RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9769
(1026 letters)
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 110 bits (276), Expect = 4e-29
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFIS-FEES 101
+ H S +N +R +++L DV ++ + AHK VL ACS F+++F + +
Sbjct: 3 IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRN 62
Query: 102 KQERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ ++P +L+D++Y+ + + E N+ ++ A LQ+ V D C F++
Sbjct: 63 LSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 120
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 110 bits (275), Expect = 5e-29
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 43 YRNVHHTSKAFETMNIMRKQNLLCDVKLIADGVEVAAHKMVLAACSPYFHAMFISFEESK 102
+N H + N MR LCDV ++ D E AH+ VLA S F +F
Sbjct: 6 LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN---- 61
Query: 103 QERIVLKGVDPNALKLLIDYVYSCEIYVTEENVQMLLPAANLLQLTDVRDACCDFLQ 159
+ L + P + +++Y Y+ + E++ LL AA +L++ + + C L+
Sbjct: 62 SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 96.9 bits (239), Expect = 2e-22
Identities = 52/138 (37%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 320 KVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN---- 375
+ V G + S ECY + W+ + M T R AG+ LH +YA GG++
Sbjct: 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209
Query: 376 -GSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEK 434
S+ YD T W+ PM+ RRS LG+ V IY +GG+DG + L+S E YDP T+
Sbjct: 210 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269
Query: 435 WNMIAPMSTRRSSVGVGV 452
W+ + M++ RS VGV V
Sbjct: 270 WSEVTRMTSGRSGVGVAV 287
Score = 77.3 bits (188), Expect = 7e-16
Identities = 16/72 (22%), Positives = 31/72 (43%)
Query: 317 RVPKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG 376
+V +++ GG +++ +E Y+ W +A++ R + +YAVGG N
Sbjct: 2 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 377 SLRVYDPSTNEW 388
S S+
Sbjct: 62 SPDGNTDSSALD 73
Score = 73.4 bits (178), Expect = 1e-14
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 319 PKVMLVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-- 376
+ G + SVE YD +TE W VA M RR G+ ++Y +GG++G
Sbjct: 196 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHT 255
Query: 377 ---SLRVYDPSTNEWSSAPPMEARRSTLGVAV 405
S+ YDP T+ WS M + RS +GVAV
Sbjct: 256 FLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 71.1 bits (172), Expect = 7e-14
Identities = 35/85 (41%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 785 RQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRKSVEAYDPE 844
+ L+SVE Y E TW V M ++RS G+ V +Y +GG+DG SVE YDP+
Sbjct: 207 QDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPD 266
Query: 845 TQTWSGVPDMALCRRNAVLESVAST 869
T TWS V M R VA T
Sbjct: 267 TDTWSEVTRMTSGRSGV---GVAVT 288
Score = 63.8 bits (153), Expect = 2e-11
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 406 LNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYA 459
+ LIY GG+ S L+ E Y+PS W +A + RS + V+ G LYA
Sbjct: 3 VGRLIYTAGGYFRQS-LSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYA 55
Score = 63.0 bits (151), Expect = 4e-11
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 366 EKVYAVGGFNG----SLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGS 419
+Y GG+ L Y+PS W ++ RS L V+ L+YAVGG + S
Sbjct: 5 RLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNS 62
Score = 61.5 bits (147), Expect = 1e-10
Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
GGY RQ LS +E Y+P TW + D+ RSG V+ +LYAVGG +
Sbjct: 10 AGGYF---RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGN 66
Query: 837 SVEAYDPETQTWSGVPDMALCRRN 860
+ + +
Sbjct: 67 TDSSALDCYNPMTNQWSPCAPMSV 90
Score = 52.6 bits (124), Expect = 1e-07
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGV 818
+GGYDG L SVE Y P+ +TW V M RSG GV V
Sbjct: 248 LGGYDG--HTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 51.8 bits (122), Expect = 2e-07
Identities = 55/127 (43%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 338 CYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFN-----GSLRVYDPSTNEWSSAP 392
Y+ + + W VA M TRR G+ L+ +YAVGGF+ S Y P NEW
Sbjct: 121 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMIT 180
Query: 393 PMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVGVGV 452
M RS GV VL++ IYA GG+DG LNS E YD TE W +APM RRS++G+ V
Sbjct: 181 AMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 240
Query: 453 LNGCLYA 459
G +Y
Sbjct: 241 HQGRIYV 247
Score = 47.2 bits (110), Expect = 4e-06
Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 819 LDNILYAVGGHDGPLVRKSVEAYDPETQTWSGVPDMALCRRNAVLESV 866
+ ++Y GG+ + +EAY+P TW + D+ + R V
Sbjct: 3 VGRLIYTAGGYFRQSLS-YLEAYNPSNGTWLRLADLQVPRSGLAGCVV 49
Score = 32.6 bits (72), Expect = 0.20
Identities = 41/85 (48%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 777 VGGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVLDNILYAVGGHDGPLVRK 836
VGG+D L+S E Y PERN W + M RSGAGV VL N +YA GG+DG
Sbjct: 154 VGGFD--GTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLN 211
Query: 837 SVEAYDPETQTWSGVPDMALCRRNA 861
SVE YD ET+TW+ V M R
Sbjct: 212 SVERYDVETETWTFVAPMKHRRSAL 236
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 73.3 bits (178), Expect = 3e-14
Identities = 21/119 (17%), Positives = 31/119 (26%), Gaps = 18/119 (15%)
Query: 345 RWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNG-----------SLRVYDPSTNEWSSAPP 393
RW ++P A + +V + +DPST S
Sbjct: 10 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV 69
Query: 394 MEARRSTL---GVAVLNSLIYAVGGFDGSSGLNSAEVYDPSTEKWNMIAPMSTRRSSVG 449
+ N I GG D +YD S++ W M R
Sbjct: 70 TVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQS 124
Score = 71.8 bits (174), Expect = 1e-13
Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 17/110 (15%)
Query: 338 CYDFKTERWQSVAEMPTRRCRAGLVF-LHEKVYAVGGFNG-----------SLRVYDPST 385
+ + R V + GG + +Y P
Sbjct: 271 EPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 330
Query: 386 NEWSSAPPMEARRSTLGVAVL--NSLIYAVGGF---DGSSGLNSAEVYDP 430
+ + P R +++L + ++ GG D ++ A+++ P
Sbjct: 331 DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP 380
Score = 69.1 bits (167), Expect = 9e-13
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 383 PSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGS------SGLNSAEVYDPSTEKWN 436
P W + + + + + + G+ +DPST +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 437 MIAPMSTRRSSVGVGVL---NGCLYA 459
T+ G+ NG +
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVV 91
Score = 67.5 bits (163), Expect = 3e-12
Identities = 25/162 (15%), Positives = 46/162 (28%), Gaps = 36/162 (22%)
Query: 335 SVECYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGG--------------------- 373
Y + +S + + R A V
Sbjct: 204 MNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTN 263
Query: 374 -FNGSLRVYDPSTNEWSSAPPM-EARRSTLGVAVLNSLIYAVGG------FDGSSGLNSA 425
+L S N ++ + AR V + + + GG F+ S+ + +
Sbjct: 264 AHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTP 323
Query: 426 EVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRIL 467
E+Y P + + P S R + +L DGR+
Sbjct: 324 EIYVPEQDTFYKQNPNSIVRVYHSISLL-------LPDGRVF 358
Score = 63.3 bits (152), Expect = 5e-11
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 13/143 (9%)
Query: 322 MLVVGGQAPKAI-------RSVECYDFKTERWQSVAEMPTRR---CRAGLVFLHEKVYAV 371
+L+ A +D T T+ C + + ++
Sbjct: 33 VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVT 92
Query: 372 GGFNGS-LRVYDPSTNEWSSAP--PMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEVY 428
GG + +YD S++ W P + + + G + G + EVY
Sbjct: 93 GGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152
Query: 429 DPSTEKWNMIAPMSTRRSSVGVG 451
PS++ W +
Sbjct: 153 SPSSKTWTSLPNAKVNPMLTADK 175
Score = 58.7 bits (140), Expect = 2e-09
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 777 VGGYD----GISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVL--DNILYAVGG-- 828
GG + + E+Y PE++T+ R + +L D ++ GG
Sbjct: 305 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGL 364
Query: 829 -HDGPLVRKSVEAYDP 843
D + + P
Sbjct: 365 CGDCTTNHFDAQIFTP 380
Score = 52.9 bits (125), Expect = 1e-07
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 17/79 (21%)
Query: 322 MLVVGGQA-------PKAIRSVECYDFKTERWQSVAEMPTRRCR--AGLVFLHEKVYAVG 372
+ GGQ + + E Y + + + R L+ +V+ G
Sbjct: 302 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGG 361
Query: 373 GFNG--------SLRVYDP 383
G +++ P
Sbjct: 362 GGLCGDCTTNHFDAQIFTP 380
Score = 52.5 bits (124), Expect = 1e-07
Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 6/70 (8%)
Query: 796 PERNTWEPVKDMLYKRSGAGVGVLDNILYAVGG------HDGPLVRKSVEAYDPETQTWS 849
P W P D+ + A + + P ++DP T S
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 850 GVPDMALCRR 859
Sbjct: 66 DRTVTVTKHD 75
Score = 51.7 bits (122), Expect = 2e-07
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 11/92 (11%)
Query: 777 VGGYD----GISRQCLSSVEMYSPERNTWEPVKDMLYKRSGAGVGVL---DNILYAVGGH 829
Y G S ++ + P + K G+ + + GG+
Sbjct: 36 WSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN 95
Query: 830 DGPLVRKSVEAYDPETQTWSGVPDMALCRRNA 861
D K YD + +W PDM + R
Sbjct: 96 DA----KKTSLYDSSSDSWIPGPDMQVARGYQ 123
Score = 46.7 bits (109), Expect = 9e-06
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 10/96 (10%)
Query: 778 GGYDGISRQCLSSVEMYSPERNTWEPVKDMLYKRSG-AGVGVLDNILYAVGGH------D 830
D + + ++ NT + + R+ V + D + GG +
Sbjct: 256 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 315
Query: 831 GPLVRKSVEAYDPETQTWSGVPDMALCRRN---AVL 863
+ E Y PE T+ ++ R ++L
Sbjct: 316 DSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLL 351
Score = 42.9 bits (99), Expect = 2e-04
Identities = 17/166 (10%), Positives = 36/166 (21%), Gaps = 25/166 (15%)
Query: 326 GGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAG--------------LVFLHEKVYAV 371
++ E Y ++ W S+ + V+
Sbjct: 139 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQA 198
Query: 372 GGFNGSLRVYDPSTNEWSSAPPMEARRSTL-----GVAVLNSLI-----YAVGGFDGSSG 421
G Y + + SA ++ R G AV+ + G D
Sbjct: 199 GPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 258
Query: 422 LNSAEVYDPSTEKWNMIAPMSTRRSSVGVGVLNGCLYAENLDGRIL 467
+ + + + + + DG
Sbjct: 259 DATTNAHIITLGEPGTSPNTVFASNGLYFAR-TFHTSVVLPDGSTF 303
Score = 41.7 bits (96), Expect = 3e-04
Identities = 17/143 (11%), Positives = 33/143 (23%), Gaps = 9/143 (6%)
Query: 749 TEAVNQNCSRPSFKREKSSRNAELSTIGVGGYDGISRQCLSSVEMYSPERNTWEPVKDML 808
+++ + +SS + G + E+YSP TW + +
Sbjct: 107 SDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAK 166
Query: 809 YK----RSGAGVGVLDNILYAVGGHDGPLV-----RKSVEAYDPETQTWSGVPDMALCRR 859
G+ DN + G G + Y + R
Sbjct: 167 VNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 226
Query: 860 NAVLESVASTAEVNLGDEVSCVV 882
A + +
Sbjct: 227 VAPDAMCGNAVMYDAVKGKILTF 249
>d1e3pa2 b.40.4.5 (A:656-717) S1 RNA-binding domain of
polyribonucleotide phosphorylase, PNPase {Streptomyces
antibioticus [TaxId: 1890]}
Length = 62
Score = 45.9 bits (109), Expect = 4e-07
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 468 GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLV 527
G V + T +G + L +HI++I + + + + ++ +G V
Sbjct: 1 GSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGG----------KRVENVEDVLGVGQKV 50
Query: 528 VAKILE 533
+I E
Sbjct: 51 QVEIAE 56
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 38.2 bits (87), Expect = 0.004
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 367 KVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVL--NSLIYAVGGFDGSSGLNS 424
+ V + +L V D +++ + M + + N Y +
Sbjct: 9 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY-----GD 63
Query: 425 AEVYDPSTEKWNMIAPMSTRRSSVGVGV 452
D T K A +S+ VG +
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSM 91
Score = 31.6 bits (70), Expect = 0.41
Identities = 17/164 (10%), Positives = 44/164 (26%), Gaps = 12/164 (7%)
Query: 323 LVVGGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL--HEKVYAVGGFNGSLRV 380
++V ++ D ++ MP + + + Y + G +
Sbjct: 11 MIVTNYP----NNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 381 YDPSTNEWSSAPPMEARRSTLGVAVLNSLIY------AVGGFDGSSGLNSAEVYDPSTEK 434
D T + + + + +G ++ + I + V P E
Sbjct: 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 435 WNMIAPMSTRRSSVGVGVLNGCLYAENLDGRILGCVKEITDWGL 478
++ + + L DG + +I +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDV 170
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide
phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Length = 76
Score = 34.7 bits (80), Expect = 0.005
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 17/79 (21%)
Query: 468 GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLV 527
G V I D+G + + VHI++I+D + ++++ +G V
Sbjct: 11 GKVTRIVDFGAFVAIGGGKEGLVHISQIADKR--------------VEKVTDYLQMGQEV 56
Query: 528 VAKILECVTNN---LGQKQ 543
K+LE L K+
Sbjct: 57 PVKVLEVDRQGRIRLSIKE 75
Score = 32.0 bits (73), Expect = 0.045
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 870 AEVNLGDEVSCVVKGISVRGVIAQVGYYKL----KATCENEYVEGNKADIKVGDEVQAK 924
AE+ +G + V I G +G K + ++ VE +++G EV K
Sbjct: 1 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVK 59
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 94
Score = 34.9 bits (80), Expect = 0.006
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 936 RIAQPLTSVKHTKPGRLVWGVLKEKMPGGVRVEFDGDISGVFPTSAMSQATRTLVYTRFV 995
+ + S+K KPG ++ GV+ G V+ G+ SA+S+ Y
Sbjct: 5 EFQEGVESLKDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVK 64
Query: 996 IDTVIVCQILKY--EDGELLLT 1015
++ ++++ + L+
Sbjct: 65 AGDIVKVKVMEVDIPRNRVGLS 86
Score = 30.6 bits (69), Expect = 0.18
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 466 ILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGD 525
+ G V +T++G +++ VHI+ +S+ + + GD
Sbjct: 22 LEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEV--------------VKAGD 67
Query: 526 LVVAKILECVTNNLGQKQIKASL 548
+V K++E ++ + ++ S+
Sbjct: 68 IVKVKVMEV---DIPRNRVGLSM 87
>d2z0sa1 b.40.4.5 (A:60-147) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId:
56636]}
Length = 88
Score = 34.5 bits (79), Expect = 0.008
Identities = 7/69 (10%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 466 ILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGD 525
++G ++ + +++ + A + + + + + ++ +L +GD
Sbjct: 11 VIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFN----------PAVDDMQSLLKVGD 60
Query: 526 LVVAKILEC 534
+ AK++
Sbjct: 61 YIKAKVVAF 69
>d2je6i1 b.40.4.5 (I:66-152) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Sulfolobus solfataricus
[TaxId: 2287]}
Length = 87
Score = 33.8 bits (77), Expect = 0.013
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 466 ILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGD 525
++G V+++ +G ++++ A + + + I +L +GD
Sbjct: 11 VIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRS-----------INVGEDLRRYLDVGD 59
Query: 526 LVVAKILE 533
V+A+I
Sbjct: 60 YVIARIEN 67
>d1go3e1 b.40.4.5 (E:79-184) C-terminal domain of RNA polymerase II
subunit RBP7 (RpoE) {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 106
Score = 30.4 bits (68), Expect = 0.32
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 468 GCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGDLV 527
G V ++ ++G + L L +H+++I D D + E + IGD V
Sbjct: 9 GEVVDVVEFGSFVRL-GPLDGLIHVSQIMD---DYVSYDPKREAIIGKETGKVLEIGDYV 64
Query: 528 VAKILECVTNNLGQKQIKASL 548
A+I+ ++ K +L
Sbjct: 65 RARIVAISLKAERKRGSKIAL 85
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 30.6 bits (67), Expect = 0.88
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 368 VYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSAEV 427
Y + ++ V D ++N+ ++ P+ + ++ + +Y N +
Sbjct: 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHS-----NDVSI 58
Query: 428 YDPSTEKWNMIAPM 441
D +T P
Sbjct: 59 IDTATNNVIATVPA 72
Score = 29.5 bits (64), Expect = 2.2
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 338 CYDFKTERWQSVAEMPTRRCRAGLVFLH--EKVYAVGGFNGSLRVYDPSTNE 387
T + A +P AG+ +KVY F ++ V D +TN
Sbjct: 226 VSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT 277
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 30.6 bits (67), Expect = 1.1
Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 338 CYDFKTERWQSVAEMPTRRCRAGLVFLHEKVYAVGGFNGSLRVYDPSTNEWSSAPPMEAR 397
+ + A F V G +Y+ + + A ++
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDA 324
Query: 398 RSTLGVAVLNSLIYAVGGFDGSSGLNSAEVYD 429
V + A DG S L E+ D
Sbjct: 325 DQIWSVNFKGKTLVAAVEKDGQSFL---EILD 353
>d1wi5a_ b.40.4.5 (A:) S1-domain of RRP5 protein homolog (PDCD11,
KIAA0185) {Human (Homo sapiens) [TaxId: 9606]}
Length = 119
Score = 28.9 bits (64), Expect = 1.1
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 553 VNEMYINTTLETGLVLPACVHSKEDHGYLLDVGVKNTRAFIKYDSVILGQIVTCMISKIK 612
VN + L+ G++L V S EDHGYL+D+GV TRAF+ +K+K
Sbjct: 10 VNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLK 69
Query: 613 VAASMSILEVTLDEELIRSANRLSPSQVS 641
V ++ + + + + S+VS
Sbjct: 70 VGQYLNCIVEKVKGNGGVVSLSVGHSEVS 98
>d1fr3a_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
{Sporomusa ovata [TaxId: 2378]}
Length = 67
Score = 27.3 bits (61), Expect = 1.7
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 603 IVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANI 655
+ + +I M+ + + + + ++ V+ L+LVPG KV A +
Sbjct: 8 KLEATVKEIVKGTVMAKIVMDYKGTELVA--AITIDSVADLDLVPGDKVTALV 58
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 29.6 bits (65), Expect = 1.9
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 5/65 (7%)
Query: 326 GGQAPKAIRSVECYDFKTERWQSVAEMPTRRCRAGLVFL---HEKVYAVGGFNGSLRVYD 382
A + Q+ + ++ YA L +YD
Sbjct: 286 SRSCLAAAENTSSVTASV--GQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD 343
Query: 383 PSTNE 387
++++
Sbjct: 344 AASDQ 348
>d2nn6g1 b.40.4.5 (G:107-194) S1-domain of exosome component 3
(RRP40) {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.5 bits (61), Expect = 2.0
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 15/68 (22%)
Query: 466 ILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGD 525
++G V + +++ AS+ T P +GD
Sbjct: 10 VIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-----------GATKRNRPN----VQVGD 54
Query: 526 LVVAKILE 533
L+ + +
Sbjct: 55 LIYGQFVV 62
>d1h9ra1 b.40.6.2 (A:123-199) C-terminal domain of
molybdate-dependent transcriptional regulator ModE
{Escherichia coli [TaxId: 562]}
Length = 77
Score = 27.4 bits (61), Expect = 2.1
Identities = 8/53 (15%), Positives = 18/53 (33%)
Query: 603 IVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANI 655
I+ ++V L + R ++ + L L G +V+ +
Sbjct: 8 QWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILL 60
>d1gff1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage G4
[TaxId: 10843]}
Length = 417
Score = 29.4 bits (66), Expect = 2.1
Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 15/70 (21%)
Query: 919 DEVQAKNSIEVAFKSLYRIAQPLTSVKHTK---------PGRLVWGVLKEKMPGGVRVEF 969
V A +S E R++ + P R ++G
Sbjct: 24 TPVVAGDSFECDMVGAIRLSPLRRGLAVDSRVDIFSFYIPHRHIYGQQWINFMK------ 77
Query: 970 DGDISGVFPT 979
DG + P
Sbjct: 78 DGVNASPLPP 87
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 29.4 bits (64), Expect = 2.5
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 370 AVGGFNGSLRVYDPSTNEWSSAPPMEARRST-LGVAVL-NSLIYAVGGFDGS 419
A+ N + +Y+ S N+W ++ GV +S G D +
Sbjct: 23 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRN 74
>d1k55a_ e.3.1.1 (A:) Class D beta-lactamase {Pseudomonas
aeruginosa, OXA-10 [TaxId: 287]}
Length = 245
Score = 28.6 bits (63), Expect = 3.6
Identities = 8/72 (11%), Positives = 18/72 (25%)
Query: 366 EKVYAVGGFNGSLRVYDPSTNEWSSAPPMEARRSTLGVAVLNSLIYAVGGFDGSSGLNSA 425
K ++ NG + S+ ++ A + L + +G G
Sbjct: 9 NKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFKIPNAIIGLETGVIKNEHQ 68
Query: 426 EVYDPSTEKWNM 437
+
Sbjct: 69 VFKWDGKPRAMK 80
>d1hc1a1 a.85.1.1 (A:5-135) Hemocyanin, N-terminal domain {Spiny
lobster (Panulirus interruptus) [TaxId: 6735]}
Length = 131
Score = 27.8 bits (62), Expect = 3.8
Identities = 8/66 (12%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 239 DLESRQKHVAELMEYVRLPLLSEDY--LIQR---VEEETVFKNDIRCKDYLIEALKYHIL 293
+Q+ + L++ + P D + + + + +++ + + L++ L H L
Sbjct: 2 GNAQKQQDINHLLDKIYEPTKYPDLKDIAENFNPLGDTSIYNDHGAAVETLMKELNDHRL 61
Query: 294 VKKGEV 299
+++
Sbjct: 62 LEQRHW 67
>d1guta_ b.40.6.1 (A:) Molybdate/tungstate binding protein MOP
{Clostridium pasteurianum, MOP II [TaxId: 1501]}
Length = 67
Score = 25.8 bits (57), Expect = 5.4
Identities = 6/53 (11%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 603 IVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANI 655
+ + +K + + + + ++ +S V L + G ++ A +
Sbjct: 7 QLKGKVVGLKKGVVTAEVVLEIAGGNKITS-IISLDSVEELGVKEGAELTAVV 58
>d1h9ma1 b.40.6.2 (A:1-73) Cytoplasmic molybdate-binding protein
ModG {Azotobacter vinelandii [TaxId: 354]}
Length = 73
Score = 25.8 bits (57), Expect = 5.8
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 603 IVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANI 655
+ +S +K A + +++ L +A ++ L L G +V+A +
Sbjct: 8 VFKGTVSALKEGAVNAEVDILLGGGDKLAA-VVTLESARSLQLAAGKEVVAVV 59
>d1h9ma2 b.40.6.2 (A:74-141) Cytoplasmic molybdate-binding protein
ModG {Azotobacter vinelandii [TaxId: 354]}
Length = 68
Score = 25.8 bits (57), Expect = 5.9
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 603 IVTCMISKIKVAASMSILEVTLDEELIRSANRLSPSQVSLLNLVPGMKVIANI 655
I+T + I+ A + + + L ++ ++ V+ L L PG A I
Sbjct: 7 ILTGTVKTIETGAVNAEVTLALQGGTEITS-MVTKEAVAELGLKPGASASAVI 58
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex
RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 83
Score = 25.7 bits (56), Expect = 7.7
Identities = 11/69 (15%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 466 ILGCVKEITDWGLIIELPNFLSASVHITEISDVYSDLLEKYSNGTIEEIPELSNLFSIGD 525
++G ++E+ G +++ + A + ++E ++ + + + IGD
Sbjct: 9 VIGIIREVAANGWAVDIYSPYQAFLPVSENPEMK-------------PNKKPNEVLDIGD 55
Query: 526 LVVAKILEC 534
++AK+L
Sbjct: 56 AIIAKVLNI 64
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 234
Score = 27.0 bits (59), Expect = 9.7
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 290 YHILVKKGEVNKLTLVRTPRTKPRQPLRVPKV 321
HIL KKGEV + LV P R +
Sbjct: 2 VHILAKKGEVAERVLV------VGDPGRARLL 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,727,033
Number of extensions: 174412
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 54
Length of query: 1026
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 932
Effective length of database: 1,116,976
Effective search space: 1041021632
Effective search space used: 1041021632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)