RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9769
(1026 letters)
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 389 bits (1001), Expect = e-128
Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 10/261 (3%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLI---ADGVEVAAHKMVLAACSPYFHAMFIS-F 98
+ H S+ N R+Q L CD+ L A G E AH+ VLAA + YF + F
Sbjct: 10 FECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQF 69
Query: 99 EESKQERIVLK------GVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRD 152
ES+ R+ ++ G +P+ ++ +I+Y+Y+ I V+ +V +L A+ L +++
Sbjct: 70 SESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKE 129
Query: 153 ACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVL 212
C +FL+ +LH +NC+ I + A +++ L A + I +F ++++ EEF +L +
Sbjct: 130 FCGEFLKKKLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIR 189
Query: 213 GLISSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEET 272
+S ++ V +EE +FE V+ WV + E R+++ EL + +RL + YL + V+ E
Sbjct: 190 DWLSDLEITVDSEEVLFETVLKWVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPER 249
Query: 273 VFKNDIRCKDYLIEALKYHIL 293
+ N+ C + +A++ H L
Sbjct: 250 LVANNEVCVKLVADAVERHAL 270
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 385 bits (990), Expect = e-127
Identities = 77/251 (30%), Positives = 139/251 (55%), Gaps = 4/251 (1%)
Query: 39 EKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFIS- 97
E + H ++ ++ R+++ CD L+ DG E+ K +LAA SPY
Sbjct: 5 EGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYN 64
Query: 98 --FEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACC 155
++ +I L+G+ ++ ++DY++S +I + E+ +Q ++ AA+LL LTD++ CC
Sbjct: 65 PPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCC 124
Query: 156 DFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLI 215
+FL+ + NC+GIR FA + + A Y+E HF ++ EEFL LS +++ +I
Sbjct: 125 EFLEGCIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVI 184
Query: 216 SSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFK 275
S +KL V NE VFE VI W+ +D E R+ H+ ++M + + L YL +++ E + +
Sbjct: 185 SLEKLNVGNERYVFEAVIRWIAHDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLVR 244
Query: 276 NDIR-CKDYLI 285
++ C + +
Sbjct: 245 EIVKECSNIPL 255
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 241 bits (616), Expect = 2e-72
Identities = 100/158 (63%), Positives = 124/158 (78%), Gaps = 5/158 (3%)
Query: 307 TPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE 366
+ RT+ R P+ +PK+M+VVGGQAPKAIRSVECYDFK ERW VAE+P+RRCRAG+V++
Sbjct: 3 SVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAG 62
Query: 367 KVYAVGGFNGSLR-----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSG 421
V+AVGGFNGSLR YDP ++W+S M RRSTLG AVLN L+YAVGGFDGS+G
Sbjct: 63 LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG 122
Query: 422 LNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
L+S E Y+ + +W +APM+TRRSSVGVGV+ G LYA
Sbjct: 123 LSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYA 160
Score = 191 bits (487), Expect = 1e-54
Identities = 61/146 (41%), Positives = 81/146 (55%), Gaps = 8/146 (5%)
Query: 322 MLVVGGQ-APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR- 379
+ VGG + SVE Y+ K+ W VA M TRR G+ + +YAVGG++ + R
Sbjct: 111 LYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ 170
Query: 380 ------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
Y+ +TNEW+ M RRS GV VLN+L+YAVGG DG S EVYDP+T
Sbjct: 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230
Query: 434 KWNMIAPMSTRRSSVGVGVLNGCLYA 459
W +A M+ R + GV +NG LY
Sbjct: 231 AWRQVADMNMCRRNAGVCAVNGLLYV 256
Score = 180 bits (459), Expect = 9e-51
Identities = 61/143 (42%), Positives = 83/143 (58%), Gaps = 9/143 (6%)
Query: 322 MLVVGG---QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSL 378
+ VGG + + + +VECY+ T W +AEM TRR AG+ L+ +YAVGG +G L
Sbjct: 158 LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL 217
Query: 379 R-----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
VYDP+TN W M R GV +N L+Y VGG DGS L S E Y+P+T+
Sbjct: 218 VRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277
Query: 434 KWNMIAP-MSTRRSSVGVGVLNG 455
KW +++ MST RS GV V++
Sbjct: 278 KWTVVSSCMSTGRSYAGVTVIDK 300
Score = 144 bits (365), Expect = 3e-38
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 352 MPTRRCRAGLVFLHEKVYAVGGFNG----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLN 407
M R + L + + VGG S+ YD W + +RR G+ +
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 408 SLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
L++AVGGF+GS + + + YDP ++W +A M RRS++G VLNG LYA
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYA 113
Score = 137 bits (347), Expect = 7e-36
Identities = 57/85 (67%), Positives = 65/85 (76%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGGYD SRQCLS+VE Y+ N W + +M +RSGAGVGVL+N+LYAVGGHDGPLVRK
Sbjct: 161 VGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRK 220
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVE YDP T W V DM +CRRNA
Sbjct: 221 SVEVYDPTTNAWRQVADMNMCRRNA 245
Score = 117 bits (295), Expect = 6e-29
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDG--PLV 834
VGG+DG + LSSVE Y+ + N W V M +RS GVGV+ +LYAVGG+D
Sbjct: 114 VGGFDGST--GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQC 171
Query: 835 RKSVEAYDPETQTWSGVPDMALCRRNA 861
+VE Y+ T W+ + +M+ R A
Sbjct: 172 LSTVECYNATTNEWTYIAEMSTRRSGA 198
Score = 115 bits (290), Expect = 2e-28
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG++G R + +V+ Y P ++ W V +M +RS G VL+ +LYAVGG DG
Sbjct: 67 VGGFNGSLR--VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLS 124
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVEAY+ ++ W V M R +
Sbjct: 125 SVEAYNIKSNEWFHVAPMNTRRSSV 149
Score = 110 bits (277), Expect = 1e-26
Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+DG SVE+Y P N W V DM R AGV ++ +LY VGG DG
Sbjct: 210 VGGHDG--PLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLA 267
Query: 837 SVEAYDPETQTWSGVPDMALCRRNAV 862
SVE Y+P T W+ V R+
Sbjct: 268 SVEYYNPTTDKWTVVSSCMSTGRSYA 293
Score = 108 bits (271), Expect = 7e-26
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 7/97 (7%)
Query: 321 VMLVVGGQ-APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR 379
++ VGG P +SVE YD T W+ VA+M R AG+ ++ +Y VGG +GS
Sbjct: 206 LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN 265
Query: 380 -----VYDPSTNEWSS-APPMEARRSTLGVAVLNSLI 410
Y+P+T++W+ + M RS GV V++ +
Sbjct: 266 LASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
Score = 103 bits (260), Expect = 2e-24
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
V G + + SVE Y + W V ++ +R AG+ + +++AVGG +G L +
Sbjct: 20 VVGGQA--PKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVR 77
Query: 837 SVEAYDPETQTWSGVPDMALCRRN---AVLE 864
+V++YDP W+ V +M R AVL
Sbjct: 78 TVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108
Score = 56.5 bits (137), Expect = 1e-08
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKD-MLYKRSGAGVGVLDNIL 823
VGG DG L+SVE Y+P + W V M RS AGV V+D L
Sbjct: 257 VGGDDGSCN--LASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
Score = 48.8 bits (117), Expect = 4e-06
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 811 RSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
R+ + L V G P +SVE YD + + W V ++ R A
Sbjct: 5 RTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA 55
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 223 bits (571), Expect = 6e-66
Identities = 57/164 (34%), Positives = 84/164 (51%), Gaps = 11/164 (6%)
Query: 307 TPRTKPRQPLR--VPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL 364
+ PR V +++ GG +++ +E Y+ W +A++ R +
Sbjct: 10 SSGLVPRGSHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV 69
Query: 365 HEKVYAVGGFNG---------SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGG 415
+YAVGG N +L Y+P TN+WS PM R+ +GV V++ IYAVGG
Sbjct: 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG 129
Query: 416 FDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
G NS E Y+P ++W+++APM TRR VGV VLN LYA
Sbjct: 130 SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYA 173
Score = 199 bits (507), Expect = 3e-57
Identities = 62/148 (41%), Positives = 84/148 (56%), Gaps = 10/148 (6%)
Query: 322 MLVVGGQAP-----KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG 376
+ VGG+ +++CY+ T +W A M R R G+ + +YAVGG +G
Sbjct: 73 LYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHG 132
Query: 377 SLR-----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPS 431
+ Y+P +EW PM RR +GVAVLN L+YAVGGFDG++ LNSAE Y P
Sbjct: 133 CIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPE 192
Query: 432 TEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
+W MI M+T RS GV VL+ C+YA
Sbjct: 193 RNEWRMITAMNTIRSGAGVCVLHNCIYA 220
Score = 191 bits (487), Expect = 1e-54
Identities = 62/144 (43%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 322 MLVVGGQ-APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG---- 376
+ VGG SVE Y+ + + W VA M TRR G+ L+ +YAVGGF+G
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 183
Query: 377 -SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW 435
S Y P NEW M RS GV VL++ IYA GG+DG LNS E YD TE W
Sbjct: 184 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243
Query: 436 NMIAPMSTRRSSVGVGVLNGCLYA 459
+APM RRS++G+ V G +Y
Sbjct: 244 TFVAPMKHRRSALGITVHQGRIYV 267
Score = 177 bits (451), Expect = 1e-49
Identities = 53/137 (38%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 322 MLVVGGQ-APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR- 379
+ VGG + S ECY + W+ + M T R AG+ LH +YA GG++G +
Sbjct: 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQL 230
Query: 380 ----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW 435
YD T W+ PM+ RRS LG+ V IY +GG+DG + L+S E YDP T+ W
Sbjct: 231 NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290
Query: 436 NMIAPMSTRRSSVGVGV 452
+ + M++ RS VGV V
Sbjct: 291 SEVTRMTSGRSGVGVAV 307
Score = 124 bits (314), Expect = 2e-31
Identities = 42/85 (49%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+DG L+S E Y PERN W + M RSGAGV VL N +YA GG+DG
Sbjct: 174 VGGFDG--TNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 231
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVE YD ET+TW+ V M R
Sbjct: 232 SVERYDVETETWTFVAPMKHRRSAL 256
Score = 120 bits (302), Expect = 7e-30
Identities = 38/85 (44%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG G +SVE Y PER+ W V ML +R G GV VL+ +LYAVGG DG
Sbjct: 127 VGGSHGCI--HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLN 184
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
S E Y PE W + M R A
Sbjct: 185 SAECYYPERNEWRMITAMNTIRSGA 209
Score = 117 bits (294), Expect = 8e-29
Identities = 37/85 (43%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
GGYDG + L+SVE Y E TW V M ++RS G+ V +Y +GG+DG
Sbjct: 221 AGGYDG--QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLD 278
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVE YDP+T TWS V M R
Sbjct: 279 SVECYDPDTDTWSEVTRMTSGRSGV 303
Score = 110 bits (278), Expect = 1e-26
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 777 VGGYDGIS--RQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLV 834
VGG + S+++ Y+P N W P M R+ GVGV+D +YAVGG G +
Sbjct: 76 VGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIH 135
Query: 835 RKSVEAYDPETQTWSGVPDMALCRRNA 861
SVE Y+PE W V M R
Sbjct: 136 HNSVERYEPERDEWHLVAPMLTRRIGV 162
Score = 101 bits (253), Expect = 2e-23
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH----DGP 832
GGY Q LS +E Y+P TW + D+ RSG V+ +LYAVGG DG
Sbjct: 30 AGGYFR---QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 86
Query: 833 LVRKSVEAYDPETQTWSGVPDMALCRRN---AVLE 864
+++ Y+P T WS M++ R V++
Sbjct: 87 TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVID 121
Score = 86.6 bits (215), Expect = 2e-18
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 384 STNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMST 443
S++ R + + LIY GG+ S L+ E Y+PS W +A +
Sbjct: 2 SSHHHHHHSSGLVPRGSHAP-KVGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQV 59
Query: 444 RRSSVGVGVLNGCLYA 459
RS + V+ G LYA
Sbjct: 60 PRSGLAGCVVGGLLYA 75
Score = 60.0 bits (146), Expect = 1e-09
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 2/64 (3%)
Query: 798 RNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALC 857
+ L R + ++Y GG+ + +EAY+P TW + D+ +
Sbjct: 3 SHHHHHHSSGLVPRGSHAP-KVGRLIYTAGGYFRQSLS-YLEAYNPSNGTWLRLADLQVP 60
Query: 858 RRNA 861
R
Sbjct: 61 RSGL 64
Score = 58.9 bits (143), Expect = 3e-09
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V M RSG GV V
Sbjct: 268 LGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 219 bits (561), Expect = 1e-64
Identities = 59/163 (36%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 307 TPRTKPRQPLRVPKVMLVVGG--QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL 364
PRT+ R +V+LVVGG I VE YD KT+ W + + +R V L
Sbjct: 4 GPRTRARLG--ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL 61
Query: 365 HEKVYAVGGFNG-----SLRVYDPSTNE---WSSAPPMEARRSTLGVAVLNSLIYAVGGF 416
H+++Y +GG++G S+ D + +E W S PM RR G L +IY GGF
Sbjct: 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGF 121
Query: 417 DGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
DGS S E YDP+ ++W+M+ M T R G+ V +G +Y
Sbjct: 122 DGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164
Score = 196 bits (501), Expect = 2e-56
Identities = 59/146 (40%), Positives = 81/146 (55%), Gaps = 9/146 (6%)
Query: 323 LVVGGQ-APKAIRSVECYDFKTER---WQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSL 378
V+GG + SVEC D+ + W SVA M RR AG L + +Y GGF+GS
Sbjct: 66 YVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR 125
Query: 379 R-----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTE 433
R YDP+ ++WS M+ R G+ V + +IY +GG+DG + LNS E YDP T
Sbjct: 126 RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185
Query: 434 KWNMIAPMSTRRSSVGVGVLNGCLYA 459
W + PM+T+RS GV +LN +Y
Sbjct: 186 HWTNVTPMATKRSGAGVALLNDHIYV 211
Score = 192 bits (489), Expect = 7e-55
Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 322 MLVVGGQ-APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR- 379
+ V GG + S+E YD ++W + +M T R AGLV +Y +GG++G
Sbjct: 115 IYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNIL 174
Query: 380 ----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW 435
YDP T W++ PM +RS GVA+LN IY VGGFDG++ L+S E Y+ T+ W
Sbjct: 175 NSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234
Query: 436 NMIAPMSTRRSSVGVGVLNGCLYA 459
+ M+T R VG VL G LYA
Sbjct: 235 TTVTSMTTPRCYVGATVLRGRLYA 258
Score = 183 bits (466), Expect = 9e-52
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 322 MLVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR- 379
+ +GG + SVE YD T W +V M T+R AG+ L++ +Y VGGF+G+
Sbjct: 162 IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHL 221
Query: 380 ----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKW 435
Y+ T+ W++ M R +G VL +YA+ G+DG+S L+S E YDP + W
Sbjct: 222 SSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281
Query: 436 NMIAPMSTRRSSVGVGVLN 454
++ M T+R GV VL
Sbjct: 282 EVVTSMGTQRCDAGVCVLR 300
Score = 145 bits (367), Expect = 2e-38
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 352 MPTRRCRAGLVFLHEKVYAVGGFNG------SLRVYDPSTNEWSSAPPMEARRSTLGVAV 405
M R RA L +E + VGGF + YDP T EWS P + +R +
Sbjct: 2 MQGPRTRARLG-ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS 60
Query: 406 LNSLIYAVGGFDGSSGLNSAEVYDPSTEK---WNMIAPMSTRRSSVGVGVLNGCLYA 459
L+ IY +GG+DG S L+S E D + ++ W +APM+ RR G L +Y
Sbjct: 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYV 117
Score = 128 bits (324), Expect = 7e-33
Identities = 38/85 (44%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
+GGYDG L+SVE Y P W V M KRSGAGV +L++ +Y VGG DG
Sbjct: 165 LGGYDG--LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLS 222
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVEAY+ T +W+ V M R
Sbjct: 223 SVEAYNIRTDSWTTVTSMTTPRCYV 247
Score = 122 bits (307), Expect = 1e-30
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
GG+DG +S+E Y P + W + DM R GAG+ V ++Y +GG+DG +
Sbjct: 118 SGGFDGSR--RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILN 175
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVE YDP T W+ V MA R A
Sbjct: 176 SVEKYDPHTGHWTNVTPMATKRSGA 200
Score = 117 bits (296), Expect = 4e-29
Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+DG LSSVE Y+ ++W V M R G VL LYA+ G+DG +
Sbjct: 212 VGGFDG--TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS 269
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
S+E YDP +W V M R +A
Sbjct: 270 SIECYDPIIDSWEVVTSMGTQRCDA 294
Score = 107 bits (269), Expect = 1e-25
Identities = 36/88 (40%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 777 VGGYDGISRQCLSSVEMYSP---ERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPL 833
+GGYDG SR LSSVE E W V M +R AG L +++Y GG DG
Sbjct: 68 IGGYDGRSR--LSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR 125
Query: 834 VRKSVEAYDPETQTWSGVPDMALCRRNA 861
S+E YDP WS + DM R A
Sbjct: 126 RHTSMERYDPNIDQWSMLGDMQTAREGA 153
Score = 97.0 bits (242), Expect = 5e-22
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+ + + VE Y P+ W + + KR L + +Y +GG+DG
Sbjct: 20 VGGFGS-QQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLS 78
Query: 837 SVEAYDPETQ---TWSGVPDMALCRRN---AVL 863
SVE D W V M + R L
Sbjct: 79 SVECLDYTADEDGVWYSVAPMNVRRGLAGATTL 111
Score = 60.0 bits (146), Expect = 1e-09
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLD 820
+ GYDG S LSS+E Y P ++WE V M +R AGV VL
Sbjct: 259 IAGYDGNS--LLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLR 300
Score = 54.2 bits (131), Expect = 8e-08
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 807 MLYKRSGAGVGVLDNILYAVGGHDG-PLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
M R+ A +G + +L VGG VE YDP+TQ WS +P + RR
Sbjct: 2 MQGPRTRARLGA-NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV 56
Score = 50.4 bits (121), Expect = 1e-06
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 324 VVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE 366
+ G + S+ECYD + W+ V M T+RC AG+ L E
Sbjct: 258 AIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 216 bits (552), Expect = 2e-63
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 9/158 (5%)
Query: 307 TPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE 366
+ T+PR+ ++ + GG P+ S ++ K W + +R A VF
Sbjct: 1 SMGTRPRRKKHDYRI-ALFGGSQPQ---SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN 56
Query: 367 KVYAVGGFNG----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFD-GSSG 421
VY +GG + Y+ + W S R +L IY GG + G+S
Sbjct: 57 VVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA 116
Query: 422 LNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
L E YD TE W+ M T+R S G+ NG +Y
Sbjct: 117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYV 154
Score = 191 bits (487), Expect = 1e-54
Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 322 MLVVGGQ--APKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG--- 376
+ GG A+ ECYD +TE W + M T+RC G+V + +Y GG G
Sbjct: 104 IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNV 163
Query: 377 ------SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDP 430
S VYDP+T W+ PM R G+ + I+AVGG +G GL++ E YD
Sbjct: 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDI 223
Query: 431 STEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
+W M++PM + +V + +Y
Sbjct: 224 KLNEWKMVSPMPWKGVTVKCAAVGSIVYV 252
Score = 178 bits (454), Expect = 3e-50
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 322 MLVVGG-----QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG 376
+ V GG + + + S E YD TE W + M R GLVF+ +K++AVGG NG
Sbjct: 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211
Query: 377 SLR-----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPS 431
YD NEW PM + T+ A + S++Y + GF G L Y+
Sbjct: 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTE 271
Query: 432 TEKWNMIAPMST-RRSSVGVGVLNGC 456
T+KW + + +S + V++ C
Sbjct: 272 TDKWVANSKVRAFPVTSCLICVVDTC 297
Score = 129 bits (327), Expect = 4e-33
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 777 VGGYDG--ISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLV 834
GG G +S + L+S E+Y P TW + M+ R G+ + + ++AVGG +G
Sbjct: 155 CGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGG 214
Query: 835 RKSVEAYDPETQTWSGVPDMALCRRNA 861
+VE YD + W V M
Sbjct: 215 LDNVEYYDIKLNEWKMVSPMPWKGVTV 241
Score = 117 bits (294), Expect = 7e-29
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG +G L +VE Y + N W+ V M +K + +I+Y + G G
Sbjct: 206 VGGQNG--LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLG 263
Query: 837 SVEAYDPETQTWSGVPDMALCRRNAVLESV 866
+ Y+ ET W + + L V
Sbjct: 264 HILEYNTETDKWVANSKVRAFPVTSCLICV 293
Score = 114 bits (287), Expect = 6e-28
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVR- 835
GG + L E Y +W ML +R G+ + ++Y GG G V
Sbjct: 107 SGGSEV-GNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSG 165
Query: 836 ---KSVEAYDPETQTWSGVPDMALCRRNA 861
S E YDP T+TW+ + M R+N
Sbjct: 166 RVLNSCEVYDPATETWTELCPMIEARKNH 194
Score = 107 bits (268), Expect = 2e-25
Identities = 17/86 (19%), Positives = 31/86 (36%), Gaps = 4/86 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHD-GPLVR 835
+GG + ++ Y+ +++W R + +Y GG + G
Sbjct: 61 LGGSQL---FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSAL 117
Query: 836 KSVEAYDPETQTWSGVPDMALCRRNA 861
E YD T++W P M R +
Sbjct: 118 YLFECYDTRTESWHTKPSMLTQRCSH 143
Score = 96.6 bits (241), Expect = 7e-22
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
GG S ++P+ +W ++ KR A DN++Y +GG ++
Sbjct: 18 FGGSQ------PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIK- 70
Query: 837 SVEAYDPETQTWSGVPDMALCRRN---AVLE 864
++ Y+ +W R + E
Sbjct: 71 RMDCYNVVKDSWYSKLGPPTPRDSLAACAAE 101
Score = 48.9 bits (117), Expect = 4e-06
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 323 LVVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN 375
V+ G Q + + Y+ +T++W + +++ + L+ V G N
Sbjct: 251 YVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLI----CVVDTCGAN 300
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 199 bits (508), Expect = 1e-59
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
+ H+ + + +N R++ CD L G+ AH VLA CS +F ++ +
Sbjct: 3 SGSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYG---DGT 59
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQL 162
+VL LL+D+ Y+ + +T N +L AA L++ + + C F
Sbjct: 60 GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTS 119
Query: 163 HPTNCLGIRAFADLH 177
G+
Sbjct: 120 VGQAQSGLGQSGPSS 134
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 202 bits (517), Expect = 2e-58
Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 20/167 (11%)
Query: 307 TPRTKPRQPLRVPKVMLVVGGQAPKAIRSVECYDFKTERW-QSVAEMPTRRCRAGLVFLH 365
PR + V ++L+V + YD + R + +V
Sbjct: 3 YLNDIPRHGMFVKDLILLVNDT------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ 56
Query: 366 EKVYAVGGFNGSLR-----------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVG 414
+VY VGG D ++EW PP+ + R G+ ++ IY V
Sbjct: 57 NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVA 116
Query: 415 GFD--GSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
G D + L+S YDP KW+ + + + V NG +Y
Sbjct: 117 GKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163
Score = 192 bits (491), Expect = 5e-55
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 9/145 (6%)
Query: 324 VVGGQAPK---AIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG---- 376
VV G+ + ++ SV CYD +W V +P + ++ + +Y +GG
Sbjct: 114 VVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKC 173
Query: 377 --SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434
+ +Y+P +W PM+ RS GVA+ I GG S E +D T K
Sbjct: 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK 233
Query: 435 WNMIAPMSTRRSSVGVGVLNGCLYA 459
W ++ RSS+ + L G LYA
Sbjct: 234 WEVMTEFPQERSSISLVSLAGSLYA 258
Score = 168 bits (428), Expect = 2e-46
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 18/151 (11%)
Query: 324 VVGG--QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR-- 379
+GG K V Y+ K W+ +A M T R G+ K+ GG
Sbjct: 163 CLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA 222
Query: 380 ---VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSG---------LNSAEV 427
+D TN+W RS++ + L +YA+GGF +N
Sbjct: 223 SVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWK 282
Query: 428 YDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
Y+ ++W + R + G L L
Sbjct: 283 YEDDKKEWAGMLKE--IRYASGASCLATRLN 311
Score = 125 bits (317), Expect = 9e-32
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
+GG ++C + V +Y+P++ W+ + M RS GV + + GG +
Sbjct: 164 LGGKTD-DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSA 222
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVEA+D +T W + + R +
Sbjct: 223 SVEAFDLKTNKWEVMTEFPQERSSI 247
Score = 123 bits (311), Expect = 5e-31
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH-DGPLVR 835
V G D + L SV Y P W VK++ K G V + ++Y +GG D
Sbjct: 115 VAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCT 174
Query: 836 KSVEAYDPETQTWSGVPDMALCRRNA 861
V Y+P+ W + M R
Sbjct: 175 NRVFIYNPKKGDWKDLAPMKTPRSMF 200
Score = 108 bits (272), Expect = 7e-26
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVR- 835
GG +SVE + + N WE + + +RS + L LYA+GG +
Sbjct: 212 AGGVTE--DGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLES 269
Query: 836 --------KSVEAYDPETQTWSGVPDMALCRRNAV 862
+ Y+ + + W+G+ A
Sbjct: 270 KEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGAS 304
Score = 104 bits (261), Expect = 2e-24
Identities = 26/109 (23%), Positives = 39/109 (35%), Gaps = 19/109 (17%)
Query: 324 VVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR--- 379
+ GG SVE +D KT +W+ + E P R LV L +YA+GGF
Sbjct: 211 IAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESK 270
Query: 380 -----------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIY--AVGG 415
Y+ EW+ R G + L + + +
Sbjct: 271 EFAPTEVNDIWKYEDDKKEWAGMLKE--IRYASGASCLATRLNLFKLSK 317
Score = 101 bits (253), Expect = 2e-23
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 777 VGGYDGISR----QCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHD-- 830
VGG S + W + + R G+G +D+ +Y V G D
Sbjct: 62 VGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQ 121
Query: 831 GPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
SV YDP WS V ++ +
Sbjct: 122 TEASLDSVLCYDPVAAKWSEVKNLPIKVYGH 152
Score = 78.2 bits (193), Expect = 1e-15
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 10/86 (11%)
Query: 789 SSVEMYSPERNTW-EPVKDMLYKRSGAGVGVLDNILYAVGGHDG------PLVRKSVEAY 841
++ Y P N R+ + + N +Y VGG ++
Sbjct: 24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQL 83
Query: 842 DPETQTWSGVPDMALCRRN---AVLE 864
D + W G+P + R ++
Sbjct: 84 DNVSSEWVGLPPLPSARCLFGLGEVD 109
Score = 56.6 bits (137), Expect = 2e-08
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 11/61 (18%)
Query: 777 VGGYDGISRQC-------LSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILY--AVG 827
+GG+ I + ++ + Y ++ W + R +G L L +
Sbjct: 259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKE--IRYASGASCLATRLNLFKLS 316
Query: 828 G 828
Sbjct: 317 K 317
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 195 bits (498), Expect = 7e-58
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 7/168 (4%)
Query: 33 QNNGTREKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFH 92
QN K P + + + + + + D L G E AHK +LAA SP F
Sbjct: 8 QNTMNMVKVPECRLA------DELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFS 61
Query: 93 AMFIS-FEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVR 151
AMF EESK+ R+ + V+P K ++ ++Y+ + ++ LL AA+ L ++
Sbjct: 62 AMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLK 121
Query: 152 DACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVE 199
C D L L N I ADLHS L + A ++I H +++E
Sbjct: 122 VMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 169
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 192 bits (490), Expect = 3e-57
Identities = 33/125 (26%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
Y + H++ ++N RK+++LCDV ++ +G AH+ VLAACS YFH+ + +++
Sbjct: 14 YESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE 73
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQ- 161
+ + V + LI + Y+ ++ ++++NV + L + ++ ++C FL+ +
Sbjct: 74 LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133
Query: 162 LHPTN 166
L T+
Sbjct: 134 LDSTS 138
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 189 bits (482), Expect = 4e-56
Identities = 35/120 (29%), Positives = 68/120 (56%), Gaps = 3/120 (2%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFIS---FE 99
+ H ++ ++ R+++ CD L+ DG E+ K +LAA SPY +
Sbjct: 25 VSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD 84
Query: 100 ESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ +I L+G+ ++ ++DY++S +I + E+ +Q ++ AA+LL LTD++ CC+FL+
Sbjct: 85 DGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 187 bits (476), Expect = 2e-55
Identities = 32/117 (27%), Positives = 64/117 (54%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
Y + H++ ++N RK+++LCDV + +G AH+ VLAACS YFH+ + + +
Sbjct: 7 YESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGE 66
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ + V + LI + Y+ ++ +++ENV + L + ++ ++C FL+
Sbjct: 67 LNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 193 bits (492), Expect = 4e-55
Identities = 44/148 (29%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 322 MLVVGGQAP----KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG- 376
+ VVGG+ + + SV CYD + +W +P ++ + VY +GG
Sbjct: 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD 160
Query: 377 -----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPS 431
+ VYDP EW PM+ RS G V + I G + +SAEVY +
Sbjct: 161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSIT 220
Query: 432 TEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
KW RSS+ + L G LYA
Sbjct: 221 DNKWAPFEAFPQERSSLSLVSLVGTLYA 248
Score = 181 bits (460), Expect = 8e-51
Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 21/155 (13%)
Query: 320 KVMLVVGGQAPKAIRSVECYDFKTERWQSVAE-MPTRRCRAGLVFLHEKVYAVGGFNGSL 378
++ ++ YD + + LV +V+ GG +
Sbjct: 5 DLIFMISE------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNE 58
Query: 379 R-----------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGF---DGSSGLNS 424
+D +EW PP+ + R G+ + IY VGG DG L+S
Sbjct: 59 DNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDS 118
Query: 425 AEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
YD + KW P+ V +Y
Sbjct: 119 VMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYV 153
Score = 169 bits (429), Expect = 1e-46
Identities = 35/152 (23%), Positives = 56/152 (36%), Gaps = 18/152 (11%)
Query: 324 VVGGQAP--KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR-- 379
V+GG+ K + + YD K W+ +A M T R G ++ G +
Sbjct: 153 VIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTS 212
Query: 380 ---VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDG---------SSGLNSAEV 427
VY + N+W+ RS+L + L +YA+GGF + LN
Sbjct: 213 SAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWR 272
Query: 428 YDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
Y+ +KW + + G L L
Sbjct: 273 YNEEEKKWEGVLREI--AYAAGATFLPVRLNV 302
Score = 124 bits (314), Expect = 2e-31
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
+GG R+CL+ + +Y P++ W+ + M RS G V D + G +
Sbjct: 154 IGGKGS-DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTS 212
Query: 837 SVEAYDPETQTWSGVPDMALCRRNAVLESV 866
S E Y W+ R + L S+
Sbjct: 213 SAEVYSITDNKWAPFEAFPQERSSLSLVSL 242
Score = 122 bits (308), Expect = 1e-30
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 362 VFLHEKVYAVGGFNGSLRVYDPSTNEWSSAP-PMEARRSTLGVAVLNSLIYAVGGFDGSS 420
+FL + ++ + YDP+ NE A + ++ + + + ++ GG +
Sbjct: 1 MFLQDLIFMISEEGA--VAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNE 58
Query: 421 GLNSA------EVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
+D +W + P+ + R G+G +Y
Sbjct: 59 DNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYV 103
Score = 115 bits (291), Expect = 2e-28
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 17/114 (14%)
Query: 324 VVGG-QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLR--- 379
V G S E Y +W P R LV L +YA+GGF
Sbjct: 201 VAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESG 260
Query: 380 -----------VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGL 422
Y+ +W G L + + + L
Sbjct: 261 ELVPTELNDIWRYNEEEKKWEGVLRE--IAYAAGATFLPVRLNVLRLTKMAENL 312
Score = 109 bits (274), Expect = 3e-26
Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 777 VGGYDGIS-RQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH-DGPLV 834
VGG + +CL SV Y W + Y G V +++Y +GG
Sbjct: 104 VGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163
Query: 835 RKSVEAYDPETQTWSGVPDMALCRRNA 861
+ YDP+ W + M R
Sbjct: 164 LNKMCVYDPKKFEWKELAPMQTARSLF 190
Score = 109 bits (274), Expect = 3e-26
Identities = 24/95 (25%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDG----- 831
G SS E+YS N W P + +RS + L LYA+GG
Sbjct: 202 AAGVTD--TGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETES 259
Query: 832 ----PLVRKSVEAYDPETQTWSGVPDMALCRRNAV 862
P + Y+ E + W GV A
Sbjct: 260 GELVPTELNDIWRYNEEEKKWEGVLREIAYAAGAT 294
Score = 99.4 bits (248), Expect = 8e-23
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 7/92 (7%)
Query: 777 VGGY----DGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH--- 829
GG D + + + W + + R G+G N +Y VGG
Sbjct: 51 AGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIK 110
Query: 830 DGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
DG SV YD + W +
Sbjct: 111 DGERCLDSVMCYDRLSFKWGESDPLPYVVYGH 142
Score = 76.6 bits (189), Expect = 3e-15
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 10/86 (11%)
Query: 789 SSVEMYSPERNTWE-PVKDMLYKRSGAGVGVLDNILYAVGGHDG------PLVRKSVEAY 841
Y P N ++ + +N ++ GG + +
Sbjct: 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQF 72
Query: 842 DPETQTWSGVPDMALCRRN---AVLE 864
D W G+P + R
Sbjct: 73 DHLDSEWLGMPPLPSPRCLFGLGEAL 98
Score = 67.0 bits (164), Expect = 6e-12
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 777 VGGYDGISRQC-------LSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGH 829
+GG+ + + L+ + Y+ E WE V + AG L L +
Sbjct: 249 IGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGATFLPVRLNVLRLT 306
Query: 830 DG 831
Sbjct: 307 KM 308
Score = 58.5 bits (142), Expect = 3e-09
Identities = 11/68 (16%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 324 VVGG----------QAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGG 373
+GG P + + Y+ + ++W+ V AG FL ++ +
Sbjct: 248 AIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREI--AYAAGATFLPVRLNVLRL 305
Query: 374 FNGSLRVY 381
+ +Y
Sbjct: 306 TKMAENLY 313
Score = 43.1 bits (102), Expect = 3e-04
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 819 LDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESVAS 868
L ++++ + + AYDP + +N V S+ +
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHV--SLVT 43
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 180 bits (459), Expect = 8e-53
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 56 MNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFIS-FEESKQERIVLKGVDPN 114
+ + + + D L G E AHK +LAA SP F AMF EESK+ R+ + V+P
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 75
Query: 115 ALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFA 174
K ++ ++Y+ + ++ LL AA+ L ++ C D L L N I A
Sbjct: 76 VFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILA 135
Query: 175 DLHSCLDL 182
DLHS L
Sbjct: 136 DLHSADQL 143
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 178 bits (455), Expect = 1e-52
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFIS-FEES 101
+ H S +N +R +++L DV ++ + AHK VL ACS F+++F + +
Sbjct: 7 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 66
Query: 102 KQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ ++P +L+D++Y+ + + E N+ ++ A LQ+ V D C F++
Sbjct: 67 LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 177 bits (451), Expect = 4e-52
Identities = 33/116 (28%), Positives = 62/116 (53%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
Y + H + +N RK+++LCDV LI + E AH+ VLAACS YF + ++
Sbjct: 10 YESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKND 69
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFL 158
+ + V L+ + Y+ ++ ++ EN++ ++ A L++ ++ D+C FL
Sbjct: 70 LVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 174 bits (443), Expect = 4e-51
Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 1/113 (0%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFIS-FEESKQER 105
H+S +N R Q LLCDV ++ +G E H+ VLAACS YF +F S +Q
Sbjct: 7 DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNV 66
Query: 106 IVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFL 158
+ V AL L+D+ Y+ + V+ NV +L AA LL++ V C D L
Sbjct: 67 YEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 173 bits (441), Expect = 1e-50
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
+N H + N MR LCDV ++ D E AH+ VLA S F +F
Sbjct: 6 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF----HRN 61
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ L + P + +++Y Y+ + E++ LL AA +L++ + + C L+
Sbjct: 62 SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 180 bits (458), Expect = 1e-50
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 1/166 (0%)
Query: 35 NGTREKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAM 94
N + + + + + + + + D L G E AHK +LAA SP F AM
Sbjct: 144 NISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM 203
Query: 95 FIS-FEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDA 153
F EESK+ R+ + V+P K ++ ++Y+ + ++ LL AA+ L ++
Sbjct: 204 FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 263
Query: 154 CCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVE 199
C D L L N I ADLHS L + A ++I H +++E
Sbjct: 264 CEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE 309
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 167 bits (426), Expect = 8e-49
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 3/113 (2%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERI 106
H+ + + +N R++ CD L G+ AH VLA CS +F +++ + +
Sbjct: 6 QHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLY---GDGSGGSV 62
Query: 107 VLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
VL LL+D+ Y+ + +T N +L AA L++ + + C F
Sbjct: 63 VLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKP 115
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 167 bits (425), Expect = 1e-48
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 47 HHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQERI 106
HH E +N R+ LCD ++ + AH+ VLA+ S YF A++ S +
Sbjct: 4 HHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS-TSENNVFL 62
Query: 107 VLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
V + + L++++Y+ + + NV+ + AA+ L++ +V C ++
Sbjct: 63 DQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 163 bits (416), Expect = 2e-47
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
H+ E +N R+ LLCD + DGV AHK VLAACS YF +F +
Sbjct: 5 SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLF----VDQ 60
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
++ + L + L +++++Y+ ++ ++ ENV +L A LQ+ D+ AC
Sbjct: 61 KDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 162 bits (412), Expect = 9e-47
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 36 GTREKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMF 95
G+ + + + E +N R Q L CDV ++ G AH+ VLAA S YF +F
Sbjct: 4 GSAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLF 63
Query: 96 ISFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACC 155
+ V P + + ++ + Y+ + + + +L+ A LQ+ ++ +
Sbjct: 64 N--NSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGT 121
Query: 156 DFLQ 159
+F
Sbjct: 122 EFFL 125
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 155 bits (393), Expect = 2e-44
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 59 MRKQNLLCDVKLI----ADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPN 114
M L+ DV + V AHK VLA S F+AMF + I + V+P
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPA 61
Query: 115 ALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQL 162
A +L+ Y+YS EI + + V L AA + + AC +FL+ L
Sbjct: 62 AFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL 109
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 154 bits (391), Expect = 4e-44
Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 8/126 (6%)
Query: 36 GTREKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMF 95
G+ PP R R + LCD + E AH +VLA S
Sbjct: 1 GSMSLPPIRLPSPYGSDRLVQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRG 60
Query: 96 ISFEESKQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACC 155
+ + +G+ P+ L+++VY + + ++ L AA L + + +AC
Sbjct: 61 --------QWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACW 112
Query: 156 DFLQCQ 161
+
Sbjct: 113 RARGDR 118
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 148 bits (376), Expect = 3e-42
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 161 QLHPTNCLGIRAFADLHSCLDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKL 220
+ NCL + AD HS +L + A++ + H A++ EEFL L H + +IS
Sbjct: 7 GVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIISDG-- 64
Query: 221 MVSNEEKVFECVIAWVNYDLESRQKHVAELMEYVRL 256
V + E + AW+N++ E R+ L ++
Sbjct: 65 -VPCSQNPTEAIEAWINFNKEEREAFAESLRTSLKE 99
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 142 bits (360), Expect = 6e-40
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 37 TREKPPYRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFI 96
+R+ ++ ++ ++N R L CDV +I + + AHK +L+A S YFH +F
Sbjct: 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLF- 61
Query: 97 SFEESKQERIVLKGVDPNALKLLIDYVYSCEIY-VTEENVQMLLPAANLLQLTDVRD 152
+ + L + +++Y+YS +I V + + L+ + LL + +
Sbjct: 62 ---SVAGQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 121 bits (304), Expect = 8e-30
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 321 VMLVVGGQAPKAIRSVECYDFKTERWQSVAEMP-TRRCRAGLVFLHEKVYAVGGFNG--- 376
+ + G A A ++ K ++W ++A P R +A F+ +Y GG
Sbjct: 21 TVYIGLGSAGTAWYKLD-TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSE 79
Query: 377 -------SLRVYDPSTNEWSS-APPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVY 428
+ Y+P TN W + V N Y GG + + E
Sbjct: 80 GLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDL 139
Query: 429 DPSTEKWNMIAPMSTRRSSVGVGV 452
+ + + I ++
Sbjct: 140 NEAGKDSTAIDKINAHYFDKKAED 163
Score = 109 bits (273), Expect = 1e-25
Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 33/189 (17%)
Query: 326 GGQAPKAIRSVECYDFKTERWQSVAEMP-TRRCRAGLVFLHEKVYAVGGFNG----SLRV 380
+ + + +D T++W E P A +V +K + + G + V
Sbjct: 160 KAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAV 219
Query: 381 Y----DPSTNEWSSAPPMEARRSTLG--VAVLNSLIYAVGG-----------------FD 417
+ + +W+ P+ + G + N + GG +
Sbjct: 220 FELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279
Query: 418 GSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA---ENLDGRILGCVKEIT 474
G S +++ KW+ +S R+ N L E G+ + IT
Sbjct: 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLIT 339
Query: 475 --DWGLIIE 481
D + ++
Sbjct: 340 VKDNKVTVQ 348
Score = 108 bits (272), Expect = 1e-25
Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 349 VAEMPTRRCRAGLVFLHEKVYAVGGFNG-SLRVYDPSTNE--WSSAPPM-EARRSTLGVA 404
+ E P ++ VY G G + D + W++ R A
Sbjct: 3 LPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA 62
Query: 405 VLNSLIYAVGGFDGSSG-----LNSAEVYDPSTEKWNMIA-PMSTRRSSVGVGVLNGCLY 458
++ +Y GG +S N Y+P T W + + V NG Y
Sbjct: 63 FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAY 122
Query: 459 A 459
Sbjct: 123 V 123
Score = 108 bits (271), Expect = 2e-25
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 26/151 (17%)
Query: 322 MLVVGGQ------APKAIRSVECYDFKTERWQSVA-EMPTRRCRAGLVFLHEKVYAVGGF 374
+ V GG + V Y+ KT W + P + K Y GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127
Query: 375 NGSLR-----VYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYD 429
N ++ + + + ++ + A F +D
Sbjct: 128 NQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------YFF-----NKFLLSFD 174
Query: 430 PSTEKWNMIAPMS-TRRSSVGVGVLNGCLYA 459
PST++W+ + V +
Sbjct: 175 PSTQQWSYAGESPWYGTAGAAVVNKGDKTWL 205
Score = 80.4 bits (198), Expect = 3e-16
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 4/82 (4%)
Query: 777 VGGYDGIS---RQCLSSVEMYSPERNTWEPVKDML-YKRSGAGVGVLDNILYAVGGHDGP 832
GG S Q + V Y+P+ N+W + +G V + Y GG +
Sbjct: 71 FGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQN 130
Query: 833 LVRKSVEAYDPETQTWSGVPDM 854
+ E + + + + +
Sbjct: 131 IFNGYFEDLNEAGKDSTAIDKI 152
Score = 77.3 bits (190), Expect = 4e-15
Identities = 20/145 (13%), Positives = 45/145 (31%), Gaps = 29/145 (20%)
Query: 322 MLVVGGQAPKAIRS--VECYDFKTE--RWQSVAEMPTRRCRAGL--VFLHEKVYAVGGFN 375
++ G+A +R+ V DF +W +A + + AG ++ + GG
Sbjct: 203 TWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAG 262
Query: 376 G----------------------SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAV 413
S ++ +W + + R+ N+ + +
Sbjct: 263 FKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLII 322
Query: 414 GGFD-GSSGLNSAEVYDPSTEKWNM 437
GG G + + + K +
Sbjct: 323 GGETAGGKAVTDSVLITVKDNKVTV 347
Score = 71.9 bits (176), Expect = 2e-13
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 10/92 (10%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDM-LYKRSGAGVGVLDNILYAVGGHD----- 830
G G + L + W + R A +D LY GG
Sbjct: 25 GLGSAGTAWYKLD----TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEG 80
Query: 831 GPLVRKSVEAYDPETQTWSGVPDMALCRRNAV 862
V V Y+P+T +W + A
Sbjct: 81 LTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH 112
Score = 65.7 bits (160), Expect = 2e-11
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 790 SVEMYSPERNTWEPVKDMLYK-RSGAGVGVLDNILYAVGGHDGPLVR-KSVEAY--DPET 845
+ + P W + + +GA V + + + G P +R +V
Sbjct: 169 FLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN 228
Query: 846 QTWSGVPDMALCRRNA 861
W+ + ++ A
Sbjct: 229 LKWNKLAPVSSPDGVA 244
Score = 60.0 bits (145), Expect = 1e-09
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 15/83 (18%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
GG + E + + + N Y + K
Sbjct: 124 TGGVNQNIF--NGYFEDLNEAGKDSTAIDKI-------------NAHYFDKKAEDYFFNK 168
Query: 837 SVEAYDPETQTWSGVPDMALCRR 859
+ ++DP TQ WS +
Sbjct: 169 FLLSFDPSTQQWSYAGESPWYGT 191
Score = 56.5 bits (136), Expect = 2e-08
Identities = 14/106 (13%), Positives = 28/106 (26%), Gaps = 20/106 (18%)
Query: 777 VGGYDGI-SRQCLSSVEMYSPERNTWEPVKDMLYKRS--GAGVGVLDNILYAVGG----- 828
+ G R ++ W + + G G+ ++ L GG
Sbjct: 206 INGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKG 265
Query: 829 ------------HDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAV 862
H+G S + + W +++ R V
Sbjct: 266 SRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGV 311
Score = 56.1 bits (135), Expect = 3e-08
Identities = 8/71 (11%), Positives = 20/71 (28%), Gaps = 1/71 (1%)
Query: 780 YDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVR-KSV 838
Y + S +++ W+ ++ R+ +N L +GG
Sbjct: 276 YAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDS 335
Query: 839 EAYDPETQTWS 849
+ +
Sbjct: 336 VLITVKDNKVT 346
Score = 48.0 bits (114), Expect = 1e-05
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 806 DMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYD--PETQTWSGVPDMALCRRN 860
+ + ++ +Y G G + D + + W+ + R+
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPRD 57
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 83.1 bits (204), Expect = 2e-16
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)
Query: 338 CYDFKTERWQSVAEMPTRRCR--AGLVFLHEKVYAVGGFNG--SLRVYDPSTNEWSSAPP 393
+D T T+ G+ V G N +YD S++ W P
Sbjct: 223 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD 282
Query: 394 MEARRSTLGVAVL-NSLIYAVGG-FDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVG 451
M+ R A + + ++ +GG + G + EVY PS++ W + +
Sbjct: 283 MQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPM---LT 339
Query: 452 VLNGCLYAENLDGRILG 468
LY + + G
Sbjct: 340 ADKQGLYRSDNHAWLFG 356
Score = 79.6 bits (195), Expect = 2e-15
Identities = 27/164 (16%), Positives = 53/164 (32%), Gaps = 19/164 (11%)
Query: 322 MLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGG------F 374
++V GG + YD ++ W +M R + + +V+ +GG F
Sbjct: 256 IVVTGGNDA---KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVF 312
Query: 375 NGSLRVYDPSTNEWSSAPPMEARR----STLGVAVLNSLIYAVGG-----FDGSSGLNSA 425
+ VY PS+ W+S P + G+ ++ + G F
Sbjct: 313 EKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMN 372
Query: 426 EVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGC 469
Y + + R + + + + G+IL
Sbjct: 373 WYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416
Score = 70.0 bits (170), Expect = 2e-12
Identities = 27/189 (14%), Positives = 52/189 (27%), Gaps = 34/189 (17%)
Query: 297 GEVNKLTLVRTPRTKPRQPLRVPKVM--------LVVGGQ-------APKAIRSVECYDF 341
G+V ++ R + VM L GG A + +
Sbjct: 380 GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEP 439
Query: 342 KTERWQSVAE--MPTRRCRAGLVFLHE-KVYAVGGFNG-----------SLRVYDPSTNE 387
T A + R V L + + GG + +Y P +
Sbjct: 440 GTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499
Query: 388 WSSAPPMEARRSTLGVAVL---NSLIYAVGGFDGSSGLN--SAEVYDPSTEKWNMIAPMS 442
+ P R +++L + GG G N A+++ P+ + +
Sbjct: 500 FYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTPNYLYNSNGNLAT 559
Query: 443 TRRSSVGVG 451
+ +
Sbjct: 560 RPKITRTST 568
Score = 66.5 bits (161), Expect = 3e-11
Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 31/156 (19%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFL---------HEKVYAVGGFNG--------- 376
Y + +S + + R A K+ GG
Sbjct: 371 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 430
Query: 377 --SLRVYDPST--NEWSSAPPM-EARRSTLGVAVLNSLIYAVGG------FDGSSGLNSA 425
+ + +P T N ++ + AR V + + + GG F+ S+ + +
Sbjct: 431 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 490
Query: 426 EVYDPSTEKWNMIAPMSTRRS--SVGVGVLNGCLYA 459
E+Y P + + P S R S+ + + +G ++
Sbjct: 491 EIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFN 526
Score = 60.0 bits (144), Expect = 3e-09
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 774 TIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVL-DNILYAVGGH-DG 831
+ GG D +Y ++W P DM R + D ++ +GG G
Sbjct: 256 IVVTGGNDA------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSG 309
Query: 832 PLVRKSVEAYDPETQTWSGVPDM 854
+ K+ E Y P ++TW+ +P+
Sbjct: 310 GVFEKNGEVYSPSSKTWTSLPNA 332
Score = 52.7 bits (125), Expect = 5e-07
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 15/98 (15%)
Query: 777 VGGYDGI-----SRQCLSSVEMYSPE--RNTWEPVKDMLYKRS-GAGVGVLDNILYAVGG 828
GG + + + P NT + + R+ V + D + GG
Sbjct: 416 FGGSPDYQDSDATTNA-HIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474
Query: 829 H------DGPLVRKSVEAYDPETQTWSGVPDMALCRRN 860
+ + E Y PE T+ ++ R
Sbjct: 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVY 512
Score = 50.7 bits (120), Expect = 2e-06
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 25/145 (17%)
Query: 320 KVMLVVGGQAPKA------IRSVECYDFKTERWQSVAEMPTRRCRAGLVFLH---EKVYA 370
+ G + + + E Y + + + R + L
Sbjct: 468 STFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNG 527
Query: 371 VGGFNG-------SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGG---FDGSS 420
GG G +++ P+ S+ + T ++ VGG S
Sbjct: 528 GGGLCGDCTTNHFDAQIFTPNYLYNSNGNLATRPKITR----TSTQSVKVGGRITISTDS 583
Query: 421 GLNSAEVYDPSTEKWNMIAPMSTRR 445
++ A + T + RR
Sbjct: 584 SISKASLIRYGTATHTV--NTDQRR 606
Score = 45.3 bits (106), Expect = 9e-05
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Query: 776 GVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDN---ILYAVGGHDGP 832
G + + E+Y PE++T+ R + +L + GG G
Sbjct: 475 QRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGD 534
Query: 833 LV--RKSVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEVSCVVKGISV 887
+ + P + L R + + + +V +S
Sbjct: 535 CTTNHFDAQIFTPNYLYN---SNGNLATRPKITRTSTQSVKVGGRITISTDSSISKA 588
Score = 41.5 bits (96), Expect = 0.002
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 10/87 (11%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKR----SGAGVGVLDNILYAVGGHDGP 832
+GG + E+YSP TW + + G+ DN + G G
Sbjct: 303 IGGSWS-GGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS 361
Query: 833 LVRK-----SVEAYDPETQTWSGVPDM 854
+ + Y +
Sbjct: 362 VFQAGPSTAMNWYYTSGSGDVKSAGKR 388
Score = 38.0 bits (87), Expect = 0.016
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 793 MYSPERNTWEPVKDM--LYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPETQTWSG 850
+ P + G+ + N V G + K YD + +W
Sbjct: 223 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND---AKKTSLYDSSSDSWIP 279
Query: 851 VPDMALCRRNAVLESVA 867
PDM + R +++
Sbjct: 280 GPDMQVARGYQSSATMS 296
Score = 33.0 bits (74), Expect = 0.51
Identities = 12/95 (12%), Positives = 22/95 (23%), Gaps = 19/95 (20%)
Query: 788 LSSVEMYSPERNTWEPVKDMLYKRSGAGVGVL----------DNILYAVGGHDGPLVRKS 837
+ Y+ + R A + IL G D +
Sbjct: 369 TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT 428
Query: 838 -----VEAYDPETQ--TWSGVPDMALCRR--NAVL 863
+ +P T T + R +V+
Sbjct: 429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVV 463
Score = 32.2 bits (72), Expect = 1.1
Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 7/78 (8%)
Query: 775 IGVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVG---GHDG 831
G GG G ++++P L R ++ D
Sbjct: 526 NGGGGLCGDCTTNHFDAQIFTPN--YLYNSNGNLATRPKITRTSTQSVKVGGRITISTDS 583
Query: 832 PLVRKSVEAYDPETQTWS 849
+ T T +
Sbjct: 584 SIS--KASLIRYGTATHT 599
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 78.2 bits (192), Expect = 7e-15
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 21/158 (13%)
Query: 322 MLVVGGQAP--KAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHE-KVYAVGGFNGS- 377
+L++GG+ + + +D KT W + + R R L + V +GG
Sbjct: 454 LLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP 513
Query: 378 -LRVYDPSTNEWSSAPPM----EARRSTLGVA---VLNSLIYAVGGFDGSSGLNSAEVY- 428
+ +Y+ + + P + + G+ V I GGF + ++ +
Sbjct: 514 AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIF 573
Query: 429 ----DPSTEKW----NMIAPMSTRRSSVGVGVLNGCLY 458
+ +TE + P+ R S + L
Sbjct: 574 KYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLL 611
Score = 64.0 bits (155), Expect = 2e-10
Identities = 28/170 (16%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 322 MLVVGGQAPKAIRSVECYDFKTERWQSVAEM----PTRRCRAGLVF---LHEKVYAVGGF 374
+L++GG ++ Y+ E ++ V AGL F + + GGF
Sbjct: 503 VLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGF 560
Query: 375 NGSLR------VYDPSTNEW--------SSAPPMEARRSTLGVAVLNSLIYAVGGFDGSS 420
++ P+ R + + + VGG S
Sbjct: 561 MDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSG 620
Query: 421 GL---NSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRIL 467
NS DP +E I + + L + + G I
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTS-MGTIH 669
Score = 59.8 bits (144), Expect = 3e-09
Identities = 24/141 (17%), Positives = 46/141 (32%), Gaps = 24/141 (17%)
Query: 338 CYDFKTERWQSV--AEMPTRRCRAGLVFLHEKVYAVGGFNG----SLRVYDPSTNEWS-- 389
+ + + E P R + V+ +GG N + ++
Sbjct: 368 EINLTVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMK 427
Query: 390 -------SAPPMEARRS-TLGVAVLNSLIYAVGGFDGSSG-LNSAEVYDPSTEKWNMIAP 440
P AR T N+ + +GG L+ ++D T +W+MI
Sbjct: 428 NIEVSSSEVPV--ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS 485
Query: 441 MSTRR---SSVGVGVLNGCLY 458
+S R S+ + +G +
Sbjct: 486 LSHTRFRHSACSLP--DGNVL 504
Score = 54.0 bits (129), Expect = 2e-07
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSG-AGVGVLDNILYAVGGHDGPLVR 835
+GG Q LS ++ + W +K + + R + + D + +GG
Sbjct: 457 IGGRKA-PHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTE---G 512
Query: 836 KSVEAYDPETQTWSGVPDM 854
++ Y+ + + V
Sbjct: 513 PAMLLYNVTEEIFKDVTPK 531
Score = 43.6 bits (102), Expect = 3e-04
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 782 GISRQCLSSVEMYSPERNTWE------PVKDMLYKRSGAGVGVL--DNILYAVGGHDGPL 833
G + ++ + S + + ++ R + +N L +GG P
Sbjct: 405 GSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH 464
Query: 834 VR-KSVEAYDPETQTWSGVPDMALCR 858
+D +T+ WS + ++ R
Sbjct: 465 QGLSDNWIFDMKTREWSMIKSLSHTR 490
Score = 40.9 bits (95), Expect = 0.002
Identities = 16/112 (14%), Positives = 36/112 (32%), Gaps = 12/112 (10%)
Query: 778 GGYDGISRQCLSSVEMY----SPERNTWEPVKDM---LYKRSGAGVGVL-DNILYAVGGH 829
GG+ ++ +K + L++R G+ + + L VGG
Sbjct: 558 GGFMD-QTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT 616
Query: 830 DGPLVRK---SVEAYDPETQTWSGVPDMALCRRNAVLESVASTAEVNLGDEV 878
+ S+ + DP ++T + +P + L + +
Sbjct: 617 SPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTI 668
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Length = 119
Score = 69.3 bits (169), Expect = 3e-14
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 549 NPHHVNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKY------------- 595
+ +VN + L+ G++L V S EDHGYL+D+GV TRAF+
Sbjct: 6 SGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKG 65
Query: 596 DSVILGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNL 645
+ +GQ + C++ K+K + ++ +++ + +A +L NL
Sbjct: 66 AKLKVGQYLNCIVEKVK--GNGGVVSLSVGHSEVSTAIATEQQSWNLNNL 113
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 6e-14
Identities = 111/724 (15%), Positives = 217/724 (29%), Gaps = 252/724 (34%)
Query: 135 VQMLLPAANLLQLTDVRDACCDFLQCQLHPTNCLGIRAFA---DLHSCLDLLSTAENYIE 191
+L+P A+ + +++ F + PT FA + + +L+ ++
Sbjct: 18 HVLLVPTASFFIASQLQE---QFNKILPEPT-----EGFAADDEPTTPAELVGK---FLG 66
Query: 192 LHFAEIVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKH--VAE 249
+ + +VE + +QVL L ++ FE N D+ H A+
Sbjct: 67 -YVSSLVEPSK--VGQFDQVLNLCLTE----------FENCYLEGN-DI-----HALAAK 107
Query: 250 LMEYVRLPLLSEDYLIQRVEEETVFKNDIRCKDYLIEALKYHILVKKGEVNKLTLVRTPR 309
L++ L+ LI K+Y+ A + + P
Sbjct: 108 LLQENDTTLVKTKELI---------------KNYI-TAR--------------IMAKRPF 137
Query: 310 TKPRQP--LRV-----PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLV 362
K R +++ + GGQ + + Y F+ E+
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQG-----NTDDY-FE--------EL---------- 173
Query: 363 FLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGL 422
+Y + Y + S L L++ G + L
Sbjct: 174 ---RDLY---------QTYHVLVGDLIKF--SAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 423 NSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGC-VKEITDW--GLI 479
+ P + + + P+S +GV+ Y + ++LG E+ + G
Sbjct: 220 ENPSNT-PDKD-YLLSIPISC----PLIGVIQLAHYV--VTAKLLGFTPGELRSYLKGAT 271
Query: 480 IELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLVVAKILECVTNNL 539
++A +D + ++ LF IG + C
Sbjct: 272 GHSQGLVTAVA--IAETDSWESFFVSVRKA-------ITVLFFIG-------VRC----- 310
Query: 540 GQKQIKASLNPHHVNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDSVI 599
E Y NT+L P+ + ++ GV
Sbjct: 311 -Y-------------EAYPNTSLP-----PSILEDSLENN----EGVP------------ 335
Query: 600 LGQIVTCMISKIKVAASMSILEVTLDEELIRSANRLSPS----QVSLLNLVPGMKVIA-- 653
+ M+S I +++ +V ++ + N P+ ++SL+N V++
Sbjct: 336 -----SPMLS-IS---NLTQEQV---QDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGP 382
Query: 654 -----NICQQLPHGWKAKLKNTQFKAFISPEAMSTAYNAKYLTNKRVDLDCSVLYV-CPR 707
+ L KA Q + P + +++ L V P
Sbjct: 383 PQSLYGLNLTL-RKAKAPSGLDQSRI---P-----------FSERKLKFSNRFLPVASP- 426
Query: 708 HFH-VYLSCNEALLERQTGRPEFSVCISIVKKTIF-----ED---SSVSGTEA-VNQNCS 757
FH L L+ + + S ++ ++ D S S +E V+
Sbjct: 427 -FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 758 RPSFKREKSSRNAELSTI--GVGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAG 815
P K E +++ + G GG G+ L+ RN + G G
Sbjct: 486 LP-VKWETTTQFKATHILDFGPGGASGLGV--LTH-------RN-----------KDGTG 524
Query: 816 VGVL 819
V V+
Sbjct: 525 VRVI 528
Score = 67.4 bits (164), Expect = 2e-11
Identities = 86/569 (15%), Positives = 168/569 (29%), Gaps = 190/569 (33%)
Query: 2 ESAAEGIEGRSCLLLRY----ASQNSLDESSQKQVQNNGTREKPPYRNVHHTS-KAFETM 56
+ AE L+ ++ +S ++ S Q + V + FE
Sbjct: 55 TTPAE-------LVGKFLGYVSSL--VEPSKVGQ-----------FDQVLNLCLTEFEN- 93
Query: 57 NIMRKQN---LLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESKQER--IVLKGV 111
+ + L + D V +++ Y A ++ ++ + + V
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKN----YITARIMAKRPFDKKSNSALFRAV 149
Query: 112 DPNALKLLIDYVYSC---------------EIYVT-EENVQMLL-PAANLLQ--LTDVRD 152
+L + ++Y T V L+ +A L + D
Sbjct: 150 GEGNAQL-----VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 153 ACCDFLQCQLHPTNCLGIRAFADLHSCLDLLSTA--ENY----------IEL----HFAE 196
A ++ ++ L+ S ++Y I + H+
Sbjct: 205 AE------KVFTQGL-------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-- 249
Query: 197 IVECEEFLSLSHEQVLGLISSDKLMVSNEEKVFECVIA----WVNYDLESRQKHVAELME 252
+V + L + ++ + ++ V IA W ES V + +
Sbjct: 250 VVTAKL-LGFTPGELRSYLKG--ATGHSQGLVTAVAIAETDSW-----ESFFVSVRKAIT 301
Query: 253 Y-----VR----LPLLSEDYLIQRVEEETVFKND------IRCKDYLIEALKYHILVKKG 297
VR P S L + E+++ N+ + + E ++ ++
Sbjct: 302 VLFFIGVRCYEAYPNTS---LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV----N 354
Query: 298 EVNK---------LTLVRTPRTKPRQPLRVPKVMLVVGGQAPKA-------IRSVECYDF 341
+ N ++LV + LVV G P++ +R +
Sbjct: 355 KTNSHLPAGKQVEISLVNGAK------------NLVVSG-PPQSLYGLNLTLRKAKA--- 398
Query: 342 KTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPST---NEWSSAPPMEARR 398
+ QS R+ + FL V + F+ L P++ N+ +
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFL--PVASP--FHSHL--LVPASDLINKDLVKNNVSFNA 452
Query: 399 STLGVAVLNSLIYAVGGFDGS-----SGLNSAEVYDPSTEK---WNMIAPMSTRRSSV-- 448
+ + V Y FDGS SG S + D W + +
Sbjct: 453 KDIQIPV-----YDT--FDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA--THILD 503
Query: 449 -GVGVLNG--CLYAENLDGRILGCVKEIT 474
G G +G L N DG G V+ I
Sbjct: 504 FGPGGASGLGVLTHRNKDGT--G-VRVIV 529
Score = 47.0 bits (111), Expect = 4e-05
Identities = 73/435 (16%), Positives = 142/435 (32%), Gaps = 122/435 (28%)
Query: 509 GTIEE-IPELSNLFSIGDLVVAKILECVTNNLGQ-KQIKASLNPHHVNEMYINTTLETGL 566
G ++ EL +L+ ++V +++ L + + + I LE
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 567 VLPACVHSKEDHGYLLDVGVKNTRAFIKYDSV--I-LGQ----IVTCMISKIKVAASMSI 619
P D YLL + + S I + Q +VT + S
Sbjct: 224 NTP-------DKDYLLSIPI----------SCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 620 LE-VTLDEELIRSANRLSPSQ--VSLL-NLVPGMKVIANI---CQQL-PHGWKAKLKNTQ 671
L+ T + + +A ++ + S ++ + V+ I C + P+ L +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN---TSLPPSI 323
Query: 672 FKAFI-----SPEAM-S-TAYNAKYLTNKRVDLDCSVLYVCPRHFHVYLS-CNEALLERQ 723
+ + P M S + + + V+ S L P V +S N A +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHL---PAGKQVEISLVNGA---KN 376
Query: 724 ---TGRPE--FSVCISIVKKTIFEDSSVSGTEAVNQNCSRPSFKREKSSRNAELST---- 774
+G P+ + + +++ K ++Q SR F S R + S
Sbjct: 377 LVVSGPPQSLYGLNLTLRK--------AKAPSGLDQ--SRIPF----SERKLKFSNRFLP 422
Query: 775 IGV--------GGYDGISRQCLSSVEMYSPERNTWEPV------KDMLYKRSGAGVGVLD 820
+ D I++ + + ++ + PV D+ R +G + +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDGSDL---RVLSG-SISE 477
Query: 821 NILYAVGGHDGPLVRKSV--EAYDPETQTW---------SGVPDMALCRRNA------VL 863
I+ ++R V E T SG+ L RN V+
Sbjct: 478 RIVDC-------IIRLPVKWETTTQFKATHILDFGPGGASGLGV--LTHRNKDGTGVRVI 528
Query: 864 ESVASTAEVNLGDEV 878
VA T ++N D+
Sbjct: 529 --VAGTLDINPDDDY 541
Score = 43.9 bits (103), Expect = 4e-04
Identities = 41/267 (15%), Positives = 80/267 (29%), Gaps = 97/267 (36%)
Query: 94 MFISFEESKQERIVLKGVDPNALKLLIDYVYSC---EIYVTEENVQMLLPA---ANLLQL 147
+ FE ++ + + + Y + + T+ Q PA
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FTQ---PALTLMEKAAF 1744
Query: 148 TDVRDACCDFLQCQLHPTNCLGIRAFADLHS--------CL-DLLSTAENYIELHF---- 194
D++ L P + FA HS L D++S E+ +E+ F
Sbjct: 1745 EDLKSK-------GLIPADA----TFAG-HSLGEYAALASLADVMSI-ESLVEVVFYRGM 1791
Query: 195 --AEIVECEEF----------------LSLSHEQVLGLISSDKLMVSNEEKVFECVIAWV 236
V +E S S E + ++ V I V
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER----VGKRTGWL-VEI--V 1844
Query: 237 NYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKNDIRCKDYLIEALKYHILVKK 296
NY++E++Q YV + D+R D + L + +K
Sbjct: 1845 NYNVENQQ--------YV----AA---------------GDLRALDTVTNVLNF---IK- 1873
Query: 297 GEVNKLTLVRTPRTKPRQPLRVPKVML 323
+ K+ ++ ++ + + + L
Sbjct: 1874 --LQKIDIIELQKSLSLEEV---EGHL 1895
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 8e-14
Identities = 107/733 (14%), Positives = 208/733 (28%), Gaps = 240/733 (32%)
Query: 264 LIQRVEEETVFKNDIRCK---DYLIEALKY----HILVKKGEVNKL-TLVRTPRTKPRQP 315
++ E+ F ++ CK D L HI++ K V+ L T +K +
Sbjct: 21 ILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78
Query: 316 LRVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN 375
++ V Y F ++ P+ R + +++Y N
Sbjct: 79 VQ----KFVEEVLRIN-------YKFLMSPIKTEQRQPSMMTRM-YIEQRDRLY-----N 121
Query: 376 GSLRVYDPSTNEWSSAPPMEARRSTL-------GVAVLNSLIYAVGGFDGSSGLNSAEVY 428
+ +V+ S P R L V + V G G + + + +V
Sbjct: 122 DN-QVFAKYN--VSRLQPYLKLRQALLELRPAKNVLI-----DGVLGS-GKTWV-ALDVC 171
Query: 429 -DPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRI----LGCVKEITDWGLIIELP 483
+ +D +I L ++ L
Sbjct: 172 LSYKVQC--------------------------KMDFKIFWLNLKNCNSPET--VLEMLQ 203
Query: 484 NFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLVVAKILECVTNNLGQKQ 543
L I SD EL L K
Sbjct: 204 KLLY---QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK------------------SKP 242
Query: 544 IKASLNPHHVNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDSVILGQI 603
+ L LVL + V+N +A+ ++
Sbjct: 243 YENCL-----------------LVL--------LN-------VQNAKAWNAFN------- 263
Query: 604 VTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGM----------KVIA 653
++C IL T +++ + + + +SL + + K +
Sbjct: 264 LSC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 654 NICQQLPHGWKAKLKN----TQFKAFISPEAMSTAYNAKYLTNKRVD--LDCSVLYVCPR 707
Q LP + N + I + ++T N K++ ++ ++ S+ + P
Sbjct: 313 CRPQDLPR--EVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 708 HF-HVYLSCNEALLERQTGRPEFSVCISI-VKKTIFEDSSVSGTEAVNQNCSRPS--FKR 763
+ ++ ++ P S I + I+ D S V + S K+
Sbjct: 370 EYRKMFDRL--SVF------PP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 764 EKSSRNAELSTIGV-GGYDGISRQCLSS-------VEMYSPERNTWEPVKDMLYKRSGAG 815
K STI + Y + + + V+ Y+ + +
Sbjct: 421 PKE------STISIPSIYLELKVKLENEYALHRSIVDHYNIPKT---------FDSDDLI 465
Query: 816 VGVLDNILYA-VGGHDGPLVRKSVEAYDPETQTWSGVP----DMALCRRNAVLESVASTA 870
LD Y+ +G H L K++E + + D + +S A A
Sbjct: 466 PPYLDQYFYSHIGHH---L--KNIE----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 871 EVNLGDEVSCVVKGISVRGVIAQVGYYKLKATCENEYVEGNKADIKVGDEVQ-----AKN 925
++ + + Q+ +YK C+N+ K + V + +N
Sbjct: 517 SGSILN-------------TLQQLKFYK-PYICDND----PKYERLVNAILDFLPKIEEN 558
Query: 926 SIEVAFKSLYRIA 938
I + L RIA
Sbjct: 559 LICSKYTDLLRIA 571
Score = 67.6 bits (164), Expect = 2e-11
Identities = 65/404 (16%), Positives = 125/404 (30%), Gaps = 104/404 (25%)
Query: 1 MESAAEGIEGRSCLLLRYASQ-NSLDESSQKQVQNNGTREKPPYRNVHHTSKAFETMNIM 59
M S + Y Q + L +Q + N +R +P +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP----------------YL 138
Query: 60 RKQNLLCDVKLIADGVEVAAHKM------VLAA---------CSPYFHAMFISFEESKQE 104
+ + L +++ V + +A C F +++ +
Sbjct: 139 KLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 105 RIVLKGVDPNALKLLIDYVY------SCEIYVTEENVQ----MLLPAAN----LLQLTDV 150
VL+ + L ID + S I + ++Q LL + LL L +V
Sbjct: 196 ETVLEML--QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 151 RDACC--DF-LQCQ-LHPTNCLGIRAFADL----HSCLDLLS---TAENYIELHFAEIVE 199
++A F L C+ L T + F H LD S T + L + ++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLD 312
Query: 200 CEEFLSLSHE------QVLGLISSDKLMVSNEEKVFECVIAWVNYDLESRQKHVAELMEY 253
C L E + L +I+ E + + + W N+ + K + ++E
Sbjct: 313 CRPQ-DLPREVLTTNPRRLSIIA---------ESIRDGLATWDNWKHVNCDK-LTTIIE- 360
Query: 254 VRLPLLSEDYLIQRVEEETVFKNDIRCKDYLIEAL----KY-------HILVKKGEVNKL 302
L +L + + +VF L+ + + L K V K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK- 419
Query: 303 TLVRTPRTKPRQPLRVPKVMLVVGGQAPKAI----RSVECYDFK 342
+ K + +P + L + + V+ Y+
Sbjct: 420 ------QPKEST-ISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Score = 54.9 bits (131), Expect = 1e-07
Identities = 55/342 (16%), Positives = 110/342 (32%), Gaps = 84/342 (24%)
Query: 12 SCLLL---RYAS-QNSLDESSQKQVQNNGTREKPPYRNVHHTSKAF---ETMNIMRKQNL 64
SC +L R+ + L ++ + + H S E +++ K L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS------------LDHHSMTLTPDEVKSLLLK-YL 311
Query: 65 LCDVKLIADGVEVAA-HKMVLAACSPYFHAMFISFEESKQ------ERIV---LKGVDPN 114
C + + EV + L+ + +++ K I+ L ++P
Sbjct: 312 DCRPQDLP--REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 115 ALKLLIDYVYSCEIYVTEENVQMLLPAANLLQL-TDVRDACCDFLQCQLHPTNCLGIRAF 173
+ ++ + +P L + DV + + +LH + + +
Sbjct: 370 EYR---KMFDRLSVF--PPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 174 AD---LHSC-LDLLSTAENYIELHFAEIVECEEFLSLSHEQVLGLISSDKLMVSNEEKVF 229
+ S L+L EN LH IV+ SD L+ ++ F
Sbjct: 423 ESTISIPSIYLELKVKLENEYALH-RSIVDHYNIPKTFD--------SDDLIPPYLDQYF 473
Query: 230 ECVIAWVNYDLESRQKHVAELMEYVRLPLLSEDYLIQRVEEETVFKN----------DIR 279
I + L++ + E M R+ L +L Q++ ++ N ++
Sbjct: 474 YSHIG---HHLKNIEH--PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 280 C-KDY----------LIEALKYHILVKKGEVNKLTLVRTPRT 310
K Y L+ A+ L K E L+ + T
Sbjct: 529 FYKPYICDNDPKYERLVNAIL-DFLPKIEEN----LICSKYT 565
Score = 37.9 bits (87), Expect = 0.019
Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 53/167 (31%)
Query: 14 LLLRYASQNSLDESSQKQVQNNGTREKPPYRN------VHHTSKA--FETMNIMRKQNLL 65
++ Y + D + P HH E M + R +
Sbjct: 449 IVDHYNIPKTFD---------SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VF 497
Query: 66 CD-----VKLIADGVEVAAHKMVLAACSPY-FHAMFISFEESKQERIVLKGVDPNALKLL 119
D K+ D A +L F+ +I + K ER+V +
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV---------NAI 548
Query: 120 IDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQCQLHPTN 166
+D++ E EN+ + D L+ L +
Sbjct: 549 LDFLPKIE-----ENL--------------ICSKYTDLLRIALMAED 576
Score = 36.8 bits (84), Expect = 0.050
Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 57/228 (25%)
Query: 837 SVEAYDPETQT----------WSGV---PDMALCRRNAVLESVASTAEVNLGDEVSCVVK 883
E P T ++ + R L+ A + L K
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPA-----K 151
Query: 884 GISVRGVIAQVGYYK--LKA-TCENEYVEGNKAD----IKVGDEVQAKNSIEVAFKSLYR 936
+ + GV+ G K + C + V+ + + + + +E+ K LY+
Sbjct: 152 NVLIDGVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 937 IAQPLTS-VKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTS--------------A 981
I TS H+ +L ++ ++ R S + A
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAEL----RRLL---KSKPYENCLLVLLNVQNAKAWNA 261
Query: 982 MSQATRTLVYTRF--VIDTVIVCQILKY--EDGELLLTEADEKLHKFS 1025
+ + + L+ TRF V D + + + LT DE
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLL 308
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein,
ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Length = 115
Score = 39.5 bits (93), Expect = 6e-04
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 19/90 (21%)
Query: 465 RILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIG 524
++ G V +TD+G +E+ + VH++E+ ++N + S + ++G
Sbjct: 33 KLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMD---------WTN----KNIHPSKVVNVG 79
Query: 525 DLVVAKILECVTNN----LGQKQIKASLNP 550
D+V +L+ LG KQ KA NP
Sbjct: 80 DVVEVMVLDIDEERRRISLGLKQCKA--NP 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.5 bits (91), Expect = 0.002
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 366 EKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTL 401
EK A+ SL++Y SAP + A ++T+
Sbjct: 18 EK-QALKKLQASLKLYAD-----DSAPAL-AIKATM 46
Score = 36.5 bits (83), Expect = 0.013
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 11/34 (32%)
Query: 834 VRK---SVEAYDPETQTWSGVPDMALCRRNAVLE 864
++K S++ Y ++ P +A+ A +E
Sbjct: 22 LKKLQASLKLYADDS-----APALAI---KATME 47
Score = 32.6 bits (73), Expect = 0.26
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 541 QKQ-IK---ASLN---PHHVNEMYINTTLE 563
+KQ +K ASL + I T+E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 5.0
Identities = 4/17 (23%), Positives = 11/17 (64%), Gaps = 4/17 (23%)
Query: 785 RQCL----SSVEMYSPE 797
+Q L +S+++Y+ +
Sbjct: 19 KQALKKLQASLKLYADD 35
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein,
ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Length = 109
Score = 37.6 bits (88), Expect = 0.003
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 468 GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLV 527
G V + G +EL + + + +E S + + + + + S+GD V
Sbjct: 37 GKVTAVDAKGATVELADGVEGYLRASEASR--------------DRVEDATLVLSVGDEV 82
Query: 528 VAKILE 533
AK
Sbjct: 83 EAKFTG 88
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA
binding protein; NMR {Bacillus subtilis}
Length = 130
Score = 35.5 bits (82), Expect = 0.020
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 464 GRIL-GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFS 522
G + G V + +G + L VHI+E++ + + +++ S
Sbjct: 8 GSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGF--------------VKDINEHLS 53
Query: 523 IGDLVVAKILE 533
+GD V K+L
Sbjct: 54 VGDEVQVKVLA 64
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich,
lectin-like, SPRY, protein transport/signaling protein
complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B
1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Length = 96
Score = 33.2 bits (76), Expect = 0.073
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 68 VKLI-ADGVEVAAHKMVLAACSPYFHAMF---ISFEESKQERIVLKGVDPNALKLLIDYV 123
VKLI +DG E + A S AM F E++ + + + + L + Y
Sbjct: 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYF 61
Query: 124 YSCEIY-----------VTEENVQMLLPAANLL 145
Y + E LL AAN L
Sbjct: 62 TYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 94
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta
sandwich, transcription, transcriptional elongation;
2.70A {Homo sapiens} SCOP: d.42.1.1
Length = 112
Score = 33.2 bits (76), Expect = 0.100
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 16/95 (16%)
Query: 66 CDVKLI-ADGVEVAAHKMVLAACSPYFHAMF---ISFEESKQERIVLKGVDPNALKLLID 121
VKLI +DG E + A S AM F E++ + + + + L +
Sbjct: 17 MYVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCM 75
Query: 122 YVYSCEIY-----------VTEENVQMLLPAANLL 145
Y Y + E LL AAN L
Sbjct: 76 YFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFL 110
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 34.8 bits (80), Expect = 0.20
Identities = 8/90 (8%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 463 DGRILGCVKEITDWGLIIELPNF-LSASVHITEISDVYSDLL---EKYSNGTIEEIPELS 518
G ++ + + G+++ +P F + + + +++ + +Y + +
Sbjct: 891 TGYVIK----VFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKP 946
Query: 519 NLFSIGDLVVAKILECVTNNLGQKQIKASL 548
+ D V ++ + +++ + L
Sbjct: 947 RDVYVFDKVEVQVRSVMDPITSKRKAELLL 976
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA
degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A
{Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5
b.40.4.5 b.40.4.16
Length = 760
Score = 34.3 bits (79), Expect = 0.22
Identities = 8/90 (8%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 463 DGRILGCVKEITDWGLIIELPNF-LSASVHITEISDVYSDLL---EKYSNGTIEEIPELS 518
G ++ + + G+++ +P F + + + +++ + +Y + +
Sbjct: 674 TGYVIK----VFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKP 729
Query: 519 NLFSIGDLVVAKILECVTNNLGQKQIKASL 548
+ D V ++ + +++ + L
Sbjct: 730 RDVYVFDKVEVQVRSVMDPITSKRKAELLL 759
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade
beta-propeller., struct genomics, PSI-2, protein
structure initiative; 2.00A {Methanococcus maripaludis}
Length = 330
Score = 33.1 bits (76), Expect = 0.40
Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 343 TERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE-WSSAPPMEARRSTL 401
TE+W+ + + G + + +P E W+ T
Sbjct: 167 TEKWRFKTNDAIT---SAASIGKDGTIYFG--SDKVYAINPDGTEKWNF--YAGYWTVTR 219
Query: 402 GVAVLNSLIYAVGGFDGS-SGLNS--AEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
+ IY V DG +N E + T K +P+ ++ G +G LY
Sbjct: 220 PAISEDGTIY-VTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLY 278
Query: 459 AENLDGRILG 468
A N DG
Sbjct: 279 AINPDGTEKW 288
Score = 31.2 bits (71), Expect = 1.8
Identities = 26/129 (20%), Positives = 44/129 (34%), Gaps = 12/129 (9%)
Query: 343 TERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLG 402
TE+W+ + +V +Y VG + L +P E +A S
Sbjct: 127 TEKWRFKTKKAIYA--TPIVSEDGTIY-VGSNDNYLYAINPDGTEKWRFKTNDAITSAAS 183
Query: 403 VAVLNSLIYAVGG----FDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLY 458
+ + IY + E ++ W + P + ++ V L+G LY
Sbjct: 184 IGK-DGTIYFGSDKVYAINPDGT----EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLY 238
Query: 459 AENLDGRIL 467
A N DG
Sbjct: 239 AINPDGTEK 247
Score = 30.8 bits (70), Expect = 2.4
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 28/144 (19%)
Query: 336 VECYDFK-TERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE-WSSAPP 393
+ + + +W + + G + +P E W
Sbjct: 42 LYAINTDGSVKWFFKSGEIIE---CRPSIGKDGTIYFGS--DKVYAINPDGTEKWRFDTK 96
Query: 394 MEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVY--DPS-TEKWN-------MIAPMST 443
+ ++Y V DG +Y + TEKW P+ +
Sbjct: 97 KAIVSD---FTIFEDILY-VTSMDGH-------LYAINTDGTEKWRFKTKKAIYATPIVS 145
Query: 444 RRSSVGVGVLNGCLYAENLDGRIL 467
++ VG + LYA N DG
Sbjct: 146 EDGTIYVGSNDNYLYAINPDGTEK 169
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA
complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus
horikoshii} PDB: 1yz6_A
Length = 275
Score = 32.7 bits (74), Expect = 0.54
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 21/100 (21%)
Query: 466 ILGCVKEITDWGLIIELPNF--LSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSI 523
++ VK I ++G +EL + A +HI+E++ + + +
Sbjct: 15 VVATVKRIHNYGAFLELDEYPGKEAFMHISEVAS--------------TWVRNIRDYLKE 60
Query: 524 GDLVVAKILECVTNNLGQKQIKASLNPHHVNEMYINTTLE 563
G VVAK++ ++ L+ V + L+
Sbjct: 61 GQKVVAKVIRVD-----PRKGHIDLSLRRVTQQQRKAKLQ 95
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 33.3 bits (76), Expect = 0.59
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 464 GRIL-GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFS 522
G I+ V+ +I + + V+ + P + ++
Sbjct: 903 GSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLR------------RP-ANEIYE 949
Query: 523 IGDLVVAKILE 533
IG AK++
Sbjct: 950 IGKTYPAKVIY 960
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR
{Saccharomyces cerevisiae} SCOP: d.42.1.1
Length = 99
Score = 30.5 bits (69), Expect = 0.81
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 68 VKLI-ADGVEVAAHKMVLAACSPYFHAMFISFEESKQERIVLKGVDPNALKLLIDYVY 124
V L+ D E + A SP AM + RI LK D + L+ ++Y+
Sbjct: 6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLN 62
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 32.5 bits (74), Expect = 0.91
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 17/95 (17%)
Query: 464 GRIL-GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFS 522
G I+ V+ +I + + V+ + P + ++
Sbjct: 906 GSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLR------------RP-ANEIYE 952
Query: 523 IGDLVVAKILECVTNNLGQKQIKASLNPHHVNEMY 557
IG AK++ + + SL H V + Y
Sbjct: 953 IGKTYPAKVIYI---DYANITAEVSLLDHDVKQQY 984
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 31.9 bits (72), Expect = 0.94
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 375 NGSLRVYDPSTNEWSSAPPMEARRSTLG-----VAVLNSLIYAVGGFDGSSGLNSAEVYD 429
N +L YDP+T E + A LG + + + + + V + + D
Sbjct: 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIV-----VNNSHVIFAID 70
Query: 430 PSTEKWNMIAPM 441
+T K
Sbjct: 71 INTFKEVGRITG 82
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger,
structural genomics, PSI-2, protein structure
initiative; NMR {Methanocaldococcus jannaschii}
Length = 80
Score = 29.5 bits (67), Expect = 0.98
Identities = 10/93 (10%), Positives = 27/93 (29%), Gaps = 23/93 (24%)
Query: 464 GRIL-GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFS 522
G+ G V I +G I L + + ++ +
Sbjct: 6 GKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS------------------LRLENLN 47
Query: 523 IGDLVVAKILECVTN----NLGQKQIKASLNPH 551
+GD ++ + ++ + ++ + H
Sbjct: 48 VGDEIIVQAIDVRPEKREIDFKYIPLEHHHHHH 80
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA,
exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A
{Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Length = 179
Score = 31.1 bits (70), Expect = 0.99
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 466 ILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGD 525
+LG V ++ + +IE+ S S+ +L SN + E+S D
Sbjct: 61 VLGRVVDLRNSIALIEV---SSKKGENRGPSNRGIGILHV-SNVDEGYVKEISEAVGYLD 116
Query: 526 LVVAKILE 533
++ A+++
Sbjct: 117 ILKARVIG 124
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 30.1 bits (68), Expect = 1.1
Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 26/102 (25%)
Query: 464 GRIL-GCVKEITDWGLIIELPNFLSAS-VHITEISDVYSDLLEKYSNGTIEEIPELSNLF 521
I G V +TD+G I++P VH T +S + + S +
Sbjct: 23 YTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSS--------------CRVDKPSEIV 68
Query: 522 SIGDLVVAKILECVTNN------LGQKQIK----ASLNPHHV 553
+GD V K++ N L K + L+P++V
Sbjct: 69 DVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGTGKDLDPNNV 110
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural
GENO structural genomics consortium, SGC, centromere,
nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Length = 59
Score = 28.4 bits (64), Expect = 1.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 794 YSPERNTWEPVKDML 808
+S E NTWEP K++
Sbjct: 28 FSEEHNTWEPEKNLD 42
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo
sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Length = 308
Score = 31.1 bits (70), Expect = 1.8
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 16/70 (22%)
Query: 466 ILGCVKEITDWGLIIELPNF--LSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSI 523
++ V+ I + G + L + + +H++E+ S I I + L I
Sbjct: 17 VMVNVRSIQEMGAYVSLLEYNNIEGMIHLSEL-----------SRRRIRSI---NKLIRI 62
Query: 524 GDLVVAKILE 533
G K++
Sbjct: 63 GRNECVKVIR 72
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Saccharomyces
cerevisiae} PDB: 2a1a_A* 1q46_A
Length = 175
Score = 30.1 bits (68), Expect = 2.1
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 16/70 (22%)
Query: 466 ILGCVKEITDWGLIIELPNF--LSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSI 523
++ V++I + G ++L + + + ++E+S I + L +
Sbjct: 19 VMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSR--------------RRIRSIQKLIRV 64
Query: 524 GDLVVAKILE 533
G VA +L
Sbjct: 65 GKNDVAVVLR 74
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 30.7 bits (69), Expect = 2.3
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 466 ILGCVKEITDWGLIIELPNF--LSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSI 523
++ VK++ D+G + L + L A + +E+S + + + ++
Sbjct: 15 LIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSS--------------KWVKNIRDVLKE 60
Query: 524 GDLVVAKILE 533
V+ K++
Sbjct: 61 NRKVIVKVIR 70
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical
domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Length = 182
Score = 30.2 bits (68), Expect = 2.7
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 16/70 (22%)
Query: 466 ILGCVKEITDWGLIIELPNF--LSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSI 523
++ V+ I + G + L + + + ++E+S I ++ L I
Sbjct: 19 VMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSR--------------RRIRSINKLIRI 64
Query: 524 GDLVVAKILE 533
G ++
Sbjct: 65 GRNECVVVIR 74
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail,
choromatin organization modifier, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Length = 64
Score = 27.7 bits (62), Expect = 3.1
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 794 YSPERNTWEPVKDML 808
+S + +TWEP +++L
Sbjct: 35 WSQKYSTWEPEENIL 49
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin
regulator, nucleus, repressor, transcription,
transcription regulation; NMR {Homo sapiens} PDB:
2l12_A* 2l1b_A*
Length = 73
Score = 27.8 bits (62), Expect = 3.1
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 794 YSPERNTWEPVKDML 808
+ P+ +TWEP + +L
Sbjct: 46 WPPKYSTWEPEEHIL 60
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide
complex, silencing, cell cycle, chromosome partition,
DNA-binding, nucleus; HET: M3L; 2.20A
{Schizosaccharomyces pombe}
Length = 61
Score = 27.7 bits (62), Expect = 3.2
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 794 YSPERNTWEPVKDML 808
Y NTWEP +++
Sbjct: 33 YDWYDNTWEPEQNLF 47
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2,
structural genomics, structural genomics consortium,
SGC, chromatin regulator, D binding, nucleus; HET: M3L;
1.50A {Homo sapiens} PDB: 2k28_A 3i8z_A
Length = 54
Score = 27.2 bits (61), Expect = 3.3
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 794 YSPERNTWEPVKDML 808
+S + N+WEP +++L
Sbjct: 28 WSSKHNSWEPEENIL 42
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane
protein folding, negative, BAMA, protein binding; 1.65A
{Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A
2yh3_A
Length = 376
Score = 30.2 bits (68), Expect = 3.3
Identities = 10/89 (11%), Positives = 19/89 (21%), Gaps = 10/89 (11%)
Query: 335 SVECYDFKT--ERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNE--WSS 390
V W R V + + VG G L +
Sbjct: 288 RVMALTIDGGVTLWTQ--SDLLHRLLTSPVLYNGNLV-VGDSEGYLHWINVEDGRFVAQQ 344
Query: 391 APPMEARRSTLGVAVLNSLIYAVGGFDGS 419
++ + + + DG+
Sbjct: 345 KVDSSGFQTEP--VAADGKLL-IQAKDGT 370
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine
methylation, trimethyllysine, cation-PI, chromo,
structural protein; HET: M3L; 1.76A {Drosophila
melanogaster} SCOP: b.34.13.2
Length = 72
Score = 27.8 bits (62), Expect = 3.6
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 794 YSPERNTWEPVKDML 808
++ NTWEP ++L
Sbjct: 45 WNQRYNTWEPEVNIL 59
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A
{Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB:
1h9k_A 1h9j_A
Length = 145
Score = 29.0 bits (65), Expect = 3.6
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 606 CMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANI 655
+ I+ A + + + L ++ ++ V+ L L PG A I
Sbjct: 86 GTVKTIETGAVNAEVTLALQGGTEITS-MVTKEAVAELGLKPGASASAVI 134
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural
genomics consortium, S repeat, nucleus, cell cycle;
2.05A {Homo sapiens} PDB: 3r93_A* 3svm_A* 3qo2_A*
Length = 62
Score = 27.3 bits (61), Expect = 4.2
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 794 YSPERNTWEPVKDML 808
Y+ + +TWEP +
Sbjct: 29 YTSDDDTWEPEIHLE 43
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller,
assembly FAC; 1.50A {Thermosynechococcus elongatus}
Length = 327
Score = 30.0 bits (67), Expect = 4.4
Identities = 9/75 (12%), Positives = 21/75 (28%)
Query: 344 ERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGV 403
+ WQ++ + R + AV ++P W +RR
Sbjct: 152 KNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMG 211
Query: 404 AVLNSLIYAVGGFDG 418
+ ++ +
Sbjct: 212 FTPDGRLWMIVNGGK 226
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 29.7 bits (67), Expect = 4.9
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 5/70 (7%)
Query: 367 KVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL--NSLIYAVGGFDGSSGLNS 424
V F +L + E + S V + + V G + +
Sbjct: 53 NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHP---FN 109
Query: 425 AEVYDPSTEK 434
+ Y K
Sbjct: 110 MQSYSFLKNK 119
>2b94_A Purine nucleoside phosphorylase; SGPP, structural genomics, PSI,
protein structure initiative UDP, ontario/toronto SGC;
1.85A {Plasmodium knowlesi} PDB: 3emv_A 1sq6_A 2bsx_A*
3enz_A*
Length = 267
Score = 29.1 bits (65), Expect = 6.8
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 275 KNDIRCKDYLIEALKYHILVKKGEVNKLTLVRTPRTKPRQPLRVPKV 321
+ ++ + ++ E ++ HI + + + LV P RV KV
Sbjct: 14 RENLYFQGHMEEEMQRHIKLTPSQTTPVVLV------VGDPGRVDKV 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 15,497,245
Number of extensions: 949183
Number of successful extensions: 2116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1906
Number of HSP's successfully gapped: 179
Length of query: 1026
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 923
Effective length of database: 3,825,930
Effective search space: 3531333390
Effective search space used: 3531333390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)