BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy977
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VTN|C Chain C, Co-Crystal Structure Of The Hnf-3FORK HEAD DNA-Recognition
Motif Resembles Histone H5
Length = 102
Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 63/88 (71%), Positives = 75/88 (85%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYISL MAI +P KML LS+IY++I D FPYYR N QRWQNS+RH+LSFNDCFV
Sbjct: 3 KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENG 100
K+ R PD+PGKG+YWALHP++ +MFENG
Sbjct: 63 KVARSPDKPGKGSYWALHPSSGNMFENG 90
>pdb|1D5V|A Chain A, Solution Structure Of The Forkhead Domain Of The
Adipocyte- Transcription Factor Freac-11 (S12)
Length = 94
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 71/89 (79%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI ++PEK + L+ IY+FI DRFP+YR N Q WQNS+RHNLS N+CFV
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGS 101
K+PR +PGKG+YW L P + +MFENGS
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGS 92
>pdb|2HFH|A Chain A, The Nmr Structures Of A Winged Helix Protein: Genesis, 20
Structures
Length = 109
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 66/89 (74%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGS 101
KIPR P PGKG YW L P + DMF+NGS
Sbjct: 63 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 91
>pdb|2HDC|A Chain A, Structure Of Transcription Factor GenesisDNA COMPLEX
Length = 97
Score = 128 bits (321), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 66/89 (74%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGS 101
KIPR P PGKG YW L P + DMF+NGS
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGS 90
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor
1 Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor
1 Bound To Dna
Length = 111
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNLS N
Sbjct: 14 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 73
Query: 71 FVKIPRRPDRPGKGAYWALHPAA 93
F+K+PR + PGKG++W + PA+
Sbjct: 74 FIKVPRSQEEPGKGSFWRIDPAS 96
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 55/83 (66%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNLS N
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 71 FVKIPRRPDRPGKGAYWALHPAA 93
F+K+PR + PGKG++W + PA+
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDPAS 83
>pdb|2A3S|A Chain A, Solution Structure And Dynamics Of Dna-Binding Domain Of
Myocyte Nuclear Factor
pdb|2D2W|A Chain A, Solution Structure And Dynamics Of The Dna-Binding
Domain Of Myocyte Nuclear Factor
Length = 101
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 55/83 (66%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
+ KPPYSY L AI S+ ++ L LS IY I +PYYR + WQNS+RHNLS N
Sbjct: 1 ESKPPYSYAQLIVQAISSAQDRQLTLSGIYAHITKHYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 71 FVKIPRRPDRPGKGAYWALHPAA 93
F+K+PR + PGKG++W + PA+
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDPAS 83
>pdb|1KQ8|A Chain A, Solution Structure Of Winged Helix Protein Hfh-1
Length = 100
Score = 92.4 bits (228), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 1/89 (1%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI S L L++I ++ +FP++R + W+NS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 73 KIPRRPDRP-GKGAYWALHPAALDMFENG 100
K+ R P RP GK YW L+P + F +G
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADG 90
>pdb|3G73|A Chain A, Structure Of The Foxm1 Dna Binding
pdb|3G73|B Chain B, Structure Of The Foxm1 Dna Binding
Length = 142
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQ-RWQNSLRHNLSFNDC 70
++PPYSY+++ AI S+ K + L DIY +I D FPY++ + W+NS+RHNLS +D
Sbjct: 17 ERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDM 76
Query: 71 FVKIPRRPDRPGKGAYWALHPAA 93
FV R GK ++W +HP+A
Sbjct: 77 FV---RETSANGKVSFWTIHPSA 96
>pdb|2KIU|A Chain A, Solution Structure And Backbone Dynamics Of The
Dna-Binding Domain Of Foxp1: Insight Into Its Domain
Swapping
Length = 87
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y SL AI SPEK L L++IY + FPY+RRN W+N++RHNLS + FV
Sbjct: 4 RPPFTYASLIRQAILESPEKQLTLNEIYNWFTRMFPYFRRNAATWKNAVRHNLSLHKYFV 63
Query: 73 KIPRRPDRPGKGAYWAL 89
++ KGA W +
Sbjct: 64 RVENV-----KGAVWTV 75
>pdb|2A07|F Chain F, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|G Chain G, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|H Chain H, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|I Chain I, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|J Chain J, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2A07|K Chain K, Crystal Structure Of Foxp2 Bound Specifically To Dna.
pdb|2AS5|F Chain F, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna.
pdb|2AS5|G Chain G, Structure Of The Dna Binding Domains Of Nfat And Foxp2
Bound Specifically To Dna
Length = 93
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI S ++ L L++IY + F Y+RRN W+N++RHNLS + CFV
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62
Query: 73 KIPRRPDRPGKGAYWAL 89
++ KGA W +
Sbjct: 63 RVENV-----KGAVWTV 74
>pdb|3QRF|F Chain F, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|G Chain G, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|H Chain H, Structure Of A Domain-Swapped Foxp3 Dimer
pdb|3QRF|I Chain I, Structure Of A Domain-Swapped Foxp3 Dimer
Length = 82
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 5/77 (6%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI +PEK L++IY + F ++R + W+N++RHNLS + CFV
Sbjct: 2 RPPFTYATLIRWAILEAPEKQRTLNEIYHWFTRMFAFFRNHPATWKNAIRHNLSLHKCFV 61
Query: 73 KIPRRPDRPGKGAYWAL 89
++ KGA W +
Sbjct: 62 RVESE-----KGAVWTV 73
>pdb|3L2C|A Chain A, Crystal Structure Of The Dna Binding Domain Of Foxo4 Bound
To Dna
Length = 110
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 6 RETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R +G+Q SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS
Sbjct: 21 RNAWGNQ----SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNS 76
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAA 93
+RHNLS + F+K+ + GK ++W L+P
Sbjct: 77 IRHNLSLHSKFIKV--HNEATGKSSWWMLNPEG 107
>pdb|1E17|A Chain A, Solution Structure Of The Dna Binding Domain Of The Human
Forkhead Transcription Factor Afx (Foxo4)
Length = 150
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 11/91 (12%)
Query: 6 RETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R +G+Q SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS
Sbjct: 37 RNAWGNQ----SYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNS 92
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91
+RHNLS + F+K+ + GK ++W L+P
Sbjct: 93 IRHNLSLHSKFIKV--HNEATGKSSWWMLNP 121
>pdb|3CO7|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3CO7|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Dbe2 Dna
pdb|3COA|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
pdb|3COA|F Chain F, Crystal Structure Of Foxo1 Dbd Bound To Ire Dna
Length = 117
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 11/91 (12%)
Query: 6 RETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNS 60
R +G+ SY L AI SS EK L LS IY ++ PY++ ++ W+NS
Sbjct: 8 RNAWGN----LSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNS 63
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91
+RHNLS + F+++ + + GK ++W L+P
Sbjct: 64 IRHNLSLHSKFIRV--QNEGTGKSSWWMLNP 92
>pdb|3CO6|C Chain C, Crystal Structure Of Foxo1 Dbd Bound To Dbe1 Dna
Length = 100
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 17 SYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNLSFNDCF 71
SY L AI SS EK L LS IY ++ PY++ ++ W+NS+RHNLS + F
Sbjct: 15 SYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKF 74
Query: 72 VKIPRRPDRPGKGAYWALHP 91
+++ + + GK ++W L+P
Sbjct: 75 IRV--QNEGTGKSSWWMLNP 92
>pdb|2UZK|A Chain A, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
pdb|2UZK|C Chain C, Crystal Structure Of The Human Foxo3a-Dbd Bound To Dna
Length = 97
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 17 SYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNLSFNDCF 71
SY L AI SSP+K L LS IY ++ PY++ ++ W+NS+RHNLS + F
Sbjct: 5 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 64
Query: 72 VKIPRRPDRPGKGAYWALHP 91
+++ + + GK ++W ++P
Sbjct: 65 MRV--QNEGTGKSSWWIINP 82
>pdb|2K86|A Chain A, Solution Structure Of Foxo3a Forkhead Domain
Length = 103
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query: 17 SYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNLSFNDCF 71
SY L AI SSP+K L LS IY ++ PY++ ++ W+NS+RHNLS + F
Sbjct: 13 SYADLITRAIESSPDKRLTLSQIYEWMVRCVPYFKDKGDSNSSAGWKNSIRHNLSLHSRF 72
Query: 72 VKIPRRPDRPGKGAYWALHP 91
+++ + + GK ++W ++P
Sbjct: 73 MRV--QNEGTGKSSWWIINP 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,047,833
Number of Sequences: 62578
Number of extensions: 466096
Number of successful extensions: 884
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 20
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)