EecCceEEEEccE
Confidence 9999999999993
No 241
>KOG1067|consensus
Probab=95.35 E-value=0.016 Score=64.76 Aligned_cols=66 Identities=18% Similarity=0.308 Sum_probs=57.7
Q ss_pred eeEeeCceeeeeEeEEEEeeeEEEeccceeeeeccc-----ceeeCCccccccCcEEee-------cCeEEEehhhhhc
Q psy9769 870 AEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCEN-----EYVEGNKADIKVGDEVQA-------KNSIEVAFKSLYR 936 (1026)
Q Consensus 870 ~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~-----~~~~~~~~~~kvG~~v~~-------~~~i~ls~K~l~~ 936 (1026)
..+.-|-+.+++|+++.+||+||+|.+ +..|++|+ +++.+|...++|||++.. +..+.++.|+|+.
T Consensus 664 ~~l~~g~vy~~tIt~~rd~G~~V~l~p-~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ralLp 741 (760)
T KOG1067|consen 664 QDLEFGGVYTATITEIRDTGVMVELYP-MQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRALLP 741 (760)
T ss_pred cceEeeeEEEEEEeeecccceEEEecC-CchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhhcC
Confidence 456668889999999999999999999 99999999 678899999999999883 7778888888654
No 242
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.72 E-value=1.2 Score=51.18 Aligned_cols=146 Identities=15% Similarity=0.175 Sum_probs=88.1
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCC--cEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCe--EEeCCC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTE--RWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSAPP 393 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~ 393 (1026)
.++.+|+.+. ...++++|..+. .|+.-.+ .+ ...+-++.++.+|+. ..++.++.+|+.+.+ |+.-..
T Consensus 119 ~~~~v~v~~~-----~g~l~ald~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~-~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSE-----KGQVYALNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVH-TSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcC-----CCEEEEEECCCCCCcccccCC--Cc-eecCCEEECCEEEEE-CCCCEEEEEEccCCCEeeeecCC
Confidence 4667776432 247899998765 5875322 21 122345568888874 446689999998876 876443
Q ss_pred CcC--CcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCCC-----c---ceeEEEEECCEEEEEe
Q psy9769 394 MEA--RRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMSTR-----R---SSVGVGVLNGCLYAEN 461 (1026)
Q Consensus 394 ~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~-----r---~~~~~~~~~~~lyv~G 461 (1026)
.|. .+...+-++.++.+|+..+ + ..+..+|+.+++ |+.-...|.. | ...+-++.++.+|+.+
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 221 1222233456777777543 2 467888988765 8753222211 1 1123456799999988
Q ss_pred CCCceeeEEcCccc--EEE
Q psy9769 462 LDGRILGCVKEITD--WGL 478 (1026)
Q Consensus 462 G~~~~~~~~~~~~~--W~~ 478 (1026)
..+....+|..+.+ |+.
T Consensus 264 ~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 264 YNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred cCCeEEEEECCCCCEEEee
Confidence 77777777776633 865
No 243
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=94.60 E-value=0.068 Score=58.68 Aligned_cols=66 Identities=12% Similarity=0.326 Sum_probs=55.4
Q ss_pred ccCcccccccccccc-cceeeeecccceeeeeeccc------cccCceEEEEEeeeeeccc-eeEEEEechHHHHh
Q psy9769 563 ETGLVLPACVHSKED-HGYLLDVGVKNTRAFIKYDS------VILGQIVTCMISKIKVAAS-MSILEVTLDEELIR 630 (1026)
Q Consensus 563 ~~G~~v~g~V~sv~d-~g~~v~~G~~~~~gf~~~~~------~~~G~~v~~~v~~~~~~~~-~~~i~ls~~~~~~~ 630 (1026)
+.|.+++|+|.+++. .+++|++| +++|+||.++ |.+|+.++|.|.+++...+ ...+.||.....+.
T Consensus 137 ~~Geiv~g~V~r~~~~~~i~vdlg--~~ea~LP~~eqip~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~p~~v 210 (374)
T PRK12328 137 KVGKIVFGTVVRVDNEENTFIEID--EIRAVLPMKNRIKGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTSPKFL 210 (374)
T ss_pred hcCcEEEEEEEEEecCCCEEEEcC--CeEEEeCHHHcCCCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCCHHHH
Confidence 569999999999986 46899997 6899999755 9999999999999999866 57888888654443
No 244
>KOG2714|consensus
Probab=94.53 E-value=0.072 Score=58.19 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=66.2
Q ss_pred EEEEECCEEEEEEhhhhhccC--hhhHhhhc-CCccCccc--EEEecCCCHHHHHHHhhheecceeeechhhHHHHHH-H
Q psy9769 68 VKLIADGVEVAAHKMVLAACS--PYFHAMFI-SFEESKQE--RIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLP-A 141 (1026)
Q Consensus 68 v~i~v~~~~~~~Hr~vL~~~S--~yF~~mf~-~~~e~~~~--~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~~ll~-~ 141 (1026)
|.|.|+|+.|.-.+.-|+... .||.++++ .+.-.... .|-| +=+|+.|..+|+|+.||++++..-....++. -
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 778899999998888887655 69999998 55443333 2555 5799999999999999999986655555555 8
Q ss_pred HHhcCchhHHh
Q psy9769 142 ANLLQLTDVRD 152 (1026)
Q Consensus 142 A~~l~l~~L~~ 152 (1026)
|.+|++..|..
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999988876
No 245
>PRK11642 exoribonuclease R; Provisional
Probab=94.46 E-value=0.038 Score=68.35 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=61.5
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeeccccce
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRHFH 710 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~~~ 710 (1026)
..|..++|+|+++.++|++|.+...++.|+++.+++++.| ...|++|++| +++|..+|+.+++
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V--~VkV~~vD~~~rk 719 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRV--EVRVEAVNMDERK 719 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEE--EEEEEEeecCCCe
Confidence 5799999999999999999999655699999998887643 2469999999 9999999999999
Q ss_pred EEeechh
Q psy9769 711 VYLSCNE 717 (1026)
Q Consensus 711 v~lS~k~ 717 (1026)
|.+++..
T Consensus 720 I~f~l~~ 726 (813)
T PRK11642 720 IDFSLIS 726 (813)
T ss_pred EEEEEec
Confidence 9999854
No 246
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=94.32 E-value=0.049 Score=47.74 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=56.4
Q ss_pred cCCceEEeeeecccCCcceeecc-------ccceeeccCcccccchh------hhhhcccccccccceeeeeccccceEE
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLK-------NTQFKAFISPEAMSTAY------NAKYLTNKRVDLDCSVLYVCPRHFHVY 712 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~-------~~~~~gfi~~~~~~~~~------~~~~~~G~~~~~~~~Il~vd~~~~~v~ 712 (1026)
++|+.|.|+|+++....+.+++. ...+.|+++.+++.... .+.|.+|+-+ +|+|+.++.. +...
T Consensus 5 ~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV--~AkVis~~~~-~~~~ 81 (92)
T cd05791 5 KVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIV--RAKVISLGDA-SSYY 81 (92)
T ss_pred CCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEE--EEEEEEcCCC-CCcE
Confidence 68999999999999999999983 35678888877765433 4679999999 9999999874 4477
Q ss_pred eechh
Q psy9769 713 LSCNE 717 (1026)
Q Consensus 713 lS~k~ 717 (1026)
||.+.
T Consensus 82 Lst~~ 86 (92)
T cd05791 82 LSTAE 86 (92)
T ss_pred EEecC
Confidence 88765
No 247
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=94.30 E-value=0.047 Score=63.60 Aligned_cols=62 Identities=24% Similarity=0.261 Sum_probs=52.0
Q ss_pred eEeeCceeeeeEeEEEEeeeEEEeccceeeeecccce-----eeCCccccccCcEEee-------cCeEEEehhh
Q psy9769 871 EVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCENEY-----VEGNKADIKVGDEVQA-------KNSIEVAFKS 933 (1026)
Q Consensus 871 ~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~~-----~~~~~~~~kvG~~v~~-------~~~i~ls~K~ 933 (1026)
.+..|.+..|+|+++.+||+||.|.+ |-+|++|+.. +.+..+.+|+||++.. +.|+.|++|.
T Consensus 616 e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~dvlk~Gd~v~Vkv~~iD~~Gri~ls~~~ 689 (692)
T COG1185 616 EVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEIDKQGRIRLSIKA 689 (692)
T ss_pred hcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccceeecCceEEEEEeeecccCCccceehh
Confidence 45689999999999999999999999 9999999922 4455578899999773 6788888876
No 248
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.30 E-value=1.9 Score=49.31 Aligned_cols=146 Identities=15% Similarity=0.209 Sum_probs=86.1
Q ss_pred ccCCcEEEEEcCCCCCCCcEEEEEECCCCc--EEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCe--EEeC
Q psy9769 316 LRVPKVMLVVGGQAPKAIRSVECYDFKTER--WQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSA 391 (1026)
Q Consensus 316 ~~~~~~i~v~GG~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~ 391 (1026)
...++.+|+.+.. ..+++||+.+.+ |+.-.+ .+ ...+.++.++.+|+ |+.++.++.+|+.+.+ |+.-
T Consensus 62 ~v~~~~v~v~~~~-----g~v~a~d~~tG~~~W~~~~~--~~-~~~~p~v~~~~v~v-~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 62 AVAGGKVYAADAD-----GTVVALDAETGKRLWRVDLD--ER-LSGGVGADGGLVFV-GTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred EEECCEEEEECCC-----CeEEEEEccCCcEeeeecCC--CC-cccceEEcCCEEEE-EcCCCEEEEEECCCCcEeeeec
Confidence 3456777766532 469999987654 874322 11 12234455677775 5667889999987764 8753
Q ss_pred CCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCC--CcceeEEEEECCEEEEEeCCCcee
Q psy9769 392 PPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMST--RRSSVGVGVLNGCLYAENLDGRIL 467 (1026)
Q Consensus 392 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~ 467 (1026)
.+ .. ...+.+..++.+|+..+ ...++++|+.+++ |+.-...+. .+...+.++.++.+|+....+.+.
T Consensus 133 ~~--~~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ 203 (377)
T TIGR03300 133 LS--SE-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLV 203 (377)
T ss_pred cC--ce-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEE
Confidence 22 11 12223446788877543 1468999998764 875443221 122334456677776655556777
Q ss_pred eEEcCcc--cEEEe
Q psy9769 468 GCVKEIT--DWGLI 479 (1026)
Q Consensus 468 ~~~~~~~--~W~~~ 479 (1026)
.+|..+. .|+.-
T Consensus 204 ald~~tG~~~W~~~ 217 (377)
T TIGR03300 204 ALDLQTGQPLWEQR 217 (377)
T ss_pred EEEccCCCEeeeec
Confidence 7776553 38654
No 249
>KOG1724|consensus
Probab=94.10 E-value=0.097 Score=50.66 Aligned_cols=90 Identities=22% Similarity=0.282 Sum_probs=70.5
Q ss_pred ECCEEEEEEhhhhhccChhhHhhhc--CCccCcccEEEecCCCHHHHHHHhhheeccee---------------------
Q psy9769 72 ADGVEVAAHKMVLAACSPYFHAMFI--SFEESKQERIVLKGVDPNALKLLIDYVYSCEI--------------------- 128 (1026)
Q Consensus 72 v~~~~~~~Hr~vL~~~S~yF~~mf~--~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~--------------------- 128 (1026)
.+|+.|.+-..++. .|.-+..++. +..... ..|.|++++..+|..++.|++.-.-
T Consensus 12 sDG~~f~ve~~~a~-~s~~i~~~~~~~~~~~~~-~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 12 SDGEIFEVEEEVAR-QSQTISAHMIEDGCADEN-DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred cCCceeehhHHHHH-HhHHHHHHHHHcCCCccC-CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 36888988887776 5888888887 322222 5799999999999999999987321
Q ss_pred ----eechhhHHHHHHHHHhcCchhHHhHHHHhhhcccC
Q psy9769 129 ----YVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLH 163 (1026)
Q Consensus 129 ----~i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~ 163 (1026)
.++..++.+|+.||++|+++.|...|++.+..++.
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 12345789999999999999999999998877653
No 250
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.10 E-value=2.2 Score=48.67 Aligned_cols=144 Identities=23% Similarity=0.282 Sum_probs=86.6
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCC--cEEEcCCCCc--cccceeeEEECCEEEEEeccCCCeEEEeCCCCe--EEeC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTE--RWQSVAEMPT--RRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSA 391 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~--~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~ 391 (1026)
.++.+|+..+ ...++++|+.+. .|+.-...+. .+...+.++.++.+| +|..++.+..+|+.+.+ |+.-
T Consensus 144 ~~~~v~v~~~-----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 144 ANGLVVVRTN-----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred ECCEEEEECC-----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EECCCCEEEEEEccCCCEeeeec
Confidence 3566666533 246899999765 4775432221 123344556677654 56666789999998764 8643
Q ss_pred CCCcCCc--------ceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCCCcceeEEEEECCEEEEEe
Q psy9769 392 PPMEARR--------STLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMSTRRSSVGVGVLNGCLYAEN 461 (1026)
Q Consensus 392 ~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~G 461 (1026)
...+..+ ...+.+..++.+|+.+. + ..+.+||+.+++ |+.-. + ...+.+..++++|+..
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~-~-----g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVVDGGQVYAVSY-Q-----GRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTD 286 (377)
T ss_pred cccCCCCCchhhhhccCCccEEECCEEEEEEc-C-----CEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEEC
Confidence 2222111 11233456888888643 1 468999998764 86531 1 1223446789999988
Q ss_pred CCCceeeEEcCcc--cEEE
Q psy9769 462 LDGRILGCVKEIT--DWGL 478 (1026)
Q Consensus 462 G~~~~~~~~~~~~--~W~~ 478 (1026)
..+.+..++..+. .|+.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKN 305 (377)
T ss_pred CCCeEEEEECCCCcEEEcc
Confidence 7777777777653 3765
No 251
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.02 E-value=0.19 Score=40.41 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=44.3
Q ss_pred EEEEE-CCEEEEEEhhhhhccChhhHhhhcCCccCcccEEEecCCCHHHHHHHhhheec
Q psy9769 68 VKLIA-DGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDYVYS 125 (1026)
Q Consensus 68 v~i~v-~~~~~~~Hr~vL~~~S~yF~~mf~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt 125 (1026)
|+|+. +|+.|.+.+.++. .|..++.|+.+...... .|.+++++...++.+++|++.
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~-~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE-PIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT-EEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc-ccccCccCHHHHHHHHHHHHh
Confidence 45554 6899999998887 79999999984333322 899999999999999999964
No 252
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.85 E-value=0.76 Score=49.38 Aligned_cols=103 Identities=20% Similarity=0.343 Sum_probs=65.8
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEE-CCEEEEEeccC------CCeEEEeCCCCeEEeCCC-----CcCCcce
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFL-HEKVYAVGGFN------GSLRVYDPSTNEWSSAPP-----MEARRST 400 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~------~~~~~yd~~~~~W~~~~~-----~p~~r~~ 400 (1026)
-..+..||+.+.+|..+..--... -.++... ++.+|+.|-.. ..+-.||..+++|+.++. +|.+...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 467889999999999876532221 1233334 67888877432 246679999999988765 3444322
Q ss_pred eEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccC
Q psy9769 401 LGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP 440 (1026)
Q Consensus 401 ~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 440 (1026)
...... .+.+|+.|.. ......+..|| ..+|..+..
T Consensus 94 ~~~~~~d~~~~~~aG~~--~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRS--ANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEeeccCCceEEEecee--cCCCceEEEEc--CCceEeccc
Confidence 222222 3468888776 22346777886 678998875
No 253
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=93.81 E-value=0.091 Score=58.65 Aligned_cols=68 Identities=15% Similarity=0.080 Sum_probs=55.7
Q ss_pred ccCcccccccccccccceeeee----cccceeeeeeccc------cccCceEEEEEeeeeecc-ceeEEEEechHHHHh
Q psy9769 563 ETGLVLPACVHSKEDHGYLLDV----GVKNTRAFIKYDS------VILGQIVTCMISKIKVAA-SMSILEVTLDEELIR 630 (1026)
Q Consensus 563 ~~G~~v~g~V~sv~d~g~~v~~----G~~~~~gf~~~~~------~~~G~~v~~~v~~~~~~~-~~~~i~ls~~~~~~~ 630 (1026)
+.|.+|+|+|.+++.++++|++ |...++|+||.++ |++|+.++|.|.+++... +...|.||.....+.
T Consensus 151 ~~GeIV~G~V~r~e~~~viv~l~~~~g~~~~EaiLP~~Eqip~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt~p~lv 229 (449)
T PRK12329 151 LEDTVLTARVLRFERQSVIMAVSSGFGQPEVEAELPKREQLPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRANAGLV 229 (449)
T ss_pred hcCcEEEEEEEEEcCCCEEEEecccCCCcceEEEecHHHcCCCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcCCHHHH
Confidence 4699999999999999999998 3335899999754 999999999999998873 566788887554433
No 254
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=93.58 E-value=0.067 Score=66.13 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=58.8
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeeccccce
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRHFH 710 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~~~ 710 (1026)
..|..++|+|.++.++|++|.+...++.|+++.++++..+ ...|++|+++ +++|..+|+.+++
T Consensus 626 ~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V--~Vkv~~vd~~~~~ 703 (709)
T TIGR02063 626 KIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRV--KVRVVKADLDTGK 703 (709)
T ss_pred cCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEE--EEEEEEEecccCe
Confidence 5799999999999999999999533799999988887432 2468999999 9999999999999
Q ss_pred EEeec
Q psy9769 711 VYLSC 715 (1026)
Q Consensus 711 v~lS~ 715 (1026)
+.+++
T Consensus 704 I~~~l 708 (709)
T TIGR02063 704 IDFEL 708 (709)
T ss_pred EEEEE
Confidence 99875
No 255
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=93.21 E-value=0.087 Score=64.22 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=59.6
Q ss_pred cCCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeeccccce
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRHFH 710 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~~~ 710 (1026)
..|..++|+|.++.++|++|.+...++.|+++.+.+++.+ ...|++|+++ +++|..+|+.+++
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V--~Vki~~vd~~~~~ 648 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRV--TVKLTEVNMETRS 648 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEE--EEEEEEEecccCe
Confidence 5799999999999999999999546799999888887643 2569999999 9999999999999
Q ss_pred EEeec
Q psy9769 711 VYLSC 715 (1026)
Q Consensus 711 v~lS~ 715 (1026)
+.+++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 98875
No 256
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=93.19 E-value=0.24 Score=56.19 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=95.8
Q ss_pred eeEeeCceeeeeEeEEEEeeeEEEeccceeeeecccceeeCCccccccCcEEee--------cCeEEEehhhh-------
Q psy9769 870 AEVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCENEYVEGNKADIKVGDEVQA--------KNSIEVAFKSL------- 934 (1026)
Q Consensus 870 ~~~~~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~~~~~~~~~~kvG~~v~~--------~~~i~ls~K~l------- 934 (1026)
..+.+|....|+|..++.||+||++++ -+.|++|..-..+ ...+.+|+++-. +..|.+....+
T Consensus 118 ~Dve~g~~Y~g~v~~v~~~GvFv~Ln~-~v~GL~~~~d~~~-~~~~~vgdeiiV~v~~vr~~~geidf~~~~~~~Y~~~~ 195 (715)
T COG1107 118 EDVEAGKYYKGIVSRVEKYGVFVELNS-HVRGLIHRRDLGG-DPDYAVGDEIIVQVSDVRPEKGEIDFEPVGLDRYREVQ 195 (715)
T ss_pred hhcccceeeeccccchhhhcceeecCh-hhhccccccccCC-CCCCCCCCeEEEEeeccCCCCCccceeecCCccchhhh
Confidence 456789999999999999999999999 8999999854323 456889998541 34444433322
Q ss_pred hcccCC---CCccccCCCCcE--EEEEEEEEecce---EEEEeCCCceeeEeccccCcc-cccCcccccccCCEEEEEEE
Q psy9769 935 YRIAQP---LTSVKHTKPGRL--VWGVLKEKMPGG---VRVEFDGDISGVFPTSAMSQA-TRTLVYTRFVIDTVIVCQIL 1005 (1026)
Q Consensus 935 ~~~~~~---~~~~~~~~~G~~--v~G~V~~i~~~G---~fV~~~~~i~Gl~~~~~ls~~-~~~~~~~~~~~G~~V~~~Vl 1005 (1026)
+++..| +..+++ ..|+. +.|.|+.|...+ +| .+.++ .|.++...+... -...|. ..+|+.|.+ |=
T Consensus 196 ~~ke~~r~~i~~id~-~ig~tV~I~GeV~qikqT~GPTVF-tltDe-tg~i~aAAFe~aGvRAyP~--IevGdiV~V-iG 269 (715)
T COG1107 196 VEKELPRTLIDDLDE-MIGKTVRIEGEVTQIKQTSGPTVF-TLTDE-TGAIWAAAFEEAGVRAYPE--IEVGDIVEV-IG 269 (715)
T ss_pred hhhhcccccHHHHHh-hcCceEEEEEEEEEEEEcCCCEEE-EEecC-CCceehhhhccCCcccCCC--CCCCceEEE-EE
Confidence 122333 233333 45776 479999987766 55 55444 689998887653 234454 789999975 45
Q ss_pred EEeCCeeeechhhhhh
Q psy9769 1006 KYEDGELLLTEADEKL 1021 (1026)
Q Consensus 1006 ~vd~~~~~~~~~~~~~ 1021 (1026)
+|+..+.+|--+.+.+
T Consensus 270 ~V~~r~g~lQiE~~~m 285 (715)
T COG1107 270 EVTRRDGRLQIEIEAM 285 (715)
T ss_pred EEeecCCcEEEeehhh
Confidence 6777777774333333
No 257
>KOG1665|consensus
Probab=93.11 E-value=0.25 Score=48.92 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=68.4
Q ss_pred cEEEEECCEEEEEEhhhhhcc--ChhhHhhhc--C-C-ccCcccEEEecCCCHHHHHHHhhheecceeee-chhhHHHHH
Q psy9769 67 DVKLIADGVEVAAHKMVLAAC--SPYFHAMFI--S-F-EESKQERIVLKGVDPNALKLLIDYVYSCEIYV-TEENVQMLL 139 (1026)
Q Consensus 67 Dv~i~v~~~~~~~Hr~vL~~~--S~yF~~mf~--~-~-~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i-~~~~v~~ll 139 (1026)
=|.+.++|+.|..-.--|..+ -....+||. + + .+..+..+-| +=+|..|+.+|+|+..|.+.. +.-++.+++
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI-DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvL 88 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI-DRSPKYFEPILNYLRDGQIPSLSDIDCLGVL 88 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE-ccCchhhHHHHHHHhcCceeecCCccHHHHH
Confidence 477888999987766655554 335778998 3 2 3333344444 679999999999999999864 556899999
Q ss_pred HHHHhcCchhHHhHHHH
Q psy9769 140 PAANLLQLTDVRDACCD 156 (1026)
Q Consensus 140 ~~A~~l~l~~L~~~c~~ 156 (1026)
+.|++|++-.|++..++
T Consensus 89 eeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 89 EEARFFQILSLKDHLED 105 (302)
T ss_pred HHhhHHhhHhHHhHHhh
Confidence 99999999999987776
No 258
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=93.05 E-value=0.15 Score=42.31 Aligned_cols=67 Identities=12% Similarity=-0.004 Sum_probs=56.1
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccC-cccccchh----hhhhcccccccccceeeeeccccceEEeec
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFIS-PEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~-~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
-..|+++. .|..+.+.|+.|.+..-+..|.|. .++++..+ ++.. +|+.. .++||.+|+.++-|-||.
T Consensus 14 P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e--~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 14 PNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTI--NVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCee--EEEEEEECCCCCEEEeEc
Confidence 35788888 999999999999997334999874 88888876 4445 99999 999999999999988874
No 259
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=92.60 E-value=0.13 Score=44.53 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=42.7
Q ss_pred CCceEEeeeecccCCcceeeccccceeeccCcccccch-----------h----hhhhcccccccccceeeeeccccc
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTA-----------Y----NAKYLTNKRVDLDCSVLYVCPRHF 709 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~-----------~----~~~~~~G~~~~~~~~Il~vd~~~~ 709 (1026)
.|+++.|+|+++.+.|+++++ +.+++|++...++.. | ...+..|..+ ++||+.+..+.+
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~--Gpl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~V--R~rV~~v~~~~~ 74 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEV--GPLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEV--RLKIIGTRVDAT 74 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEE--cCceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEE--EEEEEEEEEccC
Confidence 378999999999999999999 777777644444322 2 2236678888 888888765443
No 260
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.50 E-value=1.5 Score=47.18 Aligned_cols=102 Identities=14% Similarity=0.255 Sum_probs=61.7
Q ss_pred CeEEEeCCCCeEEeCCCCcCCcceeEEEEE-CCEEEEEeccCCCC-CCCEEEEEECCCCcEEEccC-----CCCCcceeE
Q psy9769 377 SLRVYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGGFDGSS-GLNSAEVYDPSTEKWNMIAP-----MSTRRSSVG 449 (1026)
Q Consensus 377 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-----~p~~r~~~~ 449 (1026)
.+-.||+.+.+|.....--.. .-.++... ++++|+.|-..-.. ....+-.||..+.+|+.++. +|.|.....
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 456799999999987653111 11233333 67888877654333 45778999999999988875 244432222
Q ss_pred EEEE-CCEEEEEeCC----CceeeEEcCcccEEEeec
Q psy9769 450 VGVL-NGCLYAENLD----GRILGCVKEITDWGLIIE 481 (1026)
Q Consensus 450 ~~~~-~~~lyv~GG~----~~~~~~~~~~~~W~~~~~ 481 (1026)
.... .+.+++.|.. ..+..| +..+|..+..
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKY--DGSSWSSIGS 130 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEE--cCCceEeccc
Confidence 2222 3467777642 223334 4467888865
No 261
>PRK10811 rne ribonuclease E; Reviewed
Probab=92.49 E-value=0.26 Score=59.88 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=48.2
Q ss_pred CCCcEEEEEEEEEec--ceEEEEeCCCceeeEeccccCcccc---------cCcccccccCCEEEEEEEE
Q psy9769 948 KPGRLVWGVLKEKMP--GGVRVEFDGDISGVFPTSAMSQATR---------TLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~--~G~fV~~~~~i~Gl~~~~~ls~~~~---------~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
.+|+|+.|+|.+|.+ .++||+++.+-.||+|.+++..... .+..+.+++||.|-+.|.+
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~K 106 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDK 106 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEee
Confidence 469999999999955 5799999999999999999953221 1234568999999999987
No 262
>PRK13684 Ycf48-like protein; Provisional
Probab=91.83 E-value=4.2 Score=45.40 Aligned_cols=136 Identities=12% Similarity=0.190 Sum_probs=80.3
Q ss_pred EEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEE-eCCCCeEEeCCCCcCCcceeEEEE-ECCEEEE
Q psy9769 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVY-DPSTNEWSSAPPMEARRSTLGVAV-LNSLIYA 412 (1026)
Q Consensus 335 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~y-d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv 412 (1026)
.+++=+-.-.+|+.+.... .-.-+.+....+..|++.|..+.++.- |....+|+.++. +..+.-.+++. -++.+++
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~ 230 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWM 230 (334)
T ss_pred eEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEE
Confidence 4444444567899876533 223345555556666776767766653 555578998754 44444444444 3678888
Q ss_pred EeccCCCCCCCEEEEE--ECCCCcEEEccCCCCC---cceeEEEEE-CCEEEEEeCCCceeeEEcCcccEEEee
Q psy9769 413 VGGFDGSSGLNSAEVY--DPSTEKWNMIAPMSTR---RSSVGVGVL-NGCLYAENLDGRILGCVKEITDWGLII 480 (1026)
Q Consensus 413 ~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~p~~---r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~W~~~~ 480 (1026)
+|.. + ...+ +-...+|+.+. .|.. ...++++.. ++.+|++|..+....-.+...+|....
T Consensus 231 vg~~-G------~~~~~s~d~G~sW~~~~-~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 231 LARG-G------QIRFNDPDDLESWSKPI-IPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVSKDGGKTWEKDP 296 (334)
T ss_pred EecC-C------EEEEccCCCCCcccccc-CCccccccceeeEEEcCCCCEEEEcCCCeEEEeCCCCCCCeECC
Confidence 8642 2 1233 22345899653 2311 112333333 678999998887777666678999874
No 263
>PRK11712 ribonuclease G; Provisional
Probab=91.23 E-value=0.41 Score=55.46 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=50.9
Q ss_pred CCCcEEEEEEEEEec--ceEEEEeCCCceeeEeccccCcc------------cccCcccccccCCEEEEEEEEE--eCCe
Q psy9769 948 KPGRLVWGVLKEKMP--GGVRVEFDGDISGVFPTSAMSQA------------TRTLVYTRFVIDTVIVCQILKY--EDGE 1011 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~--~G~fV~~~~~i~Gl~~~~~ls~~------------~~~~~~~~~~~G~~V~~~Vl~v--d~~~ 1011 (1026)
.+|+|+.|+|.+|.+ .++||.++.+-.||+|.+++... ...+..+.+++||.|-+.|++= ..+.
T Consensus 37 ~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~~~KG 116 (489)
T PRK11712 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPLGTKG 116 (489)
T ss_pred ccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCcCCCC
Confidence 469999999999966 46999999999999999998320 0112345699999999999863 2344
Q ss_pred eeec
Q psy9769 1012 LLLT 1015 (1026)
Q Consensus 1012 ~~~~ 1015 (1026)
-+||
T Consensus 117 ~~lT 120 (489)
T PRK11712 117 ARLT 120 (489)
T ss_pred CeEE
Confidence 4443
No 264
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=91.21 E-value=0.94 Score=41.84 Aligned_cols=67 Identities=18% Similarity=0.097 Sum_probs=42.9
Q ss_pred CCcEEEEEEEEEecceEEEEeCCCceeeEeccccCc-------------ccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ-------------ATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~-------------~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+|.++.|+|++.+..|+.|.++=-=+=+||.+.|.+ +.-+.-+-.|..|++|++||.++.-.+..-+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~f~d~~p~ 82 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEIFPDVPPT 82 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEEE------
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEEEecCCCC
Confidence 499999999999999999988322345788888863 1112233456899999999999876544443
No 265
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.20 E-value=1.6 Score=45.94 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=75.9
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCc
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARR 398 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r 398 (1026)
++.+|..-|..+ .+.+..||+.+++-....++|..-.+=+++.++++||..==.++..++||+.+ .+.+...+.+.
T Consensus 55 ~g~LyESTG~yG--~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t--l~~~~~~~y~~ 130 (264)
T PF05096_consen 55 DGTLYESTGLYG--QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT--LKKIGTFPYPG 130 (264)
T ss_dssp TTEEEEEECSTT--EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT--TEEEEEEE-SS
T ss_pred CCEEEEeCCCCC--cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc--ceEEEEEecCC
Confidence 456777666543 36789999999988777788887788889999999999987788899999976 45555566667
Q ss_pred ceeEEEEECCEEEEEeccCCCCCCCEEEEEECCC
Q psy9769 399 STLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPST 432 (1026)
Q Consensus 399 ~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 432 (1026)
.+-+.+..+..+|+--|+ +.++.+||.+
T Consensus 131 EGWGLt~dg~~Li~SDGS------~~L~~~dP~~ 158 (264)
T PF05096_consen 131 EGWGLTSDGKRLIMSDGS------SRLYFLDPET 158 (264)
T ss_dssp S--EEEECSSCEEEE-SS------SEEEEE-TTT
T ss_pred cceEEEcCCCEEEEECCc------cceEEECCcc
Confidence 788888778888887664 6889999875
No 266
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=90.86 E-value=0.39 Score=38.42 Aligned_cols=55 Identities=22% Similarity=0.215 Sum_probs=30.7
Q ss_pred eCceeeeeEeEEEEeeeEEEeccceeeeecccceeeCCccccccCcEEee------cCeEEEehh
Q psy9769 874 LGDEVSCVVKGISVRGVIAQVGYYKLKATCENEYVEGNKADIKVGDEVQA------KNSIEVAFK 932 (1026)
Q Consensus 874 ~G~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~~~~~~~~~~kvG~~v~~------~~~i~ls~K 932 (1026)
.|...+.+|.++.++|+|++-+. +-+-++|.+.. +..+++||+++. +.|+..|+|
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~-~~~vlLp~~e~---~~~~~~Gd~v~VFvY~D~~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGE-GKEVLLPKSEV---PEPLKVGDEVEVFVYLDKEGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT--EEEEEEGGG---------TTSEEEEEEEE-TTS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCC-CCEEEechHHc---CCCCCCCCEEEEEEEECCCCCEEEecC
Confidence 37888899999999999999776 78888888654 256899999983 667777765
No 267
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=90.76 E-value=0.85 Score=44.59 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=62.8
Q ss_pred ccccccCCCcEEEEEEEEeeecccCceeeEEeeccccccccccccccccCcccccccccccccceeeee-cccc------
Q psy9769 516 ELSNLFSIGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYINTTLETGLVLPACVHSKEDHGYLLDV-GVKN------ 588 (1026)
Q Consensus 516 ~~~~~~~vG~~v~~~v~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~l~~G~~v~g~V~sv~d~g~~v~~-G~~~------ 588 (1026)
+=.+.+..|..|.+.+...-.-+. +....+.+|..- .+..+++|.+|-|.|.++..+.++|.+ |+.+
T Consensus 22 ~G~gt~~~~g~i~Aa~~G~~~~d~--~n~~~~V~p~~~----~~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~ 95 (188)
T COG1096 22 PGEGTYEEGGEIRAAATGVVRRDD--KNRVISVKPGKK----TPPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELA 95 (188)
T ss_pred cCCCeEeECCEEEEeecccEEEcc--cceEEEeccCCC----CCCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCC
Confidence 334456667777777765433222 234444444432 455778899999999999999999997 5443
Q ss_pred --eeeeeec------------cccccCceEEEEEeeeee
Q psy9769 589 --TRAFIKY------------DSVILGQIVTCMISKIKV 613 (1026)
Q Consensus 589 --~~gf~~~------------~~~~~G~~v~~~v~~~~~ 613 (1026)
..|-++. +.+.+|+.|+++|++..+
T Consensus 96 ~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~~ 134 (188)
T COG1096 96 TSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTGD 134 (188)
T ss_pred CCceeeEEEEecccccccccccccccccEEEEEEEecCC
Confidence 3455553 239999999999999753
No 268
>KOG2715|consensus
Probab=90.72 E-value=0.46 Score=44.89 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=76.4
Q ss_pred CCCccEEEEECCEEEEEEhhhhhccChhhHhhhc-CCc----cCcccEEEecCCCHHHHHHHhhheecceeeechhhHHH
Q psy9769 63 NLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI-SFE----ESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQM 137 (1026)
Q Consensus 63 ~~~~Dv~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~----e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~~ 137 (1026)
|...=|.+.|+|..|..-|.-|..-+.-|..-|. ... .+...--.+-+=+|..|..+|+|+..|++-++.-.=..
T Consensus 18 g~s~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeG 97 (210)
T KOG2715|consen 18 GVSLWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEG 97 (210)
T ss_pred CceEEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhc
Confidence 3334478889999999999999988866665554 221 12222334456789999999999999999888855677
Q ss_pred HHHHHHhcCchhHHhHHHHhhhcc
Q psy9769 138 LLPAANLLQLTDVRDACCDFLQCQ 161 (1026)
Q Consensus 138 ll~~A~~l~l~~L~~~c~~~l~~~ 161 (1026)
+|.-|++|.++.|.+...+.|...
T Consensus 98 vL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 98 VLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cchhhhccCChHHHHHHHHHHHHH
Confidence 999999999999999988888765
No 269
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=90.66 E-value=6.7 Score=42.52 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE-C-CEEEEEeccCCCeEEEeCCCCeEEe-CCCCcCC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL-H-EKVYAVGGFNGSLRVYDPSTNEWSS-APPMEAR 397 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~yd~~~~~W~~-~~~~p~~ 397 (1026)
.+|+.++.+ ..+..||+.+++-...-.... +. .+++.. + ..+|+.++.++.+.+||+.+.+... ++....+
T Consensus 2 ~~~~s~~~d----~~v~~~d~~t~~~~~~~~~~~-~~-~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 2 KAYVSNEKD----NTISVIDTATLEVTRTFPVGQ-RP-RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred cEEEEecCC----CEEEEEECCCCceEEEEECCC-CC-CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 456666643 378889988765433211111 11 122222 3 3688888888899999998877643 2221122
Q ss_pred cceeEEEE-EC-CEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 398 RSTLGVAV-LN-SLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 398 r~~~~~~~-~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
...+. -+ +.+|+.++.+ ..+..||+.+.+
T Consensus 76 ---~~~~~~~~g~~l~~~~~~~-----~~l~~~d~~~~~ 106 (300)
T TIGR03866 76 ---ELFALHPNGKILYIANEDD-----NLVTVIDIETRK 106 (300)
T ss_pred ---cEEEECCCCCEEEEEcCCC-----CeEEEEECCCCe
Confidence 12222 23 4566665432 468899998754
No 270
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=90.62 E-value=0.27 Score=48.90 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCceEEeeeecccCCcceeeccccceeeccCcccccchh----------------hhhhcccccccccceeeeeccc--c
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----------------NAKYLTNKRVDLDCSVLYVCPR--H 708 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----------------~~~~~~G~~~~~~~~Il~vd~~--~ 708 (1026)
.|++++|.|+++.+.|+++++ +.+++|+|.+.++... +..+..|..+ ++||..+... .
T Consensus 81 ~gEVv~g~V~~v~~~G~~v~~--Gp~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~V--R~rV~~v~~~~~~ 156 (176)
T PTZ00162 81 KDEVLDAIVTDVNKLGFFAQA--GPLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEV--RLRLQGVRYDASN 156 (176)
T ss_pred CCCEEEEEEEEEecceEEEEe--eCeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEE--EEEEEEEEecCCC
Confidence 589999999999999999999 7888999877776322 1246678888 8888776543 3
Q ss_pred ceEEeechh
Q psy9769 709 FHVYLSCNE 717 (1026)
Q Consensus 709 ~~v~lS~k~ 717 (1026)
-....|+++
T Consensus 157 ~~~i~T~~~ 165 (176)
T PTZ00162 157 LFAIATINS 165 (176)
T ss_pred cEEEEEecC
Confidence 345556665
No 271
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=0.83 Score=41.14 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=69.2
Q ss_pred cEEEE-ECCEEEEEEhhhhhccChhhHhhhcCCccCcccEEEecCCCHHHHHHHhhheecceee----------------
Q psy9769 67 DVKLI-ADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDYVYSCEIY---------------- 129 (1026)
Q Consensus 67 Dv~i~-v~~~~~~~Hr~vL~~~S~yF~~mf~~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~---------------- 129 (1026)
-+.++ .+|..|.+.+.+ |.+|-..+.|+..+.+.+ -.+.++++...+|..+++|+-...-.
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~~~n-~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~ 80 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDSTACN-YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPS 80 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccccccC-CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCc
Confidence 34554 467788877654 568888888887433333 23667789999999999999653211
Q ss_pred ---------echhhHHHHHHHHHhcCchhHHhHHHHhhhcccCC
Q psy9769 130 ---------VTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHP 164 (1026)
Q Consensus 130 ---------i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~ 164 (1026)
.+.+.+.++..+|++|.++.|.++|+..+...+..
T Consensus 81 D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemirg 124 (158)
T COG5201 81 DFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRG 124 (158)
T ss_pred cHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHcc
Confidence 12245778889999999999999999988776543
No 272
>KOG2055|consensus
Probab=90.26 E-value=3.5 Score=45.80 Aligned_cols=132 Identities=18% Similarity=0.241 Sum_probs=81.2
Q ss_pred EEEEcCCCCCCCcEEEEEECCCCcEEEcCCCC---cc-ccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCC
Q psy9769 322 MLVVGGQAPKAIRSVECYDFKTERWQSVAEMP---TR-RCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEAR 397 (1026)
Q Consensus 322 i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p---~~-r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~ 397 (1026)
.++++|.. .-.+.||..+.+-+.+.++- .+ ...+ .+..++.+.++-|.+|.++.....|+.|-.--.++-.
T Consensus 272 ~i~~s~rr----ky~ysyDle~ak~~k~~~~~g~e~~~~e~F-eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~ 346 (514)
T KOG2055|consen 272 VIFTSGRR----KYLYSYDLETAKVTKLKPPYGVEEKSMERF-EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV 346 (514)
T ss_pred EEEecccc----eEEEEeeccccccccccCCCCcccchhhee-EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE
Confidence 55666642 35788999998888876542 21 1223 3445666778889999999999999998543334433
Q ss_pred cceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc----EEEccCCCCCcceeEEE-EECCEEEEEeCCCceee
Q psy9769 398 RSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK----WNMIAPMSTRRSSVGVG-VLNGCLYAENLDGRILG 468 (1026)
Q Consensus 398 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~ 468 (1026)
-...+-...+..||++||. ..||.||+.++. |..-... ++.+.| ..++.+++.|-..++..
T Consensus 347 v~~~~fsSdsk~l~~~~~~------GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGT------GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred EeeEEEecCCcEEEEEcCC------ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccCcceEE
Confidence 3333333334568888875 479999998774 4433222 333333 35777777776544433
No 273
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.12 E-value=7.5 Score=46.36 Aligned_cols=119 Identities=25% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCccCCcEEEEEcCCCCCCCcEEEEEECCCC--cEEEcCCCCcc--------ccceeeEEECCEEEEEeccCCCeEEEeC
Q psy9769 314 QPLRVPKVMLVVGGQAPKAIRSVECYDFKTE--RWQSVAEMPTR--------RCRAGLVFLHEKVYAVGGFNGSLRVYDP 383 (1026)
Q Consensus 314 ~~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~--~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~yd~ 383 (1026)
.++..++.||+.... ..++++|..+. .|+.-...+.. ....+.++.+++||+ |..++.+..+|.
T Consensus 64 tPvv~~g~vyv~s~~-----g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v-~t~dg~l~ALDa 137 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY-----SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFF-GTLDARLVALDA 137 (527)
T ss_pred CCEEECCEEEEECCC-----CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEE-EcCCCEEEEEEC
Confidence 344567888886542 36899998865 48754332211 112335677888886 556778999999
Q ss_pred CCCe--EEeCC-CCcCC-cceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc--EEEc
Q psy9769 384 STNE--WSSAP-PMEAR-RSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMI 438 (1026)
Q Consensus 384 ~~~~--W~~~~-~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~ 438 (1026)
.|.+ |+.-. .+... ....+-++.++.||+-...........+..||.++++ |+.-
T Consensus 138 ~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 138 KTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 8875 86532 22211 1122345678888875332222234679999998876 8643
No 274
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=89.76 E-value=4 Score=43.00 Aligned_cols=106 Identities=24% Similarity=0.277 Sum_probs=75.7
Q ss_pred eEE-ECCEEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEE
Q psy9769 361 LVF-LHEKVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNM 437 (1026)
Q Consensus 361 ~~~-~~~~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 437 (1026)
... .+|.+|.--|..+ .+..||+.+++-....++|..-.+-+++.++++||..-= .......||+.+ .+.
T Consensus 50 L~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW-----k~~~~f~yd~~t--l~~ 122 (264)
T PF05096_consen 50 LEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW-----KEGTGFVYDPNT--LKK 122 (264)
T ss_dssp EEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES-----SSSEEEEEETTT--TEE
T ss_pred EEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe-----cCCeEEEEcccc--ceE
Confidence 444 5789999888765 678899999987666677777777789999999999832 136788999864 666
Q ss_pred ccCCCCCcceeEEEEECCEEEEEeCCCceeeEEcCc
Q psy9769 438 IAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKEI 473 (1026)
Q Consensus 438 ~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 473 (1026)
+...+.+..+-+.+.-+..||+.-|.......|+.+
T Consensus 123 ~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 123 IGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp EEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred EEEEecCCcceEEEcCCCEEEEECCccceEEECCcc
Confidence 666666677778887788999999988887777653
No 275
>KOG0511|consensus
Probab=89.38 E-value=0.12 Score=55.18 Aligned_cols=85 Identities=18% Similarity=0.223 Sum_probs=56.2
Q ss_pred ccEEEEE-CCEEEEEEhhhhhccChhhHhhhcCCccCcccEEEecCCCHHHHHHHhhheecceeeechhhHHHHHHHHHh
Q psy9769 66 CDVKLIA-DGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANL 144 (1026)
Q Consensus 66 ~Dv~i~v-~~~~~~~Hr~vL~~~S~yF~~mf~~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~v~~ll~~A~~ 144 (1026)
.|++|.. +|+.|.|||.+|+++|.+|..-+..+ -....+|.-..+-+.+|..+++|+|-..-.+-.+.-.+|+.+..+
T Consensus 150 ~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~-~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~k 228 (516)
T KOG0511|consen 150 HDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMF-YVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVK 228 (516)
T ss_pred cchHHHhhccccccHHHHHHHhhhcccCchhhhh-ccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhh
Confidence 3777765 57889999999999999887644411 112345555567789999999999976222333344556666666
Q ss_pred cCchhHH
Q psy9769 145 LQLTDVR 151 (1026)
Q Consensus 145 l~l~~L~ 151 (1026)
|+++.|.
T Consensus 229 F~~e~l~ 235 (516)
T KOG0511|consen 229 FSKEKLS 235 (516)
T ss_pred ccHHHhH
Confidence 6655544
No 276
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=89.14 E-value=0.47 Score=42.60 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCchhHHhHHHHhhhcccC------------CcchhhHHHhhhh--cCchhHHHHHHhhhhhhh------
Q psy9769 135 VQMLLPAANLLQLTDVRDACCDFLQCQLH------------PTNCLGIRAFADL--HSCLDLLSTAENYIELHF------ 194 (1026)
Q Consensus 135 v~~ll~~A~~l~l~~L~~~c~~~l~~~l~------------~~n~~~~~~~a~~--~~~~~L~~~~~~~i~~~~------ 194 (1026)
|.+++.+|..|++.+|.+.|.+|+..++. .+....++.--.. ..-..+.+++..|+..+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 57899999999999999999999998732 2223333332221 123467788888886553
Q ss_pred -hheecccccccCCHhhHhcee
Q psy9769 195 -AEIVECEEFLSLSHEQVLGLI 215 (1026)
Q Consensus 195 -~~l~~~~~f~~L~~~~l~~ll 215 (1026)
..+++.-+|..|+.+.|.+.+
T Consensus 81 ~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 81 LKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHhCCcccCCHHHHHHHH
Confidence 455666677777777766554
No 277
>KOG0310|consensus
Probab=88.91 E-value=17 Score=41.02 Aligned_cols=145 Identities=22% Similarity=0.344 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCC----ccccceeeEEECCEEEEEeccCCCeEEEeCCCC-eEEeCC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMP----TRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTN-EWSSAP 392 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p----~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~-~W~~~~ 392 (1026)
.++.+++.|+.+. -+..+|..+..- + ..+. .-|+. ++.-.++.|.+.|||++.+..||..+. .|..
T Consensus 121 ~d~t~l~s~sDd~----v~k~~d~s~a~v-~-~~l~~htDYVR~g-~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~-- 191 (487)
T KOG0310|consen 121 QDNTMLVSGSDDK----VVKYWDLSTAYV-Q-AELSGHTDYVRCG-DISPANDHIVVTGSYDGKVRLWDTRSLTSRVV-- 191 (487)
T ss_pred cCCeEEEecCCCc----eEEEEEcCCcEE-E-EEecCCcceeEee-ccccCCCeEEEecCCCceEEEEEeccCCceeE--
Confidence 4678888887642 233444444332 1 1111 12332 233346789999999999999999887 4532
Q ss_pred CCcCCcceeEEEEE-C-CEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCC-CCcceeEEEEE--CCEEEEEeCCCcee
Q psy9769 393 PMEARRSTLGVAVL-N-SLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS-TRRSSVGVGVL--NGCLYAENLDGRIL 467 (1026)
Q Consensus 393 ~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~--~~~lyv~GG~~~~~ 467 (1026)
.+.....--..+.+ + +.|-.+|| +.+-+||+.++.=. +..|. .-..-.|.... +.+|+-.|=.+++.
T Consensus 192 elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VK 263 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVK 263 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecccccceE
Confidence 22222111123333 3 44555666 67888887644321 22221 11111122222 24565555466666
Q ss_pred eEEcCcccEEEeec
Q psy9769 468 GCVKEITDWGLIIE 481 (1026)
Q Consensus 468 ~~~~~~~~W~~~~~ 481 (1026)
.|+ .+.|..+..
T Consensus 264 Vfd--~t~~Kvv~s 275 (487)
T KOG0310|consen 264 VFD--TTNYKVVHS 275 (487)
T ss_pred EEE--ccceEEEEe
Confidence 676 455666655
No 278
>KOG1036|consensus
Probab=88.87 E-value=8.2 Score=40.86 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=59.6
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcce
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRST 400 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~ 400 (1026)
.-.+.||.+ ..+..||..+..=..+..--.+-..-.-. +.....|.||+++++.++|+....- ......+-.-
T Consensus 66 ~~~~~G~~d----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~--~~~~d~~kkV 138 (323)
T KOG1036|consen 66 STIVTGGLD----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVV--VGTFDQGKKV 138 (323)
T ss_pred ceEEEeccC----ceEEEEEecCCcceeeccCCCceEEEEee-ccCCeEEEcccCccEEEEecccccc--ccccccCceE
Confidence 344566654 36889999988776665433332211111 3344558899999999999986221 1122222233
Q ss_pred eEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 401 LGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 401 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
+++.+ .|.+.|+|+.+ ..+..||+.+..
T Consensus 139 y~~~v-~g~~LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 139 YCMDV-SGNRLVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred EEEec-cCCEEEEeecC-----ceEEEEEccccc
Confidence 44444 44555666654 678999987543
No 279
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.80 E-value=15 Score=38.89 Aligned_cols=158 Identities=17% Similarity=0.187 Sum_probs=86.2
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCC-----ccccceeeEEECCEEEEEeccC--------CCeEEEeCCC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMP-----TRRCRAGLVFLHEKVYAVGGFN--------GSLRVYDPST 385 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p-----~~r~~~~~~~~~~~iyv~GG~~--------~~~~~yd~~~ 385 (1026)
++.+|+.... ....+|+.+.+++.+...+ ..+.+-.++--+|.+|+.--.. +.++++++.
T Consensus 51 ~g~l~v~~~~------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~- 123 (246)
T PF08450_consen 51 DGRLYVADSG------GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD- 123 (246)
T ss_dssp TSEEEEEETT------CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-
T ss_pred CCEEEEEEcC------ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-
Confidence 4677777542 4566799999999886653 3344444555578999863211 358889998
Q ss_pred CeEEeCC-CCcCCcceeEEEEE-CC-EEEEEeccCCCCCCCEEEEEECCCCc--EE---EccCCCCCcc-eeEEEEE-CC
Q psy9769 386 NEWSSAP-PMEARRSTLGVAVL-NS-LIYAVGGFDGSSGLNSAEVYDPSTEK--WN---MIAPMSTRRS-SVGVGVL-NG 455 (1026)
Q Consensus 386 ~~W~~~~-~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~--W~---~~~~~p~~r~-~~~~~~~-~~ 455 (1026)
.+.+.+. .+.. ..+.+.. ++ .+|+.-- ....+++|++.... +. ....++.... .-++++- +|
T Consensus 124 ~~~~~~~~~~~~---pNGi~~s~dg~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 124 GKVTVVADGLGF---PNGIAFSPDGKTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp SEEEEEEEEESS---EEEEEEETTSSEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred CeEEEEecCccc---ccceEECCcchheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 6655543 2221 1233333 44 5777532 23679999985333 43 2233333322 2233332 78
Q ss_pred EEEEEe-CCCceeeEEcCcccEEEeecCCCcccceEEE
Q psy9769 456 CLYAEN-LDGRILGCVKEITDWGLIIELPNFLSASVHI 492 (1026)
Q Consensus 456 ~lyv~G-G~~~~~~~~~~~~~W~~~~~lP~~~~g~~~~ 492 (1026)
+||+.. +.+.+..+++. .+=....++|......+++
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 999985 46678888877 4433444566443333333
No 280
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.21 E-value=25 Score=41.72 Aligned_cols=117 Identities=23% Similarity=0.410 Sum_probs=67.5
Q ss_pred CccCCcEEEEEcCCCCCCCcEEEEEECCCC--cEEEcCCCCccc-----cceeeEEEC-CEEEEEeccCCCeEEEeCCCC
Q psy9769 315 PLRVPKVMLVVGGQAPKAIRSVECYDFKTE--RWQSVAEMPTRR-----CRAGLVFLH-EKVYAVGGFNGSLRVYDPSTN 386 (1026)
Q Consensus 315 ~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~yd~~~~ 386 (1026)
++..++.+|+.... ..++++|..+. .|+.-...+..+ ....+++.+ +.+|+ |..++.++.+|..|.
T Consensus 57 Pvv~~g~vy~~~~~-----g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v-~~~~g~v~AlD~~TG 130 (488)
T cd00216 57 PLVVDGDMYFTTSH-----SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFF-GTFDGRLVALDAETG 130 (488)
T ss_pred CEEECCEEEEeCCC-----CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEE-ecCCCeEEEEECCCC
Confidence 44557788876542 47899998765 487643222111 112234556 78875 556788999999876
Q ss_pred e--EEeCCCCcC-Cc--ceeEEEEECCEEEEEeccCCC----CCCCEEEEEECCCCc--EEEc
Q psy9769 387 E--WSSAPPMEA-RR--STLGVAVLNSLIYAVGGFDGS----SGLNSAEVYDPSTEK--WNMI 438 (1026)
Q Consensus 387 ~--W~~~~~~p~-~r--~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~~~~--W~~~ 438 (1026)
+ |+.-...+. .. ...+.++.++.+|+ |..+.. .....++++|..|++ |+.-
T Consensus 131 ~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 131 KQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 5 876433221 11 12233455666665 432221 123678999998765 8753
No 281
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=87.05 E-value=0.72 Score=39.56 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=44.3
Q ss_pred ccCcccccccccccccceeeeecccceeeeeecc-----------ccccCceEEEEEeeeeec
Q psy9769 563 ETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYD-----------SVILGQIVTCMISKIKVA 614 (1026)
Q Consensus 563 ~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~-----------~~~~G~~v~~~v~~~~~~ 614 (1026)
+.|+.|=|.|.++...+|.||+|.. ..|++|.. .+.+|+.|.|+|..++..
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~-~~a~L~~~~f~gatk~~rp~L~~GDlV~ArV~~~~~~ 66 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGS-EPASLSYLAFEGATKRNRPNLNVGDLVYARVVKANRD 66 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCC-cceEechHHcccccccccccCCCCCEEEEEEEecCCC
Confidence 5799999999999999999999864 57888852 289999999999999876
No 282
>KOG3298|consensus
Probab=86.79 E-value=3 Score=39.62 Aligned_cols=60 Identities=12% Similarity=0.039 Sum_probs=41.3
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccC----cccccC-c------ccccccCCEEEEEEEEEeCC
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMS----QATRTL-V------YTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls----~~~~~~-~------~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
|++|+|+|+++...|+|++.+ -++=++..--+. -...+| | ..+..+|.+|+.+|+.+--+
T Consensus 82 GEVvdgvV~~Vnk~G~F~~~G-Pl~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~ 152 (170)
T KOG3298|consen 82 GEVVDGVVTKVNKMGVFARSG-PLEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVD 152 (170)
T ss_pred CcEEEEEEEEEeeeeEEEecc-ceEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEe
Confidence 999999999999999999985 444444332222 122222 2 22678999999999876443
No 283
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=86.54 E-value=0.84 Score=38.75 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=38.7
Q ss_pred cCCceEEeeeecccCCcceeecccc-----------------ceeeccCcccccchh------hhhhcccccccccceee
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLKNT-----------------QFKAFISPEAMSTAY------NAKYLTNKRVDLDCSVL 702 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~~~-----------------~~~gfi~~~~~~~~~------~~~~~~G~~~~~~~~Il 702 (1026)
+.|++|.|+|+++.+.-+.+++..- .|.|.|..+++.... .+.|++|+-+ +|+||
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIV--rA~Vi 80 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIV--RARVI 80 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEE--EEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEE--EEEEe
Confidence 4799999999999998887777522 578888777766544 5678999999 99998
Q ss_pred ee
Q psy9769 703 YV 704 (1026)
Q Consensus 703 ~v 704 (1026)
++
T Consensus 81 Sl 82 (82)
T PF10447_consen 81 SL 82 (82)
T ss_dssp EE
T ss_pred eC
Confidence 74
No 284
>KOG1332|consensus
Probab=86.13 E-value=7.2 Score=39.94 Aligned_cols=102 Identities=15% Similarity=0.259 Sum_probs=65.1
Q ss_pred EEEEEeccCCCeEEEeCCCCeEEeC----------------CCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEEC
Q psy9769 367 KVYAVGGFNGSLRVYDPSTNEWSSA----------------PPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDP 430 (1026)
Q Consensus 367 ~iyv~GG~~~~~~~yd~~~~~W~~~----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 430 (1026)
+=++-||+++.+-+++...++|..- |....++..-+.+.-+++++++ .-+-
T Consensus 176 krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw-------------t~~~ 242 (299)
T KOG1332|consen 176 KRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW-------------TKDE 242 (299)
T ss_pred ceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE-------------EecC
Confidence 4578899999888877777788531 2334566666666667776654 2233
Q ss_pred CCCcEEE--ccCCCCCcceeEEEEECCEEEEEeCCCceeeEEcC-cccEEEeec
Q psy9769 431 STEKWNM--IAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKE-ITDWGLIIE 481 (1026)
Q Consensus 431 ~~~~W~~--~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~-~~~W~~~~~ 481 (1026)
+.+.|+. +.+.|.+.+..+-...++-|-|-||.+++.-+-.. ..+|..+..
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 4667863 44677777766666667766677776665444333 367988754
No 285
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=85.83 E-value=38 Score=39.03 Aligned_cols=101 Identities=11% Similarity=0.011 Sum_probs=58.4
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccC--CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-E
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFN--GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS-L 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~ 409 (1026)
..++.||..++....+...+...... ...-+| .|++....+ .+++.+|..++....+...+...... ...-++ +
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~dg~~ 291 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPDGKS 291 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCE-EECCCCCE
Confidence 57999999988777665543322222 222244 566554433 36888999988777765433221111 112244 4
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
|++.....+ ...++.+|..++.+..+.
T Consensus 292 l~~~s~~~g---~~~iy~~d~~~~~~~~l~ 318 (417)
T TIGR02800 292 IAFTSDRGG---SPQIYMMDADGGEVRRLT 318 (417)
T ss_pred EEEEECCCC---CceEEEEECCCCCEEEee
Confidence 554433222 257999999988887665
No 286
>PRK05054 exoribonuclease II; Provisional
Probab=85.54 E-value=0.83 Score=55.60 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=55.6
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccchh----------------hhhhcccccccccceeeeeccccceE
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY----------------NAKYLTNKRVDLDCSVLYVCPRHFHV 711 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~----------------~~~~~~G~~~~~~~~Il~vd~~~~~v 711 (1026)
|....|.|..+.++|++|.+...++.||++.+.+...| ...|..|++| +++|..+|..++++
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V--~V~v~~vd~~~~~i 639 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVI--DVTLAEVRMETRSI 639 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEE--EEEEEEEccccCeE
Confidence 45999999999999999999767899998777764321 2369999999 99999999999998
Q ss_pred Eeec
Q psy9769 712 YLSC 715 (1026)
Q Consensus 712 ~lS~ 715 (1026)
.+++
T Consensus 640 ~~~~ 643 (644)
T PRK05054 640 IARP 643 (644)
T ss_pred EEEE
Confidence 8764
No 287
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=85.52 E-value=1.6 Score=44.78 Aligned_cols=78 Identities=21% Similarity=0.253 Sum_probs=57.3
Q ss_pred ccccCcccccccccccccceeeeecccceeeeeeccc----------------cccCceEEEEEeeeeeccceeEEEEec
Q psy9769 561 TLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS----------------VILGQIVTCMISKIKVAASMSILEVTL 624 (1026)
Q Consensus 561 ~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~----------------~~~G~~v~~~v~~~~~~~~~~~i~ls~ 624 (1026)
..+.|++|=|.|.++...++.||+|.+ ..|++|.++ |.+|+.+.|+|..++... .+.|++
T Consensus 61 iP~~gD~VIG~I~~v~~~~W~VDI~sp-~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~~---~~~L~~ 136 (239)
T COG1097 61 IPEVGDVVIGKIIEVGPSGWKVDIGSP-YPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDRDG---EVELTL 136 (239)
T ss_pred cCCCCCEEEEEEEEEcccceEEEcCCc-cceEeehhhhhcccccccccccccccccCCEEEEEEEEccCCC---ceEEEe
Confidence 346799999999999999999999854 467777422 889999999999998872 234443
Q ss_pred hHHHHhhhccCCCcccccccccCCceEEeee
Q psy9769 625 DEELIRSANRLSPSQVSLLNLVPGMKVIANI 655 (1026)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~l~~G~~v~~~V 655 (1026)
+...+..|++|++|...-
T Consensus 137 -------------k~~~~GkL~~G~iv~i~p 154 (239)
T COG1097 137 -------------KDEGLGKLKNGQIVKIPP 154 (239)
T ss_pred -------------ecCCCccccCCEEEEEch
Confidence 244566666666655443
No 288
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=85.37 E-value=25 Score=36.96 Aligned_cols=138 Identities=18% Similarity=0.182 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE-CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCc-
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL-HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARR- 398 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r- 398 (1026)
.++++|+.+ ..+..||..+.+-........... ..+... ++..+++|+.++.+.+||..+++... .+....
T Consensus 22 ~~l~~~~~~----g~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--~~~~~~~ 94 (289)
T cd00200 22 KLLATGSGD----GTIKVWDLETGELLRTLKGHTGPV-RDVAASADGTYLASGSSDKTIRLWDLETGECVR--TLTGHTS 94 (289)
T ss_pred CEEEEeecC----cEEEEEEeeCCCcEEEEecCCcce-eEEEECCCCCEEEEEcCCCeEEEEEcCcccceE--EEeccCC
Confidence 445555532 467778876654211111111111 122222 44577788889999999998753221 111111
Q ss_pred ceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEEC-CEEEEEeC-CCceeeEEc
Q psy9769 399 STLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLN-GCLYAENL-DGRILGCVK 471 (1026)
Q Consensus 399 ~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~lyv~GG-~~~~~~~~~ 471 (1026)
.-.++... ++.+++.|+.+ ..+..||+.+.+-...-. .....-.++.... +.+++.|+ .+.+.-++.
T Consensus 95 ~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 95 YVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred cEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 11222222 34666666633 568899987544322111 1111122233333 45555555 444444444
No 289
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=85.12 E-value=27 Score=38.78 Aligned_cols=142 Identities=9% Similarity=0.090 Sum_probs=72.5
Q ss_pred EEEEEcCCCCCCCcEEEEEECCC-CcEEEcCCCCccccceeeEEE--CCEEEEEeccCCCeEEEeCC-CCeEEeCCCCcC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKT-ERWQSVAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRVYDPS-TNEWSSAPPMEA 396 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~-~~~W~~~~~~p~ 396 (1026)
.+|+..+.+ ..+..||..+ .+++.+...+.....+.++.- +..+|+.+...+.+..|+.. +.+++.....+.
T Consensus 3 ~~y~~~~~~----~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~ 78 (330)
T PRK11028 3 IVYIASPES----QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL 78 (330)
T ss_pred EEEEEcCCC----CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC
Confidence 467775533 4677777753 577766555433222233332 34688876666778788775 456765543333
Q ss_pred CcceeEEEE-ECC-EEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCCCcceeEEEEE--CCEEEEEeC-CCceeeE
Q psy9769 397 RRSTLGVAV-LNS-LIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMSTRRSSVGVGVL--NGCLYAENL-DGRILGC 469 (1026)
Q Consensus 397 ~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG-~~~~~~~ 469 (1026)
+..-+.++. -++ .+|+..- . .+.+..||+.++. ...+...+.....|+++.. +..+|+..- .+.+..|
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~ 153 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLF 153 (330)
T ss_pred CCCceEEEECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEE
Confidence 222222332 244 4666542 2 2567778775321 2222222222233444444 346777763 3445555
Q ss_pred Ec
Q psy9769 470 VK 471 (1026)
Q Consensus 470 ~~ 471 (1026)
+.
T Consensus 154 d~ 155 (330)
T PRK11028 154 TL 155 (330)
T ss_pred EE
Confidence 44
No 290
>KOG2055|consensus
Probab=84.56 E-value=8.8 Score=42.80 Aligned_cols=145 Identities=15% Similarity=0.072 Sum_probs=86.2
Q ss_pred cEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccc--eeeEEECCE-EEEEeccCCCeEEEeCCCCeEEeCCCC--
Q psy9769 320 KVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCR--AGLVFLHEK-VYAVGGFNGSLRVYDPSTNEWSSAPPM-- 394 (1026)
Q Consensus 320 ~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~-iyv~GG~~~~~~~yd~~~~~W~~~~~~-- 394 (1026)
..+.+.+|.++. -.++..|-.+|. .+.++...++- .+...-+|. ..+++|...-.+.||..+.+-.++.++
T Consensus 225 ~plllvaG~d~~--lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g 300 (514)
T KOG2055|consen 225 APLLLVAGLDGT--LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG 300 (514)
T ss_pred CceEEEecCCCc--EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCC
Confidence 357777787532 345555555554 33333322221 111122454 778888888889999999888777653
Q ss_pred -cCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCCceeeEEcCc
Q psy9769 395 -EARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKEI 473 (1026)
Q Consensus 395 -p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 473 (1026)
+.+-...-.+..++.+.++-|.++ .++.....|+.|-.--.++-.....+...-+..||+.||+|.++.+|...
T Consensus 301 ~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 301 VEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred cccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 211111223445666667767553 46777788888864444444444444444466899999999887776654
No 291
>PTZ00421 coronin; Provisional
Probab=84.39 E-value=59 Score=38.46 Aligned_cols=106 Identities=14% Similarity=0.127 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEE-EcCCCCccccceeeE-EECCEEEEEeccCCCeEEEeCCCCeE-EeCCCCcCC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQ-SVAEMPTRRCRAGLV-FLHEKVYAVGGFNGSLRVYDPSTNEW-SSAPPMEAR 397 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~yd~~~~~W-~~~~~~p~~ 397 (1026)
.+++.||.+ ..+.+||..+.+-. .+...... -.+++ ..++.+++.|+.++.+.+||+.+.+- ..+..-...
T Consensus 139 ~iLaSgs~D----gtVrIWDl~tg~~~~~l~~h~~~--V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 139 NVLASAGAD----MVVNVWDVERGKAVEVIKCHSDQ--ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred CEEEEEeCC----CEEEEEECCCCeEEEEEcCCCCc--eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 456666654 36788898776432 12111111 11222 23678888999999999999987652 122111111
Q ss_pred cceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCC
Q psy9769 398 RSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433 (1026)
Q Consensus 398 r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 433 (1026)
+........++..++.+|.+.. .-..+..||+.+.
T Consensus 213 ~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~ 247 (493)
T PTZ00421 213 KSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKM 247 (493)
T ss_pred cceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCC
Confidence 1111111223334444443321 1257889998653
No 292
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=84.35 E-value=33 Score=40.66 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=77.9
Q ss_pred cEEEEEECCCC--cEEEcCCCCc---cccceeeEE-----ECC---EEEEEeccCCCeEEEeCCCCe--EEeCCCCcCCc
Q psy9769 334 RSVECYDFKTE--RWQSVAEMPT---RRCRAGLVF-----LHE---KVYAVGGFNGSLRVYDPSTNE--WSSAPPMEARR 398 (1026)
Q Consensus 334 ~~~~~yd~~~~--~W~~~~~~p~---~r~~~~~~~-----~~~---~iyv~GG~~~~~~~yd~~~~~--W~~~~~~p~~r 398 (1026)
+.++++|..+. .|+.-...+. -+.....+. .++ .+.++|..++.++.+|..+.+ |+.-..
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----- 330 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----- 330 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----
Confidence 47999999876 4875322111 011111111 233 245557778899999999876 864221
Q ss_pred ceeEEEEECCEEEEEeccCC------------CCCCCEEEEEECCCCc--EEEccCC-------CCCcceeEEEEECCEE
Q psy9769 399 STLGVAVLNSLIYAVGGFDG------------SSGLNSAEVYDPSTEK--WNMIAPM-------STRRSSVGVGVLNGCL 457 (1026)
Q Consensus 399 ~~~~~~~~~~~iyv~GG~~~------------~~~~~~v~~yd~~~~~--W~~~~~~-------p~~r~~~~~~~~~~~l 457 (1026)
...++.-.+.+|+-..... ......+..+|..+++ |+.-... ..+......++.++.|
T Consensus 331 -~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v 409 (488)
T cd00216 331 -EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLV 409 (488)
T ss_pred -ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeE
Confidence 0111122366776432110 1123568899988765 8764320 0222233456677888
Q ss_pred EEEeCCCceeeEEcCccc--EEEe
Q psy9769 458 YAENLDGRILGCVKEITD--WGLI 479 (1026)
Q Consensus 458 yv~GG~~~~~~~~~~~~~--W~~~ 479 (1026)
|+-...+.+..+|..+.+ |+.-
T Consensus 410 ~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 410 FAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEECCCCeEEEEECCCCceeeEEE
Confidence 887777788888877644 8853
No 293
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=84.11 E-value=1.2 Score=37.77 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=31.8
Q ss_pred echhhHHHHHHHHHhcCchhHHhHHHHhhhcccCCcchhhH
Q psy9769 130 VTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGI 170 (1026)
Q Consensus 130 i~~~~v~~ll~~A~~l~l~~L~~~c~~~l~~~l~~~n~~~~ 170 (1026)
++.+.+.+|+.+|++|+++.|.+.|+.++...+.-.+.-++
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eei 51 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEI 51 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHH
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHH
Confidence 56789999999999999999999999999887654444333
No 294
>KOG1856|consensus
Probab=83.96 E-value=0.72 Score=56.69 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=69.4
Q ss_pred cccccccccCCceEEeeeecccCCc---ceeeccccceeeccCcccccchh----hhhhcccccccccceeeeeccccce
Q psy9769 638 SQVSLLNLVPGMKVIANICQQLPHG---WKAKLKNTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFH 710 (1026)
Q Consensus 638 ~~~~~~~l~~G~~v~~~V~~v~~~G---~~v~~~~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~ 710 (1026)
...+-+++-.|.+|.++|++|..+- +-|.+ ..|+.|||+...++..- ....++||.+ .|||+++|.++-.
T Consensus 976 Tget~et~~~g~iV~~~V~~vt~rr~~Cv~v~l-d~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v--~~kvi~id~e~f~ 1052 (1299)
T KOG1856|consen 976 TGETPETFYEGAIVPVTVTKVTHRRGICVRVRL-DCGVTGFILAKNLSDRDVRRPENRVKVGQTV--YCKVIKIDKERFS 1052 (1299)
T ss_pred hCCChhHhccCceEEEeeeEEEecccceeEEEe-cCCCceeeeccccChhhccCHHHhhccCceE--EEEeeeeeHhhhh
Confidence 3445566778999999999999987 44466 58999999888888733 6678899999 9999999999999
Q ss_pred EEeechhhhhhccc
Q psy9769 711 VYLSCNEALLERQT 724 (1026)
Q Consensus 711 v~lS~k~~l~~~~~ 724 (1026)
+-||++.+-+..+.
T Consensus 1053 v~Ls~r~sdlk~~n 1066 (1299)
T KOG1856|consen 1053 VELSCRTSDLKDQN 1066 (1299)
T ss_pred hhhhhhhHHhhhcc
Confidence 99999998776433
No 295
>KOG0316|consensus
Probab=83.89 E-value=28 Score=35.61 Aligned_cols=130 Identities=14% Similarity=0.166 Sum_probs=81.4
Q ss_pred cEEEEEECCCCcEEEc-CCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC--EE
Q psy9769 334 RSVECYDFKTERWQSV-AEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS--LI 410 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~--~i 410 (1026)
+.+..+||....-..- ..-....- -++.+.++.=+..||-+..+++||..|++--. .+..-.+...++.+|+ .+
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--r~rgH~aqVNtV~fNeesSV 115 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR--RFRGHLAQVNTVRFNEESSV 115 (307)
T ss_pred ceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeee--ecccccceeeEEEecCcceE
Confidence 4566677766543321 11001111 12344566666778878889999999876321 1100011122344543 47
Q ss_pred EEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeC-CCceeeEEc
Q psy9769 411 YAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENL-DGRILGCVK 471 (1026)
Q Consensus 411 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG-~~~~~~~~~ 471 (1026)
.+-|+++ .++.+||-.++..+.+.-+..++.+-..+.+.++..+.|- .|..+.|+.
T Consensus 116 v~SgsfD-----~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydi 172 (307)
T KOG0316|consen 116 VASGSFD-----SSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDI 172 (307)
T ss_pred EEecccc-----ceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEe
Confidence 6777766 6788999999999988888899999999999998888886 345555554
No 296
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.87 E-value=15 Score=40.81 Aligned_cols=120 Identities=12% Similarity=0.132 Sum_probs=78.3
Q ss_pred cEEEEEECCCC-----cEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCe-EEeCCCCcCCcceeEEEEEC
Q psy9769 334 RSVECYDFKTE-----RWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE-WSSAPPMEARRSTLGVAVLN 407 (1026)
Q Consensus 334 ~~~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~~ 407 (1026)
..+..|+.... +++.+...+.+-.-.+++.++|++.+.-| +.+.+|+...+. |...+.+..+-...+..+.+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~ 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--CEEEEEEccCcccchhhheecceEEEEEEeccc
Confidence 66888888874 56666544444445677788999655544 678888888887 88877666666667777888
Q ss_pred CEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEE-CCEEEE
Q psy9769 408 SLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVL-NGCLYA 459 (1026)
Q Consensus 408 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv 459 (1026)
+.|++.--.. .-.+..|+....+-..++.-+.++...++..+ ++..++
T Consensus 140 ~~I~vgD~~~----sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 140 NYILVGDAMK----SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp TEEEEEESSS----SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEE
T ss_pred cEEEEEEccc----CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEE
Confidence 8776542222 13455778866667777766667877777777 655333
No 297
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=82.88 E-value=39 Score=36.38 Aligned_cols=102 Identities=17% Similarity=0.166 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCCCCcEEEEEECCCCcEEE-cCCCCccccceeeEEE--CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcC
Q psy9769 320 KVMLVVGGQAPKAIRSVECYDFKTERWQS-VAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEA 396 (1026)
Q Consensus 320 ~~i~v~GG~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~ 396 (1026)
..+|+.++.+ ..+..||..+.+... ++..+.+ ..++.. ++.+|+.++.++.+.+||+.+.+- +..++.
T Consensus 43 ~~l~~~~~~~----~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~~ 113 (300)
T TIGR03866 43 KLLYVCASDS----DTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIPV 113 (300)
T ss_pred CEEEEEECCC----CeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEeeC
Confidence 4577776532 468899998877654 2221111 122222 346888777778899999987642 222221
Q ss_pred CcceeEEEE-ECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 397 RRSTLGVAV-LNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 397 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
.....+++. -++.+++++..++ +.+..||+.+.+
T Consensus 114 ~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~ 148 (300)
T TIGR03866 114 GVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYE 148 (300)
T ss_pred CCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCe
Confidence 111122222 3677777665332 346667876654
No 298
>KOG2916|consensus
Probab=82.65 E-value=1.4 Score=45.08 Aligned_cols=71 Identities=17% Similarity=0.041 Sum_probs=64.6
Q ss_pred cCCceEEeeeecccCCcceeecc-ccceeeccCcccccchh----hhhhcccccccccceeeeeccccceEEeechhh
Q psy9769 646 VPGMKVIANICQQLPHGWKAKLK-NTQFKAFISPEAMSTAY----NAKYLTNKRVDLDCSVLYVCPRHFHVYLSCNEA 718 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~G~~v~~~-~~~~~gfi~~~~~~~~~----~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~k~~ 718 (1026)
..+++|-++|.++-.-|+.|.++ ++.+.|.|-.+++|..+ +...++|..= -|.||.||.+++-|-||.+.-
T Consensus 15 ev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E--~vvVlrVDkekGYIDLSkrrV 90 (304)
T KOG2916|consen 15 EVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNE--PVVVLRVDKEKGYIDLSKRRV 90 (304)
T ss_pred CcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcc--eEEEEEEcCCCCceechhccC
Confidence 45889999999999999999998 88899999999999887 7888999987 899999999999999998863
No 299
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.95 E-value=22 Score=42.42 Aligned_cols=114 Identities=15% Similarity=0.222 Sum_probs=68.5
Q ss_pred eeeEEECCEEEEEeccCCCeEEEeCCCCe--EEeCCCCcCCc--------ceeEEEEECCEEEEEeccCCCCCCCEEEEE
Q psy9769 359 AGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSAPPMEARR--------STLGVAVLNSLIYAVGGFDGSSGLNSAEVY 428 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~y 428 (1026)
.+-++.++.||+.. ..+.++.+|..|.+ |+.-...+... ...+.++.+++||+... + ..+.++
T Consensus 63 stPvv~~g~vyv~s-~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l~AL 135 (527)
T TIGR03075 63 SQPLVVDGVMYVTT-SYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARLVAL 135 (527)
T ss_pred cCCEEECCEEEEEC-CCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----CEEEEE
Confidence 34566799999854 35578999988764 87644322111 11234567888887432 2 468999
Q ss_pred ECCCCc--EEEcc-CCCCC-cceeEEEEECCEEEEEeC------CCceeeEEcCccc--EEEe
Q psy9769 429 DPSTEK--WNMIA-PMSTR-RSSVGVGVLNGCLYAENL------DGRILGCVKEITD--WGLI 479 (1026)
Q Consensus 429 d~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~lyv~GG------~~~~~~~~~~~~~--W~~~ 479 (1026)
|.+|++ |+.-. ..... ....+-++.++++|+-.. .+.+..+|..+.+ |+.-
T Consensus 136 Da~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 136 DAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 998776 87533 22111 112234567888887532 3567777877644 8644
No 300
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=81.66 E-value=61 Score=37.03 Aligned_cols=108 Identities=15% Similarity=0.102 Sum_probs=59.3
Q ss_pred CCEEEEEeccCCCeEE-EeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcE-----EEc
Q psy9769 365 HEKVYAVGGFNGSLRV-YDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW-----NMI 438 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-----~~~ 438 (1026)
++.++++|- .+.+++ .|.-...|+.+......+-.......++.++++|... .+..-+.....| ..+
T Consensus 249 dG~~~~vg~-~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G------~l~~S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 249 DGDYVAVSS-RGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGG------GLYVSKGTGLTEEDFDFEEA 321 (398)
T ss_pred CCCEEEEEC-CccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCc------eEEEecCCCCcccccceeec
Confidence 345555543 334444 4554445988764333332222234578898887431 222223333334 443
Q ss_pred cCCCCCcceeE-EEEE-CCEEEEEeCCCceeeEEcCcccEEEee
Q psy9769 439 APMSTRRSSVG-VGVL-NGCLYAENLDGRILGCVKEITDWGLII 480 (1026)
Q Consensus 439 ~~~p~~r~~~~-~~~~-~~~lyv~GG~~~~~~~~~~~~~W~~~~ 480 (1026)
+. +..+.... ++.. ++.+|++|..+....-.+...+|....
T Consensus 322 ~~-~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 322 DI-KSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDK 364 (398)
T ss_pred cc-CCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEcc
Confidence 32 22233333 3233 679999999888888777889999974
No 301
>KOG0649|consensus
Probab=81.64 E-value=43 Score=34.45 Aligned_cols=130 Identities=17% Similarity=0.210 Sum_probs=73.3
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE--CCEEEEEeccCCCeEEEeCCCCeEEe-CC---
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRVYDPSTNEWSS-AP--- 392 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~~~~W~~-~~--- 392 (1026)
.+.|+..||. ..+++.|..+.+.+..-. ...-+-|+++.- ++.| +.||.+|++.+||..|.+-.. +.
T Consensus 126 enSi~~AgGD-----~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 126 ENSILFAGGD-----GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred CCcEEEecCC-----eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCCccEEEEeccccceeEEecccc
Confidence 4678888885 367889999988765321 122244555553 3444 578899999999999987543 22
Q ss_pred --CCcCCcce--eEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCC
Q psy9769 393 --PMEARRST--LGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDG 464 (1026)
Q Consensus 393 --~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~ 464 (1026)
.+.+|..+ -++...+..-.|+||- ...-.|++.+.+-+.+-+.|.+ -+-+..+++ ..++||.+
T Consensus 199 ~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t~vfpipa~--v~~v~F~~d-~vl~~G~g 265 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSESTCVFPIPAR--VHLVDFVDD-CVLIGGEG 265 (325)
T ss_pred ChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCceEEEecccc--eeEeeeecc-eEEEeccc
Confidence 22222222 2444556666677763 2344566655555544444333 222333444 44555543
No 302
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=81.41 E-value=6.1 Score=33.58 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=46.2
Q ss_pred cEEEEEEEEEecceEEE-EeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 951 RLVWGVLKEKMPGGVRV-EFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 951 ~~v~G~V~~i~~~G~fV-~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
-.++|+|+.+.+.+.|. +++||..=++|.+== ...-.=..-+||.|++.+-..|..+.+++
T Consensus 7 ie~~G~V~e~Lp~~~frV~LenG~~vla~isGK----mR~~rIrIl~GD~V~VE~spYDltkGRIi 68 (87)
T PRK12442 7 IELDGIVDEVLPDSRFRVTLENGVEVGAYASGR----MRKHRIRILAGDRVTLELSPYDLTKGRIN 68 (87)
T ss_pred EEEEEEEEEECCCCEEEEEeCCCCEEEEEeccc----eeeeeEEecCCCEEEEEECcccCCceeEE
Confidence 46899999999999775 999998888776521 11111235699999999999998888775
No 303
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.73 E-value=57 Score=35.63 Aligned_cols=148 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred EEEEEECCCCcEEEcCCCCccccceeeEEE-CCEEEEEeccCCCeE-EEeCCCCeEEeCCCCcCCcceeEEEEECCEEEE
Q psy9769 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFL-HEKVYAVGGFNGSLR-VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYA 412 (1026)
Q Consensus 335 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~-~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 412 (1026)
.++.=.-.-.+|+.+..-+.. .-..+... +|. ||.-|..+.++ ..|+-...|.........|-......-++.|++
T Consensus 125 ~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~-~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~ 202 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSETSG-SINDITRSSDGR-YVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM 202 (302)
T ss_dssp -EEEESSTTSSEEEEE-S-----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE
T ss_pred cEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCc-EEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE
Confidence 455544556789986542222 22223333 455 55445666665 478988899887654344433333334778888
Q ss_pred EeccCCCCCCCEEEEEE--CCCCcEEEcc-CCCCCcceeEEEEE--CCEEEEEeCCCceeeEEcCcccEEEeec---CCC
Q psy9769 413 VGGFDGSSGLNSAEVYD--PSTEKWNMIA-PMSTRRSSVGVGVL--NGCLYAENLDGRILGCVKEITDWGLIIE---LPN 484 (1026)
Q Consensus 413 ~GG~~~~~~~~~v~~yd--~~~~~W~~~~-~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~W~~~~~---lP~ 484 (1026)
+. ..+ .+..=+ -...+|.+.. +.+...++.--..+ ++.+|+.||.+.+..-.+..++|..... .|.
T Consensus 203 ~~-~Gg-----~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 203 LA-RGG-----QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPS 276 (302)
T ss_dssp EE-TTT-----EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS
T ss_pred Ee-CCc-----EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCC
Confidence 64 221 233333 3456687632 22222232222333 6899999999988777778899988854 455
Q ss_pred cccceE
Q psy9769 485 FLSASV 490 (1026)
Q Consensus 485 ~~~g~~ 490 (1026)
.++..+
T Consensus 277 n~~~i~ 282 (302)
T PF14870_consen 277 NLYRIV 282 (302)
T ss_dssp ---EEE
T ss_pred ceEEEE
Confidence 554444
No 304
>KOG1036|consensus
Probab=80.43 E-value=32 Score=36.60 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=70.0
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEE
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAV 413 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 413 (1026)
.++..||...+.-... ......-..++..+..=.+.||.++.+.+||..+..=..+..-..+-.+-.-. +.....+.
T Consensus 35 gslrlYdv~~~~l~~~--~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~~vIs 111 (323)
T KOG1036|consen 35 GSLRLYDVPANSLKLK--FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVGCVIS 111 (323)
T ss_pred CcEEEEeccchhhhhh--eecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCceEEEEee-ccCCeEEE
Confidence 4677888877732221 11111113344556555567999999999999988765555332222111111 23344578
Q ss_pred eccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCCceeeEEcC
Q psy9769 414 GGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKE 472 (1026)
Q Consensus 414 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~ 472 (1026)
||++ ..+..+|+....- ......+-.-.++.+.+++|.|-+-.-.+.+||..
T Consensus 112 gsWD-----~~ik~wD~R~~~~--~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 112 GSWD-----KTIKFWDPRNKVV--VGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cccC-----ccEEEEecccccc--ccccccCceEEEEeccCCEEEEeecCceEEEEEcc
Confidence 8887 5788999976221 11222233444555556655553333455556553
No 305
>PRK04792 tolB translocation protein TolB; Provisional
Probab=80.35 E-value=52 Score=38.51 Aligned_cols=101 Identities=14% Similarity=0.032 Sum_probs=59.7
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEEC-CEEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-E
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLH-EKVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS-L 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~ 409 (1026)
..++.+|..+.+-+.+...+......+ ..-+ ..|++....++ +++.+|..+++++.+......- ......-+| .
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~-wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~-~~p~wSpDG~~ 319 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPR-FSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAID-TEPSWHPDGKS 319 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCee-ECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCc-cceEECCCCCE
Confidence 579999999888777765543222221 2223 45665544444 5888999998888775432111 111222344 4
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
|++....++ ...++.+|+.+++++.+.
T Consensus 320 I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt 346 (448)
T PRK04792 320 LIFTSERGG---KPQIYRVNLASGKVSRLT 346 (448)
T ss_pred EEEEECCCC---CceEEEEECCCCCEEEEe
Confidence 554432222 268999999999998775
No 306
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=79.92 E-value=9.4 Score=31.07 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=45.0
Q ss_pred EEEEEEEEEecceEE-EEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 952 LVWGVLKEKMPGGVR-VEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 952 ~v~G~V~~i~~~G~f-V~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
.+.|.|+...+.|.| |++++|..=++|.+= +...-.-...+||.|++.+-..|..+..++
T Consensus 6 e~~G~V~e~L~~~~f~V~l~ng~~vla~i~G----Kmr~~rI~I~~GD~V~Ve~spyd~tkgrIi 66 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELENGHEVLAHISG----KIRMHYIRILPGDKVKVELSPYDLTRGRIT 66 (68)
T ss_pred EEEEEEEEECCCCEEEEEECCCCEEEEEecC----cchhccEEECCCCEEEEEECcccCCcEeEE
Confidence 578999999999976 599999888887652 111122346799999999888887776654
No 307
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.78 E-value=50 Score=34.57 Aligned_cols=136 Identities=16% Similarity=0.217 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEE-cCCCCccccceeeEEEC-CEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCc
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQS-VAEMPTRRCRAGLVFLH-EKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARR 398 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r 398 (1026)
.+++.|+.+ ..+..||..+.+-.. +.. ....-.++.... +.+++.|+.++.+.+||..+.+- ...+....
T Consensus 106 ~~~~~~~~~----~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~ 177 (289)
T cd00200 106 RILSSSSRD----KTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKC--VATLTGHT 177 (289)
T ss_pred CEEEEecCC----CeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccccc--ceeEecCc
Confidence 455555522 468889987543322 221 111122233333 45555555588999999875431 11111111
Q ss_pred -ceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCC-CCCcceeEEEEE-CCEEEEEeC-CCceeeEEc
Q psy9769 399 -STLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPM-STRRSSVGVGVL-NGCLYAENL-DGRILGCVK 471 (1026)
Q Consensus 399 -~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~lyv~GG-~~~~~~~~~ 471 (1026)
.-.++... ++..+++|+.+ ..+..||+.+.+... .+ .....-.+++.. ++.+++.++ .+.+.-++.
T Consensus 178 ~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 178 GEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKCLG--TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred cccceEEECCCcCEEEEecCC-----CcEEEEECCCCceec--chhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 11222222 44355555543 468899987644332 22 111122223333 356666666 455544444
No 308
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=79.40 E-value=4.9 Score=35.17 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=51.4
Q ss_pred CCCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 940 PLTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 940 ~~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|+-..-+ ..|.+|.|+|..+.+.-++|.|+.-...+++..+. +. +.|..|..|+.++.+..-...+|
T Consensus 15 ~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~------~~-~~y~~G~rV~lrLkdlELs~~FL 81 (104)
T PF10246_consen 15 PFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV------NG-EKYVRGSRVRLRLKDLELSAHFL 81 (104)
T ss_pred hhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc------cc-cccccCCEEEEEECCHhhhhhhc
Confidence 3334444 35999999999999999999999999999997654 22 45899999999987665444444
No 309
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=79.40 E-value=2.4 Score=48.40 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=42.2
Q ss_pred cccCccccccccccccc--ceeeeecccceeeeeeccc------------------------cccCceEEEEEeee
Q psy9769 562 LETGLVLPACVHSKEDH--GYLLDVGVKNTRAFIKYDS------------------------VILGQIVTCMISKI 611 (1026)
Q Consensus 562 l~~G~~v~g~V~sv~d~--g~~v~~G~~~~~gf~~~~~------------------------~~~G~~v~~~v~~~ 611 (1026)
...|.+..|.|.++.++ |++||+|. +-.||+|.++ +++||.+.|.|.+-
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke 97 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKE 97 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeC
Confidence 45799999999999999 99999985 4589999865 56799999999883
No 310
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=79.11 E-value=77 Score=35.92 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=83.1
Q ss_pred EEEEEECC--CCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCC--eEEeCCCC-cCCcceeEEEEECCE
Q psy9769 335 SVECYDFK--TERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTN--EWSSAPPM-EARRSTLGVAVLNSL 409 (1026)
Q Consensus 335 ~~~~yd~~--~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~--~W~~~~~~-p~~r~~~~~~~~~~~ 409 (1026)
.++|||+. +..|+.-.+.. ++..-..++.++.+|+.- .++.++.+|..+. .|+.-.+. ...+.....+..++.
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~ 199 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGGS-PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT 199 (370)
T ss_pred eEEEEECCCCcEEEEEecCCC-eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecce
Confidence 79999995 44687644332 444455566667777653 4577888888865 48753332 233333333356777
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCc--EEEccCCC--------CCcceeEEEEECCEEEEEeCCCceeeEEcCccc--EE
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMS--------TRRSSVGVGVLNGCLYAENLDGRILGCVKEITD--WG 477 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p--------~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~--W~ 477 (1026)
+|+-... . ...++.+|+.+++ |+.-...+ .+......+..++.+|.....+....++..+.+ |.
T Consensus 200 vy~~~~~---~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~ 275 (370)
T COG1520 200 VYVGSDG---Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWS 275 (370)
T ss_pred EEEecCC---C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEE
Confidence 7765321 1 2368899997664 87432222 133344555566777666666667777766533 87
Q ss_pred Eeec
Q psy9769 478 LIIE 481 (1026)
Q Consensus 478 ~~~~ 481 (1026)
.-.+
T Consensus 276 ~~~~ 279 (370)
T COG1520 276 FPAG 279 (370)
T ss_pred Eecc
Confidence 7755
No 311
>KOG3840|consensus
Probab=78.65 E-value=25 Score=37.07 Aligned_cols=82 Identities=17% Similarity=0.294 Sum_probs=57.1
Q ss_pred cEEEEECCEEEEEEhhhhhccChh-hHhhhc-C--Cc-cCcccEEEe-cCCCHHHHHHHhhheecceeeech-hhHHHHH
Q psy9769 67 DVKLIADGVEVAAHKMVLAACSPY-FHAMFI-S--FE-ESKQERIVL-KGVDPNALKLLIDYVYSCEIYVTE-ENVQMLL 139 (1026)
Q Consensus 67 Dv~i~v~~~~~~~Hr~vL~~~S~y-F~~mf~-~--~~-e~~~~~i~l-~~~~~~~f~~~l~~~Ytg~~~i~~-~~v~~ll 139 (1026)
-++..+++..|-..+.+|.+.-.- .-.||. + |. .....+.++ .+++..+|+++|+|--+|.+..++ -.+-+|-
T Consensus 97 ~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 97 KVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred ceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 488889999999999998864221 124555 2 21 222335555 479999999999999999887654 3567777
Q ss_pred HHHHhcCch
Q psy9769 140 PAANLLQLT 148 (1026)
Q Consensus 140 ~~A~~l~l~ 148 (1026)
+++|+|.++
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 777777665
No 312
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.47 E-value=1e+02 Score=33.10 Aligned_cols=122 Identities=14% Similarity=0.214 Sum_probs=70.7
Q ss_pred CcEEEEEECCCCc----EEEcCCCCccccceee---EE---ECCEEEEEeccC--C-CeEEEeCCCCeEEeCCCCcCCcc
Q psy9769 333 IRSVECYDFKTER----WQSVAEMPTRRCRAGL---VF---LHEKVYAVGGFN--G-SLRVYDPSTNEWSSAPPMEARRS 399 (1026)
Q Consensus 333 ~~~~~~yd~~~~~----W~~~~~~p~~r~~~~~---~~---~~~~iyv~GG~~--~-~~~~yd~~~~~W~~~~~~p~~r~ 399 (1026)
.+.++.||..+++ |..-- ..++...+= .. +++.||+.=+-. + -+|..|..+..-+.+..-|.+.
T Consensus 77 YSHVH~yd~e~~~VrLLWkesi--h~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~K- 153 (339)
T PF09910_consen 77 YSHVHEYDTENDSVRLLWKESI--HDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLK- 153 (339)
T ss_pred cceEEEEEcCCCeEEEEEeccc--CCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcC-
Confidence 3568889988876 54322 222222221 12 357888774321 1 4677788888877777666553
Q ss_pred eeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcE--EEccC---C---C-CCcceeEEEEECCEEEEEe
Q psy9769 400 TLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW--NMIAP---M---S-TRRSSVGVGVLNGCLYAEN 461 (1026)
Q Consensus 400 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~---~---p-~~r~~~~~~~~~~~lyv~G 461 (1026)
++...+...|-+ .+.....+.+++||+.+++| +..+. + + ..|....++...+++|+|=
T Consensus 154 --G~~~~D~a~F~i--~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~ 220 (339)
T PF09910_consen 154 --GTLVHDYACFGI--NNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV 220 (339)
T ss_pred --ceEeeeeEEEec--cccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE
Confidence 233444444433 33334478999999999999 33321 1 1 1233446677788888873
No 313
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=78.38 E-value=2.5 Score=36.85 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=42.8
Q ss_pred ccCcccccccccccccceeeeecccceeeeeec-----cccccCceEEEEEeeeeec
Q psy9769 563 ETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKY-----DSVILGQIVTCMISKIKVA 614 (1026)
Q Consensus 563 ~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~-----~~~~~G~~v~~~v~~~~~~ 614 (1026)
.+|.+|.|+|..+.++.+.||||.+ +.+..+. +.|..|..|.+++...+-.
T Consensus 22 ~~gk~V~G~I~hvv~ddLYIDfG~K-FhcVc~rp~~~~~~y~~G~rV~lrLkdlELs 77 (104)
T PF10246_consen 22 PEGKIVIGKIFHVVDDDLYIDFGGK-FHCVCKRPAVNGEKYVRGSRVRLRLKDLELS 77 (104)
T ss_pred ccCCEEEEEEEEEecCceEEEeCCc-eeEEEecccccccccccCCEEEEEECCHhhh
Confidence 4789999999999999999999975 6777775 3389999999999876554
No 314
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=77.94 E-value=54 Score=37.21 Aligned_cols=114 Identities=19% Similarity=0.199 Sum_probs=70.7
Q ss_pred eEEECCEEEEEeccCCCeEEEeCCCCe--EEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCC--cEE
Q psy9769 361 LVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE--KWN 436 (1026)
Q Consensus 361 ~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~ 436 (1026)
.+..++++|+. -.++.++.+|+.+.. |+.................+|+||+-. .++ .+++||+.++ .|+
T Consensus 64 ~~~~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~-~~g-----~~y~ld~~~G~~~W~ 136 (370)
T COG1520 64 PADGDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGS-WDG-----KLYALDASTGTLVWS 136 (370)
T ss_pred cEeeCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEec-ccc-----eEEEEECCCCcEEEE
Confidence 47778899986 455689999999877 975432201111122223378877643 332 7899998544 587
Q ss_pred EccCCCCCcceeEEEEECCEEEEEeCCCceeeEEcCc--ccEEEeecC
Q psy9769 437 MIAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKEI--TDWGLIIEL 482 (1026)
Q Consensus 437 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~--~~W~~~~~l 482 (1026)
.-.+.. ++.....+..++.+|+....+.....+..+ ..|..-.+.
T Consensus 137 ~~~~~~-~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~ 183 (370)
T COG1520 137 RNVGGS-PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPA 183 (370)
T ss_pred EecCCC-eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCC
Confidence 655442 445555566677777775556677777765 448866554
No 315
>PRK05137 tolB translocation protein TolB; Provisional
Probab=77.80 E-value=1e+02 Score=35.94 Aligned_cols=102 Identities=13% Similarity=-0.016 Sum_probs=59.3
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccC--CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCE-
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFN--GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSL- 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~- 409 (1026)
..++.+|+.+.+...+...+...... ...-+| .|++....+ .+++.+|..+.....+...+..-. .....-+|+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~ 303 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQ 303 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC-ceeEcCCCCE
Confidence 68999999999888876654432222 222244 555444333 368888999888777664332111 122223454
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEccC
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP 440 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 440 (1026)
|+......+ ...++.+|..++..+.+..
T Consensus 304 i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 304 IVFESDRSG---SPQLYVMNADGSNPRRISF 331 (435)
T ss_pred EEEEECCCC---CCeEEEEECCCCCeEEeec
Confidence 443322111 3579999988877777653
No 316
>PRK13684 Ycf48-like protein; Provisional
Probab=77.74 E-value=27 Score=39.01 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=70.5
Q ss_pred CCcEEEcCCC-CccccceeeEEEC-CEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCC
Q psy9769 343 TERWQSVAEM-PTRRCRAGLVFLH-EKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSS 420 (1026)
Q Consensus 343 ~~~W~~~~~~-p~~r~~~~~~~~~-~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~ 420 (1026)
-.+|+.+... ..+...+.+..++ +.+|+.| ..+.+++=+-.-.+|+.+.... .-.-+.+....+..|+..|..+
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-- 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-- 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc--
Confidence 4589987532 1222223344444 4566654 4555665555567999876433 2233444444455555555433
Q ss_pred CCCEEEE-EECCCCcEEEccCCCCCcceeEEEEE-CCEEEEEeCCCceeeE-EcCcccEEEe
Q psy9769 421 GLNSAEV-YDPSTEKWNMIAPMSTRRSSVGVGVL-NGCLYAENLDGRILGC-VKEITDWGLI 479 (1026)
Q Consensus 421 ~~~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~-~~~~~~W~~~ 479 (1026)
.++. .|....+|+.+.. +..+.-.+++.. ++++|++|..+....- .+...+|...
T Consensus 194 ---~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 194 ---NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred ---eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence 2222 2445567998754 444444455443 6789999876654332 3444789865
No 317
>smart00284 OLF Olfactomedin-like domains.
Probab=77.67 E-value=61 Score=34.29 Aligned_cols=139 Identities=16% Similarity=0.254 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCCCCCcEEEEEEC----CCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDF----KTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPM 394 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~----~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~ 394 (1026)
++.+|++.+.. ...+.++.|.- ....+...-.+|.+-.+.+.++++|.+|.--.....+-.||+.+.+-.....+
T Consensus 34 ~~~~wv~~~~~-~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~L 112 (255)
T smart00284 34 KSLYWYMPLNT-RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLL 112 (255)
T ss_pred CceEEEEcccc-CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEecCCccEEEEECCCCcEEEEEec
Confidence 46899987653 22355666653 23344433457778888899999999999877677899999999876433334
Q ss_pred cCCc----c--------eeEEEEECCEEEEEeccCCCCCCCEEEEEECCC----CcEEEccCCCCCcceeEEEEECCEEE
Q psy9769 395 EARR----S--------TLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPST----EKWNMIAPMSTRRSSVGVGVLNGCLY 458 (1026)
Q Consensus 395 p~~r----~--------~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~ly 458 (1026)
|.+. . ..-.++-.+-|+|+=....+...--+-..||.+ .+|.. +.+.+..+ .+..+-|.||
T Consensus 113 p~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~sa~-naFmvCGvLY 189 (255)
T smart00284 113 NGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKRSAS-NAFMICGILY 189 (255)
T ss_pred CccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCccccc-ccEEEeeEEE
Confidence 4321 1 122334445566652221111112234556643 45765 33333333 4556678899
Q ss_pred EEe
Q psy9769 459 AEN 461 (1026)
Q Consensus 459 v~G 461 (1026)
++-
T Consensus 190 ~~~ 192 (255)
T smart00284 190 VTR 192 (255)
T ss_pred EEc
Confidence 985
No 318
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=77.15 E-value=16 Score=29.55 Aligned_cols=54 Identities=15% Similarity=0.069 Sum_probs=37.3
Q ss_pred EEEEEEEEec---ceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCe
Q psy9769 953 VWGVLKEKMP---GGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE 1011 (1026)
Q Consensus 953 v~G~V~~i~~---~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~ 1011 (1026)
.+|+|+...+ ||-+..-.++-+=++|.+++.... -..+++||.|++.+.. +++.
T Consensus 1 ~~G~V~~~~~~kgyGFI~~~~~~~diFfh~s~~~~~~----~~~l~~G~~V~F~~~~-~~~g 57 (66)
T PF00313_consen 1 MTGTVKWFDDEKGYGFITSDDGGEDIFFHISDLSGNG----FRSLKEGDRVEFEVEE-GKKG 57 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTSSSEEEEEGGGBCSSS----STS--TTSEEEEEEEE-CTTS
T ss_pred CeEEEEEEECCCCceEEEEcccceeEEeccccccccc----cccCCCCCEEEEEEEE-CCCC
Confidence 3799998865 554444444558999999996643 2457899999999887 5443
No 319
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=76.89 E-value=20 Score=37.98 Aligned_cols=139 Identities=18% Similarity=0.239 Sum_probs=84.1
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEEC-----CCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEE---
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDF-----KTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWS--- 389 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~-----~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~--- 389 (1026)
.++.+|++.|..+. .++.|.- ..+++...-.+|.+-.+.+.++++|.+|---....++-.||+.++.-.
T Consensus 29 ~~~~iy~~~~~~~~---~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN---TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CCCCEEEECccCCC---EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEE
Confidence 45689999886543 5555543 233344444577777888899999999988776778999999987644
Q ss_pred eCCCCc------CCc---ceeEEEEECCEEEEEeccCCCCCCCEEEEEECC----CCcEEEccCCCCCcceeEEEEECCE
Q psy9769 390 SAPPME------ARR---STLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPS----TEKWNMIAPMSTRRSSVGVGVLNGC 456 (1026)
Q Consensus 390 ~~~~~p------~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~----~~~W~~~~~~p~~r~~~~~~~~~~~ 456 (1026)
.++... ... ...-.++-..-|+|+=........-.+-..||. ..+|.. +.+.+..+ .+.++-|.
T Consensus 106 ~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k~~~~-naFmvCGv 182 (250)
T PF02191_consen 106 ELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPKRSAG-NAFMVCGV 182 (250)
T ss_pred ECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCchhhc-ceeeEeeE
Confidence 444211 111 112334445667777554433322334455664 346774 34443333 45566788
Q ss_pred EEEEeC
Q psy9769 457 LYAENL 462 (1026)
Q Consensus 457 lyv~GG 462 (1026)
||++..
T Consensus 183 LY~~~s 188 (250)
T PF02191_consen 183 LYATDS 188 (250)
T ss_pred EEEEEE
Confidence 999864
No 320
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=76.88 E-value=59 Score=36.04 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=68.7
Q ss_pred CCeEEEeCCCC-----eEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc-EEEccCCCCCcceeE
Q psy9769 376 GSLRVYDPSTN-----EWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK-WNMIAPMSTRRSSVG 449 (1026)
Q Consensus 376 ~~~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~r~~~~ 449 (1026)
|.+.+|+.... +++.+...+.+-.-.+.+.++++|.+.-| +.+..|+...++ |...+.+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 45778888874 56666554555556777888999777666 678899988888 998887777767778
Q ss_pred EEEECCEEEEEeCCCce--eeEEcCcccEEEeecCCC
Q psy9769 450 VGVLNGCLYAENLDGRI--LGCVKEITDWGLIIELPN 484 (1026)
Q Consensus 450 ~~~~~~~lyv~GG~~~~--~~~~~~~~~W~~~~~lP~ 484 (1026)
+.+.++.|++---...+ ..|+....+-..++.-+.
T Consensus 135 l~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~ 171 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQ 171 (321)
T ss_dssp EEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS
T ss_pred EeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCC
Confidence 88889977765544433 344554455666665433
No 321
>KOG1778|consensus
Probab=76.77 E-value=0.95 Score=49.12 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=102.7
Q ss_pred EEEECCEEEEEEhhhhhccChhhHhhhc-CCccCcccEEEecCCCHHHHHHHhhheecceeeechhh--HHHHHHHHHhc
Q psy9769 69 KLIADGVEVAAHKMVLAACSPYFHAMFI-SFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEEN--VQMLLPAANLL 145 (1026)
Q Consensus 69 ~i~v~~~~~~~Hr~vL~~~S~yF~~mf~-~~~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~~~--v~~ll~~A~~l 145 (1026)
++......+.+|+.+|...|+-|..+.. .-..+....+.+...+...+..+.+++|.. ++-...+ .+-++.+...+
T Consensus 30 ~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~ 108 (319)
T KOG1778|consen 30 IVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVY 108 (319)
T ss_pred hhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhh
Confidence 3334557889999999999999998766 423333455677788899999999999988 3333322 34566666788
Q ss_pred CchhHHhHHHHhhhc-ccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccc
Q psy9769 146 QLTDVRDACCDFLQC-QLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEE 202 (1026)
Q Consensus 146 ~l~~L~~~c~~~l~~-~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~ 202 (1026)
.++.++..|...+.. .++..+++..+..+..+....|..++...+...|....++..
T Consensus 109 ~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~ 166 (319)
T KOG1778|consen 109 VVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEK 166 (319)
T ss_pred hccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccC
Confidence 899999988888876 577888999999999999999999999999888877766433
No 322
>PRK00178 tolB translocation protein TolB; Provisional
Probab=76.72 E-value=82 Score=36.53 Aligned_cols=102 Identities=10% Similarity=-0.002 Sum_probs=58.8
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccC--CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFN--GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS- 408 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~- 408 (1026)
...++.+|..+++-+.+...+..-.. ....-+| +|++..-.+ .++++||..+..++.+..-+..-.. ....-+|
T Consensus 222 ~~~l~~~~l~~g~~~~l~~~~g~~~~-~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~~spDg~ 299 (430)
T PRK00178 222 RPRIFVQNLDTGRREQITNFEGLNGA-PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTE-PFWGKDGR 299 (430)
T ss_pred CCEEEEEECCCCCEEEccCCCCCcCC-eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcCC-eEECCCCC
Confidence 35799999999888777654421111 1112234 555443222 3688999999988877643221111 1122244
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
+|++.....+ ...++.+|+.+++++.+.
T Consensus 300 ~i~f~s~~~g---~~~iy~~d~~~g~~~~lt 327 (430)
T PRK00178 300 TLYFTSDRGG---KPQIYKVNVNGGRAERVT 327 (430)
T ss_pred EEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 5655432222 357999999998888765
No 323
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=76.42 E-value=1.2e+02 Score=34.16 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCC-----CcCC--cceeEEEEECCEEEEEec
Q psy9769 343 TERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPP-----MEAR--RSTLGVAVLNSLIYAVGG 415 (1026)
Q Consensus 343 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~~~~~iyv~GG 415 (1026)
.+.|+.+..+. -..--++.++|++|++ ...+.++.++..-. =.++++ +... +...-.+...|.+|++..
T Consensus 189 ~~~Wt~l~~~~--~~~~DIi~~kGkfYAv-D~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R 264 (373)
T PLN03215 189 GNVLKALKQMG--YHFSDIIVHKGQTYAL-DSIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVER 264 (373)
T ss_pred CCeeeEccCCC--ceeeEEEEECCEEEEE-cCCCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEE
Confidence 48999997422 2345688999999999 33467777774321 112221 1111 122346667899999987
Q ss_pred cCCCC------------CCC--EEEEEECCCCcEEEccCCC
Q psy9769 416 FDGSS------------GLN--SAEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 416 ~~~~~------------~~~--~v~~yd~~~~~W~~~~~~p 442 (1026)
..... ... .|+..|....+|.++.++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 42111 122 3445588889999988874
No 324
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=75.81 E-value=1.1e+02 Score=33.90 Aligned_cols=144 Identities=8% Similarity=-0.023 Sum_probs=69.9
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECC-CCcEEEcCCCCccccceeeEEE--CCEEEEEeccCCCeEEEeCCCCe--EEeCCC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFK-TERWQSVAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRVYDPSTNE--WSSAPP 393 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~-~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~ 393 (1026)
++.+|+.++. ...+..|+.. +.+++.....+.+..-+.++.. +..+|+.+-.++.+.+|+..++. ......
T Consensus 46 ~~~lyv~~~~----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 46 KRHLYVGVRP----EFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred CCEEEEEECC----CCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 3467775442 2456667665 4567655443332222223333 34688776556788888876431 122222
Q ss_pred CcCCcceeEEEEE-CC-EEEEEeccCCCCCCCEEEEEECCCC-cEEEcc----CCCCCcceeEEEEE--CCEEEEEeC-C
Q psy9769 394 MEARRSTLGVAVL-NS-LIYAVGGFDGSSGLNSAEVYDPSTE-KWNMIA----PMSTRRSSVGVGVL--NGCLYAENL-D 463 (1026)
Q Consensus 394 ~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~~----~~p~~r~~~~~~~~--~~~lyv~GG-~ 463 (1026)
++.....|+++.. ++ .+|+..- ..+.+..||+.++ ...... ..+.....+.++.. +..+|+... .
T Consensus 122 ~~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 122 IEGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred ccCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC
Confidence 2222223444433 33 5666542 1267999998653 222110 11211112233333 347888864 5
Q ss_pred CceeeEEc
Q psy9769 464 GRILGCVK 471 (1026)
Q Consensus 464 ~~~~~~~~ 471 (1026)
+.+..|+.
T Consensus 197 ~~v~v~~~ 204 (330)
T PRK11028 197 SSVDVWQL 204 (330)
T ss_pred CEEEEEEE
Confidence 55555544
No 325
>PRK04922 tolB translocation protein TolB; Provisional
Probab=75.80 E-value=1.3e+02 Score=34.83 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=58.5
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccC--CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCE
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFN--GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSL 409 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 409 (1026)
...++.+|..+++...+...+..... ....-+| +|++....+ .+++++|+.++....+..-+..-.. ....-+|+
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~~~-~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~-~~~spDG~ 304 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGINGA-PSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTE-PTWAPDGK 304 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCccC-ceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccc-eEECCCCC
Confidence 35789999998888777665432211 1222234 565543333 3688999998877666533211111 12223454
Q ss_pred -EEEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 410 -IYAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 410 -iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
|++.....+ ...++.+|..+++++.+.
T Consensus 305 ~l~f~sd~~g---~~~iy~~dl~~g~~~~lt 332 (433)
T PRK04922 305 SIYFTSDRGG---RPQIYRVAASGGSAERLT 332 (433)
T ss_pred EEEEEECCCC---CceEEEEECCCCCeEEee
Confidence 544432222 257899999888887765
No 326
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=74.98 E-value=18 Score=38.28 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=56.3
Q ss_pred CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEE--CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCC
Q psy9769 365 HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL--NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 442 (1026)
++.+|+..-..+.+++||+.+.+-..... +. ..+++.. ++.+|+... .....+|+.+++|+.+...+
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEES-SS---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEec-CC---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeecc
Confidence 58899987778899999999987654332 22 3344444 788988865 23466799999999887653
Q ss_pred -----CCcceeEEEEECCEEEEE
Q psy9769 443 -----TRRSSVGVGVLNGCLYAE 460 (1026)
Q Consensus 443 -----~~r~~~~~~~~~~~lyv~ 460 (1026)
..+.+-.++.-+|++|+-
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t 102 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVT 102 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEE
T ss_pred CCCcccCCCceEEEcCCCCEEEE
Confidence 233333334447888886
No 327
>PTZ00420 coronin; Provisional
Probab=74.32 E-value=1e+02 Score=36.96 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=54.0
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEE-EcCCCCccccceeeE-EECCEEEEEeccCCCeEEEeCCCCeEE-eCCCCcCC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQ-SVAEMPTRRCRAGLV-FLHEKVYAVGGFNGSLRVYDPSTNEWS-SAPPMEAR 397 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~yd~~~~~W~-~~~~~p~~ 397 (1026)
.+++.||.+ ..+..||..+.+=. .+. .+. .-.+++ ..+|.+++.|+.++.+.+||+.+.+=. .+..-...
T Consensus 139 ~iLaSgS~D----gtIrIWDl~tg~~~~~i~-~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~ 211 (568)
T PTZ00420 139 YIMCSSGFD----SFVNIWDIENEKRAFQIN-MPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGG 211 (568)
T ss_pred eEEEEEeCC----CeEEEEECCCCcEEEEEe-cCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCC
Confidence 455566654 36778888765411 111 111 112222 236788888888889999999876421 11110111
Q ss_pred cceeEEE----EECCEEEEEeccCCCCCCCEEEEEECCC
Q psy9769 398 RSTLGVA----VLNSLIYAVGGFDGSSGLNSAEVYDPST 432 (1026)
Q Consensus 398 r~~~~~~----~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 432 (1026)
+...... .-++..++.+|.++. ....+..||+.+
T Consensus 212 ~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~ 249 (568)
T PTZ00420 212 KNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKN 249 (568)
T ss_pred ceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCC
Confidence 1111111 124455666666542 235788999864
No 328
>smart00284 OLF Olfactomedin-like domains.
Probab=73.76 E-value=87 Score=33.16 Aligned_cols=127 Identities=19% Similarity=0.296 Sum_probs=72.6
Q ss_pred CCCcEEEEEECCCCcEEEcCCCCccc----c--------ceeeEEECCEEEEE---eccCCCe--EEEeCCC----CeEE
Q psy9769 331 KAIRSVECYDFKTERWQSVAEMPTRR----C--------RAGLVFLHEKVYAV---GGFNGSL--RVYDPST----NEWS 389 (1026)
Q Consensus 331 ~~~~~~~~yd~~~~~W~~~~~~p~~r----~--------~~~~~~~~~~iyv~---GG~~~~~--~~yd~~~----~~W~ 389 (1026)
.....+..||..+++-.....+|.+. . ..-.++-.+-|+|+ .+..+.+ -..||.+ ++|.
T Consensus 91 ~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~ 170 (255)
T smart00284 91 FNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWI 170 (255)
T ss_pred cCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEE
Confidence 34578999999998765444444321 1 12234445556555 3333433 3577765 4576
Q ss_pred eCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEcc-CCCCCcceeEEEEE---CCEEEEEe
Q psy9769 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIA-PMSTRRSSVGVGVL---NGCLYAEN 461 (1026)
Q Consensus 390 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~lyv~G 461 (1026)
. +.+.+.. ..+.++-|.||++-.. ......-.+.||+.+++=..+. +++.+...+++..+ +.+||+.-
T Consensus 171 T--~~~k~sa-~naFmvCGvLY~~~s~-~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 171 T--TYNKRSA-SNAFMICGILYVTRSL-GSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred c--CCCcccc-cccEEEeeEEEEEccC-CCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 5 3333332 2455667899998531 1222345778999887744322 34444555666666 57899874
No 329
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=73.18 E-value=4.4 Score=47.43 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred cCCCCcEEEEEEEEEecce--EEEEeCCCceeeEeccccCcccccC-----cccccccCCEEEEEEEEEe
Q psy9769 946 HTKPGRLVWGVLKEKMPGG--VRVEFDGDISGVFPTSAMSQATRTL-----VYTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 946 ~~~~G~~v~G~V~~i~~~G--~fV~~~~~i~Gl~~~~~ls~~~~~~-----~~~~~~~G~~V~~~Vl~vd 1008 (1026)
...+|+++.|.|++|.+.- +||.++.+=.||+|.+++.+ +... .+..++.||.+-+.|++-.
T Consensus 34 ~~~~gniy~grv~~i~p~~~aafvdig~~r~gfl~~~~~~~-~~~~~~~~~i~~~lr~~~~~~Vqv~ke~ 102 (487)
T COG1530 34 EQIVGNIYKGRVTRVLPSLEAAFVDIGLERNGFLHLSEIVP-YFRAVLEEKIKVRLRGGQATLVQVVKEP 102 (487)
T ss_pred EeeecCceEEEecccCccchhheeeccCCccceEEecccch-hhhhcccccceeeecCCceEEEEEEeec
Confidence 3456999999999998765 99999999999999999987 2222 2468999999999888653
No 330
>KOG0310|consensus
Probab=73.11 E-value=87 Score=35.57 Aligned_cols=133 Identities=14% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCC-cEEEcCCCCccccceeeEEE-C-CEEEEEeccCCCeEEEeCCCCeEEeCCCC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTE-RWQSVAEMPTRRCRAGLVFL-H-EKVYAVGGFNGSLRVYDPSTNEWSSAPPM 394 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~yd~~~~~W~~~~~~ 394 (1026)
.++.|++.||+++ .+..||..+. .|..--+--.|... ++.+ + ..|-..|| +++.+||..++. ..+..|
T Consensus 164 ~~~hivvtGsYDg----~vrl~DtR~~~~~v~elnhg~pVe~--vl~lpsgs~iasAgG--n~vkVWDl~~G~-qll~~~ 234 (487)
T KOG0310|consen 164 ANDHIVVTGSYDG----KVRLWDTRSLTSRVVELNHGCPVES--VLALPSGSLIASAGG--NSVKVWDLTTGG-QLLTSM 234 (487)
T ss_pred CCCeEEEecCCCc----eEEEEEeccCCceeEEecCCCceee--EEEcCCCCEEEEcCC--CeEEEEEecCCc-eehhhh
Confidence 4678999999875 5677887766 45432121222222 2222 3 34444455 357788877543 122222
Q ss_pred c-CCcceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEE-CCEEEEEeCCCce
Q psy9769 395 E-ARRSTLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVL-NGCLYAENLDGRI 466 (1026)
Q Consensus 395 p-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~ 466 (1026)
. ....-.++... ++.=.+.||.++ .|-+|| +..|+.+-.+..|-.-.++++. ++.-.++|..++.
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGL 302 (487)
T ss_pred hcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccceEEEEeeecccceeeEEecCCCceEEEecccce
Confidence 2 11111112222 445566777764 577898 5678877755444333344433 6677777875544
No 331
>PLN00181 protein SPA1-RELATED; Provisional
Probab=72.12 E-value=67 Score=40.77 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=49.7
Q ss_pred EEEEEECCCCcEEEcCCCCc-cccceeeEEE--CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEE---ECC
Q psy9769 335 SVECYDFKTERWQSVAEMPT-RRCRAGLVFL--HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAV---LNS 408 (1026)
Q Consensus 335 ~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~~ 408 (1026)
.+..||..+++.. ..+.. ...-.+++.. ++.+++.||.++.+.+||..+..-. ..+... ....++. .++
T Consensus 556 ~v~lWd~~~~~~~--~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~--~~~~~~-~~v~~v~~~~~~g 630 (793)
T PLN00181 556 VVQVWDVARSQLV--TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI--GTIKTK-ANICCVQFPSESG 630 (793)
T ss_pred eEEEEECCCCeEE--EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE--EEEecC-CCeEEEEEeCCCC
Confidence 5677777654322 21211 1112233332 5678889999999999998765421 111111 1112222 257
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCC
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTE 433 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~ 433 (1026)
..++.|+.+ ..+..||+.+.
T Consensus 631 ~~latgs~d-----g~I~iwD~~~~ 650 (793)
T PLN00181 631 RSLAFGSAD-----HKVYYYDLRNP 650 (793)
T ss_pred CEEEEEeCC-----CeEEEEECCCC
Confidence 788888765 47889998754
No 332
>KOG0289|consensus
Probab=71.84 E-value=91 Score=34.95 Aligned_cols=112 Identities=13% Similarity=0.221 Sum_probs=62.7
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEE--CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcc-eeEEEEE--CC
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRS-TLGVAVL--NS 408 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~ 408 (1026)
..+-+||..+.. .++..|..-.--....+ ||+-.+.+-.++.+.+||..... ..+.++.+-. ......+ -|
T Consensus 369 ~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--ccceeeccccccceeEEEcCCC
Confidence 356778887765 45555542222222222 45555555555669999998654 3333332221 2233334 35
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEEC
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLN 454 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 454 (1026)
+..+++|.+ -.|+.|+-.+.+|+.+..++.--.-...+.++
T Consensus 445 t~L~~~g~~-----l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 445 TYLGIAGSD-----LQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred CeEEeecce-----eEEEEEecccccceeeehhhhcccccceeeec
Confidence 666777643 45777788899999988766443333444443
No 333
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=71.42 E-value=12 Score=30.09 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=35.7
Q ss_pred CcEEEEEEEEEecce----EEEEeCCC--ceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGG----VRVEFDGD--ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G----~fV~~~~~--i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
-..+.|+|..+.+.| +.+.+.++ +...++.... .+-.+++||+|.+ .+++.+++|
T Consensus 4 ~N~l~g~V~~ie~~g~~~~v~~~~~~~~~l~a~it~~~~-------~~L~L~~G~~V~~---~ik~~~v~l 64 (64)
T PF03459_consen 4 RNQLPGTVESIENLGSEVEVTLDLGGGETLTARITPESA-------EELGLKPGDEVYA---SIKASSVHL 64 (64)
T ss_dssp SEEEEEEEEEEEESSSEEEEEEEETTSEEEEEEEEHHHH-------HHCT-STT-EEEE---EE-GGG-EE
T ss_pred CcEEEEEEEEEEECCCeEEEEEEECCCCEEEEEEcHHHH-------HHcCCCCCCEEEE---EEehhheEC
Confidence 467899999999999 66677664 6677766544 1223789999986 455655543
No 334
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.57 E-value=2.1e+02 Score=32.74 Aligned_cols=148 Identities=16% Similarity=0.088 Sum_probs=74.2
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCc-cccceeeEEEC-CEEEEEeccCCCeEEEeCCCCeEEeCCCCc-
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPT-RRCRAGLVFLH-EKVYAVGGFNGSLRVYDPSTNEWSSAPPME- 395 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~-~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p- 395 (1026)
++..|++|-. ..++.=+-.-.+|+.++..+. +-..+....++ +..|++| ..+.+++-+-.-.+|+.....+
T Consensus 146 ~~~g~~vG~~-----G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg-~~G~v~~S~D~G~tW~~~~~~t~ 219 (398)
T PLN00033 146 GKEGWIIGKP-----AILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVT-DEGAIYVTSNAGRNWKAAVEETV 219 (398)
T ss_pred CCEEEEEcCc-----eEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEEEe-ccceEEEECCCCCCceEcccccc
Confidence 4556666532 122222334578998754221 11122333444 5677776 4555666555567898762111
Q ss_pred ---CCc--------------ceeEEEE-ECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEE
Q psy9769 396 ---ARR--------------STLGVAV-LNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCL 457 (1026)
Q Consensus 396 ---~~r--------------~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l 457 (1026)
..+ ...++.. -++.++++|-.. +-....|.....|+.+..-...+........++.+
T Consensus 220 ~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-----~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l 294 (398)
T PLN00033 220 SATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRG-----NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGL 294 (398)
T ss_pred cccccccccccccccceeccceeeEEEcCCCCEEEEECCc-----cEEEecCCCCcceEEecCCCccceeeeeEcCCCCE
Confidence 111 1111121 234455554211 12223444444599776433333222223458899
Q ss_pred EEEeCCCceeeEEcCcccEE
Q psy9769 458 YAENLDGRILGCVKEITDWG 477 (1026)
Q Consensus 458 yv~GG~~~~~~~~~~~~~W~ 477 (1026)
+++|..+.+..-.+...+|+
T Consensus 295 ~l~g~~G~l~~S~d~G~~~~ 314 (398)
T PLN00033 295 WLLTRGGGLYVSKGTGLTEE 314 (398)
T ss_pred EEEeCCceEEEecCCCCccc
Confidence 99998888777766666664
No 335
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=69.27 E-value=4.6 Score=49.15 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=53.0
Q ss_pred CceEEeeeecccCCcceeeccccceeeccCcccccc---hh-------------hhhhcccccccccceeeeeccccceE
Q psy9769 648 GMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMST---AY-------------NAKYLTNKRVDLDCSVLYVCPRHFHV 711 (1026)
Q Consensus 648 G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~---~~-------------~~~~~~G~~~~~~~~Il~vd~~~~~v 711 (1026)
|....|.|..+.++|++|.+...++.||++...+.. .+ +..|+.|++| +++|..+|..++++
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v--~V~v~~vd~~~~~i 635 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVI--DVVLTEVRMETRSI 635 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEE--EEEEEEeccccCcE
Confidence 458999999999999999997678999986666643 11 2258999999 99999999999888
Q ss_pred Eee
Q psy9769 712 YLS 714 (1026)
Q Consensus 712 ~lS 714 (1026)
.+.
T Consensus 636 ~~~ 638 (639)
T TIGR02062 636 IAR 638 (639)
T ss_pred eee
Confidence 753
No 336
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=69.09 E-value=34 Score=32.06 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=52.8
Q ss_pred EEECCEEEEEecc----CCCeEEEeCCCCeEEeCCC---CcCCcceeEEEEECCEEEEEeccCCCC-CCCEEEEE-ECCC
Q psy9769 362 VFLHEKVYAVGGF----NGSLRVYDPSTNEWSSAPP---MEARRSTLGVAVLNSLIYAVGGFDGSS-GLNSAEVY-DPST 432 (1026)
Q Consensus 362 ~~~~~~iyv~GG~----~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~y-d~~~ 432 (1026)
+.+||.+|-..-. ...+-.||..+.+|+.++. ..........+.++|+|-++.-..... ..-++|+. |...
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k 81 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEK 81 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecccc
Confidence 4578888877654 2356779999999987653 234555667888999998876543322 23466666 4567
Q ss_pred CcEEEcc
Q psy9769 433 EKWNMIA 439 (1026)
Q Consensus 433 ~~W~~~~ 439 (1026)
.+|++..
T Consensus 82 ~~Wsk~~ 88 (129)
T PF08268_consen 82 QEWSKKH 88 (129)
T ss_pred ceEEEEE
Confidence 8898654
No 337
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=68.63 E-value=7 Score=36.16 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=36.2
Q ss_pred cCcccccccccccccceeeeecccceeeeeeccc-------------------------cccCceEEEEEeeeee
Q psy9769 564 TGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDS-------------------------VILGQIVTCMISKIKV 613 (1026)
Q Consensus 564 ~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~~~-------------------------~~~G~~v~~~v~~~~~ 613 (1026)
+|.++.|+|.+-+.+|+.|++|+-. +=|+|... +..|+.|+++|..+.=
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFd-dI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~f 76 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFD-DIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEIF 76 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEE-EEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccc-cEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEEE
Confidence 5899999999999999999998633 45666411 6789999999987644
No 338
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=68.59 E-value=1.4e+02 Score=30.26 Aligned_cols=135 Identities=16% Similarity=0.101 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcE--EEc----CCCCccccceeeEEEC-CEEEEEeccCCCeEEEeCCCCeEE--
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERW--QSV----AEMPTRRCRAGLVFLH-EKVYAVGGFNGSLRVYDPSTNEWS-- 389 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W--~~~----~~~p~~r~~~~~~~~~-~~iyv~GG~~~~~~~yd~~~~~W~-- 389 (1026)
.+.+|++-| +.+|+++...... ..+ +.+|.+ -..+....+ +++|+|-|. ..++|+..+..+.
T Consensus 16 ~g~~y~FkG------~~~w~~~~~~~~~~p~~I~~~w~~~p~~-IDAa~~~~~~~~~yfFkg~--~yw~~~~~~~~~~~P 86 (194)
T cd00094 16 RGELYFFKG------RYFWRLSPGKPPGSPFLISSFWPSLPSP-VDAAFERPDTGKIYFFKGD--KYWVYTGKNLEPGYP 86 (194)
T ss_pred CCEEEEEeC------CEEEEEeCCCCCCCCeEhhhhCCCCCCC-ccEEEEECCCCEEEEECCC--EEEEEcCcccccCCC
Confidence 367888876 3667777642111 111 122221 122222223 899999553 5778876642221
Q ss_pred -eCC--CCcC--CcceeEEEEE--CCEEEEEeccCCCCCCCEEEEEECCCCcEEE-----c----cCCCCCcceeEEEEE
Q psy9769 390 -SAP--PMEA--RRSTLGVAVL--NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNM-----I----APMSTRRSSVGVGVL 453 (1026)
Q Consensus 390 -~~~--~~p~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p~~r~~~~~~~~ 453 (1026)
.+. .+|. ..-. ++... ++++|++.| +..++||..+++... + +.+|.. --++...
T Consensus 87 k~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~--idaa~~~ 156 (194)
T cd00094 87 KPISDLGFPPTVKQID-AALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVPDK--VDAAFRW 156 (194)
T ss_pred cchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcCCC--cceeEEe
Confidence 111 1111 1112 22333 689999988 578888876554321 1 122222 1233334
Q ss_pred -CCEEEEEeCCCceeeEEcCc
Q psy9769 454 -NGCLYAENLDGRILGCVKEI 473 (1026)
Q Consensus 454 -~~~lyv~GG~~~~~~~~~~~ 473 (1026)
++++|.+-|. ..+.|+...
T Consensus 157 ~~~~~yfF~g~-~y~~~d~~~ 176 (194)
T cd00094 157 LDGYYYFFKGD-QYWRFDPRS 176 (194)
T ss_pred CCCcEEEEECC-EEEEEeCcc
Confidence 4899999774 445555544
No 339
>PRK00178 tolB translocation protein TolB; Provisional
Probab=68.41 E-value=1e+02 Score=35.71 Aligned_cols=102 Identities=9% Similarity=0.050 Sum_probs=59.1
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEEC-CEEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEEC-CE
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLH-EKVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLN-SL 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~ 409 (1026)
.+++.||..+..++.+..-+..-..+ ...-+ ..||......+ +++.+|..++.++.+.... .........-+ +.
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~ 344 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEP-FWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKT 344 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCe-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCE
Confidence 57999999999988876533211111 11223 45665543333 6888899888887764221 11111122224 45
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEccC
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP 440 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 440 (1026)
|++....++ ...++.+|+.++.++.+..
T Consensus 345 i~~~~~~~~---~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 345 LVMVHRQDG---NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred EEEEEccCC---ceEEEEEECCCCCEEEccC
Confidence 555443222 2469999999998888765
No 340
>PLN00181 protein SPA1-RELATED; Provisional
Probab=67.62 E-value=86 Score=39.82 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=36.5
Q ss_pred CCEEEEEeccCCCeEEEeCCCCe--EEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCC
Q psy9769 365 HEKVYAVGGFNGSLRVYDPSTNE--WSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPST 432 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 432 (1026)
++..++.|+.++.+.+||..+.. ...+.. ....-..+...++..++.|+.+ ..+-.||+.+
T Consensus 629 ~g~~latgs~dg~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D-----~~ikiWd~~~ 691 (793)
T PLN00181 629 SGRSLAFGSADHKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTD-----NTLKLWDLSM 691 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCCccceEecC--CCCCEEEEEEeCCCEEEEEECC-----CEEEEEeCCC
Confidence 47888999999999999987542 111111 1111112223466667777755 4577888754
No 341
>KOG0266|consensus
Probab=67.62 E-value=1.1e+02 Score=35.78 Aligned_cols=94 Identities=14% Similarity=0.215 Sum_probs=57.3
Q ss_pred cEEEEEECCCC--cEEEcCCCCccccceeeE-EECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEE
Q psy9769 334 RSVECYDFKTE--RWQSVAEMPTRRCRAGLV-FLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLI 410 (1026)
Q Consensus 334 ~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 410 (1026)
..+.+||...+ .-..+..++... ++++ .-.+.+++.|+.++++.+||..+.+-...-......-...+..-++..
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence 46778888433 223444444444 3333 334689999999999999999986543322222222222233346778
Q ss_pred EEEeccCCCCCCCEEEEEECCCCc
Q psy9769 411 YAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 411 yv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
++.+.++ ..+..||..++.
T Consensus 303 l~s~s~d-----~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 303 LVSASYD-----GTIRVWDLETGS 321 (456)
T ss_pred EEEcCCC-----ccEEEEECCCCc
Confidence 8877654 468899988776
No 342
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=67.57 E-value=1.2e+02 Score=33.89 Aligned_cols=137 Identities=14% Similarity=0.013 Sum_probs=75.5
Q ss_pred cEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE-CCEEEEEec---------cCCCeEEEeCCCCeEE
Q psy9769 320 KVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL-HEKVYAVGG---------FNGSLRVYDPSTNEWS 389 (1026)
Q Consensus 320 ~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG---------~~~~~~~yd~~~~~W~ 389 (1026)
..+||.-.......+++..+|..+. +.+...|.+...+....- +..+|+.-. .++.+.+||+.|.+=.
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~--~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~ 90 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAG--RVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI 90 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCC--EEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence 4678876543333478999998774 444444443333333333 468999987 4567899999987643
Q ss_pred -eCCCCcCCcce------eEEEEECC-EEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEe
Q psy9769 390 -SAPPMEARRST------LGVAVLNS-LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAEN 461 (1026)
Q Consensus 390 -~~~~~p~~r~~------~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~G 461 (1026)
+++-.+.||.. ..+..-+| .+||.- . ...+.+-++|..+++-.. ..+.|-+.+..+.-++..++..
T Consensus 91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n-~---~p~~~V~VvD~~~~kvv~--ei~vp~~~~vy~t~e~~~~~~~ 164 (352)
T TIGR02658 91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQ-F---SPSPAVGVVDLEGKAFVR--MMDVPDCYHIFPTANDTFFMHC 164 (352)
T ss_pred eEEccCCCchhhccCccceEEECCCCCEEEEec-C---CCCCEEEEEECCCCcEEE--EEeCCCCcEEEEecCCccEEEe
Confidence 23322344421 12222355 577751 1 224789999988766543 3333444444444444444443
Q ss_pred CCC
Q psy9769 462 LDG 464 (1026)
Q Consensus 462 G~~ 464 (1026)
+.+
T Consensus 165 ~Dg 167 (352)
T TIGR02658 165 RDG 167 (352)
T ss_pred ecC
Confidence 333
No 343
>KOG0291|consensus
Probab=67.44 E-value=1.7e+02 Score=35.30 Aligned_cols=155 Identities=12% Similarity=0.114 Sum_probs=86.9
Q ss_pred cCCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE--CCEEEEEeccCCCeEEEeCCCCeEEeCCCC
Q psy9769 317 RVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRVYDPSTNEWSSAPPM 394 (1026)
Q Consensus 317 ~~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~ 394 (1026)
..++.+++.|+.++ .+-.||..+.-... ....+-++++++.+ .|+..+..-.+|++..||.....=-+.-..
T Consensus 359 SpDgq~iaTG~eDg----KVKvWn~~SgfC~v--TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 359 SPDGQLIATGAEDG----KVKVWNTQSGFCFV--TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred CCCCcEEEeccCCC----cEEEEeccCceEEE--EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 34667888888664 46666766543221 12222333333322 466666667889999999876542222233
Q ss_pred cCCcceeEEEEEC--CEEEEEeccCCCCCCCEEEEEECCCCcEEEc-cCCCCCcceeEEEEECCEEEEEeCCCceeeEEc
Q psy9769 395 EARRSTLGVAVLN--SLIYAVGGFDGSSGLNSAEVYDPSTEKWNMI-APMSTRRSSVGVGVLNGCLYAENLDGRILGCVK 471 (1026)
Q Consensus 395 p~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~ 471 (1026)
|.|+ .+++++.+ |.|.++|+.+. -.+.+++.+|++--.+ ..-..|.++.+.-. .+.+.+-|-.++..+.++
T Consensus 433 P~p~-QfscvavD~sGelV~AG~~d~----F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 433 PEPI-QFSCVAVDPSGELVCAGAQDS----FEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCce-eeeEEEEcCCCCEEEeeccce----EEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEE
Confidence 4444 45566665 88988888653 4677888888775433 22223333333333 344555666666555555
Q ss_pred CcccEEEeecCC
Q psy9769 472 EITDWGLIIELP 483 (1026)
Q Consensus 472 ~~~~W~~~~~lP 483 (1026)
--.+|..+.+++
T Consensus 507 if~s~~~vEtl~ 518 (893)
T KOG0291|consen 507 IFSSSGTVETLE 518 (893)
T ss_pred eeccCceeeeEe
Confidence 555555555544
No 344
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=67.27 E-value=1.2e+02 Score=33.17 Aligned_cols=147 Identities=16% Similarity=0.179 Sum_probs=66.7
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcC-CCCccccceeeEEE-CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVA-EMPTRRCRAGLVFL-HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEA 396 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~ 396 (1026)
++..|++|.. .-+..-.-.-.+|+.++ +.+.|-..+.+..+ ++.++++| ..+.+++=.-.-.+|+.+..-..
T Consensus 71 ~~~g~ivG~~-----g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~ 144 (302)
T PF14870_consen 71 GNEGWIVGEP-----GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSETS 144 (302)
T ss_dssp TTEEEEEEET-----TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S--
T ss_pred CCceEEEcCC-----ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccCCc
Confidence 4566777642 12333344567899975 22333343444444 45777765 44566665556678988653222
Q ss_pred CcceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCCceeeEEc---C
Q psy9769 397 RRSTLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVK---E 472 (1026)
Q Consensus 397 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~---~ 472 (1026)
..-..+... +|++++++ ..+ +-....|+....|....-....|-......-++.|+++. .+....+.+ .
T Consensus 145 -gs~~~~~r~~dG~~vavs-~~G----~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 145 -GSINDITRSSDGRYVAVS-SRG----NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp ---EEEEEE-TTS-EEEEE-TTS----SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred -ceeEeEEECCCCcEEEEE-Ccc----cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 222223333 56655554 333 334467888888997765434444433334477888876 333444443 3
Q ss_pred cccEEE
Q psy9769 473 ITDWGL 478 (1026)
Q Consensus 473 ~~~W~~ 478 (1026)
..+|..
T Consensus 218 ~~~w~~ 223 (302)
T PF14870_consen 218 GETWSE 223 (302)
T ss_dssp EEEE--
T ss_pred cccccc
Confidence 366766
No 345
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=67.00 E-value=21 Score=27.81 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=36.6
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGEL 1012 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~ 1012 (1026)
|+.+.=.|-.+++.|--.=-.+.+.|+.-.. +.-.+ -...+.+||.+++.||.||--+.
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~A--tryH~--~g~nl~pGqK~kaviLhvD~l~~ 59 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLA--SRYHK--EGVNVTPGCKLKAVILHVDFVKS 59 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEE--EEEEe--cceecCCCceeEEEEEEEeeEEe
Confidence 5666667777777764333356788873221 11111 12346799999999999996443
No 346
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.96 E-value=1.8e+02 Score=36.46 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=66.2
Q ss_pred CCccCCcEEEEEcCCCCCCCcEEEEEECCCC--cEEEcCCCCccc------c----ce-------------eeEEECCEE
Q psy9769 314 QPLRVPKVMLVVGGQAPKAIRSVECYDFKTE--RWQSVAEMPTRR------C----RA-------------GLVFLHEKV 368 (1026)
Q Consensus 314 ~~~~~~~~i~v~GG~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r------~----~~-------------~~~~~~~~i 368 (1026)
.++.+++.+|+... .+.++++|..+. .|+.-+..+..- + ++ +.+..+++|
T Consensus 189 TPlvvgg~lYv~t~-----~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV 263 (764)
T TIGR03074 189 TPLKVGDTLYLCTP-----HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRI 263 (764)
T ss_pred CCEEECCEEEEECC-----CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEE
Confidence 34556888888754 356888888765 477644333110 0 00 012334567
Q ss_pred EEEeccCCCeEEEeCCCCe--EEe-----------CCCCcCCc--ceeEEEEECCEEEEEeccCCC-----CCCCEEEEE
Q psy9769 369 YAVGGFNGSLRVYDPSTNE--WSS-----------APPMEARR--STLGVAVLNSLIYAVGGFDGS-----SGLNSAEVY 428 (1026)
Q Consensus 369 yv~GG~~~~~~~yd~~~~~--W~~-----------~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~-----~~~~~v~~y 428 (1026)
|+ |..++.++.+|..|.+ |.. +++.+... ...+-++.++.||+ |+.... .....+..|
T Consensus 264 ~~-~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 264 IL-PTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EE-ecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCCCcEEEEE
Confidence 65 5567778888887765 542 11222221 12234566888776 543211 124678999
Q ss_pred ECCCCc--EEEc
Q psy9769 429 DPSTEK--WNMI 438 (1026)
Q Consensus 429 d~~~~~--W~~~ 438 (1026)
|..|++ |+.-
T Consensus 342 Da~TGkl~W~~~ 353 (764)
T TIGR03074 342 DVNTGALVWAWD 353 (764)
T ss_pred ECCCCcEeeEEe
Confidence 999886 7654
No 347
>PRK04792 tolB translocation protein TolB; Provisional
Probab=65.27 E-value=2.7e+02 Score=32.46 Aligned_cols=141 Identities=13% Similarity=-0.041 Sum_probs=68.8
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEec--cCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGG--FNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS- 408 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~- 408 (1026)
...++..|.....-+.+...+.+-... ...-+| +|+...- ....++++|+.+++-+.+...+..-.. ....-+|
T Consensus 197 ~~~l~i~d~dG~~~~~l~~~~~~~~~p-~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~ 274 (448)
T PRK04792 197 PYQLMIADYDGYNEQMLLRSPEPLMSP-AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGK 274 (448)
T ss_pred ceEEEEEeCCCCCceEeecCCCcccCc-eECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCC-eeECCCCC
Confidence 456777777665545443322211111 112233 3333211 123688899988877666654422111 1222244
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECC-EEEEEe---CCCceeeEEcCcccEEEe
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNG-CLYAEN---LDGRILGCVKEITDWGLI 479 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~G---G~~~~~~~~~~~~~W~~~ 479 (1026)
+|++....++ ...++.+|+.+++++.+..-......+ ...-++ .|++.. |...++.++..+.++..+
T Consensus 275 ~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L 345 (448)
T PRK04792 275 KLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEP-SWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL 345 (448)
T ss_pred EEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence 4665543332 267999999999988776432111111 112233 454443 233444455555555544
No 348
>PTZ00421 coronin; Provisional
Probab=65.01 E-value=1.5e+02 Score=35.15 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=39.9
Q ss_pred CEEEEEeccCCCeEEEeCCCCeEE-eCCCCcCCcceeEEE-EECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 366 EKVYAVGGFNGSLRVYDPSTNEWS-SAPPMEARRSTLGVA-VLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 366 ~~iyv~GG~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
+.+++.||.++.+.+||..+.+-. .+..... .-.+++ ..++.+++.|+.+ ..+..||+.+++
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~--~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~ 201 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHSD--QITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGT 201 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC--ceEEEEEECCCCEEEEecCC-----CEEEEEECCCCc
Confidence 468888999999999999876532 1211111 111222 2367788888765 468899998765
No 349
>KOG0316|consensus
Probab=64.43 E-value=59 Score=33.40 Aligned_cols=95 Identities=17% Similarity=0.320 Sum_probs=66.9
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEEC--CEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEE
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLH--EKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIY 411 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 411 (1026)
+.+..||..+.+-..- ....-..--++.+| ..+.+-|+++.++.+||-.++.-+++.-+...+-+...+.+.+...
T Consensus 81 k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heI 158 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEI 158 (307)
T ss_pred ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEE
Confidence 4688899888753221 11111112234444 3788889999999999999999888888888888888888888887
Q ss_pred EEeccCCCCCCCEEEEEECCCCcE
Q psy9769 412 AVGGFDGSSGLNSAEVYDPSTEKW 435 (1026)
Q Consensus 412 v~GG~~~~~~~~~v~~yd~~~~~W 435 (1026)
+.|-.++ .+-.||+..++-
T Consensus 159 vaGS~DG-----tvRtydiR~G~l 177 (307)
T KOG0316|consen 159 VAGSVDG-----TVRTYDIRKGTL 177 (307)
T ss_pred EeeccCC-----cEEEEEeeccee
Confidence 7776654 466898876554
No 350
>PRK04922 tolB translocation protein TolB; Provisional
Probab=64.11 E-value=2.6e+02 Score=32.39 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=57.6
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeE-EEEEC-C
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLG-VAVLN-S 408 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~-~~~~~-~ 408 (1026)
.+++.+|+.+...+++..-+..-... ...-+| .|+......+ +++.+|..+++++.+..- ...... ...-+ .
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~ 348 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGK 348 (433)
T ss_pred ceEEEEECCCCCeEECccCCCCccce-EECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecC--CCCccCEEECCCCC
Confidence 57999999988877765432211111 122234 4555443333 588889888888776521 122222 22224 4
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccC
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP 440 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 440 (1026)
.|++..+.++ ...++.+|+.++.+..+..
T Consensus 349 ~Ia~~~~~~~---~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 349 KIAMVHGSGG---QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred EEEEEECCCC---ceeEEEEECCCCCeEECCC
Confidence 5655544221 2478999999988887764
No 351
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=63.94 E-value=2e+02 Score=30.49 Aligned_cols=128 Identities=18% Similarity=0.299 Sum_probs=76.8
Q ss_pred CCCcEEEEEECCCCcEEEcCCCCcccc------------ceeeEEECCEEEEEecc---CCC--eEEEeCCC----CeEE
Q psy9769 331 KAIRSVECYDFKTERWQSVAEMPTRRC------------RAGLVFLHEKVYAVGGF---NGS--LRVYDPST----NEWS 389 (1026)
Q Consensus 331 ~~~~~~~~yd~~~~~W~~~~~~p~~r~------------~~~~~~~~~~iyv~GG~---~~~--~~~yd~~~----~~W~ 389 (1026)
...+.+.+||..+++-..-..+|.+.. ..-.++-.+-|+|+=.. .+. +-..||.+ .+|.
T Consensus 86 ~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~ 165 (250)
T PF02191_consen 86 YNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWN 165 (250)
T ss_pred cCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEE
Confidence 456889999999887552222333222 13345556677777433 222 33467654 4686
Q ss_pred eCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEcc-CCCCCcceeEEEEE---CCEEEEEeC
Q psy9769 390 SAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIA-PMSTRRSSVGVGVL---NGCLYAENL 462 (1026)
Q Consensus 390 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~lyv~GG 462 (1026)
. ..+.+..+ .+.++-|.||++...+... ..-.+.||+.+++=..+. +++.+-..+++..+ +.+||+.--
T Consensus 166 T--~~~k~~~~-naFmvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 166 T--SYPKRSAG-NAFMVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred e--ccCchhhc-ceeeEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEEC
Confidence 4 34443333 3556678999997765433 456678999988766443 34445556666666 578999853
No 352
>KOG0289|consensus
Probab=63.62 E-value=96 Score=34.78 Aligned_cols=122 Identities=13% Similarity=0.235 Sum_probs=69.5
Q ss_pred ccceeeEEE-CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCC
Q psy9769 356 RCRAGLVFL-HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTE 433 (1026)
Q Consensus 356 r~~~~~~~~-~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 433 (1026)
...++++.+ +|.|+..|-.++.+.+||..+.. .++.+|.--+--.+..+ ++-.|+.-+.++ .+|-+||++..
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl 421 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKL 421 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhh
Confidence 345566666 56777777778889999998876 56655542221222233 333344434332 34889998755
Q ss_pred cEEEccCCCCCcc-eeEEEEE--CCEEEEEeCCC-ceeeEEcCcccEEEeecCCCc
Q psy9769 434 KWNMIAPMSTRRS-SVGVGVL--NGCLYAENLDG-RILGCVKEITDWGLIIELPNF 485 (1026)
Q Consensus 434 ~W~~~~~~p~~r~-~~~~~~~--~~~lyv~GG~~-~~~~~~~~~~~W~~~~~lP~~ 485 (1026)
. .....+.+-. ......+ .|...+++|.. .++-|...+..|+.+..++..
T Consensus 422 ~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~ 475 (506)
T KOG0289|consen 422 K--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH 475 (506)
T ss_pred c--ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc
Confidence 4 2222222211 2223333 35566666543 445566678899999888763
No 353
>KOG0278|consensus
Probab=63.43 E-value=1.8e+02 Score=30.28 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEE
Q psy9769 332 AIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIY 411 (1026)
Q Consensus 332 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 411 (1026)
...++..+|..+++=.+--..+.+.... -+..+|.|..+. +.+++..+|+.+-.--+--.||..-.+++.- -+..+|
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~-P~k~~f 239 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLH-PKKEFF 239 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEe-cCceeEEeccccccceeeccCcccccccccc-CCCceE
Confidence 3456788888877644322233333322 223355555542 3446777887664433333566554332221 244799
Q ss_pred EEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcce--eEEE-EECCEEEEEeCCCceeeE
Q psy9769 412 AVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSS--VGVG-VLNGCLYAENLDGRILGC 469 (1026)
Q Consensus 412 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~~~-~~~~~lyv~GG~~~~~~~ 469 (1026)
|+||.+ -.++.||-.|+.= +........+ |++- .-+|.+|..|-.++..+.
T Consensus 240 VaGged-----~~~~kfDy~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirl 293 (334)
T KOG0278|consen 240 VAGGED-----FKVYKFDYNTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRL 293 (334)
T ss_pred EecCcc-----eEEEEEeccCCce--eeecccCCCCceEEEEECCCCceeeccCCCceEEE
Confidence 999965 3567788766542 2222222222 2221 128999999976554443
No 354
>PRK03629 tolB translocation protein TolB; Provisional
Probab=63.13 E-value=2.6e+02 Score=32.43 Aligned_cols=102 Identities=12% Similarity=-0.001 Sum_probs=57.0
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEE
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLI 410 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 410 (1026)
..++.+|..+++-+.+...+..-... ...-+| .|++.....+ +++.+|..+.+.+.+...+..-. .....-+|+-
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~~-~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSPDG~~ 300 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGAP-AFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPDSQN 300 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCCe-EECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC-ceEECCCCCE
Confidence 57889999888777766554322221 222244 5665533333 58899999888877654332111 1112225543
Q ss_pred EEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 411 YAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 411 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
+++....+ ....++.+|+.++....+.
T Consensus 301 I~f~s~~~--g~~~Iy~~d~~~g~~~~lt 327 (429)
T PRK03629 301 LAYTSDQA--GRPQVYKVNINGGAPQRIT 327 (429)
T ss_pred EEEEeCCC--CCceEEEEECCCCCeEEee
Confidence 33332211 1357889999887776664
No 355
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=62.86 E-value=2.2e+02 Score=37.39 Aligned_cols=103 Identities=19% Similarity=0.274 Sum_probs=59.5
Q ss_pred CEEEEEeccCCCeEEEeCCCCeEEeCC--C--CcC--------------Cc--ceeEEEE-ECCEEEEEeccCCCCCCCE
Q psy9769 366 EKVYAVGGFNGSLRVYDPSTNEWSSAP--P--MEA--------------RR--STLGVAV-LNSLIYAVGGFDGSSGLNS 424 (1026)
Q Consensus 366 ~~iyv~GG~~~~~~~yd~~~~~W~~~~--~--~p~--------------~r--~~~~~~~-~~~~iyv~GG~~~~~~~~~ 424 (1026)
+.|||....++.+.+||+.++....+. . .+. .+ .-.+++. -+|.|||....+ ..
T Consensus 752 ~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N-----~r 826 (1057)
T PLN02919 752 KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN-----HK 826 (1057)
T ss_pred CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC-----CE
Confidence 469999888899999999876532111 0 000 00 0112232 367899986543 67
Q ss_pred EEEEECCCCcEEEccCCCC-----------Ccce-eEEEE-ECCEEEEEeCCC-ceeeEEcCc
Q psy9769 425 AEVYDPSTEKWNMIAPMST-----------RRSS-VGVGV-LNGCLYAENLDG-RILGCVKEI 473 (1026)
Q Consensus 425 v~~yd~~~~~W~~~~~~p~-----------~r~~-~~~~~-~~~~lyv~GG~~-~~~~~~~~~ 473 (1026)
|.+||+.++....++.... .... +++++ -++++||....+ .+..++..+
T Consensus 827 IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 827 IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 9999999888876653211 0111 23333 267899987544 444444433
No 356
>KOG2321|consensus
Probab=62.56 E-value=52 Score=38.11 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=59.0
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEE-------eCCC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWS-------SAPP 393 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~-------~~~~ 393 (1026)
.||+.|- -.++|++|...++|-.--....+--+++...--+.+.++||.++.++.||+.+..-. .++.
T Consensus 147 Dly~~gs-----g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 147 DLYLVGS-----GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred cEEEeec-----CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCC
Confidence 4666552 358999999999985311111121222222223578899999999999999876521 1222
Q ss_pred CcCCcc--eeEEEEECC-EEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 394 MEARRS--TLGVAVLNS-LIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 394 ~p~~r~--~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
.|..-. ..++..+.+ -|-+.-|.. ...++.||+.+.+
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASK 261 (703)
T ss_pred CccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCC
Confidence 222211 233444433 565554543 2467788876543
No 357
>COG4044 Uncharacterized protein conserved in archaea [Function unknown]
Probab=61.92 E-value=18 Score=35.98 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=50.5
Q ss_pred CCccccCCCCcEEEEEEEEEec--ceEEEEeCC----CceeeEeccccCcccccCc------ccccccCCEEEEEEEEEe
Q psy9769 941 LTSVKHTKPGRLVWGVLKEKMP--GGVRVEFDG----DISGVFPTSAMSQATRTLV------YTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 941 ~~~~~~~~~G~~v~G~V~~i~~--~G~fV~~~~----~i~Gl~~~~~ls~~~~~~~------~~~~~~G~~V~~~Vl~vd 1008 (1026)
+.+..++.+|+++.|++....+ ||++|.++= -.++|+|.-+|.....+.| +-.+-.-..|++-|.++|
T Consensus 67 i~sl~~~~~Gdv~vGrl~~l~~vgyg~yvdigV~~p~~~dalvply~Lk~~~gekpvrqi~r~FG~V~~lPveV~V~evn 146 (247)
T COG4044 67 IPSLSKVEEGDVYVGRLIDLGKVGYGAYVDIGVLGPRPKDALVPLYELKRTFGEKPVRQIIRRFGWVDHLPVEVEVNEVN 146 (247)
T ss_pred CCccccCCCCcEEEEEEeeeccceeEEEccccccCCCcccccccHHHHHhccCCCcHHHHHHHcCCcccCceEEEEEecc
Confidence 5578888999999999998865 456665531 2568899888866555555 223456778999999998
Q ss_pred C
Q psy9769 1009 D 1009 (1026)
Q Consensus 1009 ~ 1009 (1026)
+
T Consensus 147 k 147 (247)
T COG4044 147 K 147 (247)
T ss_pred c
Confidence 8
No 358
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=61.74 E-value=8 Score=34.10 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCchhHHhHHHHhhhcc
Q psy9769 136 QMLLPAANLLQLTDVRDACCDFLQCQ 161 (1026)
Q Consensus 136 ~~ll~~A~~l~l~~L~~~c~~~l~~~ 161 (1026)
.+++.+|+.|+++.|.+.|..|+..+
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 56788899999999999999998876
No 359
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=61.27 E-value=1e+02 Score=31.24 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCCCcEEEEEECCCCcEE---EcC--CCCc--cccceeeEEE-CCEEEEEeccCCCeEEEeCCCCeEEeC
Q psy9769 320 KVMLVVGGQAPKAIRSVECYDFKTERWQ---SVA--EMPT--RRCRAGLVFL-HEKVYAVGGFNGSLRVYDPSTNEWSSA 391 (1026)
Q Consensus 320 ~~i~v~GG~~~~~~~~~~~yd~~~~~W~---~~~--~~p~--~r~~~~~~~~-~~~iyv~GG~~~~~~~yd~~~~~W~~~ 391 (1026)
+.+|++-| +..|+||..+..+. .+. ..|. ..-..+...- ++++|+|.| +..++||..+++....
T Consensus 63 ~~~yfFkg------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--~~y~ry~~~~~~v~~~ 134 (194)
T cd00094 63 GKIYFFKG------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--DKYWRYDEKTQKMDPG 134 (194)
T ss_pred CEEEEECC------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--CEEEEEeCCCccccCC
Confidence 67888866 36778876542221 111 1111 1112222222 589999977 3577888766553211
Q ss_pred ---------CCCcCCcceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 392 ---------PPMEARRSTLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 392 ---------~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
+.+|.. --++... ++++|++-| +..++||..+.+
T Consensus 135 yP~~i~~~w~g~p~~--idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 135 YPKLIETDFPGVPDK--VDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CCcchhhcCCCcCCC--cceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 122221 1233334 489999988 689999988765
No 360
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=60.20 E-value=50 Score=30.88 Aligned_cols=75 Identities=16% Similarity=0.256 Sum_probs=51.1
Q ss_pred cCCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCC---CCccccceeeEEECCEEEEEeccCC------CeEEE-eCCCC
Q psy9769 317 RVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAE---MPTRRCRAGLVFLHEKVYAVGGFNG------SLRVY-DPSTN 386 (1026)
Q Consensus 317 ~~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~------~~~~y-d~~~~ 386 (1026)
++++.+|-.+-........+.+||..+.+|+.++. ..........+.++|+|-++.-... ++|+. |..++
T Consensus 3 cinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~k~ 82 (129)
T PF08268_consen 3 CINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYEKQ 82 (129)
T ss_pred EECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccccc
Confidence 35666666655433445678999999999997754 2344567788899999988764332 34554 56678
Q ss_pred eEEeC
Q psy9769 387 EWSSA 391 (1026)
Q Consensus 387 ~W~~~ 391 (1026)
+|.+.
T Consensus 83 ~Wsk~ 87 (129)
T PF08268_consen 83 EWSKK 87 (129)
T ss_pred eEEEE
Confidence 89864
No 361
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=59.42 E-value=1.5e+02 Score=31.38 Aligned_cols=130 Identities=15% Similarity=0.113 Sum_probs=75.1
Q ss_pred eEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcc---eeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEE
Q psy9769 361 LVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRS---TLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNM 437 (1026)
Q Consensus 361 ~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 437 (1026)
++.-+|.+|..-=..+-+-..|+.+..=+.++. |.+.. .-..+---+++++. ......+++|||.+.+|..
T Consensus 195 ~atpdGsvwyaslagnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wit-----twg~g~l~rfdPs~~sW~e 268 (353)
T COG4257 195 CATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWIT-----TWGTGSLHRFDPSVTSWIE 268 (353)
T ss_pred EECCCCcEEEEeccccceEEcccccCCcceecC-CCcccccccccccCccCcEEEe-----ccCCceeeEeCccccccee
Confidence 344578888775444556667877765444432 22211 11112224667765 1223689999999999986
Q ss_pred cc-CCCCCcceeEEEEECCEEEEE-eCCCceeeEEcCcccEEEeecCCCcccceEEEeeecc
Q psy9769 438 IA-PMSTRRSSVGVGVLNGCLYAE-NLDGRILGCVKEITDWGLIIELPNFLSASVHITEISD 497 (1026)
Q Consensus 438 ~~-~~p~~r~~~~~~~~~~~lyv~-GG~~~~~~~~~~~~~W~~~~~lP~~~~g~~~~~~~~d 497 (1026)
-+ +-..+|....-+--.++++.. -+.+.+.+||+.+.+.+.. +.|++..+...+....+
T Consensus 269 ypLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~-p~pr~n~gn~ql~gr~g 329 (353)
T COG4257 269 YPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL-PIPRPNSGNIQLDGRPG 329 (353)
T ss_pred eeCCCCCCCcceeeeccCCcEEeeccccCceeecCcccceEEEe-cCCCCCCCceeccCCCC
Confidence 54 222444443334445677774 3556677888887776655 55666666555555444
No 362
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=57.80 E-value=1.1e+02 Score=30.50 Aligned_cols=117 Identities=18% Similarity=0.185 Sum_probs=61.5
Q ss_pred ceeeeeEeEEEEeeeEEEeccceeeeecccceeeCCccccccCcEEeecCeEEEehhh-hhcccCCCCccccCCCC----
Q psy9769 876 DEVSCVVKGISVRGVIAQVGYYKLKATCENEYVEGNKADIKVGDEVQAKNSIEVAFKS-LYRIAQPLTSVKHTKPG---- 950 (1026)
Q Consensus 876 ~~~~g~v~~i~~~g~~v~l~~~~~~~~~~~~~~~~~~~~~kvG~~v~~~~~i~ls~K~-l~~~~~~~~~~~~~~~G---- 950 (1026)
+.++|+|..+..--++++-..++-. ..........+||||.|++...+.-.+-. +. +..++.+ .+.||
T Consensus 40 ~tiEGrVvEV~~~~i~iesk~yn~~----v~i~~d~~~nvKVGD~VKaTG~m~rnf~~ym~--A~sVEk~-~~~~G~h~~ 112 (213)
T PRK06763 40 STIEGRVVEVDNGVIVIKSKQYEEP----VSVYIDSLSNVKVGDEVKATGSMMRNFTEYMV--ATAVENT-TNKLGMHMK 112 (213)
T ss_pred ceeeeEEEEEeCCEEEEEeccCCCc----eEEEecCCCCcccCcEEEEchHHHHhhHHhhh--hhhheee-ccCcceeec
Confidence 4567888888776666665542221 22222333456999999974322111111 11 0111111 12333
Q ss_pred -----cEEEEEEEEEecc---------eEEEEeCC--CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 951 -----RLVWGVLKEKMPG---------GVRVEFDG--DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 951 -----~~v~G~V~~i~~~---------G~fV~~~~--~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
+-+.|.|+++-.+ -+.|+.++ |=...|+. +.+ -...|++||.||+.-..
T Consensus 113 e~g~pdYvIG~Iskv~k~~~~~~~~~dyVvV~YP~~~G~~~~V~V------~LT-~GQkFnVGDkVKV~~~~ 177 (213)
T PRK06763 113 EDGSPDYVIGEVSKVYTMEDDGDGATKYVVVEYPSLNGKKLIIDV------FLT-KGQVFHVGDKVKVDMKY 177 (213)
T ss_pred ccCCcceEEEEEEEecccccCCCCcccEEEEEcCCCCCCeeEEEE------Eec-cCCEEecCCEEEEEeee
Confidence 4578999998442 37788754 22222221 111 23679999999987443
No 363
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=57.19 E-value=1.5e+02 Score=31.53 Aligned_cols=100 Identities=16% Similarity=0.276 Sum_probs=57.8
Q ss_pred cEEEEEECCCCcEEEcCCCCcc-ccceeeEE--ECCEEEEEeccCCCeEEEeCCCCeEEeCC-CCcCCcceeEEEEECCE
Q psy9769 334 RSVECYDFKTERWQSVAEMPTR-RCRAGLVF--LHEKVYAVGGFNGSLRVYDPSTNEWSSAP-PMEARRSTLGVAVLNSL 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~ 409 (1026)
+.+-..||.+..=+.++ .|.+ .....-+. --+++++.---++++++|||.+..|.+-+ |-..+|.+..-+--.|+
T Consensus 210 naiaridp~~~~aev~p-~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 210 NAIARIDPFAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred cceEEcccccCCcceec-CCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 34556677666433333 2333 11211122 23677776434568899999999998754 22244544333333566
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
++.- ....+.+.+|||++.+.+.++
T Consensus 289 VW~s-----ea~agai~rfdpeta~ftv~p 313 (353)
T COG4257 289 VWLS-----EADAGAIGRFDPETARFTVLP 313 (353)
T ss_pred EEee-----ccccCceeecCcccceEEEec
Confidence 7763 122478899999998888764
No 364
>KOG2723|consensus
Probab=55.78 E-value=28 Score=35.70 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=60.7
Q ss_pred Ccc-EEEEECCEEEEEEhh-hhhccChhhHhhhcC-C--ccCcccEEEecCCCHHHHHHHhhheecceeeech--hhHHH
Q psy9769 65 LCD-VKLIADGVEVAAHKM-VLAACSPYFHAMFIS-F--EESKQERIVLKGVDPNALKLLIDYVYSCEIYVTE--ENVQM 137 (1026)
Q Consensus 65 ~~D-v~i~v~~~~~~~Hr~-vL~~~S~yF~~mf~~-~--~e~~~~~i~l~~~~~~~f~~~l~~~Ytg~~~i~~--~~v~~ 137 (1026)
+.| +.+.++|+.|..-.. +.+-.-....+||++ . .........| +=+-..|+-+|+|+-+....++. .++..
T Consensus 7 ~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 7 YPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred cCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 344 555678877765444 333334455567762 1 1122223444 34567899999999996655554 68899
Q ss_pred HHHHHHhcCchhHHhHHHHhhh
Q psy9769 138 LLPAANLLQLTDVRDACCDFLQ 159 (1026)
Q Consensus 138 ll~~A~~l~l~~L~~~c~~~l~ 159 (1026)
|..-|++|+++.+...+.+-..
T Consensus 86 L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 86 LVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred HHHHHHHHccccHHHHHhcccc
Confidence 9999999999988876665443
No 365
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=55.64 E-value=12 Score=46.45 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=58.0
Q ss_pred ccCCceEEeeeecccCCcceeeccccceeeccCcccccchh---------------hhhhcccccccccceeeeeccccc
Q psy9769 645 LVPGMKVIANICQQLPHGWKAKLKNTQFKAFISPEAMSTAY---------------NAKYLTNKRVDLDCSVLYVCPRHF 709 (1026)
Q Consensus 645 l~~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi~~~~~~~~~---------------~~~~~~G~~~~~~~~Il~vd~~~~ 709 (1026)
-..|...+|.|+++..+|++|.+-..++.|+++.+.++..+ ...|..|+++ ++++..+|+..+
T Consensus 620 ~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v--~v~v~~v~~~~~ 697 (706)
T COG0557 620 KRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEV--KVKVTSVDLDER 697 (706)
T ss_pred HhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEE--EEEEEEEccccc
Confidence 36899999999999999999999555689998777777422 3369999999 999999999988
Q ss_pred eEEeech
Q psy9769 710 HVYLSCN 716 (1026)
Q Consensus 710 ~v~lS~k 716 (1026)
++.+++-
T Consensus 698 ~i~~~~v 704 (706)
T COG0557 698 KIDFELV 704 (706)
T ss_pred ceEEEec
Confidence 8877653
No 366
>KOG4649|consensus
Probab=54.66 E-value=2.4e+02 Score=29.67 Aligned_cols=116 Identities=18% Similarity=0.244 Sum_probs=67.1
Q ss_pred CcEEEEEECCCCc--EEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCC--eEEeCCCCcCCcceeEEEEECC
Q psy9769 333 IRSVECYDFKTER--WQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTN--EWSSAPPMEARRSTLGVAVLNS 408 (1026)
Q Consensus 333 ~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~ 408 (1026)
...+.+-|+.+.. |+++ -..|...++.++++. .|+|-+++.++..+..|+ -|....- ..-...+.+ ..++
T Consensus 32 s~~~~avd~~sG~~~We~i---lg~RiE~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~-d~~~ 105 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAI---LGVRIECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQC-DFDG 105 (354)
T ss_pred CceEEEecCCCCcEEeehh---hCceeeeeeEEECCE-EEEEEccCcEEEEEecchhheeeeeeh-hhhccceEE-cCCC
Confidence 4467778888764 7764 245777777778888 578989999999888776 4765431 111222222 3344
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCc--EEEccCCCCCc-ceeEEEEECCEEEEEe
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIAPMSTRR-SSVGVGVLNGCLYAEN 461 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r-~~~~~~~~~~~lyv~G 461 (1026)
.+..+|-.++ ..+..|+.+.. |+ ...+-.- .+++.+..++.||+.-
T Consensus 106 glIycgshd~-----~~yalD~~~~~cVyk--skcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 106 GLIYCGSHDG-----NFYALDPKTYGCVYK--SKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred ceEEEecCCC-----cEEEecccccceEEe--cccCCceeccceecCCCceEEEEe
Confidence 4444555543 46677887655 54 2222111 1223333467777764
No 367
>PRK05137 tolB translocation protein TolB; Provisional
Probab=54.31 E-value=3.6e+02 Score=31.26 Aligned_cols=105 Identities=6% Similarity=-0.073 Sum_probs=55.3
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEec--cCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGG--FNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS- 408 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG--~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~- 408 (1026)
...++.+|.....=+.+..-..+-... ...-+| .|+...- ....++++|+.+++...+...+..-.. ....-+|
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p-~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~-~~~SPDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTP-RFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFA-PRFSPDGR 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEee-EECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccC-cEECCCCC
Confidence 457888887554333333211111111 112234 3433321 134789999999888777654432221 1222345
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccCCC
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 442 (1026)
+|++....++ ...++.+|+.++....+..-+
T Consensus 259 ~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~ 289 (435)
T PRK05137 259 KVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSP 289 (435)
T ss_pred EEEEEEecCC---CceEEEEECCCCceEEccCCC
Confidence 4544433222 367999999988887776533
No 368
>PRK10943 cold shock-like protein CspC; Provisional
Probab=54.11 E-value=49 Score=27.14 Aligned_cols=51 Identities=14% Similarity=-0.009 Sum_probs=36.0
Q ss_pred EEEEEEEEEec-ce-EEEEeC-CCceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 952 LVWGVLKEKMP-GG-VRVEFD-GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 952 ~v~G~V~~i~~-~G-~fV~~~-~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
.++|+|+.-.+ .| =||+-. ++-+=|+|.+.+..... ..+.+||.|.+.+..
T Consensus 3 ~~~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g~----~~l~~G~~V~f~~~~ 56 (69)
T PRK10943 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGF----KTLAEGQNVEFEIQD 56 (69)
T ss_pred ccceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccccCC----CCCCCCCEEEEEEEE
Confidence 56899997643 34 266654 46799999999954432 346799999997664
No 369
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=53.33 E-value=4e+02 Score=30.50 Aligned_cols=62 Identities=11% Similarity=0.030 Sum_probs=37.3
Q ss_pred CCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-EEEEEeccCCCCCCCEEEEEECCCCcEEEccCC
Q psy9769 376 GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS-LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPM 441 (1026)
Q Consensus 376 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 441 (1026)
..+++||..++....+...+..... ....-++ .|++....++ ...++.+|+.++..+.+...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~ 276 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNG 276 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCC
Confidence 4688899988876665544322222 1222344 4665543322 25799999998888777643
No 370
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=53.30 E-value=11 Score=40.73 Aligned_cols=54 Identities=22% Similarity=0.313 Sum_probs=48.6
Q ss_pred ccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecc-cccccCCHhhHhce
Q psy9769 161 QLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVEC-EEFLSLSHEQVLGL 214 (1026)
Q Consensus 161 ~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~-~~f~~L~~~~l~~l 214 (1026)
.++++|++.++.-++...+..|.+.|+.|+..|+.+++.+ -++..|+.+.+..|
T Consensus 71 ~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RL 125 (317)
T PF11822_consen 71 SLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASPCNLNCLNDNLLTRL 125 (317)
T ss_pred cCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCCCCcccCCHHHHHHH
Confidence 4899999999999999999999999999999999999885 46778888888777
No 371
>PRK02889 tolB translocation protein TolB; Provisional
Probab=51.66 E-value=4.4e+02 Score=30.51 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=53.8
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCE-
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSL- 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~- 409 (1026)
..++.+|..+.+=..+...+.... .....-+| +|++....++ +++.+|..+...+.+..-.. ........-+|+
T Consensus 220 ~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~ 297 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRS 297 (427)
T ss_pred cEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCE
Confidence 569999998876555554432111 11222244 5655444443 57778887776666543221 111112223554
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEcc
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIA 439 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 439 (1026)
|+...... ....++.+|..++..+.+.
T Consensus 298 l~f~s~~~---g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 298 IYFTSDRG---GAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred EEEEecCC---CCcEEEEEECCCCceEEEe
Confidence 54432211 1357888888877777664
No 372
>KOG0649|consensus
Probab=51.42 E-value=2.8e+02 Score=28.83 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=71.5
Q ss_pred CCcEEEcCCCCc-----cccceeeEE-ECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEE--CCEEEEEe
Q psy9769 343 TERWQSVAEMPT-----RRCRAGLVF-LHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL--NSLIYAVG 414 (1026)
Q Consensus 343 ~~~W~~~~~~p~-----~r~~~~~~~-~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G 414 (1026)
..-|+..+||.. |--+..... -.|.|+..|| ++.++..|.++++-+..-. -..-+-|+.+.- +++| +.|
T Consensus 98 K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-D~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG 174 (325)
T KOG0649|consen 98 KRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-DGVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSG 174 (325)
T ss_pred hhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-CeEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eec
Confidence 345777666543 222222222 3578887775 6678899999988765321 122344555542 4454 355
Q ss_pred ccCCCCCCCEEEEEECCCCcEEEc-c-----CCCCCccee--EEEEECCEEEEEeCCCceeeEEcCcccEEEeecCC
Q psy9769 415 GFDGSSGLNSAEVYDPSTEKWNMI-A-----PMSTRRSSV--GVGVLNGCLYAENLDGRILGCVKEITDWGLIIELP 483 (1026)
Q Consensus 415 G~~~~~~~~~v~~yd~~~~~W~~~-~-----~~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~W~~~~~lP 483 (1026)
|.+ ..+-.+|.+|.+-..+ . ++..|..+- ++...+....|.||+....-+.....+=+.+-+.|
T Consensus 175 ~ED-----GtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 175 AED-----GTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred CCC-----ccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecc
Confidence 555 3577888888876543 2 222333332 55555666777777655443333333333333333
No 373
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=51.03 E-value=62 Score=26.57 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=35.7
Q ss_pred cEEEEEEEEEec-ceE-EEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 951 RLVWGVLKEKMP-GGV-RVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 951 ~~v~G~V~~i~~-~G~-fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
+.++|+|+...+ .|. ||+-.+ +=+=|+|.+.+..... ..+.+||.|.+.+..
T Consensus 2 ~~~~G~Vk~f~~~kGyGFI~~~~g~~dvfvH~s~l~~~g~----~~l~~G~~V~f~~~~ 56 (69)
T PRK09507 2 SKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGF----KTLAEGQRVEFEITN 56 (69)
T ss_pred CccceEEEEEeCCCCcEEEecCCCCeeEEEEeecccccCC----CCCCCCCEEEEEEEE
Confidence 356799997643 332 566544 5689999999954322 346799999997654
No 374
>PRK15464 cold shock-like protein CspH; Provisional
Probab=50.80 E-value=57 Score=26.87 Aligned_cols=50 Identities=10% Similarity=-0.011 Sum_probs=36.4
Q ss_pred EEEEEEEEec-ceE-EEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 953 VWGVLKEKMP-GGV-RVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 953 v~G~V~~i~~-~G~-fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
.+|+|+...+ .|. ||+-++ +=+-|+|.+.|..... +.+.+||.|++.|..
T Consensus 5 ~~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~~g~----~~l~~G~~V~f~v~~ 57 (70)
T PRK15464 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVN 57 (70)
T ss_pred ceEEEEEEECCCCeEEEccCCCCccEEEEehhehhcCC----CCCCCCCEEEEEEEE
Confidence 4799997743 553 777655 5689999999955433 236799999998764
No 375
>KOG1332|consensus
Probab=50.06 E-value=1.3e+02 Score=31.16 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=57.0
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEc----------------CCCCccccceeeEEECCEEEEEeccCCCeEEEeCC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSV----------------AEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPS 384 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~----------------~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~ 384 (1026)
+=++.||.+. +-.+|.||- ++|..- |....+++..+.+.-++.++++ .-+.+
T Consensus 176 krlvSgGcDn--~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIw--------t~~~e 243 (299)
T KOG1332|consen 176 KRLVSGGCDN--LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIW--------TKDEE 243 (299)
T ss_pred ceeeccCCcc--ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEE--------EecCc
Confidence 5577888753 234455544 456421 2233456666666666766654 33455
Q ss_pred CCeEEe--CCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECC-CCcEEEccC
Q psy9769 385 TNEWSS--APPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPS-TEKWNMIAP 440 (1026)
Q Consensus 385 ~~~W~~--~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~-~~~W~~~~~ 440 (1026)
..+|+. +.+.|.+.+.. .-.+-|.+..++|-+ +.+.+|-+. .++|..++.
T Consensus 244 ~e~wk~tll~~f~~~~w~v-SWS~sGn~LaVs~Gd-----Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 244 YEPWKKTLLEEFPDVVWRV-SWSLSGNILAVSGGD-----NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCcccccccccCCcceEEE-EEeccccEEEEecCC-----cEEEEEEeCCCCcEEEccc
Confidence 678865 34566655543 344445555444422 567777654 459998764
No 376
>KOG0640|consensus
Probab=49.72 E-value=1.2e+02 Score=32.58 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=53.0
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEE--E--CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCccee--EEEE-
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVF--L--HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTL--GVAV- 405 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~--~~~~- 405 (1026)
...+..||..+-+.-.-+ .|.....-+++. + .++||+.|-.+|.+..||-.++..-. .+..+..+. +.+.
T Consensus 237 Hp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~--t~~~AH~gsevcSa~F 313 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR--TIGNAHGGSEVCSAVF 313 (430)
T ss_pred CCceeEEeccceeEeeec-CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHH--HHHhhcCCceeeeEEE
Confidence 346778998775433222 233222222222 2 47999999999999999988876532 222232222 2222
Q ss_pred -ECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 406 -LNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 406 -~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
-|++..+..|.+ +.+..|.+.+++
T Consensus 314 tkn~kyiLsSG~D-----S~vkLWEi~t~R 338 (430)
T KOG0640|consen 314 TKNGKYILSSGKD-----STVKLWEISTGR 338 (430)
T ss_pred ccCCeEEeecCCc-----ceeeeeeecCCc
Confidence 277766666765 344455554444
No 377
>KOG4350|consensus
Probab=49.57 E-value=13 Score=40.73 Aligned_cols=159 Identities=25% Similarity=0.333 Sum_probs=88.1
Q ss_pred cChhhHhhhcCCccCcccEEEecCCCHHHHHHHhhhe--ecc-ee----------eechhhHHHHHHHHHhcCchhHHhH
Q psy9769 87 CSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDYV--YSC-EI----------YVTEENVQMLLPAANLLQLTDVRDA 153 (1026)
Q Consensus 87 ~S~yF~~mf~~~~e~~~~~i~l~~~~~~~f~~~l~~~--Ytg-~~----------~i~~~~v~~ll~~A~~l~l~~L~~~ 153 (1026)
.|+-|++++.-+ ....+.+.+++.+++-.+|... |+- ++ -+..+|+..++.+|.+|++++|.+.
T Consensus 92 ~~eAF~~lLrYi---Ytg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~ 168 (620)
T KOG4350|consen 92 NSEAFRALLRYI---YTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDY 168 (620)
T ss_pred cHHHHHHHHHHH---hhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHH
Confidence 356677766511 1235667676666544433222 211 00 1456788899999999999999999
Q ss_pred HHHhhhcccCCcchhhHHHhhhhcCchhHHHHHHhhhhhhhhheecccccccCCHhhHhceeccccccccchhhHHHHHH
Q psy9769 154 CCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVI 233 (1026)
Q Consensus 154 c~~~l~~~l~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~ll~~~~l~v~~E~~v~~av~ 233 (1026)
|..|+-.+- -+++. .-+...|...+ +.+++..+.|.-...+.+..+.+-...+- .+-+..++
T Consensus 169 C~mfmDrnA-----~~lL~---~~sFn~LSk~s-------L~e~l~RDsFfApE~~IFlAv~~W~~~Ns---ke~~k~~~ 230 (620)
T KOG4350|consen 169 CMMFMDRNA-----DQLLE---DPSFNRLSKDS-------LKELLARDSFFAPELKIFLAVRSWHQNNS---KEASKVLL 230 (620)
T ss_pred HHHHHhcCH-----Hhhhc---CcchhhhhHHH-------HHHHHhhhcccchHHHHHHHHHHHHhcCc---hhhHHHHH
Confidence 999987652 22221 12222222222 23444455555555554444444332221 22334444
Q ss_pred HHHhcChhHHHHHHHHHHhhcccC-CCCHHHHHhhccc
Q psy9769 234 AWVNYDLESRQKHVAELMEYVRLP-LLSEDYLIQRVEE 270 (1026)
Q Consensus 234 ~Wi~~~~~~r~~~~~~ll~~vr~~-~l~~~~l~~~~~~ 270 (1026)
..++--.- .+.+||+.||.. +++++.+...++.
T Consensus 231 ~~VRLPLm----~lteLLnvVRPsGllspD~iLDAI~v 264 (620)
T KOG4350|consen 231 ELVRLPLM----TLTELLNVVRPSGLLSPDTILDAIEV 264 (620)
T ss_pred HHHhhhhc----cHHHHHhccCcccCcCHHHHHHHHHh
Confidence 44443322 346788999975 6788888877653
No 378
>PRK04043 tolB translocation protein TolB; Provisional
Probab=49.43 E-value=4.4e+02 Score=30.45 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=61.1
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEecc--CCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-E
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGF--NGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS-L 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~--~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~ 409 (1026)
.++|.+|..+++=+.+...+.. .......-+| +|.+.-.. +.+++.+|..+..++++.+.+.. .......-+| +
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPDG~~ 290 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI-DVNGNFVEDDKR 290 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc-cCccEECCCCCE
Confidence 4899999988876666543221 1112223344 55544332 34789999999999888754431 1111222244 6
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEccC
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP 440 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 440 (1026)
||...... ....++.+|..+++.+.+..
T Consensus 291 I~F~Sdr~---g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 291 IVFVSDRL---GYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred EEEEECCC---CCceEEEEECCCCCeEeCcc
Confidence 77664332 23689999999988877653
No 379
>KOG3297|consensus
Probab=49.21 E-value=33 Score=33.52 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=42.7
Q ss_pred CCcEEEEEEEEEecceEEEEe--CCCceeeEeccccCc-------------ccc----cCcccccccCCEEEEEEEEEeC
Q psy9769 949 PGRLVWGVLKEKMPGGVRVEF--DGDISGVFPTSAMSQ-------------ATR----TLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 949 ~G~~v~G~V~~i~~~G~fV~~--~~~i~Gl~~~~~ls~-------------~~~----~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
+|.++.|+|++-.+.|+-|.+ +++ =+||.+-|.+ ++- +..+-.|-+|..|++||.+..-
T Consensus 81 ~gEVi~gki~~cs~eG~rvtl~FFdD--I~IP~~~L~~p~~f~~~e~vWVWey~~Edg~~~~Ly~D~~e~IRFRV~~e~f 158 (202)
T KOG3297|consen 81 VGEVITGKIKECSEEGLRVTLGFFDD--IFIPKEMLPEPCVFEPDEQVWVWEYEQEDGPGTKLYFDVGEEIRFRVEDESF 158 (202)
T ss_pred cceEEEEEeecCCccceEEEEEeeec--eeechhhCCCCcccccccEEEEEEecccCCCCceeEecCCCeEEEEEeeecc
Confidence 399999999999999988775 444 4788776643 222 1122356799999999998743
No 380
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=49.07 E-value=74 Score=26.52 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred CcEEEEEEEEEecce-EEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGG-VRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G-~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
.-.+.|+|....+.+ .-|++++|..=+.|.+-=-.. -.-...+||.|.+.....|..+..++
T Consensus 6 ~~e~~g~V~e~L~~~~f~v~~edg~~~~ahI~GKmr~----~~i~I~~GD~V~Ve~~~~d~~kg~I~ 68 (75)
T COG0361 6 EIEMEGTVIEMLPNGRFRVELENGHERLAHISGKMRK----NRIRILPGDVVLVELSPYDLTKGRIV 68 (75)
T ss_pred ccEEEEEEEEecCCCEEEEEecCCcEEEEEccCcchh----eeEEeCCCCEEEEEecccccccccEE
Confidence 457899999999888 558999988888776522111 11246799999999988887776654
No 381
>KOG0315|consensus
Probab=49.03 E-value=2.1e+02 Score=29.90 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEE--ECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVF--LHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEA 396 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~ 396 (1026)
++.....+|. ..+..||..++.=.++...-.++.+-+++. .+|+-...||.++.+.++|...-.-.+.-..+.
T Consensus 51 dk~~LAaa~~-----qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s 125 (311)
T KOG0315|consen 51 DKKDLAAAGN-----QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS 125 (311)
T ss_pred CcchhhhccC-----CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCC
Confidence 3444555553 468899998875333333223344444443 368888889999999999988733332222222
Q ss_pred CcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEE
Q psy9769 397 RRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNM 437 (1026)
Q Consensus 397 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 437 (1026)
|-- ..+...++--++-|.. ...++++|+.++..+.
T Consensus 126 pVn--~vvlhpnQteLis~dq----sg~irvWDl~~~~c~~ 160 (311)
T KOG0315|consen 126 PVN--TVVLHPNQTELISGDQ----SGNIRVWDLGENSCTH 160 (311)
T ss_pred Ccc--eEEecCCcceEEeecC----CCcEEEEEccCCcccc
Confidence 221 2222333322232321 2468999999987754
No 382
>KOG0291|consensus
Probab=48.84 E-value=4.2e+02 Score=32.26 Aligned_cols=124 Identities=10% Similarity=0.123 Sum_probs=69.4
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEE--ECCEE
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAV--LNSLI 410 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i 410 (1026)
+..+.+|+-.+..+.....-..+|.......-+|.+.+.|+.++.+.+||..+...... ....-++++++. ..|+.
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT--FteHts~Vt~v~f~~~g~~ 406 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVT--FTEHTSGVTAVQFTARGNV 406 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEE--eccCCCceEEEEEEecCCE
Confidence 55777777665555443333344444444445789999999999999999887654321 222233444433 35555
Q ss_pred EEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEEC--CEEEEEeCCC
Q psy9769 411 YAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLN--GCLYAENLDG 464 (1026)
Q Consensus 411 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~lyv~GG~~ 464 (1026)
.+.--.+| +|-.||...-.--..-.-|.|+.. ++++.+ |.|.+.|+.+
T Consensus 407 llssSLDG-----tVRAwDlkRYrNfRTft~P~p~Qf-scvavD~sGelV~AG~~d 456 (893)
T KOG0291|consen 407 LLSSSLDG-----TVRAWDLKRYRNFRTFTSPEPIQF-SCVAVDPSGELVCAGAQD 456 (893)
T ss_pred EEEeecCC-----eEEeeeecccceeeeecCCCceee-eEEEEcCCCCEEEeeccc
Confidence 55544443 455566543322221233455444 444454 7788887743
No 383
>COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]
Probab=48.69 E-value=58 Score=31.10 Aligned_cols=58 Identities=14% Similarity=-0.066 Sum_probs=40.5
Q ss_pred CcEEEEEEEEEecce---------EEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGG---------VRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G---------~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|.+.+=+|..+.+.| ++|+|+++-..+.+..+ ++|+ ..++|+.|++++.....+....
T Consensus 64 G~V~t~Tv~~~~~~~~~~~~P~viaiV~l~~~~~i~~~i~~------~~p~-~v~iGm~V~~v~~~~~~~~~~~ 130 (140)
T COG1545 64 GKVETYTVVYVKPPGFSLEEPYVIAIVELEEGGRILGQLVD------VDPD-DVEIGMKVEAVFRKREEDGGRG 130 (140)
T ss_pred eEEEEEEEEeeCCCCcccCCCEEEEEEEeCCCCceEEEEEe------cCcc-cccCCCEEEEEEEEccccCCce
Confidence 666666666666654 77888876666766554 2443 4689999999999877665443
No 384
>KOG1004|consensus
Probab=48.11 E-value=68 Score=32.29 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=44.3
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCc-ccccCcccccccCCEEEEEEEEEeCC
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ-ATRTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~-~~~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
|+.|-|.|+.....+.-|.+.+-=-+.+|.-...- .+...|+ +++||.|-|+|..-+++
T Consensus 66 ~D~VIGiV~~~~gd~ykVDigg~~~a~L~~laFe~AtkrNrPn--l~vGdliyakv~~a~~~ 125 (230)
T KOG1004|consen 66 GDHVIGIVTSKSGDIYKVDIGGSEPASLSYLAFEGATKRNRPN--LQVGDLIYAKVVDANKD 125 (230)
T ss_pred CCEEEEEEEeccCceEEEecCCCCeeeeeeccccCccccCCCc--cccccEEEEEEEecCCC
Confidence 99999999999999999999774455555443322 2334455 89999999999987653
No 385
>PRK15463 cold shock-like protein CspF; Provisional
Probab=47.65 E-value=69 Score=26.39 Aligned_cols=50 Identities=10% Similarity=0.020 Sum_probs=35.6
Q ss_pred EEEEEEEEec-ceE-EEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 953 VWGVLKEKMP-GGV-RVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 953 v~G~V~~i~~-~G~-fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
.+|+|+...+ .|. ||+-++ +=+-|+|.+.|..... ..+++||.|.+.|..
T Consensus 5 ~~G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g~----~~l~~G~~V~f~v~~ 57 (70)
T PRK15463 5 MTGIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRDA----EELTTGLRVEFCRIN 57 (70)
T ss_pred ceEEEEEEeCCCceEEEecCCCCccEEEEehhhhhcCC----CCCCCCCEEEEEEEE
Confidence 4799997744 442 666654 5789999999965432 246799999997654
No 386
>KOG0286|consensus
Probab=47.57 E-value=3.6e+02 Score=28.96 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=64.9
Q ss_pred EEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEe---CC-CCcCCcceeEEEEE--CCE
Q psy9769 336 VECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSS---AP-PMEARRSTLGVAVL--NSL 409 (1026)
Q Consensus 336 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~---~~-~~p~~r~~~~~~~~--~~~ 409 (1026)
+.++|..|..=...-|||..---.++..-.+.....||.++...+|+..+..=+- +. .++--..+.+++.+ ++.
T Consensus 79 lIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ 158 (343)
T KOG0286|consen 79 LIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH 158 (343)
T ss_pred EEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc
Confidence 4455554322222234554433333444467888999999999999988653221 11 23333444455544 344
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEccCC-CCCcceeEEEEECCEEEEEeCCCceee
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPM-STRRSSVGVGVLNGCLYAENLDGRILG 468 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~~~~lyv~GG~~~~~~ 468 (1026)
|.--.| . .++-.+|.++++=...-.- ..-.........+.+.||-||......
T Consensus 159 ilT~SG--D----~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 159 ILTGSG--D----MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred eEecCC--C----ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 433222 1 4667788887765432110 000000111111678999998655433
No 387
>PRK01742 tolB translocation protein TolB; Provisional
Probab=47.10 E-value=5.1e+02 Score=29.96 Aligned_cols=136 Identities=12% Similarity=0.006 Sum_probs=65.4
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCE-
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSL- 409 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~- 409 (1026)
..++.+|..+..-+.+...+.... .....-+| .|++....++ +++.+|..+.....+..-... .......-+|+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpDG~~ 305 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGN-NTEPSWSPDGQS 305 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCC-cCCEEECCCCCE
Confidence 468899998877666654432211 11222345 4544433444 467788888777666432211 11122223554
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECC-EEEEEeCCCceeeEEcCcccEEEe
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNG-CLYAENLDGRILGCVKEITDWGLI 479 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~W~~~ 479 (1026)
|+.....++ ...++.+|..+..-+.+.. .... ....-++ .|++.++ ..+..+|..+..|..+
T Consensus 306 i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~~-~~~SpDG~~ia~~~~-~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 306 ILFTSDRSG---SPQVYRMSASGGGASLVGG---RGYS-AQISADGKTLVMING-DNVVKQDLTSGSTEVL 368 (429)
T ss_pred EEEEECCCC---CceEEEEECCCCCeEEecC---CCCC-ccCCCCCCEEEEEcC-CCEEEEECCCCCeEEe
Confidence 554432222 2577777776554333321 1111 1122244 4544444 4455555555555443
No 388
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=45.50 E-value=76 Score=26.50 Aligned_cols=51 Identities=10% Similarity=-0.043 Sum_probs=35.3
Q ss_pred EEEEEEEec-ceE-EEEeC-CCceeeEeccccCcccccCcccccccCCEEEEEEEEEe
Q psy9769 954 WGVLKEKMP-GGV-RVEFD-GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYE 1008 (1026)
Q Consensus 954 ~G~V~~i~~-~G~-fV~~~-~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd 1008 (1026)
+|+|+...+ .|. ||.-. ++-+-|+|.+.|..... ..+.+||.|++.|..=+
T Consensus 3 ~G~Vkwfn~~KGfGFI~~~~gg~dVFvH~s~i~~~g~----~~l~~G~~V~f~~~~~~ 56 (74)
T PRK09937 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGY----RTLKAGQSVQFDVHQGP 56 (74)
T ss_pred CeEEEEEeCCCCeEEEeeCCCCccEEEEEeeccccCC----CCCCCCCEEEEEEEECC
Confidence 488887633 443 66554 46899999999964432 34689999999876543
No 389
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=45.44 E-value=4.8e+02 Score=29.14 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=73.4
Q ss_pred EEcCCCCCCCcE--EEEEECCCCcEEEcCCCCcccccee-eEE--ECCEEEEEecc---CCCeEEEeCC--CCeEEeCCC
Q psy9769 324 VVGGQAPKAIRS--VECYDFKTERWQSVAEMPTRRCRAG-LVF--LHEKVYAVGGF---NGSLRVYDPS--TNEWSSAPP 393 (1026)
Q Consensus 324 v~GG~~~~~~~~--~~~yd~~~~~W~~~~~~p~~r~~~~-~~~--~~~~iyv~GG~---~~~~~~yd~~--~~~W~~~~~ 393 (1026)
++|+++...... ++.||..+.+|+.+...... .+++ ++. -++.||+.... .+.+..|... +.+.+.+..
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEG-ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEEES-SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCC-CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 345544322334 44567799999877653222 2222 223 35799999764 4566666544 467877766
Q ss_pred CcCCcceeEEEEE---CCEEEEEeccCCCCCCCEEEEEECCCC-cEEEc---------cCCC---CCcceeEEEEE--CC
Q psy9769 394 MEARRSTLGVAVL---NSLIYAVGGFDGSSGLNSAEVYDPSTE-KWNMI---------APMS---TRRSSVGVGVL--NG 455 (1026)
Q Consensus 394 ~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~-~W~~~---------~~~p---~~r~~~~~~~~--~~ 455 (1026)
.+......+-..+ +..||+.-- . ...+..|++..+ .-... .+-+ ..-..|.+... ++
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany-~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANY-G----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEET-T----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eccCCCCcEEEEEecCCCEEEEEEc-c----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 5532223222333 445666521 1 256778877653 22111 1111 22234555544 34
Q ss_pred EEEEEe-CCCceeeEEcCc
Q psy9769 456 CLYAEN-LDGRILGCVKEI 473 (1026)
Q Consensus 456 ~lyv~G-G~~~~~~~~~~~ 473 (1026)
.+|+.. |.+.+..|+...
T Consensus 157 ~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp EEEEEETTTTEEEEEEE-T
T ss_pred EEEEEecCCCEEEEEEEeC
Confidence 788775 556666665544
No 390
>KOG0278|consensus
Probab=45.32 E-value=1.2e+02 Score=31.63 Aligned_cols=82 Identities=22% Similarity=0.252 Sum_probs=46.6
Q ss_pred EEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcce--eEEE-EECCEEE
Q psy9769 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRST--LGVA-VLNSLIY 411 (1026)
Q Consensus 335 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~-~~~~~iy 411 (1026)
++-.+|+.+-.--.--.||......+ .--+..+||.||.+..++.||..|+. ++........+ |+.- .-+|.+|
T Consensus 206 sV~Fwdaksf~~lKs~k~P~nV~SAS-L~P~k~~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYKMPCNVESAS-LHPKKEFFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred eeEEeccccccceeeccCcccccccc-ccCCCceEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCcee
Confidence 56666665533222234565433322 22356899999999999999998875 22222112222 2211 2388999
Q ss_pred EEeccCCC
Q psy9769 412 AVGGFDGS 419 (1026)
Q Consensus 412 v~GG~~~~ 419 (1026)
..|-.++.
T Consensus 283 AsGSEDGT 290 (334)
T KOG0278|consen 283 ASGSEDGT 290 (334)
T ss_pred eccCCCce
Confidence 99876653
No 391
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=45.31 E-value=29 Score=28.16 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=33.8
Q ss_pred CcEEEEEEEEEecceEEEEeC----CC--ceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFD----GD--ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELL 1013 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~----~~--i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~ 1013 (1026)
-+.+.|+|.++.+.|.++++. ++ +...++.+.+ . +-.+++|+.|-+.| ++..+.
T Consensus 6 ~N~l~g~I~~i~~~g~~~~v~l~~~~~~~l~a~i~~~~~-----~--~l~l~~G~~v~~~i---k~~~v~ 65 (69)
T TIGR00638 6 RNQLKGKVVAIEDGDVNAEVDLLLGGGTKLTAVITLESV-----A--ELGLKPGKEVYAVI---KAPWVI 65 (69)
T ss_pred ccEEEEEEEEEEECCCeEEEEEEECCCCEEEEEecHHHH-----h--hCCCCCCCEEEEEE---ECcEEE
Confidence 568999999998888555443 32 3444444333 2 23478999998754 444443
No 392
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=44.74 E-value=1e+02 Score=24.57 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=37.9
Q ss_pred EEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCe
Q psy9769 952 LVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGE 1011 (1026)
Q Consensus 952 ~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~ 1011 (1026)
-++|+|++|.+...-+.+.+|= -+--..+. + -+.+++|..|.+---.+|.++
T Consensus 4 ~veG~I~~id~~~~titLdDGk-sy~lp~ef------~-~~~L~~G~kV~V~yd~~~gk~ 55 (61)
T PF07076_consen 4 DVEGTIKSIDPETMTITLDDGK-SYKLPEEF------D-FDGLKPGMKVVVFYDEVDGKR 55 (61)
T ss_pred cceEEEEEEcCCceEEEecCCC-EEECCCcc------c-ccccCCCCEEEEEEEccCCcE
Confidence 5799999999999999999883 33222333 1 256899999988777666443
No 393
>KOG4078|consensus
Probab=44.33 E-value=38 Score=31.29 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=49.5
Q ss_pred CcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeee
Q psy9769 950 GRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLL 1014 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~ 1014 (1026)
|..|.|+|--|-..-+++.|+.....++..-++ | .+.|..|-.|+-++++..-.+.+|
T Consensus 83 gklV~GkIfhiV~~DlYIDFG~KFhcVC~rP~~------n-~e~Y~~GaRVrlRl~DlELs~rFL 140 (173)
T KOG4078|consen 83 GKLVIGKIFHIVEEDLYIDFGGKFHCVCKRPAL------N-GEAYQKGARVRLRLIDLELSERFL 140 (173)
T ss_pred CcEEEeeeeeeeccceEEecCCeEEEEEcCcCc------C-HHHhhcCceEEEEEcChhHhhhhh
Confidence 999999999999999999999999999887766 2 356899999999999877666665
No 394
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=44.10 E-value=39 Score=24.02 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=17.2
Q ss_pred eeeEEECCEEEEEeccCCCeEEEeCCC
Q psy9769 359 AGLVFLHEKVYAVGGFNGSLRVYDPST 385 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG~~~~~~~yd~~~ 385 (1026)
.+.++.++.+|+. +.++.++++|+.|
T Consensus 15 ~~~~v~~g~vyv~-~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVG-TGDGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE--TTSEEEEEETT-
T ss_pred cCCEEECCEEEEE-cCCCEEEEEeCCC
Confidence 3446678888875 4588999999864
No 395
>KOG2048|consensus
Probab=43.82 E-value=3.6e+02 Score=32.24 Aligned_cols=123 Identities=15% Similarity=0.196 Sum_probs=70.6
Q ss_pred EEEEECCCCcEEEcCCCCccc-------cceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEE-C
Q psy9769 336 VECYDFKTERWQSVAEMPTRR-------CRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL-N 407 (1026)
Q Consensus 336 ~~~yd~~~~~W~~~~~~p~~r-------~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~ 407 (1026)
+.++|..++.=-.+-.|...| .-.++.++.....+.|-..|.+..||+...+-.+--....+-. .++++. +
T Consensus 178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV-l~Lav~~~ 256 (691)
T KOG2048|consen 178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADV-LALAVADN 256 (691)
T ss_pred EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcce-eEEEEcCC
Confidence 567777766544333333222 2245666777777888888999999998876432211111211 233333 4
Q ss_pred CEEEEEeccCCCCCCCEEEEEEC--CCCcEEEccCC-CCCcceeEEEEECCEEEEEeCCCc
Q psy9769 408 SLIYAVGGFDGSSGLNSAEVYDP--STEKWNMIAPM-STRRSSVGVGVLNGCLYAENLDGR 465 (1026)
Q Consensus 408 ~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~-p~~r~~~~~~~~~~~lyv~GG~~~ 465 (1026)
+.-++.+|.++ .+..|-. ...+|...... -.++.--+++++++ ..+.||...
T Consensus 257 ~d~vfsaGvd~-----~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~ 311 (691)
T KOG2048|consen 257 EDRVFSAGVDP-----KIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDF 311 (691)
T ss_pred CCeEEEccCCC-----ceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceee
Confidence 34555667653 3445543 33459776543 35667778888888 555677543
No 396
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=43.80 E-value=2.9e+02 Score=28.98 Aligned_cols=130 Identities=16% Similarity=0.280 Sum_probs=65.8
Q ss_pred CcEEEEEE---CCCCcEEE--cCCCCc-------cccceeeEEECCEEEEEeccCCCe------EEE-----eCCCCe-E
Q psy9769 333 IRSVECYD---FKTERWQS--VAEMPT-------RRCRAGLVFLHEKVYAVGGFNGSL------RVY-----DPSTNE-W 388 (1026)
Q Consensus 333 ~~~~~~yd---~~~~~W~~--~~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~------~~y-----d~~~~~-W 388 (1026)
+...+.|+ ...+.|+. ++..|. .-.-|+.|.+++.=|.+|=.++++ .+| +..... =
T Consensus 101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vr 180 (367)
T PF12217_consen 101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVR 180 (367)
T ss_dssp EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EE
T ss_pred hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceee
Confidence 34445555 35677874 444444 234578888998888998666532 122 211111 1
Q ss_pred EeCCC-CcCCcceeEEEEECCEEEEEe-ccCCCCCCCEEEEEECCCCcEEEcc-CCCCCcceeEEEEECCEEEEEeC
Q psy9769 389 SSAPP-MEARRSTLGVAVLNSLIYAVG-GFDGSSGLNSAEVYDPSTEKWNMIA-PMSTRRSSVGVGVLNGCLYAENL 462 (1026)
Q Consensus 389 ~~~~~-~p~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG 462 (1026)
+.++. .....+..+.-.++|.+|+.- |..+...-+.+.+-+.....|+.+. +-..-......+..++.||+||.
T Consensus 181 r~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs 257 (367)
T PF12217_consen 181 RIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS 257 (367)
T ss_dssp EE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred eechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence 22332 222333445556899999985 4444444567888888888898775 22233345556788999999985
No 397
>KOG0279|consensus
Probab=43.74 E-value=1.8e+02 Score=30.93 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=46.6
Q ss_pred eeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 359 AGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
...+..+|.+...||.++....+|....+= +-.+...-.-++++...++.+++-+.. .++-.||.++..
T Consensus 197 t~~vSpDGslcasGgkdg~~~LwdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~-----~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 197 TVTVSPDGSLCASGGKDGEAMLWDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATA-----TSIKIWDLESKA 265 (315)
T ss_pred EEEECCCCCEEecCCCCceEEEEEccCCce--eEeccCCCeEeeEEecCCceeEeeccC-----CceEEEeccchh
Confidence 345566899999999999999999876543 333333334456677777777776654 346677766554
No 398
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=43.65 E-value=35 Score=30.83 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=33.4
Q ss_pred EEEEEEEEEecce--EEEEeCCC---ceeeEeccccCcccccCcccccccCCEEEEE
Q psy9769 952 LVWGVLKEKMPGG--VRVEFDGD---ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQ 1003 (1026)
Q Consensus 952 ~v~G~V~~i~~~G--~fV~~~~~---i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~ 1003 (1026)
.+.|+|.++...| +|+.+-++ +..++..+++..+...+....+..|+.|.+.
T Consensus 3 ~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~ 59 (108)
T cd04322 3 SVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVT 59 (108)
T ss_pred EEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 5789999998887 99999764 5656655544222111222236788887664
No 399
>KOG3298|consensus
Probab=43.42 E-value=32 Score=32.93 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=24.3
Q ss_pred CCceEEeeeecccCCcceeeccccceeecc
Q psy9769 647 PGMKVIANICQQLPHGWKAKLKNTQFKAFI 676 (1026)
Q Consensus 647 ~G~~v~~~V~~v~~~G~~v~~~~~~~~gfi 676 (1026)
.|++|+|+|+++.+.|++++. +-++-|+
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~--GPl~~f~ 108 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARS--GPLEVFY 108 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEec--cceEeee
Confidence 599999999999999999999 5566655
No 400
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=41.57 E-value=27 Score=27.85 Aligned_cols=44 Identities=34% Similarity=0.348 Sum_probs=30.5
Q ss_pred ccccccccccccc----eeeeecccc-eeeeeeccc-----cccCceEEEEEee
Q psy9769 567 VLPACVHSKEDHG----YLLDVGVKN-TRAFIKYDS-----VILGQIVTCMISK 610 (1026)
Q Consensus 567 ~v~g~V~sv~d~g----~~v~~G~~~-~~gf~~~~~-----~~~G~~v~~~v~~ 610 (1026)
.+.|+|..+++.| +.+++|... +.+.++... +++|+.+.+.+..
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~~~l~a~it~~~~~~L~L~~G~~V~~~ik~ 59 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGGETLTARITPESAEELGLKPGDEVYASIKA 59 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTSEEEEEEEEHHHHHHCT-STT-EEEEEE-G
T ss_pred EEEEEEEEEEECCCeEEEEEEECCCCEEEEEEcHHHHHHcCCCCCCEEEEEEeh
Confidence 5789999999999 455555555 777777543 7789999888754
No 401
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.50 E-value=4.1e+02 Score=27.21 Aligned_cols=139 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCC-ccccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMP-TRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEAR 397 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~ 397 (1026)
++.++..-|.-+. +.+..+|..+.+=..-.+++ ..-.+-+.+.+++.+|..-=..+-.+.||+ ++.+.+...+.+
T Consensus 55 ~g~i~esTG~yg~--S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~--~t~~~lg~~~y~ 130 (262)
T COG3823 55 DGHILESTGLYGF--SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDA--DTLEELGRFSYE 130 (262)
T ss_pred CCEEEEecccccc--ceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEECh--HHhhhhcccccC
Q ss_pred cceeEEEEECCEEEEEec----------------------------------------cCCCCCCCEEEEEECCCCc---
Q psy9769 398 RSTLGVAVLNSLIYAVGG----------------------------------------FDGSSGLNSAEVYDPSTEK--- 434 (1026)
Q Consensus 398 r~~~~~~~~~~~iyv~GG----------------------------------------~~~~~~~~~v~~yd~~~~~--- 434 (1026)
-.+.+.+.-+..|.+--| +.+-...+.+-+.||.+++
T Consensus 131 GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 131 GEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred CcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcEEE
Q ss_pred EEEccCCC---CCccee-----EEEEE--CCEEEEEe
Q psy9769 435 WNMIAPMS---TRRSSV-----GVGVL--NGCLYAEN 461 (1026)
Q Consensus 435 W~~~~~~p---~~r~~~-----~~~~~--~~~lyv~G 461 (1026)
|-.+++++ .++..+ +.+.. .+++|+.|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
No 402
>KOG0296|consensus
Probab=41.37 E-value=5.3e+02 Score=28.56 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=70.6
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCcccc--ceeeEEECCEEEEEeccCCCeEEEeCCCC--eEEeCCCC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRC--RAGLVFLHEKVYAVGGFNGSLRVYDPSTN--EWSSAPPM 394 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~yd~~~~--~W~~~~~~ 394 (1026)
+..+.+.||-+ +-.+.++..+..|-. .++.... -.+...++|.+.+.||.++.+.+|...++ +|....++
T Consensus 75 ~~~l~aTGGgD----D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~ 148 (399)
T KOG0296|consen 75 NNNLVATGGGD----DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEV 148 (399)
T ss_pred CCceEEecCCC----ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeeccc
Confidence 34677778754 345778888877542 2222222 23445568899999999999999887765 47654222
Q ss_pred cC--CcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeC
Q psy9769 395 EA--RRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENL 462 (1026)
Q Consensus 395 p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG 462 (1026)
.. -...|- .+.|+++|-.+ .++|+|..-...-.++-+-+..++..+-..-+|+-.+.|-
T Consensus 149 ~dieWl~WHp----~a~illAG~~D-----GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 149 EDIEWLKWHP----RAHILLAGSTD-----GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred CceEEEEecc----cccEEEeecCC-----CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence 11 011111 24566666544 4688888766433222222333333333333555544443
No 403
>PTZ00420 coronin; Provisional
Probab=41.23 E-value=5.2e+02 Score=31.17 Aligned_cols=62 Identities=8% Similarity=0.208 Sum_probs=38.2
Q ss_pred CEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEE-EECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 366 EKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVA-VLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 366 ~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
..+++.||.++.+.+||..+.+=. ..+..+..-.+++ ..+|.+++.|+.+ ..+..||+.+++
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~ 200 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQE 200 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCc
Confidence 356678899999999999876411 1111111112222 2367888777654 568899998754
No 404
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=41.23 E-value=1.6e+02 Score=24.88 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=43.3
Q ss_pred EEEEEEEEecceEE-EEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 953 VWGVLKEKMPGGVR-VEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 953 v~G~V~~i~~~G~f-V~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+.|.|++....+.| |++++|..-+++.+ -+... .-..+.||.|.+.....|+.+..++
T Consensus 2 ~~g~V~~~~g~~~~~V~~~~g~~~la~i~---gK~rk--~iwI~~GD~V~Ve~~~~d~~kg~Iv 60 (77)
T cd05793 2 EYGQVEKMLGNGRLEVRCFDGKKRLCRIR---GKMRK--RVWINEGDIVLVAPWDFQDDKADII 60 (77)
T ss_pred EEEEEEEEcCCCEEEEEECCCCEEEEEEc---hhhcc--cEEEcCCCEEEEEeccccCCEEEEE
Confidence 57899999888855 68888888776654 22222 3457899999999888888877775
No 405
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=40.11 E-value=1.7e+02 Score=27.61 Aligned_cols=65 Identities=17% Similarity=0.145 Sum_probs=41.0
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEE---CCEEEEEeCCCceeeEEcCccc--EEEe
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVL---NGCLYAENLDGRILGCVKEITD--WGLI 479 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~--W~~~ 479 (1026)
.+.++|-. +.+..||...|+=-.-..+|..........+ ...+.++||...+..||-...+ |+..
T Consensus 65 D~LliGt~------t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 65 DCLLIGTQ------TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CEEEEecc------ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 45666542 6799999988773333344433332222222 4679999998888888887654 8764
No 406
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=39.84 E-value=1.5e+02 Score=23.29 Aligned_cols=54 Identities=15% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCCCcEEEEEEEEEecceEEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCee
Q psy9769 947 TKPGRLVWGVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGEL 1012 (1026)
Q Consensus 947 ~~~G~~v~G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~ 1012 (1026)
.++|++++-.|....+.|-.+-=.+ +..=+++.. . -. +|+.|+|+|.+..+.-+
T Consensus 2 ~~~G~~~~VlVe~~~~~g~~~gr~~~~~~V~v~~~----------~-~~-iG~~v~v~I~~~~~~~l 56 (61)
T PF01938_consen 2 SYVGKTLEVLVEELGDEGQGIGRTDNGKVVFVPGG----------L-PL-IGEFVKVRITKAKKNYL 56 (61)
T ss_dssp --TTEEEEEEEEEE-TTSEEEEEET-TEEEEETT-------------T---TEEEEEEEEEE-SSEE
T ss_pred ccCCcEEEEEEEEecCCCEEEEEeCCCeEEEECCC----------C-CC-CCCEEEEEEEEeeCCcE
Confidence 3569999999988887665554433 433333322 1 12 79999999999987544
No 407
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=39.35 E-value=1.9e+02 Score=29.31 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=42.2
Q ss_pred CCEEEEEec-cCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCC
Q psy9769 365 HEKVYAVGG-FNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMST 443 (1026)
Q Consensus 365 ~~~iyv~GG-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 443 (1026)
++++.++-| ....+..||... ..+..++........-.-+|+..++||..+. ...++.||.. +++.+.....
T Consensus 71 g~~favi~g~~~~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~--~~~~i~~~~~ 143 (194)
T PF08662_consen 71 GNEFAVIYGSMPAKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVR--KKKKISTFEH 143 (194)
T ss_pred CCEEEEEEccCCcccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECC--CCEEeecccc
Confidence 445655544 456788999963 3333333322222223347888899887532 2578899987 4555554433
Q ss_pred C
Q psy9769 444 R 444 (1026)
Q Consensus 444 ~ 444 (1026)
+
T Consensus 144 ~ 144 (194)
T PF08662_consen 144 S 144 (194)
T ss_pred C
Confidence 3
No 408
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=39.35 E-value=1.8e+02 Score=25.99 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=46.3
Q ss_pred CcEEEEEEEEEecceEE-EEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeec
Q psy9769 950 GRLVWGVLKEKMPGGVR-VEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G~f-V~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
-..+.|.|+.....+.| |++.+|..-+++.+ -+... .=..+.||.|.+.....|+.+..++
T Consensus 20 e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~---GK~Rk--~IwI~~GD~VlVe~~~~~~~kg~Iv 81 (100)
T PRK04012 20 EGEVFGVVEQMLGANRVRVRCMDGVERMGRIP---GKMKK--RMWIREGDVVIVAPWDFQDEKADII 81 (100)
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEc---hhhcc--cEEecCCCEEEEEecccCCCEEEEE
Confidence 45689999999988866 58888888887754 22221 3457899999999988888877774
No 409
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=39.26 E-value=5.6e+02 Score=28.98 Aligned_cols=83 Identities=14% Similarity=0.197 Sum_probs=45.9
Q ss_pred EEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccC-----CC
Q psy9769 368 VYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP-----MS 442 (1026)
Q Consensus 368 iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~-----~p 442 (1026)
+.+++ ..+.+..+. .+.|+.+..+. -..-.++.++|++|++.- ...++.++..- .=..+++ +.
T Consensus 175 vl~i~-~~g~l~~w~--~~~Wt~l~~~~--~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~ 242 (373)
T PLN03215 175 VLGIG-RDGKINYWD--GNVLKALKQMG--YHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENIT 242 (373)
T ss_pred EEEEe-ecCcEeeec--CCeeeEccCCC--ceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceeccccc
Confidence 44444 456665565 48999997422 224467889999999832 23466666321 1111111 11
Q ss_pred CC--cceeEEEEECCEEEEEeC
Q psy9769 443 TR--RSSVGVGVLNGCLYAENL 462 (1026)
Q Consensus 443 ~~--r~~~~~~~~~~~lyv~GG 462 (1026)
.. +.....+...|.||++..
T Consensus 243 ~g~~~~~~yLVEs~GdLLmV~R 264 (373)
T PLN03215 243 DGCWTGDRRFVECCGELYIVER 264 (373)
T ss_pred CCcccCceeEEEECCEEEEEEE
Confidence 11 122345667788998865
No 410
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=39.12 E-value=3.1e+02 Score=36.01 Aligned_cols=65 Identities=15% Similarity=0.300 Sum_probs=43.7
Q ss_pred CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcC----------Cc-ce-eEEEE-ECCEEEEEeccCCCCCCCEEEEEECC
Q psy9769 365 HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEA----------RR-ST-LGVAV-LNSLIYAVGGFDGSSGLNSAEVYDPS 431 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~----------~r-~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~ 431 (1026)
+|.+||.-..++.+.+||+.++....+..... +. .. +++++ -+|++||.-..+ +.|..+|+.
T Consensus 814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N-----n~Irvid~~ 888 (1057)
T PLN02919 814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN-----SLIRYLDLN 888 (1057)
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC-----CEEEEEECC
Confidence 57899999889999999999887765432110 00 11 22232 368899985543 678899987
Q ss_pred CCc
Q psy9769 432 TEK 434 (1026)
Q Consensus 432 ~~~ 434 (1026)
+++
T Consensus 889 ~~~ 891 (1057)
T PLN02919 889 KGE 891 (1057)
T ss_pred CCc
Confidence 765
No 411
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=38.70 E-value=1.1e+02 Score=25.16 Aligned_cols=49 Identities=14% Similarity=-0.010 Sum_probs=34.8
Q ss_pred EEEEEEEEe---cceEEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 953 VWGVLKEKM---PGGVRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 953 v~G~V~~i~---~~G~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
..|+|+... -|| ||+-.+ +-+=++|.+.+..... ..+++||.|++.+..
T Consensus 5 ~~G~Vk~f~~~kGfG-FI~~~~g~~dvfvH~s~l~~~g~----~~l~~G~~V~f~~~~ 57 (70)
T PRK10354 5 MTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAIQNDGY----KSLDEGQKVSFTIES 57 (70)
T ss_pred ceEEEEEEeCCCCcE-EEecCCCCccEEEEEeeccccCC----CCCCCCCEEEEEEEE
Confidence 479998763 344 566544 5789999999954322 346899999997654
No 412
>PRK11712 ribonuclease G; Provisional
Probab=38.61 E-value=41 Score=39.36 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=41.2
Q ss_pred cccCccccccccccccc--ceeeeecccceeeeeeccc------------------------cccCceEEEEEeeeee
Q psy9769 562 LETGLVLPACVHSKEDH--GYLLDVGVKNTRAFIKYDS------------------------VILGQIVTCMISKIKV 613 (1026)
Q Consensus 562 l~~G~~v~g~V~sv~d~--g~~v~~G~~~~~gf~~~~~------------------------~~~G~~v~~~v~~~~~ 613 (1026)
...|.+..|.|.+|.++ +++||+|. +-.||+|.++ ++.||.+.+.|.+-.-
T Consensus 36 ~~vGnIY~G~V~~v~pg~~AAFVdIG~-~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~ 112 (489)
T PRK11712 36 GIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPL 112 (489)
T ss_pred cccccEEEEEEeecCCCCceeEEeeCC-CccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCc
Confidence 34799999999999885 89999996 4689999654 5569999999887533
No 413
>PRK14998 cold shock-like protein CspD; Provisional
Probab=38.56 E-value=1.1e+02 Score=25.53 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=35.6
Q ss_pred EEEEEEEec-ceE-EEEeC-CCceeeEeccccCcccccCcccccccCCEEEEEEEEEeC
Q psy9769 954 WGVLKEKMP-GGV-RVEFD-GDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 954 ~G~V~~i~~-~G~-fV~~~-~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
+|+|+...+ .|. ||.-. ++-+-|+|.+.|..... ..+.+||.|++.+..=+.
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~l~~~g~----~~l~~G~~V~f~~~~~~~ 57 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGY----RTLKAGQSVRFDVHQGPK 57 (73)
T ss_pred CeEEEEEeCCCceEEEecCCCCccEEEEeeeecccCC----CCCCCCCEEEEEEEECCC
Confidence 488887633 442 66554 46799999999954332 346899999998775433
No 414
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=38.24 E-value=5.4e+02 Score=32.31 Aligned_cols=35 Identities=17% Similarity=0.371 Sum_probs=25.2
Q ss_pred eeeEEECCEEEEEeccCCCeEEEeCCCCe--EEeCCCC
Q psy9769 359 AGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WSSAPPM 394 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG~~~~~~~yd~~~~~--W~~~~~~ 394 (1026)
.+-++++|.||+... .+.++.+|..|.+ |+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~-~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECC-CCeEEEEECCCCcEEEEEcCCC
Confidence 455678999999754 4578888988764 8765443
No 415
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.19 E-value=38 Score=34.24 Aligned_cols=76 Identities=25% Similarity=0.297 Sum_probs=55.1
Q ss_pred CCccccCCCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCc---ccccCccccc--ccCCEEEEEEEEEeC-Ceeee
Q psy9769 941 LTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQ---ATRTLVYTRF--VIDTVIVCQILKYED-GELLL 1014 (1026)
Q Consensus 941 ~~~~~~~~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~---~~~~~~~~~~--~~G~~V~~~Vl~vd~-~~~~~ 1014 (1026)
..+++++. |+++.|++.+..+-|.-|.++ |+..-+|..+|.. .........| -.--.|+.+|++++. .+.+|
T Consensus 67 ~~~le~v~-Ge~y~G~l~s~~~~G~~~~v~-G~~~~ip~d~L~~Lg~g~~~Qi~~rFG~V~hlPvev~~v~~~~~~~~rl 144 (225)
T PF09883_consen 67 VYSLEPVK-GETYVGTLISWDEDGYGVDVD-GIFVPIPKDELKPLGPGSPRQIRRRFGLVQHLPVEVEFVKVEDGIEARL 144 (225)
T ss_pred CchhcccC-CceEEEEEEeecccceEEEee-cccccCcHHHhcccCCCCHHHHHHHhCcccCCceEEEEEEcccCccccc
Confidence 34555556 999999999999999999988 9999999999832 2222222333 345567899999988 56666
Q ss_pred chhh
Q psy9769 1015 TEAD 1018 (1026)
Q Consensus 1015 ~~~~ 1018 (1026)
|.++
T Consensus 145 td~q 148 (225)
T PF09883_consen 145 TDEQ 148 (225)
T ss_pred CHHH
Confidence 6544
No 416
>PRK04043 tolB translocation protein TolB; Provisional
Probab=38.12 E-value=6.8e+02 Score=28.87 Aligned_cols=105 Identities=7% Similarity=0.006 Sum_probs=63.4
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEE-CCEEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCE
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFL-HEKVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSL 409 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 409 (1026)
..++|.+|..+..++++.+.+..-... ...- +..||......+ +++++|..+.+.+.+..-. .+.. ...-+|+
T Consensus 256 ~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~ 331 (419)
T PRK04043 256 QPDIYLYDTNTKTLTQITNYPGIDVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKN 331 (419)
T ss_pred CcEEEEEECCCCcEEEcccCCCccCcc-EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC--CcCc-eECCCCC
Confidence 468999999999999887654311111 1222 346777654333 6888999988887665321 1222 2333444
Q ss_pred -EEEEeccCCCC---CCCEEEEEECCCCcEEEccCC
Q psy9769 410 -IYAVGGFDGSS---GLNSAEVYDPSTEKWNMIAPM 441 (1026)
Q Consensus 410 -iyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~ 441 (1026)
|.......... ....++.+|+.++.++.+...
T Consensus 332 ~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 332 YIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred EEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 44443322111 236899999999999988763
No 417
>PRK09890 cold shock protein CspG; Provisional
Probab=38.07 E-value=1.3e+02 Score=24.80 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=35.0
Q ss_pred EEEEEEEEec-ce-EEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 953 VWGVLKEKMP-GG-VRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 953 v~G~V~~i~~-~G-~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
.+|+|+...+ .| =|++-.+ +-+=++|.+.+..... ..+.+||.|++.+..
T Consensus 5 ~~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~~~----~~l~~G~~V~f~~~~ 57 (70)
T PRK09890 5 MTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEF----RTLNENQKVEFSIEQ 57 (70)
T ss_pred ceEEEEEEECCCCcEEEecCCCCceEEEEEeeeccCCC----CCCCCCCEEEEEEEE
Confidence 4799987643 33 2666654 5789999999965432 346799999997654
No 418
>KOG0296|consensus
Probab=37.82 E-value=3.2e+02 Score=30.18 Aligned_cols=69 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEEC--CCCcEEEc
Q psy9769 365 HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDP--STEKWNMI 438 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~~~~W~~~ 438 (1026)
++.+.+.||-+...++|+..+..|-..-+--.---...+..++|.+.+.||.++. +.++.. ...+|...
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~-----v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGK-----VLVFKVSTGGEQWKLD 145 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCcc-----EEEEEcccCceEEEee
Confidence 5678889999999999999999874321111111123344568999999998753 445544 44567764
No 419
>KOG3409|consensus
Probab=37.52 E-value=50 Score=32.00 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=25.7
Q ss_pred cceeeccCcccccchh------hhhhcccccccccceeeeecccc
Q psy9769 670 TQFKAFISPEAMSTAY------NAKYLTNKRVDLDCSVLYVCPRH 708 (1026)
Q Consensus 670 ~~~~gfi~~~~~~~~~------~~~~~~G~~~~~~~~Il~vd~~~ 708 (1026)
..|+|+|+..++...- -+.|..|+-+ .|+||+.+-..
T Consensus 98 ~~FrglirkqdvR~tEkdrv~v~ksFrPgDiV--lAkVis~~~~~ 140 (193)
T KOG3409|consen 98 KSFRGLIRKQDVRATEKDRVKVYKSFRPGDIV--LAKVISLGDGS 140 (193)
T ss_pred hhhcceeehhhccccccchhhhhhccCCCcEE--EEEEeecCCCC
Confidence 4578888777665543 4568888888 89999854443
No 420
>PF11813 DUF3334: Protein of unknown function (DUF3334); InterPro: IPR024513 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.
Probab=37.00 E-value=23 Score=35.24 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=17.1
Q ss_pred ecceEEEEeCCCceeeEec
Q psy9769 961 MPGGVRVEFDGDISGVFPT 979 (1026)
Q Consensus 961 ~~~G~fV~~~~~i~Gl~~~ 979 (1026)
-|.||||-|+||..|||=+
T Consensus 48 PDiGCFvlFDGGFsGLVvi 66 (229)
T PF11813_consen 48 PDIGCFVLFDGGFSGLVVI 66 (229)
T ss_pred CCcceEEEecCCcceEEEE
Confidence 4789999999999999865
No 421
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=35.80 E-value=2.5e+02 Score=28.40 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccC---CCeEEEeCCCCeEEeCCCCc
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN---GSLRVYDPSTNEWSSAPPME 395 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~---~~~~~yd~~~~~W~~~~~~p 395 (1026)
++.+.++-|..+ ..+..||.. ...+...+....+...-.-+|+..++||.. +++.+||..+ ++.+....
T Consensus 71 g~~favi~g~~~---~~v~lyd~~---~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~~ 142 (194)
T PF08662_consen 71 GNEFAVIYGSMP---AKVTLYDVK---GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTFE 142 (194)
T ss_pred CCEEEEEEccCC---cccEEEcCc---ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeeccc
Confidence 345655545322 377889986 333333333222322233467777877754 5689999884 44554444
Q ss_pred CCcceeEEEEECCEEEEEec
Q psy9769 396 ARRSTLGVAVLNSLIYAVGG 415 (1026)
Q Consensus 396 ~~r~~~~~~~~~~~iyv~GG 415 (1026)
.+......-.-+|+.++...
T Consensus 143 ~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 143 HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCcEEEEEEcCCCCEEEEEE
Confidence 33322222223566555544
No 422
>KOG0272|consensus
Probab=34.93 E-value=4.4e+02 Score=29.76 Aligned_cols=111 Identities=13% Similarity=0.220 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeE-EECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLV-FLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEA 396 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~ 396 (1026)
.++.+...||.+.. -.++|..+.+-...-.- .-+.-+++. .-||+-.+.||.++++.+||+.... .+..||.
T Consensus 313 ~DGSL~~tGGlD~~----~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--~ly~ipA 385 (459)
T KOG0272|consen 313 PDGSLAATGGLDSL----GRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--ELYTIPA 385 (459)
T ss_pred CCCceeeccCccch----hheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccc--cceeccc
Confidence 46778888886521 23456666554332111 111122222 3478899999999999999987543 2444443
Q ss_pred CcceeEEEEE---CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCC
Q psy9769 397 RRSTLGVAVL---NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 397 ~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 442 (1026)
-+.-.+-+-+ .|+..+.+|++ +.+-.|. +..|+.+..|.
T Consensus 386 H~nlVS~Vk~~p~~g~fL~TasyD-----~t~kiWs--~~~~~~~ksLa 427 (459)
T KOG0272|consen 386 HSNLVSQVKYSPQEGYFLVTASYD-----NTVKIWS--TRTWSPLKSLA 427 (459)
T ss_pred ccchhhheEecccCCeEEEEcccC-----cceeeec--CCCcccchhhc
Confidence 2222222222 46777777776 3455554 45677766654
No 423
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=34.89 E-value=1.3e+02 Score=24.15 Aligned_cols=49 Identities=12% Similarity=-0.019 Sum_probs=35.0
Q ss_pred EEEEEEEec---ceEEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEEE
Q psy9769 954 WGVLKEKMP---GGVRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKY 1007 (1026)
Q Consensus 954 ~G~V~~i~~---~G~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~v 1007 (1026)
.|+|+...+ || ||+-.+ +=+=++|.+++.... ...+++||.|.+.+..-
T Consensus 2 ~G~Vk~~~~~kGfG-FI~~~~~g~diffh~~~~~~~~----~~~~~~G~~V~f~~~~~ 54 (65)
T cd04458 2 TGTVKWFDDEKGFG-FITPDDGGEDVFVHISALEGDG----FRSLEEGDRVEFELEEG 54 (65)
T ss_pred cEEEEEEECCCCeE-EEecCCCCcCEEEEhhHhhccC----CCcCCCCCEEEEEEEEC
Confidence 578887644 54 555554 778899999996542 24568999999987654
No 424
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=34.49 E-value=1e+02 Score=25.15 Aligned_cols=49 Identities=12% Similarity=0.071 Sum_probs=33.8
Q ss_pred EEEEEEEe-cceE-EEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEE
Q psy9769 954 WGVLKEKM-PGGV-RVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILK 1006 (1026)
Q Consensus 954 ~G~V~~i~-~~G~-fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~ 1006 (1026)
+|+|+-.. +.|. ||+-++ +-+-++|.+.+..... ..+++||.|++.+..
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~g~~dvfvH~s~~~~~g~----~~l~~G~~V~f~~~~ 54 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEGVDGDIFAHYSTIQMDGY----RTLKAGQKVQFEVVQ 54 (68)
T ss_pred CeEEEEEeCCCCeEEEecCCCCccEEEEHHHhhhcCC----CCCCCCCEEEEEEEE
Confidence 58888653 3443 666554 6889999999954332 346899999997654
No 425
>KOG4134|consensus
Probab=33.85 E-value=32 Score=34.72 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeeeechhhhhh
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELLLTEADEKL 1021 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~~~~~~~~~ 1021 (1026)
++|+++.|+|-.+...=+=.=+.+=.-+=||+.+++.. . +....+|+.+++|.+.|..++-.+..|+++
T Consensus 106 k~Gd~LeG~Vn~vS~sHIglLIhg~FNASIpk~nip~d----w-~fI~md~eee~~v~ntD~gnln~~~ed~k~ 174 (253)
T KOG4134|consen 106 KAGDILEGVVNHVSRSHIGLLIHGVFNASIPKTNIPAD----W-EFIAMDQEEEIRVKNTDIGNLNPYIEDEKL 174 (253)
T ss_pred CCCCeeeeeeeecchhhhceeehhhhhccCCCCCCccc----e-eeecCCchhhhceeecccccCCCcchhhhh
Confidence 45999999998775542222222333456777776432 1 135689999999999999999888777665
No 426
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=33.61 E-value=72 Score=25.03 Aligned_cols=28 Identities=14% Similarity=0.039 Sum_probs=23.5
Q ss_pred hhhhcccccccccceeeeeccccceEEeec
Q psy9769 686 NAKYLTNKRVDLDCSVLYVCPRHFHVYLSC 715 (1026)
Q Consensus 686 ~~~~~~G~~~~~~~~Il~vd~~~~~v~lS~ 715 (1026)
......||++ ++-||.||--+-++.+|+
T Consensus 38 g~nl~pGqK~--kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 38 GVNVTPGCKL--KAVILHVDFVKSQVHVSL 65 (65)
T ss_pred ceecCCCcee--EEEEEEEeeEEeEEEEeC
Confidence 3457789999 999999999888888775
No 427
>PF08402 TOBE_2: TOBE domain; InterPro: IPR013611 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. Probably involved in the recognition of small ligands such as molybdenum (e.g. P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT). Found in ABC transporters immediately after the ATPase domain. A strong RPE motif is found at the presumed N terminus of the domain. ; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1Q12_A 1Q1B_C 2AWN_D 3RLF_B 3PUX_B 2R6G_B 3PUV_B 1Q1E_A 3PV0_B 2AWO_A ....
Probab=33.11 E-value=2.2e+02 Score=22.98 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=33.8
Q ss_pred CcEEEEEEEEEecce----EEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeee
Q psy9769 950 GRLVWGVLKEKMPGG----VRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELL 1013 (1026)
Q Consensus 950 G~~v~G~V~~i~~~G----~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~ 1013 (1026)
++.+.|+|+.+.-.| ++|++.++-.-.+....- . . ...+.+||.|.. .++++...
T Consensus 15 ~~~~~g~V~~~~~~G~~~~~~v~~~~~~~~~~~~~~~--~---~-~~~~~~G~~v~l---~~~~~~~~ 73 (75)
T PF08402_consen 15 ENRLPGTVVSVEFLGSETRYTVRLEGGEELVVRVPNS--Q---R-DSPLEPGDEVRL---SWDPDDAH 73 (75)
T ss_dssp TTEEEEEEEEEEEESSEEEEEEEETTSSEEEEEEESS--G-----TTT--TTSEEEE---EEEGGGEE
T ss_pred CCeEEEEEEEEEECCCEEEEEEEECCCCEEEEEecCc--c---c-cCCCCCCCEEEE---EECcccEE
Confidence 459999999999888 667776653323322211 0 0 135889999984 66666554
No 428
>PRK02889 tolB translocation protein TolB; Provisional
Probab=32.49 E-value=8.3e+02 Score=28.17 Aligned_cols=103 Identities=11% Similarity=-0.033 Sum_probs=52.4
Q ss_pred CcEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEecc--CCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECC-
Q psy9769 333 IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGF--NGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNS- 408 (1026)
Q Consensus 333 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~--~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~- 408 (1026)
...++.+|......+.+..-+.+-... ...-+| .|+...-. ...++++|..+.+=..+...+.. .......-+|
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p-~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG~ 252 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIISP-AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS-NSAPAWSPDGR 252 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCcccc-eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC-ccceEECCCCC
Confidence 356888887665555543322221111 112244 44333211 23588999988765555443321 1112222345
Q ss_pred EEEEEeccCCCCCCCEEEEEECCCCcEEEccC
Q psy9769 409 LIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAP 440 (1026)
Q Consensus 409 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 440 (1026)
+|++....++ ...++.+|..++....+..
T Consensus 253 ~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~ 281 (427)
T PRK02889 253 TLAVALSRDG---NSQIYTVNADGSGLRRLTQ 281 (427)
T ss_pred EEEEEEccCC---CceEEEEECCCCCcEECCC
Confidence 4554433332 3689999988877766654
No 429
>KOG2445|consensus
Probab=32.28 E-value=5.5e+02 Score=27.81 Aligned_cols=102 Identities=19% Similarity=0.310 Sum_probs=58.1
Q ss_pred CCCCcEEEcCCCCccccceeeEEE----CCEEEEEeccCCCeEEEeCC----CCeEEeCCC---C--cCCc--ceeEEEE
Q psy9769 341 FKTERWQSVAEMPTRRCRAGLVFL----HEKVYAVGGFNGSLRVYDPS----TNEWSSAPP---M--EARR--STLGVAV 405 (1026)
Q Consensus 341 ~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~yd~~----~~~W~~~~~---~--p~~r--~~~~~~~ 405 (1026)
....+|.....|...|....-+.+ -|-..+.-+.+|.+.+|+.. ...|+.... + |.++ ...+++.
T Consensus 97 ~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cvs 176 (361)
T KOG2445|consen 97 AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVS 176 (361)
T ss_pred cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEe
Confidence 344678887777776665443332 35556666677777777543 356864321 1 2222 2223333
Q ss_pred E-----CCEEEEEeccCCCCCCCE--EEEEECCCCcEEEccCCC
Q psy9769 406 L-----NSLIYAVGGFDGSSGLNS--AEVYDPSTEKWNMIAPMS 442 (1026)
Q Consensus 406 ~-----~~~iyv~GG~~~~~~~~~--v~~yd~~~~~W~~~~~~p 442 (1026)
. ...++++|-.+....+++ ++.|+-..++|..++.+|
T Consensus 177 Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~ 220 (361)
T KOG2445|consen 177 WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP 220 (361)
T ss_pred eccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC
Confidence 3 234777776554444554 555666777999887664
No 430
>KOG0772|consensus
Probab=31.62 E-value=3.6e+02 Score=31.22 Aligned_cols=109 Identities=14% Similarity=0.110 Sum_probs=66.5
Q ss_pred eEEECCEEEEEeccCCCeEEEeCCC-----CeEEeCCCCcCCccee-EEEEECCEEEEEeccCCCCC-CCEEEEEECCCC
Q psy9769 361 LVFLHEKVYAVGGFNGSLRVYDPST-----NEWSSAPPMEARRSTL-GVAVLNSLIYAVGGFDGSSG-LNSAEVYDPSTE 433 (1026)
Q Consensus 361 ~~~~~~~iyv~GG~~~~~~~yd~~~-----~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~~~ 433 (1026)
...++|++.+--|.++++.+||+.. +.|+-++. +-... ++..-+++|.+.|-...+.. ...++.||+.+
T Consensus 371 ~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t---~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t- 446 (641)
T KOG0772|consen 371 SFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT---PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT- 446 (641)
T ss_pred EeccccchhhhccCCCceeeeeccccccchhhhcCCCc---cCCCCccccCCCceEEEecccccCCCCCceEEEEeccc-
Confidence 3445788888888888888888764 34554443 22222 23345788888886654443 34688888654
Q ss_pred cEEEccCCCCCcceeEEEEEC---CEEEEEeCCCceeeEEcCcc
Q psy9769 434 KWNMIAPMSTRRSSVGVGVLN---GCLYAENLDGRILGCVKEIT 474 (1026)
Q Consensus 434 ~W~~~~~~p~~r~~~~~~~~~---~~lyv~GG~~~~~~~~~~~~ 474 (1026)
...+..++.+-.+...+... |.|++--|.|....||+++.
T Consensus 447 -~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 447 -LDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred -eeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEECccc
Confidence 44444444442222223332 67888778888888888663
No 431
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=31.29 E-value=2.6e+02 Score=29.82 Aligned_cols=124 Identities=15% Similarity=0.240 Sum_probs=64.6
Q ss_pred EEEEEECC-CCcEEEcCCCCc-ccc-ceeeEEE-CCEEEEEeccC--CCeEE-EeCC-CCeEEeCC--CCcCCcceeEEE
Q psy9769 335 SVECYDFK-TERWQSVAEMPT-RRC-RAGLVFL-HEKVYAVGGFN--GSLRV-YDPS-TNEWSSAP--PMEARRSTLGVA 404 (1026)
Q Consensus 335 ~~~~yd~~-~~~W~~~~~~p~-~r~-~~~~~~~-~~~iyv~GG~~--~~~~~-yd~~-~~~W~~~~--~~p~~r~~~~~~ 404 (1026)
....|... ..+|+.....+. ... ..+.+.. +|.||++--.. +..+. +... -.+|+... .+|.+.+...++
T Consensus 135 ~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~~~~~~~~~ 214 (275)
T PF13088_consen 135 AFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPNPNSSISLV 214 (275)
T ss_dssp EEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSSCCEEEEEE
T ss_pred eEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCcccCCceEE
Confidence 34445544 556988766532 233 3333333 57888886442 22222 2222 35798754 456666555555
Q ss_pred EE-CCEEEEEeccCCCCCCCEEEEEEC-CCCcEEEccCCCCCc----ceeEEEEE-CCEEEE
Q psy9769 405 VL-NSLIYAVGGFDGSSGLNSAEVYDP-STEKWNMIAPMSTRR----SSVGVGVL-NGCLYA 459 (1026)
Q Consensus 405 ~~-~~~iyv~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~p~~r----~~~~~~~~-~~~lyv 459 (1026)
.+ ++.++++.... ....+-...+.. ...+|.....+.... ...+++.. +++|||
T Consensus 215 ~~~~g~~~~~~~~~-~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 215 RLSDGRLLLVYNNP-DGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECTTSEEEEEEECS-STSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EcCCCCEEEEEECC-CCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 54 67888887732 122222222333 377898665443322 34455555 579986
No 432
>KOG0318|consensus
Probab=30.95 E-value=2e+02 Score=33.25 Aligned_cols=90 Identities=21% Similarity=0.293 Sum_probs=52.9
Q ss_pred CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEE--CCEEEEEeccCCCCCCCEEEEEECCC-----CcEEE
Q psy9769 365 HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL--NSLIYAVGGFDGSSGLNSAEVYDPST-----EKWNM 437 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-----~~W~~ 437 (1026)
++.-.++||.++.+++|.+....-.+...+...|..-+.+.+ ++..++.|-.. ..+-.||..+ +.|..
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-----rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-----RKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-----CcEEEEEcccCceecceeee
Confidence 578889999999999999887664444444445555555555 56666665433 4566776654 44542
Q ss_pred ccCCCCCcceeEEEEECCEEEEEeCC
Q psy9769 438 IAPMSTRRSSVGVGVLNGCLYAENLD 463 (1026)
Q Consensus 438 ~~~~p~~r~~~~~~~~~~~lyv~GG~ 463 (1026)
- .+|-..-+-.-++++...|+-
T Consensus 529 H----takI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 529 H----TAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred e----eeeEEEEEeCCCceEEEeccc
Confidence 1 122222222226666666663
No 433
>KOG2321|consensus
Probab=30.63 E-value=2.1e+02 Score=33.49 Aligned_cols=72 Identities=8% Similarity=-0.060 Sum_probs=41.6
Q ss_pred CCcceeEEEEE--CCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEEeCCCceeeEEcCc
Q psy9769 396 ARRSTLGVAVL--NSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKEI 473 (1026)
Q Consensus 396 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~ 473 (1026)
.|+.+..++.. +-.||+.|- .++|+++|++.++|-..-....+--++....--+.|.++||..+...++++.
T Consensus 132 IP~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred cCcCCccccccCCCccEEEeec------CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 34444444432 334666543 2689999999999954222222222222222235689999988777777754
No 434
>PRK10811 rne ribonuclease E; Reviewed
Probab=30.60 E-value=45 Score=41.59 Aligned_cols=61 Identities=8% Similarity=0.003 Sum_probs=46.5
Q ss_pred cCCceEEeeeecccCC--cceeeccccceeeccCcccccchh-------------hhhhcccccccccceeeeeccccc
Q psy9769 646 VPGMKVIANICQQLPH--GWKAKLKNTQFKAFISPEAMSTAY-------------NAKYLTNKRVDLDCSVLYVCPRHF 709 (1026)
Q Consensus 646 ~~G~~v~~~V~~v~~~--G~~v~~~~~~~~gfi~~~~~~~~~-------------~~~~~~G~~~~~~~~Il~vd~~~~ 709 (1026)
.+|.+..|+|++++++ ++||+++ .+-.||++..+..... ...++.|+++ -+.|..-.-.+|
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG-~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeI--LVQV~KEa~gtK 112 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEV--IVQIDKEERGNK 112 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEec-CCcceEEEhhhccccccccccccccccccccccCCCCEE--EEEEeecccCCC
Confidence 4799999999999997 8999995 6899999877764211 3357789998 777777444433
No 435
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=30.56 E-value=2.2e+02 Score=30.36 Aligned_cols=143 Identities=15% Similarity=0.149 Sum_probs=75.3
Q ss_pred EEEEEECCCCcEEEcCCCCcc--ccceeeEEECCEEEEEeccCCCeEE-EeCCCCeEEeCCCCcCCcceeEEEEECC--E
Q psy9769 335 SVECYDFKTERWQSVAEMPTR--RCRAGLVFLHEKVYAVGGFNGSLRV-YDPSTNEWSSAPPMEARRSTLGVAVLNS--L 409 (1026)
Q Consensus 335 ~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~~~~~~--~ 409 (1026)
.++.=+-....|+.+.+--.+ ..+--+.+.+|...++|-.. +.++ ++.-...|..-.+-...|...-...-.+ -
T Consensus 149 ail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG-s~f~T~~aGqt~~~~~g~~s~~~letmg~adag~~g 227 (339)
T COG4447 149 AILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARG-SFFSTWGAGQTVWLPHGRNSSRRLETMGLADAGSKG 227 (339)
T ss_pred eEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCc-ceEecCCCCccEEeccCCCccchhcccccccCCccc
Confidence 444444456779877543222 22222334455555555433 3332 4555554543332222222211222234 4
Q ss_pred EEEEeccCCCCCCCEEEEEECCCCcEEEcc-CCCCCcceeEE----EEECCEEEEEeCCCceeeEEcCcccEEEeecCCC
Q psy9769 410 IYAVGGFDGSSGLNSAEVYDPSTEKWNMIA-PMSTRRSSVGV----GVLNGCLYAENLDGRILGCVKEITDWGLIIELPN 484 (1026)
Q Consensus 410 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~----~~~~~~lyv~GG~~~~~~~~~~~~~W~~~~~lP~ 484 (1026)
+++.||... -...++..+.|+.++ +....|...+. -...+.+||.|+.+++..--+...+|++....|.
T Consensus 228 ~la~g~qg~------~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~gGnvl~StdgG~t~skd~g~~e 301 (339)
T COG4447 228 LLARGGQGD------QFSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIGGNVLASTDGGTTWSKDGGVEE 301 (339)
T ss_pred eEEEccccc------eeecCCCcccccccccchhcccCCCccccccccCCCCeEEeccCccEEEecCCCeeEeccCChhh
Confidence 777777532 234556678898765 22333333332 2347899999998888777677788987765544
No 436
>KOG0263|consensus
Probab=30.20 E-value=3.1e+02 Score=33.32 Aligned_cols=60 Identities=20% Similarity=0.349 Sum_probs=38.2
Q ss_pred CCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcce-eE-EEEECCEEEEEeccCCCCCCCEEEEEECC
Q psy9769 365 HEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRST-LG-VAVLNSLIYAVGGFDGSSGLNSAEVYDPS 431 (1026)
Q Consensus 365 ~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~-~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 431 (1026)
.|+-.+.|+.++.+-.||..+.. .+..+..-... .+ ....+|.+++.||.+ ++|-.||..
T Consensus 588 ~Gr~LaSg~ed~~I~iWDl~~~~--~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~ 649 (707)
T KOG0263|consen 588 CGRYLASGDEDGLIKIWDLANGS--LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLT 649 (707)
T ss_pred CCceEeecccCCcEEEEEcCCCc--chhhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEch
Confidence 56666777888899999998754 22222211111 12 224589999999976 677777764
No 437
>KOG0308|consensus
Probab=29.94 E-value=1.9e+02 Score=34.31 Aligned_cols=94 Identities=16% Similarity=0.338 Sum_probs=53.3
Q ss_pred EEEEEECCCCc-EEEcCCCCccccceeeEEE---CCEEEEEeccCCCeEEEeCCCCeEE------eC--CCCc-CCcce-
Q psy9769 335 SVECYDFKTER-WQSVAEMPTRRCRAGLVFL---HEKVYAVGGFNGSLRVYDPSTNEWS------SA--PPME-ARRST- 400 (1026)
Q Consensus 335 ~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~yd~~~~~W~------~~--~~~p-~~r~~- 400 (1026)
++-.+++..+. |- +..+...+.+-.+.++ ++.+++-||.+..+.+||..+.+=+ .+ .+++ -++.+
T Consensus 96 TVK~W~~~~~~~~c-~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFC-MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred eEEEeecccCcchh-HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 45556665543 32 1222233333333333 6899999999999999998865321 11 1233 23322
Q ss_pred eEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 401 LGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 401 ~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
++.+.- .+.|+|-||.. ..+..|||.+++
T Consensus 175 YSLA~N~t~t~ivsGgte-----k~lr~wDprt~~ 204 (735)
T KOG0308|consen 175 YSLAMNQTGTIIVSGGTE-----KDLRLWDPRTCK 204 (735)
T ss_pred eeeecCCcceEEEecCcc-----cceEEecccccc
Confidence 222222 45688888865 567789988754
No 438
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=29.74 E-value=2.7e+02 Score=26.32 Aligned_cols=63 Identities=24% Similarity=0.409 Sum_probs=38.1
Q ss_pred CEEEEEeccCCCeEEEeCCCCe---EEeCCCCcCCcceeEEEEE---CCEEEEEeccCCCCCCCEEEEEECCCCc--EEE
Q psy9769 366 EKVYAVGGFNGSLRVYDPSTNE---WSSAPPMEARRSTLGVAVL---NSLIYAVGGFDGSSGLNSAEVYDPSTEK--WNM 437 (1026)
Q Consensus 366 ~~iyv~GG~~~~~~~yd~~~~~---W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~ 437 (1026)
..+.++ |...++..||...|. |+.++ ..-.......+ ...+.++||. .+++-||-+.+. |+.
T Consensus 64 ~D~Lli-Gt~t~llaYDV~~N~d~Fyke~~---DGvn~i~~g~~~~~~~~l~ivGGn------csi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 64 RDCLLI-GTQTSLLAYDVENNSDLFYKEVP---DGVNAIVIGKLGDIPSPLVIVGGN------CSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cCEEEE-eccceEEEEEcccCchhhhhhCc---cceeEEEEEecCCCCCcEEEECce------EEEEEeCCCCcEEEEEe
Confidence 345555 456678899999887 44444 33222222223 4568888884 577788876554 765
Q ss_pred c
Q psy9769 438 I 438 (1026)
Q Consensus 438 ~ 438 (1026)
.
T Consensus 134 t 134 (136)
T PF14781_consen 134 T 134 (136)
T ss_pred c
Confidence 3
No 439
>KOG1517|consensus
Probab=28.71 E-value=8.5e+02 Score=31.25 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccc----eeeEEECCEEEEEeccCCCeEEEeCCC-------Ce
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCR----AGLVFLHEKVYAVGGFNGSLRVYDPST-------NE 387 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~----~~~~~~~~~iyv~GG~~~~~~~yd~~~-------~~ 387 (1026)
.+.+++.|+ .+.+.++|..... .+.++|..-.. .++-.++|.+++.|=.+|++.+||-.. ..
T Consensus 1177 ~G~Ll~tGd-----~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1177 SGHLLVTGD-----VRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred CCeEEecCC-----eeEEEEEecccce--eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 456777765 3577888876643 44566654222 122234678999988899999998543 34
Q ss_pred EEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCc--c--eeEEEEE-CCEEEEEeC
Q psy9769 388 WSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRR--S--SVGVGVL-NGCLYAENL 462 (1026)
Q Consensus 388 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r--~--~~~~~~~-~~~lyv~GG 462 (1026)
|++...-+. --|....-+|.--++.|..+ .+++.+|+....=....+...++ . ..++.++ .-.|+..|+
T Consensus 1250 ~R~h~~~~~--Iv~~slq~~G~~elvSgs~~----G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1250 YREHNDVEP--IVHLSLQRQGLGELVSGSQD----GDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred ecccCCccc--ceeEEeecCCCcceeeeccC----CeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC
Confidence 554433221 22222222233223334322 46888888775222222222222 1 2233444 446788887
Q ss_pred CCceeeEEcCcccEEEeecCCC
Q psy9769 463 DGRILGCVKEITDWGLIIELPN 484 (1026)
Q Consensus 463 ~~~~~~~~~~~~~W~~~~~lP~ 484 (1026)
.+.+.-|+...+.-..+...|.
T Consensus 1324 ~q~ikIy~~~G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1324 AQLIKIYSLSGEQLNIIKYNPG 1345 (1387)
T ss_pred cceEEEEecChhhhcccccCcc
Confidence 6555555554433333333333
No 440
>KOG3545|consensus
Probab=28.34 E-value=7.2e+02 Score=26.16 Aligned_cols=138 Identities=18% Similarity=0.199 Sum_probs=80.0
Q ss_pred CcEEEEEcCCCCCCCcEEEEEEC----CCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCe---EEeC
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDF----KTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE---WSSA 391 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~----~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~---W~~~ 391 (1026)
++++|+..+.. ...+.-|.. ....|...-.+|.+-.+..-++++|.+|--.+....+-.||..+.. |..+
T Consensus 30 ~~r~~~~~~~~---~~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVynGs~yynk~~t~~ivky~l~~~~~~~~~~l 106 (249)
T KOG3545|consen 30 DDRIYVMNYFD---GLMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVYNGSLYYNKAGTRNIIKYDLETRTVAGSAAL 106 (249)
T ss_pred cCceEEecccc---CceEEEeccHHHhhccCcceEEeCCCCccccceEEEcceEEeeccCCcceEEEEeecceeeeeeec
Confidence 56788884432 345555554 3445666666888888889999999999988777788899998843 5555
Q ss_pred CCCcCC---------cceeEEEEECCEEEEEeccCCCCCCCEEEEEECC----CCcEEEccCCCCCcceeEEEEECCEEE
Q psy9769 392 PPMEAR---------RSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPS----TEKWNMIAPMSTRRSSVGVGVLNGCLY 458 (1026)
Q Consensus 392 ~~~p~~---------r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~----~~~W~~~~~~p~~r~~~~~~~~~~~ly 458 (1026)
|.+-.. ....-.++...-+|++=-..++...-.+-..||. ..+|.. .++ ++....+..+=|.||
T Consensus 107 p~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T--~~~-k~~~~~aF~iCGvLY 183 (249)
T KOG3545|consen 107 PYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT--TLP-KRSAGNAFMICGVLY 183 (249)
T ss_pred cccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHHhheeeeecc--ccC-CCCcCceEEEeeeeE
Confidence 532111 0111233444456655322222222233667773 345643 222 233345556667788
Q ss_pred EEeC
Q psy9769 459 AENL 462 (1026)
Q Consensus 459 v~GG 462 (1026)
++-.
T Consensus 184 ~v~S 187 (249)
T KOG3545|consen 184 VVHS 187 (249)
T ss_pred EEec
Confidence 8854
No 441
>KOG0266|consensus
Probab=28.26 E-value=1e+03 Score=27.82 Aligned_cols=139 Identities=13% Similarity=0.131 Sum_probs=70.4
Q ss_pred CcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCCCeEEEeCCCCeE---EeCCCCc
Q psy9769 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEW---SSAPPME 395 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W---~~~~~~p 395 (1026)
.+.+++.|+.+ ..+..+|..+.+-...-..........+..-++..++.|.+++.+.+||..+..= ..+....
T Consensus 257 ~g~~i~Sgs~D----~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~ 332 (456)
T KOG0266|consen 257 DGNLLVSGSDD----GTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAE 332 (456)
T ss_pred CCCEEEEecCC----CcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCC
Confidence 34677887765 4688889888543322111122222223334678888888899999999988762 2333333
Q ss_pred CCcceeEEEEE-CCEEEEEeccCCCCCCCEEEEEECCCCc----EEEccCCCCCcceeEEEEE-CCEEEEEeCCCceee
Q psy9769 396 ARRSTLGVAVL-NSLIYAVGGFDGSSGLNSAEVYDPSTEK----WNMIAPMSTRRSSVGVGVL-NGCLYAENLDGRILG 468 (1026)
Q Consensus 396 ~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~ 468 (1026)
.+. ....+.. .+..|++.+..+ +.+-.||+.... |...... .++....+.. +++..+.|+......
T Consensus 333 ~~~-~~~~~~fsp~~~~ll~~~~d----~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 333 NSA-PVTSVQFSPNGKYLLSASLD----RTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSEDGSVY 404 (456)
T ss_pred CCC-ceeEEEECCCCcEEEEecCC----CeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCCceEE
Confidence 332 2222322 444445444332 345555655332 3222221 1333333323 555556665444333
No 442
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS. This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial
Probab=28.10 E-value=1.6e+02 Score=24.88 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=31.6
Q ss_pred EEEEEEEEEecce--EEEEeCCC-----ceeeEeccccCcccccCcccccccCCEEEEE
Q psy9769 952 LVWGVLKEKMPGG--VRVEFDGD-----ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQ 1003 (1026)
Q Consensus 952 ~v~G~V~~i~~~G--~fV~~~~~-----i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~ 1003 (1026)
.+.|+|.++...| +|+.+-++ +..++..+....+ .-+.++.|+.|.+.
T Consensus 3 ~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~----~~~~l~~gs~V~v~ 57 (82)
T cd04318 3 TVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFK----EILKLSTGSSIRVE 57 (82)
T ss_pred EEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHH----HHhcCCCceEEEEE
Confidence 5789999997765 89999442 7777766533211 11346788887664
No 443
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes.
Probab=27.54 E-value=1.1e+02 Score=27.51 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=30.9
Q ss_pred EEEEEEEEEecce--EEEEeCCC---ceeeEeccccCcccccCcccccccCCEEEEE
Q psy9769 952 LVWGVLKEKMPGG--VRVEFDGD---ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQ 1003 (1026)
Q Consensus 952 ~v~G~V~~i~~~G--~fV~~~~~---i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~ 1003 (1026)
.+.|+|.++.+.| +|+.+-++ +..++..++.+.+... .-..+..|+.|.+.
T Consensus 16 ~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~-~~~~l~~es~V~V~ 71 (108)
T cd04316 16 TVAGWVHEIRDLGGIKFVILRDREGIVQVTAPKKKVDKELFK-TVRKLSRESVISVT 71 (108)
T ss_pred EEEEEEEeeeccCCeEEEEEecCCeeEEEEEeCCCCCHHHHH-HHhCCCCcCEEEEE
Confidence 4689999998888 89999665 5556654433221111 11235677776653
No 444
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.98 E-value=8.4e+02 Score=26.48 Aligned_cols=123 Identities=14% Similarity=0.184 Sum_probs=72.3
Q ss_pred EEcCCCCcc--ccceeeEEECCEEEEEeccC----------------------CCeEEEeCCCCe----EEeCCCCcCCc
Q psy9769 347 QSVAEMPTR--RCRAGLVFLHEKVYAVGGFN----------------------GSLRVYDPSTNE----WSSAPPMEARR 398 (1026)
Q Consensus 347 ~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~----------------------~~~~~yd~~~~~----W~~~~~~p~~r 398 (1026)
+.+.+.|.. -.+.++..+++.|| |||+- +.++.||..+++ |++--. .++
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih--~~~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH--DKT 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC--Ccc
Confidence 445554532 34566777888887 57752 136779998887 765332 233
Q ss_pred ceeEEE---E---ECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEE----EEeCCCceee
Q psy9769 399 STLGVA---V---LNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY----AENLDGRILG 468 (1026)
Q Consensus 399 ~~~~~~---~---~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ly----v~GG~~~~~~ 468 (1026)
..++=+ . +++.||+.-+ + ....--+|..|.+++.=+.+.+-|.+.. +..++...| ..+|...+.-
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~-D-Gh~nLGvy~ldr~~g~~~~L~~~ps~KG---~~~~D~a~F~i~~~~~g~~~i~~ 177 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARA-D-GHANLGVYSLDRRTGKAEKLSSNPSLKG---TLVHDYACFGINNFHKGVSGIHC 177 (339)
T ss_pred ccccchhheeeCCCcCEEEEEec-C-CcceeeeEEEcccCCceeeccCCCCcCc---eEeeeeEEEeccccccCCceEEE
Confidence 333322 2 3678888743 2 2223568888999998888877666533 122222222 2345566677
Q ss_pred EEcCcccEE
Q psy9769 469 CVKEITDWG 477 (1026)
Q Consensus 469 ~~~~~~~W~ 477 (1026)
+|..+.+|.
T Consensus 178 ~Dli~~~~~ 186 (339)
T PF09910_consen 178 LDLISGKWV 186 (339)
T ss_pred EEccCCeEE
Confidence 777788883
No 445
>KOG0285|consensus
Probab=26.85 E-value=6.2e+02 Score=28.03 Aligned_cols=134 Identities=14% Similarity=0.238 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEE---ECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCC
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVF---LHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEAR 397 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~ 397 (1026)
.+++.||.+ ..+..+|..+.. ++-.|...+.-.+.+. .+..|| .|-.++++..||...++= ...-....
T Consensus 248 dvl~t~grD----st~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvi-t~S~D~tvrlWDl~agkt-~~tlt~hk 319 (460)
T KOG0285|consen 248 DVLVTGGRD----STIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQVI-TGSHDSTVRLWDLRAGKT-MITLTHHK 319 (460)
T ss_pred eeEEecCCc----ceEEEeeecccc--eEEEecCCCCcceeEEeecCCCceE-EecCCceEEEeeeccCce-eEeeeccc
Confidence 456666654 245566666543 2222332222222222 355664 566788888899877642 11111222
Q ss_pred cceeEEEEECCE--EEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcc-eeEEEEECCEEEEEeCCCceeeEEc
Q psy9769 398 RSTLGVAVLNSL--IYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRS-SVGVGVLNGCLYAENLDGRILGCVK 471 (1026)
Q Consensus 398 r~~~~~~~~~~~--iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~-~~~~~~~~~~lyv~GG~~~~~~~~~ 471 (1026)
+..-++ +++-+ +|+-++. +.+.+++.-.+.. +.++..... .-++.+..+.+|+.||.++..++++
T Consensus 320 ksvral-~lhP~e~~fASas~------dnik~w~~p~g~f--~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 320 KSVRAL-CLHPKENLFASASP------DNIKQWKLPEGEF--LQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred ceeeEE-ecCCchhhhhccCC------ccceeccCCccch--hhccccccceeeeeeeccCceEEEcCCceEEEEEe
Confidence 222222 23333 3333332 3344444332221 122221111 2244556778999999888777655
No 446
>KOG0263|consensus
Probab=26.75 E-value=3.9e+02 Score=32.52 Aligned_cols=101 Identities=14% Similarity=0.143 Sum_probs=51.8
Q ss_pred eEEECCEEEEEeccC-CCeEEEeCCCCeEEeCCCCcCCcceeEEEE-ECCEEEEEeccCCCCCCCEEEEEECCCCcEEEc
Q psy9769 361 LVFLHEKVYAVGGFN-GSLRVYDPSTNEWSSAPPMEARRSTLGVAV-LNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMI 438 (1026)
Q Consensus 361 ~~~~~~~iyv~GG~~-~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 438 (1026)
+.++-+.-|++.|.. .++..||..+..-.++=.-. .+.-.+.+. .+|+-.+.|+.+ ..+-.||..+++- +
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~LaSg~ed-----~~I~iWDl~~~~~--v 612 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLASGDED-----GLIKIWDLANGSL--V 612 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEeecccC-----CcEEEEEcCCCcc--h
Confidence 444557777777643 36777888776544332111 111122222 256655556554 3577888766432 1
Q ss_pred cCCCCCcceeEE--EEECCEEEEEeCCCceeeE
Q psy9769 439 APMSTRRSSVGV--GVLNGCLYAENLDGRILGC 469 (1026)
Q Consensus 439 ~~~p~~r~~~~~--~~~~~~lyv~GG~~~~~~~ 469 (1026)
..+-.-...-.. ...+|.+.+.||.++....
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l 645 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL 645 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence 111111111111 2348889999987765554
No 447
>KOG0646|consensus
Probab=26.42 E-value=4.7e+02 Score=29.87 Aligned_cols=126 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred eeeEEECCEEEEEec-cCCCeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEE
Q psy9769 359 AGLVFLHEKVYAVGG-FNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNM 437 (1026)
Q Consensus 359 ~~~~~~~~~iyv~GG-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 437 (1026)
++.+..+.--|++|| ..+++|+|...++.--.+-.-...--..--..-||..++.||.+ ..|..|++ +.--..
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskD-----g~V~vW~l-~~lv~a 158 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKD-----GAVLVWLL-TDLVSA 158 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCC-----ccEEEEEE-Eeeccc
Q ss_pred ccC-CCCCcc---eeEEEEE---------CCEEEEEeCCCceeeEEcCcccEEEeecCCCcccceE
Q psy9769 438 IAP-MSTRRS---SVGVGVL---------NGCLYAENLDGRILGCVKEITDWGLIIELPNFLSASV 490 (1026)
Q Consensus 438 ~~~-~p~~r~---~~~~~~~---------~~~lyv~GG~~~~~~~~~~~~~W~~~~~lP~~~~g~~ 490 (1026)
-.+ -+.|++ .|+..+. +.++|-.+-+..+.-|+...+.-=.-..+|..+.+.+
T Consensus 159 ~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~ 224 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVA 224 (476)
T ss_pred ccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEE
No 448
>KOG0639|consensus
Probab=26.15 E-value=2e+02 Score=32.92 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=62.8
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCc--cccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCc
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPT--RRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPME 395 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p 395 (1026)
.++.-.++||. ..++-++|..+-+=+..+.++. +.++.-++..+.++....-.+|.+.+||+..++- +..++
T Consensus 475 pdgrtLivGGe----astlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~--Vrqfq 548 (705)
T KOG0639|consen 475 PDGRTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL--VRQFQ 548 (705)
T ss_pred CCCceEEeccc----cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee--eeccc
Confidence 35566777874 4567777877766555555655 4444444555667766666678899999988753 33333
Q ss_pred CCcceeEEEEE--CCEEEEEeccCCCCCCCEEEEEECCCC
Q psy9769 396 ARRSTLGVAVL--NSLIYAVGGFDGSSGLNSAEVYDPSTE 433 (1026)
Q Consensus 396 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 433 (1026)
----+.++..+ +|.=.-.||.+ +.|-+||..+.
T Consensus 549 GhtDGascIdis~dGtklWTGGlD-----ntvRcWDlreg 583 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLD-----NTVRCWDLREG 583 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCc-----cceeehhhhhh
Confidence 22223334333 34433357765 56778887653
No 449
>KOG4078|consensus
Probab=26.14 E-value=89 Score=28.98 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=40.9
Q ss_pred ccccCcccccccccccccceeeeecccceeeeeec-----cccccCceEEEEEeeeeec
Q psy9769 561 TLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKY-----DSVILGQIVTCMISKIKVA 614 (1026)
Q Consensus 561 ~l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~-----~~~~~G~~v~~~v~~~~~~ 614 (1026)
.-.+|.+|-|+|..+....+.+|||.+ +++.... +.|..|-.|..+++..+-.
T Consensus 79 g~a~gklV~GkIfhiV~~DlYIDFG~K-FhcVC~rP~~n~e~Y~~GaRVrlRl~DlELs 136 (173)
T KOG4078|consen 79 GDAKGKLVIGKIFHIVEEDLYIDFGGK-FHCVCKRPALNGEAYQKGARVRLRLIDLELS 136 (173)
T ss_pred cCcCCcEEEeeeeeeeccceEEecCCe-EEEEEcCcCcCHHHhhcCceEEEEEcChhHh
Confidence 345799999999999999999999875 4444432 4488999998888776543
No 450
>KOG0308|consensus
Probab=25.35 E-value=9.9e+02 Score=28.75 Aligned_cols=66 Identities=20% Similarity=0.315 Sum_probs=40.3
Q ss_pred CCcEEEEEcCCCCCCCcEEEEEECCCCcE------E--EcCCCC-ccccc-eeeEEE-CCEEEEEeccCCCeEEEeCCCC
Q psy9769 318 VPKVMLVVGGQAPKAIRSVECYDFKTERW------Q--SVAEMP-TRRCR-AGLVFL-HEKVYAVGGFNGSLRVYDPSTN 386 (1026)
Q Consensus 318 ~~~~i~v~GG~~~~~~~~~~~yd~~~~~W------~--~~~~~p-~~r~~-~~~~~~-~~~iyv~GG~~~~~~~yd~~~~ 386 (1026)
.++.+++.||.+. .++.||..+..= . +..+++ .++.. ++.+.- .+.++|.||..+.+.+|||.+.
T Consensus 128 k~~~lvaSgGLD~----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~ 203 (735)
T KOG0308|consen 128 KNNELVASGGLDR----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTC 203 (735)
T ss_pred cCceeEEecCCCc----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccc
Confidence 4567888999764 455555543311 1 122334 33333 233322 3579999999999999999986
Q ss_pred e
Q psy9769 387 E 387 (1026)
Q Consensus 387 ~ 387 (1026)
.
T Consensus 204 ~ 204 (735)
T KOG0308|consen 204 K 204 (735)
T ss_pred c
Confidence 4
No 451
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.19 E-value=9.4e+02 Score=26.99 Aligned_cols=117 Identities=13% Similarity=0.010 Sum_probs=60.4
Q ss_pred EEEEEecc----CCCeEEEeCCCCeEEeCCCCcCCcceeEEEE-ECCEEEEEeccC----CCCCCCEEEEEECCCCcEE-
Q psy9769 367 KVYAVGGF----NGSLRVYDPSTNEWSSAPPMEARRSTLGVAV-LNSLIYAVGGFD----GSSGLNSAEVYDPSTEKWN- 436 (1026)
Q Consensus 367 ~iyv~GG~----~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~----~~~~~~~v~~yd~~~~~W~- 436 (1026)
.+||.-.. .+++.++|..+.+ .+...+..+..+.... -+..||++-.+- .......+..||+.+.+=.
T Consensus 14 ~v~V~d~~~~~~~~~v~ViD~~~~~--v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 14 RVYVLDPGHFAATTQVYTIDGEAGR--VLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred EEEEECCcccccCceEEEEECCCCE--EEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 45665443 2678888987754 3333333332223332 355799987631 1223688999999887754
Q ss_pred EccCCCCCcce-----eEEEE-ECC-EEEEEeC--CCceeeEEcCcccEEEeecCCCc
Q psy9769 437 MIAPMSTRRSS-----VGVGV-LNG-CLYAENL--DGRILGCVKEITDWGLIIELPNF 485 (1026)
Q Consensus 437 ~~~~~p~~r~~-----~~~~~-~~~-~lyv~GG--~~~~~~~~~~~~~W~~~~~lP~~ 485 (1026)
.++.-+.||.. ...+. -+| .|||..= .+.+...|..+..--...+.|.+
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~ 149 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC 149 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC
Confidence 23322344522 12222 244 6888752 34445555554443333334443
No 452
>KOG0647|consensus
Probab=25.14 E-value=7.6e+02 Score=26.76 Aligned_cols=130 Identities=12% Similarity=0.153 Sum_probs=66.3
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCcc-ccceeeEEECCEEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcc
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTR-RCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRS 399 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~ 399 (1026)
.-...||.+ ..+-.||..+++-.+++.--.| |..|-+-..+-.+.+.|-++.++..||+.... .+..+..|-.
T Consensus 85 skVf~g~~D----k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t~~LPeR 158 (347)
T KOG0647|consen 85 SKVFSGGCD----KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVATLQLPER 158 (347)
T ss_pred ceEEeeccC----CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeeeeeccce
Confidence 334445543 4677899999987777542222 22222222233466778888888889987543 3333332222
Q ss_pred eeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCcE--EEccCCCCCcceeEE-EEECCEEEEEeCC
Q psy9769 400 TLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW--NMIAPMSTRRSSVGV-GVLNGCLYAENLD 463 (1026)
Q Consensus 400 ~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~-~~~~~~lyv~GG~ 463 (1026)
.+++-+....+.|.-+ -+.+-.|+++...= ..+.+ |..-..-++ +.-++..|.+|+.
T Consensus 159 vYa~Dv~~pm~vVata------~r~i~vynL~n~~te~k~~~S-pLk~Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 159 VYAADVLYPMAVVATA------ERHIAVYNLENPPTEFKRIES-PLKWQTRCVACFQDKDGFALGSI 218 (347)
T ss_pred eeehhccCceeEEEec------CCcEEEEEcCCCcchhhhhcC-cccceeeEEEEEecCCceEeeee
Confidence 3333333333333211 15677888865432 22221 111111222 3336677899874
No 453
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=24.98 E-value=2.6e+02 Score=21.90 Aligned_cols=49 Identities=16% Similarity=0.043 Sum_probs=29.7
Q ss_pred EEEEEEecceEEEEeCC-CceeeEeccccCcccccCcccccccCCEEEEEEEEEeCCeee
Q psy9769 955 GVLKEKMPGGVRVEFDG-DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDGELL 1013 (1026)
Q Consensus 955 G~V~~i~~~G~fV~~~~-~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~ 1013 (1026)
|++.-..+.-.||...+ +-+=|||..+|.. -.-||+|.++|+. ......
T Consensus 1 G~~~~~~~GfGFv~~~~~~~DifIp~~~l~~---------A~~gD~V~v~i~~-~~~~~~ 50 (58)
T PF08206_consen 1 GTLKIHPKGFGFVIPDDGGEDIFIPPRNLNG---------AMDGDKVLVRITP-PSRGKR 50 (58)
T ss_dssp EEEEE-SSS-EEEEECT-TEEEEE-HHHHTT---------S-TT-EEEEEEEE-SSSEEE
T ss_pred CEEEEEcCCCEEEEECCCCCCEEECHHHHCC---------CCCCCEEEEEEec-CCCCCC
Confidence 45544434447888776 6777888887732 3579999999998 444433
No 454
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=24.96 E-value=9.8e+02 Score=26.58 Aligned_cols=155 Identities=13% Similarity=0.106 Sum_probs=80.5
Q ss_pred CcEEEEEcCCCCCCCcEEE--EEECCCCcEEEcCCCCccccceeeEEE---CCEEEEEeccCCCeEEEeCCCCe-EEeC-
Q psy9769 319 PKVMLVVGGQAPKAIRSVE--CYDFKTERWQSVAEMPTRRCRAGLVFL---HEKVYAVGGFNGSLRVYDPSTNE-WSSA- 391 (1026)
Q Consensus 319 ~~~i~v~GG~~~~~~~~~~--~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~yd~~~~~-W~~~- 391 (1026)
++.+|+..... .....+. ..+..+.+.+.+...+......+.+.+ +..||+.--..+.+.+|+...+. =...
T Consensus 48 ~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 48 GRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp SSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred CCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 56788886643 1223444 455555688887766643344444444 45788776556788888877642 1111
Q ss_pred --------CCC---cCCcceeEEEEE-C-CEEEEEeccCCCCCCCEEEEEECCCCc--EEEcc--CCCCCcceeEEEEE-
Q psy9769 392 --------PPM---EARRSTLGVAVL-N-SLIYAVGGFDGSSGLNSAEVYDPSTEK--WNMIA--PMSTRRSSVGVGVL- 453 (1026)
Q Consensus 392 --------~~~---p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~--~~p~~r~~~~~~~~- 453 (1026)
.+- ...-..|.+... + ..+|+..= ..+.++.|+...+. ..... .+|..-....++..
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred eecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 111 122223454444 3 46777631 23788888887665 65433 22322222233333
Q ss_pred -CCEEEEEeCCC-ceeeEEc--CcccEEEe
Q psy9769 454 -NGCLYAENLDG-RILGCVK--EITDWGLI 479 (1026)
Q Consensus 454 -~~~lyv~GG~~-~~~~~~~--~~~~W~~~ 479 (1026)
+..+||+.-.. .+..|+. ....|+.+
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 35899998643 3444433 34455443
No 455
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=23.88 E-value=1.2e+02 Score=24.32 Aligned_cols=56 Identities=7% Similarity=0.023 Sum_probs=38.0
Q ss_pred EEEEEEEEecceEEEEeCC--CceeeEeccccCcccccCcccccccCCEEEEEEEEEeC
Q psy9769 953 VWGVLKEKMPGGVRVEFDG--DISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYED 1009 (1026)
Q Consensus 953 v~G~V~~i~~~G~fV~~~~--~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~ 1009 (1026)
.++.|--+.+.-+.|.+.+ .+..+=-.++|.+.+.-+ ++.+++||.+.+.+...+.
T Consensus 4 htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~-seklkvG~~l~v~lk~~~~ 61 (69)
T cd05701 4 HTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFD-SEKLSVGQCLDVTLKDPNC 61 (69)
T ss_pred cchhhhhhhhceEEEEeeccccEEEEEchhhcccccccc-ceeeeccceEEEEEecCcc
Confidence 3445555655567788865 566665567776655443 4679999999998876654
No 456
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=23.56 E-value=73 Score=24.75 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.1
Q ss_pred cccccccCCEEEEEEEEEeCCeeeec
Q psy9769 990 VYTRFVIDTVIVCQILKYEDGELLLT 1015 (1026)
Q Consensus 990 ~~~~~~~G~~V~~~Vl~vd~~~~~~~ 1015 (1026)
+.+.+.+|+.++++|++++.+..+|-
T Consensus 8 ~gE~I~Ig~~I~I~Vl~i~~~~Vklg 33 (54)
T PF02599_consen 8 VGESIVIGDDIEITVLEISGGQVKLG 33 (54)
T ss_dssp TT-EEEETTTEEEEEEEEETTEEEEE
T ss_pred CCCEEEECCCEEEEEEEEcCCEEEEE
Confidence 55678899999999999999999883
No 457
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=22.69 E-value=7e+02 Score=27.45 Aligned_cols=130 Identities=17% Similarity=0.225 Sum_probs=60.6
Q ss_pred cceeeEEECCEEEEEec-cCC-------CeEEE--eCCCCeEEeCCCCcCCcc---------eeEEEEE-CCEEE-EEec
Q psy9769 357 CRAGLVFLHEKVYAVGG-FNG-------SLRVY--DPSTNEWSSAPPMEARRS---------TLGVAVL-NSLIY-AVGG 415 (1026)
Q Consensus 357 ~~~~~~~~~~~iyv~GG-~~~-------~~~~y--d~~~~~W~~~~~~p~~r~---------~~~~~~~-~~~iy-v~GG 415 (1026)
..+++++-++.||++=| ++. .+..+ +....+|....+++..-. +.+.+.. +|.|. =+-+
T Consensus 61 ~rPTtvvkgn~IymLvG~y~~~~~~~~~~llLvks~~~g~~W~~~~~l~~~~~~~~~~figgGGSGV~m~dGTLVFPv~a 140 (310)
T PF13859_consen 61 SRPTTVVKGNKIYMLVGSYSRSAGADDWGLLLVKSTDGGIKWGDTKSLPSTSFQSWKQFIGGGGSGVVMEDGTLVFPVQA 140 (310)
T ss_dssp EEEEEEEETTEEEEEEEEESS--SSTTEEEEEEEEESSSSEE---EE-GGGS-EEEEEEEE-SEE-EE-TTS-EEEEEEE
T ss_pred ceeeeeecceeEEEEEEEEeccccccccceeeeeccCCcceeeecccCCchhccccceeecCCCCceEEcCCCEEEEEee
Confidence 35677788999998865 332 12223 223346977655443211 1111122 23221 1122
Q ss_pred cCCCCC-CCEEEEEECC-CCcEEEccCCCCC-cceeEEEEE-CCEEEEEeC----CCceeeEEcCcccEEE-eecCCCcc
Q psy9769 416 FDGSSG-LNSAEVYDPS-TEKWNMIAPMSTR-RSSVGVGVL-NGCLYAENL----DGRILGCVKEITDWGL-IIELPNFL 486 (1026)
Q Consensus 416 ~~~~~~-~~~v~~yd~~-~~~W~~~~~~p~~-r~~~~~~~~-~~~lyv~GG----~~~~~~~~~~~~~W~~-~~~lP~~~ 486 (1026)
...... .-++-.|... ...|+.-..++.. ...++++.. +++|.++.- .-++++-.+..++|+. +.+||+-+
T Consensus 141 ~~~~~~~~~SlIiYS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~g~rrVYeS~DmG~tWtea~gtlsrVw 220 (310)
T PF13859_consen 141 TKKNGDGTVSLIIYSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDDGRRRVYESGDMGTTWTEALGTLSRVW 220 (310)
T ss_dssp EETT---EEEEEEEESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TTS---EEEESSTTSS-EE-TTTTTT--
T ss_pred eccCccceEEEEEEECCCccceEeccccCCCCcceEEEEeccCCeeEEEEecccceEEEEEEcccceehhhccCccceee
Confidence 222222 3567778776 7789987777644 446677778 889998853 2233444455688988 56788744
No 458
>KOG0315|consensus
Probab=22.68 E-value=3.8e+02 Score=28.07 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=52.9
Q ss_pred EEEEEeccCCCeEEEeCCCCeEEeCCCCcCCcceeE--EEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCC
Q psy9769 367 KVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLG--VAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTR 444 (1026)
Q Consensus 367 ~iyv~GG~~~~~~~yd~~~~~W~~~~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 444 (1026)
-|.+..|++.++..+...|+..... ++.+-+... ...-+++..+.+|. ..|-.||..++.=..+...-.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT--iqh~dsqVNrLeiTpdk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h 82 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT--IQHPDSQVNRLEITPDKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGH 82 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE--EecCccceeeEEEcCCcchhhhccC------CeeEEEEccCCCCCceeEEecc
Confidence 3666778887777777777765432 222222221 12235566666664 4677899876543333332233
Q ss_pred cceeEEE--EECCEEEEEeCCCceee
Q psy9769 445 RSSVGVG--VLNGCLYAENLDGRILG 468 (1026)
Q Consensus 445 r~~~~~~--~~~~~lyv~GG~~~~~~ 468 (1026)
+.+-+++ ..+|+....||.++...
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~k 108 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVK 108 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEE
Confidence 3444444 34888888888655433
No 459
>KOG3881|consensus
Probab=22.48 E-value=1.1e+03 Score=26.40 Aligned_cols=106 Identities=18% Similarity=0.325 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCCCCcEEEEEECC--CCcEEEcCC------CCccccceeeEEECC---EEEEEeccCCCeEEEeCCCCeE
Q psy9769 320 KVMLVVGGQAPKAIRSVECYDFK--TERWQSVAE------MPTRRCRAGLVFLHE---KVYAVGGFNGSLRVYDPSTNEW 388 (1026)
Q Consensus 320 ~~i~v~GG~~~~~~~~~~~yd~~--~~~W~~~~~------~p~~r~~~~~~~~~~---~iyv~GG~~~~~~~yd~~~~~W 388 (1026)
..|+.+||..+ .+.+..||.. ...|+.... |-.|.+...+..+.+ +-++.+-..+.+..||+..+.
T Consensus 161 p~Iva~GGke~--~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR- 237 (412)
T KOG3881|consen 161 PYIVATGGKEN--INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR- 237 (412)
T ss_pred CceEecCchhc--ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-
Confidence 46888899643 4555666654 456765422 223445555555544 555555555688899998654
Q ss_pred EeCCC---CcCCcceeEEEEECCEEEEEeccCCCCCCCEEEEEECCCCc
Q psy9769 389 SSAPP---MEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434 (1026)
Q Consensus 389 ~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 434 (1026)
+++.. +..+-++.+...-++.||+ |-. ...+-.||..++.
T Consensus 238 RPV~~fd~~E~~is~~~l~p~gn~Iy~-gn~-----~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 238 RPVAQFDFLENPISSTGLTPSGNFIYT-GNT-----KGQLAKFDLRGGK 280 (412)
T ss_pred cceeEeccccCcceeeeecCCCcEEEE-ecc-----cchhheecccCce
Confidence 33333 3333333333333445554 322 2456678876654
No 460
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=22.37 E-value=1.3e+02 Score=28.27 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=29.0
Q ss_pred cEEEEEEEEEe--cceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEE
Q psy9769 951 RLVWGVLKEKM--PGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQ 1003 (1026)
Q Consensus 951 ~~v~G~V~~i~--~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~ 1003 (1026)
.-+.|++.... .....|+|+++. --+...++ ... -+++||.|++.
T Consensus 23 ~yYPa~~~~~~~~~~~~~V~Fedg~-~~i~~~dv-----~~L--DlRIGD~Vkv~ 69 (131)
T PF08605_consen 23 KYYPATCVGSGVDRDRSLVRFEDGT-YEIKNEDV-----KYL--DLRIGDTVKVD 69 (131)
T ss_pred eEeeEEEEeecCCCCeEEEEEecCc-eEeCcccE-----eee--eeecCCEEEEC
Confidence 34455555543 334999999987 66665555 112 27899999864
No 461
>COG3269 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]
Probab=22.04 E-value=4.4e+02 Score=21.95 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=32.3
Q ss_pred CCCcEEEEEEEEEecceEEEEeCCCceeeEeccccCcccccCcccccccCCEEEEEEEEEeCC
Q psy9769 948 KPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFVIDTVIVCQILKYEDG 1010 (1026)
Q Consensus 948 ~~G~~v~G~V~~i~~~G~fV~~~~~i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~Vl~vd~~ 1010 (1026)
..|++++-.|..+.+.|==+. .++||+=+ +.+ -++||+|+.+|.+|-+.
T Consensus 14 eeGe~y~V~I~d~g~~GDGia---rveGfvVF-------Vp~----a~~Gd~V~vkI~~v~~~ 62 (73)
T COG3269 14 EEGETYEVEIEDVGDQGDGIA---RVEGFVVF-------VPG----AEVGDEVKVKITKVKPN 62 (73)
T ss_pred ccCCEEEEEEEEeccCCCceE---EEEEEEEE-------eCC----CCCCCeeeEEEEEeecc
Confidence 459999999999988771111 12354332 112 36999999999988653
No 462
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=21.50 E-value=68 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.149 Sum_probs=19.8
Q ss_pred CEEEEEEEEEeCCeeeechhhhh
Q psy9769 998 TVIVCQILKYEDGELLLTEADEK 1020 (1026)
Q Consensus 998 ~~V~~~Vl~vd~~~~~~~~~~~~ 1020 (1026)
+.|+.+|.+||+..+.||+.|-|
T Consensus 3 ~~veG~I~~id~~~~titLdDGk 25 (61)
T PF07076_consen 3 ADVEGTIKSIDPETMTITLDDGK 25 (61)
T ss_pred ccceEEEEEEcCCceEEEecCCC
Confidence 46899999999999999977654
No 463
>KOG1523|consensus
Probab=20.98 E-value=8.5e+02 Score=26.63 Aligned_cols=98 Identities=15% Similarity=0.244 Sum_probs=57.2
Q ss_pred CcEEEEEECCCCc-EEEcCCCCccccceeeEE---ECCEEEEEeccCCCeEEEeC-CCCeEEeCCCCc-CCcceeEEEEE
Q psy9769 333 IRSVECYDFKTER-WQSVAEMPTRRCRAGLVF---LHEKVYAVGGFNGSLRVYDP-STNEWSSAPPME-ARRSTLGVAVL 406 (1026)
Q Consensus 333 ~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~yd~-~~~~W~~~~~~p-~~r~~~~~~~~ 406 (1026)
.+++.+|....+. |.....+...-..-..+- ..++| +-++.+..-|+|.. ...+|.+..-+. ..|+. .++..
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~drnayVw~~~~~~~WkptlvLlRiNrAA-t~V~W 108 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAA-TCVKW 108 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCCCCccccccCCCCeeccceeEEEeccce-eeEee
Confidence 4588999988888 988765443211111111 23455 56677777788877 788998765433 33332 22222
Q ss_pred --CCEEEEEeccCCCCCCCEEEEEECCCCcE
Q psy9769 407 --NSLIYAVGGFDGSSGLNSAEVYDPSTEKW 435 (1026)
Q Consensus 407 --~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 435 (1026)
++..|++|+. ..+-+|..|.-+.+=|
T Consensus 109 sP~enkFAVgSg---ar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 109 SPKENKFAVGSG---ARLISVCYYEQENDWW 136 (361)
T ss_pred cCcCceEEeccC---ccEEEEEEEeccccee
Confidence 5566777653 2346777776554444
No 464
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=20.81 E-value=9.8e+02 Score=26.63 Aligned_cols=139 Identities=15% Similarity=0.087 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCCCcEEEEEECCCCcEEEcCCCCccccceeeEEE-CCEEEEEecc---------CCCeEEEeCCCCe--E
Q psy9769 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL-HEKVYAVGGF---------NGSLRVYDPSTNE--W 388 (1026)
Q Consensus 321 ~i~v~GG~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~---------~~~~~~yd~~~~~--W 388 (1026)
++||.-.........++.||..+++- +..++.+-..+.+..- +..+|+..=+ +.-+..||+.|-+ |
T Consensus 4 rvyV~D~~~~~~~~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 4 RVYVQDPVFFHMTSRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp EEEEEE-GGGGSSEEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEECCccccccceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 45555432112235788888877763 4444444444433333 3477776432 1246789999875 4
Q ss_pred Ee-CCCCcCCcce------eEEEEEC-CEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEECCEEEEE
Q psy9769 389 SS-APPMEARRST------LGVAVLN-SLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAE 460 (1026)
Q Consensus 389 ~~-~~~~p~~r~~------~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~ 460 (1026)
+. +|+- +|.. .....-+ ..+||+= -....+|-+-|++.++-.. .++.|-|.+.--.-++..+.+
T Consensus 82 EI~iP~k--~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~--ei~~PGC~~iyP~~~~~F~~l 153 (342)
T PF06433_consen 82 EIEIPPK--PRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVG--EIDTPGCWLIYPSGNRGFSML 153 (342)
T ss_dssp EEEETTS---B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEE--EEEGTSEEEEEEEETTEEEEE
T ss_pred eEecCCc--chheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceee--eecCCCEEEEEecCCCceEEE
Confidence 32 3321 1331 1222223 4566652 2234789999999888743 344454444333446777788
Q ss_pred eCCCceeeE
Q psy9769 461 NLDGRILGC 469 (1026)
Q Consensus 461 GG~~~~~~~ 469 (1026)
.|.|.+..+
T Consensus 154 C~DGsl~~v 162 (342)
T PF06433_consen 154 CGDGSLLTV 162 (342)
T ss_dssp ETTSCEEEE
T ss_pred ecCCceEEE
Confidence 877766554
No 465
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=20.77 E-value=91 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=28.1
Q ss_pred CCcchhhHHHhhhhcCchhHHHHHHhhhhhh
Q psy9769 163 HPTNCLGIRAFADLHSCLDLLSTAENYIELH 193 (1026)
Q Consensus 163 ~~~n~~~~~~~a~~~~~~~L~~~~~~~i~~~ 193 (1026)
+.+++..++.+|..++++.|...|..++.++
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 4788999999999999999999999999775
No 466
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose.
Probab=20.60 E-value=1.9e+02 Score=25.70 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=29.3
Q ss_pred EEEEEEEEEecce--EEEEeCCC---ceeeEeccccCcccccCcccccccCCEEEEE
Q psy9769 952 LVWGVLKEKMPGG--VRVEFDGD---ISGVFPTSAMSQATRTLVYTRFVIDTVIVCQ 1003 (1026)
Q Consensus 952 ~v~G~V~~i~~~G--~fV~~~~~---i~Gl~~~~~ls~~~~~~~~~~~~~G~~V~~~ 1003 (1026)
.+.|+|.++...| +|+.+-++ +.-++... .+++..... ..+..|+.|.+.
T Consensus 3 ~v~Gwv~~~R~~gk~~Fi~lrD~~g~iQ~v~~~~-~~~~~~~~~-~~l~~~s~v~V~ 57 (103)
T cd04319 3 TLAGWVYRKREVGKKAFIVLRDSTGIVQAVFSKD-LNEEAYREA-KKVGIESSVIVE 57 (103)
T ss_pred EEEEEEEeEEcCCCeEEEEEecCCeeEEEEEeCC-CCHHHHHHH-hCCCCCCEEEEE
Confidence 5789999998877 99999654 44444433 211111111 235677776553
No 467
>KOG1004|consensus
Probab=20.33 E-value=1.3e+02 Score=30.37 Aligned_cols=52 Identities=19% Similarity=0.269 Sum_probs=41.6
Q ss_pred cccCcccccccccccccceeeeecccceeeeeec-----------cccccCceEEEEEeeeeec
Q psy9769 562 LETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKY-----------DSVILGQIVTCMISKIKVA 614 (1026)
Q Consensus 562 l~~G~~v~g~V~sv~d~g~~v~~G~~~~~gf~~~-----------~~~~~G~~v~~~v~~~~~~ 614 (1026)
..+|+.|-|.|++...++|-||+|. ..-|-+|. .++++|+.+.|+|..-+++
T Consensus 63 P~~~D~VIGiV~~~~gd~ykVDigg-~~~a~L~~laFe~AtkrNrPnl~vGdliyakv~~a~~~ 125 (230)
T KOG1004|consen 63 PVKGDHVIGIVTSKSGDIYKVDIGG-SEPASLSYLAFEGATKRNRPNLQVGDLIYAKVVDANKD 125 (230)
T ss_pred CCCCCEEEEEEEeccCceEEEecCC-CCeeeeeeccccCccccCCCccccccEEEEEEEecCCC
Confidence 3568999999999999999999986 33555553 2399999999999877654
No 468
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=20.33 E-value=1.2e+03 Score=25.70 Aligned_cols=123 Identities=10% Similarity=0.031 Sum_probs=62.3
Q ss_pred CCcEEEEEECCCCcEEEcCCCCccccceeeEEECC-EEEEEeccCCCeEEEeCCC--------CeEEeCCCCcCCcceeE
Q psy9769 332 AIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFNGSLRVYDPST--------NEWSSAPPMEARRSTLG 402 (1026)
Q Consensus 332 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~yd~~~--------~~W~~~~~~p~~r~~~~ 402 (1026)
..-.+|+|||. .....+..-.....+--+..-++ .+|+.==..+.+++|+... +.+.... ....+--..
T Consensus 141 ~~G~lyr~~p~-g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~-~~~G~PDG~ 218 (307)
T COG3386 141 PTGSLYRVDPD-GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFD-EEPGLPDGM 218 (307)
T ss_pred CcceEEEEcCC-CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEcc-CCCCCCCce
Confidence 34579999994 45554432112222222222344 7777744445677775542 1111111 122222333
Q ss_pred EEEECCEEEEEeccCCCCCCCEEEEEECCCCcEEEccCCCCCcceeEEEEE---CCEEEEEeC
Q psy9769 403 VAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVL---NGCLYAENL 462 (1026)
Q Consensus 403 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG 462 (1026)
++--+|.||+.+..++ ..+.+|+|. ++=...-.+|.++.. +++.- .+.|||...
T Consensus 219 ~vDadG~lw~~a~~~g----~~v~~~~pd-G~l~~~i~lP~~~~t-~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 219 AVDADGNLWVAAVWGG----GRVVRFNPD-GKLLGEIKLPVKRPT-NPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEeCCCCEEEecccCC----ceEEEECCC-CcEEEEEECCCCCCc-cceEeCCCcCEEEEEec
Confidence 3445889997655443 579999997 333333355543332 22222 368898864
No 469
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=20.11 E-value=5.2e+02 Score=29.64 Aligned_cols=100 Identities=11% Similarity=0.135 Sum_probs=56.2
Q ss_pred cEEEEEECCCCcEEEcCCCCccccceeeEEECCEEEEEeccCC--CeEEEeCCCCeEEeCCCCcCCcceeEEEEECCEEE
Q psy9769 334 RSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG--SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIY 411 (1026)
Q Consensus 334 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~--~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iy 411 (1026)
..+|+=.-...++..+-+|+...+.. +.+++++|.+--..+ .++.-|+.-+.-++...... +++--+..+|+=.
T Consensus 206 GklWis~d~g~tFeK~vdl~~~vS~P--mIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrI 281 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNVSSP--MIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRI 281 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCcCCc--eEEcceEEEEecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEE
Confidence 34555444444666666666654443 457999999976654 45555555444443333221 1111233456544
Q ss_pred EEeccCCCCCCCEEEEEECCCCcEEEcc-CCCC
Q psy9769 412 AVGGFDGSSGLNSAEVYDPSTEKWNMIA-PMST 443 (1026)
Q Consensus 412 v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~ 443 (1026)
||-- -.++|.|||+++.-+++. .+|.
T Consensus 282 vFq~------~GdIylydP~td~lekldI~lpl 308 (668)
T COG4946 282 VFQN------AGDIYLYDPETDSLEKLDIGLPL 308 (668)
T ss_pred EEec------CCcEEEeCCCcCcceeeecCCcc
Confidence 4411 147999999999988775 3343
Done!