Query psy977
Match_columns 485
No_of_seqs 258 out of 881
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 19:07:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy977.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/977hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3562|consensus 100.0 9.1E-46 2E-50 355.0 7.5 154 1-166 1-155 (277)
2 KOG3563|consensus 100.0 8.3E-41 1.8E-45 337.3 7.5 114 2-115 162-275 (454)
3 PF00250 Fork_head: Fork head 100.0 8.5E-38 1.8E-42 265.7 2.6 96 13-108 1-96 (96)
4 cd00059 FH Forkhead (FH), also 100.0 2.9E-36 6.3E-41 248.6 7.1 78 13-90 1-78 (78)
5 smart00339 FH FORKHEAD. FORKHE 100.0 2.7E-35 5.9E-40 247.6 7.3 87 13-99 1-87 (89)
6 KOG2294|consensus 100.0 2.2E-35 4.8E-40 298.0 -0.2 105 9-113 126-233 (454)
7 KOG4385|consensus 99.8 4.3E-22 9.3E-27 207.6 0.5 80 10-94 365-444 (581)
8 COG5025 Transcription factor o 99.8 1.8E-20 3.9E-25 201.6 4.5 97 6-102 330-426 (610)
9 COG5025 Transcription factor o 99.5 3.5E-15 7.5E-20 161.2 -0.3 93 8-100 81-173 (610)
10 KOG3562|consensus 99.4 1.7E-13 3.8E-18 133.2 5.8 108 249-362 71-218 (277)
11 KOG3563|consensus 97.9 1.4E-05 2.9E-10 83.2 4.7 42 249-296 231-276 (454)
12 KOG2294|consensus 97.0 0.00027 5.8E-09 72.7 1.6 38 249-292 190-232 (454)
13 PF00538 Linker_histone: linke 91.8 0.19 4.1E-06 41.2 3.4 33 17-49 4-37 (77)
14 smart00526 H15 Domain in histo 90.8 0.21 4.6E-06 39.6 2.7 32 17-48 6-38 (66)
15 cd00073 H15 linker histone 1 a 86.7 0.96 2.1E-05 38.2 4.1 33 17-49 6-39 (88)
16 PF00250 Fork_head: Fork head 85.7 0.23 5.1E-06 42.9 -0.1 34 249-288 59-96 (96)
17 PF05066 HARE-HTH: HB1, ASXL, 82.6 0.83 1.8E-05 36.7 1.9 57 16-74 1-62 (72)
18 PF14338 Mrr_N: Mrr N-terminal 69.5 3 6.4E-05 35.1 1.8 74 17-95 1-86 (92)
19 KOG4012|consensus 61.7 7.7 0.00017 39.3 3.2 67 14-90 43-115 (243)
20 KOG1924|consensus 44.6 1.5E+02 0.0032 35.5 10.0 22 256-285 640-661 (1102)
21 PF12872 OST-HTH: OST-HTH/LOTU 40.3 15 0.00033 28.9 1.2 54 18-72 6-62 (74)
22 COG2958 Uncharacterized protei 35.3 44 0.00095 34.9 3.8 68 17-90 6-85 (307)
No 1
>KOG3562|consensus
Probab=100.00 E-value=9.1e-46 Score=355.05 Aligned_cols=154 Identities=66% Similarity=1.161 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCC
Q psy977 1 MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDR 80 (485)
Q Consensus 1 mprp~r~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~de 80 (485)
||||+|++|+||||||||+.|.+|||++||+|+|.|+|||+||+++|||||.+++.||||+|||||+|+||+||+|..|+
T Consensus 1 MPRP~k~sY~dQKPPYSYIsLTaMAI~~SpekmLPLseIYkfImDrFPfYRkNTQrWQNSLRHNLSFNDCFIKiPRr~dr 80 (277)
T KOG3562|consen 1 MPRPGKNSYGDQKPPYSYISLTAMAIQSSPEKMLPLSEIYKFIMDRFPFYRKNTQRWQNSLRHNLSFNDCFIKIPRRPDR 80 (277)
T ss_pred CCCCccccccccCCCceeeehhhHHhhcChhhcCcHHHHHHHHHhhCchhhhchHHHHHHhhccccccceeeecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeecCCchhhhccCCceeecccCCCCCc-chhhhhhhhcccccccccCCCccCCCCCCCCCCCCCCCCCcccccc
Q psy977 81 PGKGAYWALHPAALDMFENGSFLRRRKRFKLPK-VDQSLLEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSI 159 (485)
Q Consensus 81 pGKGsyWtIdPea~~~fe~Gs~~RRRKR~k~~k-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~pp~~~s~~~~sFsIDSI 159 (485)
+|||+||+|+|.+.++||+|+++|||||+|..+ ..++..+..++.++..++ ....++.+.++.|+++
T Consensus 81 pGKGsyWalHP~a~dMFENGS~LRRrKRFrv~k~~d~d~~n~~l~a~a~~~~------------v~~~~~n~~~~a~~~~ 148 (277)
T KOG3562|consen 81 PGKGSYWALHPSAFDMFENGSLLRRRKRFRVLKSDDKDPSNTHLPAMANAAY------------VAQPSGNKHPLAIENP 148 (277)
T ss_pred CCCccceeeccchhhhcccchHHHHhhhhhhccccccCcccccccccccchh------------eeeccCCCCcccccCc
Confidence 999999999999999999999999999999888 333444444444333222 1123577789999999
Q ss_pred ccCCCCC
Q psy977 160 ISSQPSA 166 (485)
Q Consensus 160 l~~~~~~ 166 (485)
|....++
T Consensus 149 i~~~~~~ 155 (277)
T KOG3562|consen 149 IDPEYKS 155 (277)
T ss_pred cChhhhh
Confidence 9988874
No 2
>KOG3563|consensus
Probab=100.00 E-value=8.3e-41 Score=337.28 Aligned_cols=114 Identities=63% Similarity=1.202 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCC
Q psy977 2 PRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRP 81 (485)
Q Consensus 2 prp~r~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~dep 81 (485)
|+--|+.|.+.||||||+.||.|||+.+|.|+|||+|||+||++.|||||.+.+.|||||||.||+||||+||+|.+|++
T Consensus 162 pktyRRsY~haKPPYSYISLITMAIQ~~pskmLTLSEIYqwIMDLFPyYrqNQQRWQNSIRHSLSFNDCFVKVaRSPDKP 241 (454)
T KOG3563|consen 162 PKTYRRSYTHAKPPYSYISLITMAIQQAPSKMLTLSEIYQWIMDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVARSPDKP 241 (454)
T ss_pred CceeeccccCCCCChhHHHHHHHHHHhCCccceeHHHHHHHHHHhhhHhhhhHHHHHhhhhhhccccceeeeccCCCCCC
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeecCCchhhhccCCceeecccCCCCCcch
Q psy977 82 GKGAYWALHPAALDMFENGSFLRRRKRFKLPKVD 115 (485)
Q Consensus 82 GKGsyWtIdPea~~~fe~Gs~~RRRKR~k~~k~~ 115 (485)
|||+||+|+|++.++||+|.++||+||||..+..
T Consensus 242 GKGSfWTLHpdsGNMFENGCYLRRQKRFK~ekk~ 275 (454)
T KOG3563|consen 242 GKGSFWTLHPDSGNMFENGCYLRRQKRFKCEKKE 275 (454)
T ss_pred CCccceeecCCcCcccccchhehhhhhhhhhhhh
Confidence 9999999999999999999999999999976543
No 3
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=100.00 E-value=8.5e-38 Score=265.70 Aligned_cols=96 Identities=61% Similarity=1.215 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecCCc
Q psy977 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPA 92 (485)
Q Consensus 13 KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtIdPe 92 (485)
||||||++||++||+++|+++|||+|||+||+++||||+.+.++||||||||||+|+||+||+|..++.|||+||+|+++
T Consensus 1 KPp~sY~~LI~~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~ 80 (96)
T PF00250_consen 1 KPPYSYATLIAMAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPE 80 (96)
T ss_dssp -SSS-HHHHHHHHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CT
T ss_pred CCCCcHHHHHHHHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hhhhccCCceeecccC
Q psy977 93 ALDMFENGSFLRRRKR 108 (485)
Q Consensus 93 a~~~fe~Gs~~RRRKR 108 (485)
+...++++.+++||||
T Consensus 81 ~~~~~~~~~~~~~~~~ 96 (96)
T PF00250_consen 81 AIEEFEKGRFKRRRKR 96 (96)
T ss_dssp HHHHHHHSCCSSSSSS
T ss_pred HHHHHhcchhhhhhcc
Confidence 9999999999888876
No 4
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=100.00 E-value=2.9e-36 Score=248.58 Aligned_cols=78 Identities=67% Similarity=1.265 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecC
Q psy977 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALH 90 (485)
Q Consensus 13 KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtId 90 (485)
||||||++||++||+++|+++|||+|||+||+++|||||.++.|||||||||||+|+||+||+|..+++|||+||+||
T Consensus 1 kP~~sY~~LI~~Ai~~sp~~~lTL~eIy~~I~~~~pyyr~~~~gWknSIRHnLS~n~~F~kv~r~~~~~gkg~~W~i~ 78 (78)
T cd00059 1 KPPYSYSALIAMAIQSSPEKRLTLSEIYKWISDNFPYFRDAPAGWQNSIRHNLSLNKCFVKVPREPDEPGKGSYWTLD 78 (78)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCCccccCCCCCccceeEecccccceEECCCCCCCCCCCCeeeeC
Confidence 899999999999999999999999999999999999999999999999999999999999999998889999999996
No 5
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=100.00 E-value=2.7e-35 Score=247.55 Aligned_cols=87 Identities=70% Similarity=1.288 Sum_probs=83.2
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecCCc
Q psy977 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHPA 92 (485)
Q Consensus 13 KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtIdPe 92 (485)
||||||++||++||+++|+++|||+|||+||+++|||||.+.+|||||||||||+|+||+||+|..+.+|||+||+|+|+
T Consensus 1 kP~~sY~~lI~~ai~~sp~~~ltl~~Iy~~I~~~~pyy~~~~~~WknSIRHnLS~n~~F~kv~~~~~~~gkg~~W~i~~~ 80 (89)
T smart00339 1 KPPYSYIALIAMAILSSPDKRLTLSEIYKWIEDNFPYYRENRAGWQNSIRHNLSLNDCFVKVPREGDRPGKGSYWTLDPD 80 (89)
T ss_pred CCCCCHHHHHHHHHHhCCCCCeeHHHHHHHHHHhCchhhcCccccccccccccchhhceeecCcCCCCCCCCCEEEECcc
Confidence 89999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hhhhccC
Q psy977 93 ALDMFEN 99 (485)
Q Consensus 93 a~~~fe~ 99 (485)
+..+|+.
T Consensus 81 ~~~~~~~ 87 (89)
T smart00339 81 AENMFEN 87 (89)
T ss_pred HHHHHhc
Confidence 9875554
No 6
>KOG2294|consensus
Probab=100.00 E-value=2.2e-35 Score=298.02 Aligned_cols=105 Identities=54% Similarity=0.967 Sum_probs=98.4
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHh-cCCCcccCc-cccccccccccccccceecccCCCCCCCCcce
Q psy977 9 YGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIAD-RFPYYRRNT-QRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAY 86 (485)
Q Consensus 9 ~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~-~FPYYR~~~-~GWQNSIRHNLSLNkcFvKVpR~~depGKGsy 86 (485)
...+||+|||++||+|||+++++|+|||+|||+||+. +|||||++. .|||||||||||||+||+||+|..+++|||+|
T Consensus 126 ~~~~kpp~SY~~LI~mAI~~Sp~krLtLs~Iy~~i~~~~fpyyr~~~~~gWqNSIRHNLSLn~cF~Kvpr~~~~~gKg~~ 205 (454)
T KOG2294|consen 126 GAGVKPPYSYSGLIAMAIRLSPGKRLTLGGIYFYILLEHFPYYRDANMPGWKNSIRHNLSLNKCFVKVPRERGRPGKGNY 205 (454)
T ss_pred CCCcCCccccccccccccccCCCcceeecCeeEEEEeccccccccCCCccchhhcccccccccCccccCCcccCCCCCCc
Confidence 4579999999999999999999999999999999995 999999999 99999999999999999999998888999999
Q ss_pred eecCCchhh-hccCCceeecccCCCCCc
Q psy977 87 WALHPAALD-MFENGSFLRRRKRFKLPK 113 (485)
Q Consensus 87 WtIdPea~~-~fe~Gs~~RRRKR~k~~k 113 (485)
|+|||+..+ +|++|.++|||++++...
T Consensus 206 W~ldP~~~~~~~~~g~~~rr~~~~~~~~ 233 (454)
T KOG2294|consen 206 WTLDPDDENNMFDNGSFRRRRRSKSNGR 233 (454)
T ss_pred cccCcchhcccccccccccccccccccc
Confidence 999999998 999999999988855433
No 7
>KOG4385|consensus
Probab=99.83 E-value=4.3e-22 Score=207.56 Aligned_cols=80 Identities=43% Similarity=0.924 Sum_probs=75.6
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeec
Q psy977 10 GDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWAL 89 (485)
Q Consensus 10 ~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtI 89 (485)
.|.||||+|+.||.+||+.+|++.|||+|||.|+.+.|.|||.+...|||+|||||||+|||++|+. -||.-|++
T Consensus 365 ~dvRPPfTYAsLIRqAIlESpdkQLTLNEIY~WFTrtFAYFRRNaATWKnAVRHNLSLHKCF~RVEn-----vkgavwtv 439 (581)
T KOG4385|consen 365 ADVRPPFTYASLIRQAILESPDKQLTLNEIYNWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTV 439 (581)
T ss_pred cccCCchhHHHHHHHHHhcCchhhccHHHHHHHHHHHHHHHhccchhHhHHHhhhhHHHHHHHHHHH-----Hhcceeee
Confidence 6899999999999999999999999999999999999999999999999999999999999999955 69999999
Q ss_pred CCchh
Q psy977 90 HPAAL 94 (485)
Q Consensus 90 dPea~ 94 (485)
|..+.
T Consensus 440 De~e~ 444 (581)
T KOG4385|consen 440 DEREF 444 (581)
T ss_pred ehhhh
Confidence 86543
No 8
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.80 E-value=1.8e-20 Score=201.59 Aligned_cols=97 Identities=39% Similarity=0.749 Sum_probs=90.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcc
Q psy977 6 RETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGA 85 (485)
Q Consensus 6 r~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGs 85 (485)
.......||.++|+.||..||+.+++++|+|.|||.||..+|||||....+||||||||||+|++|.||+|...++|||+
T Consensus 330 ~~~~~~~kP~~sya~~iT~ail~s~~~kmsls~Iy~~i~s~~pyYr~~p~~w~nSiRhnlSlNksf~kvP~sa~~pGKg~ 409 (610)
T COG5025 330 ADVNRTSKPAFSYANSITQAILSSPSGKMTLSEIYSWISSNLPYYRHKPTAWQNSIRHNLSLNKSFEKVPRSASQPGKGC 409 (610)
T ss_pred cccccCccCCcchhhhhHHHhhcCcccccccccccccccccchhhccCCcccCchhhhhhhhccccccCCCCcCCCCCcc
Confidence 34457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCchhhhccCCce
Q psy977 86 YWALHPAALDMFENGSF 102 (485)
Q Consensus 86 yWtIdPea~~~fe~Gs~ 102 (485)
||.|+.+..+.++.-..
T Consensus 410 fw~i~~s~~~~~~sk~~ 426 (610)
T COG5025 410 FWKIDYSYIYEKESKRN 426 (610)
T ss_pred cCccChhhhhhhccccc
Confidence 99999999887765443
No 9
>COG5025 Transcription factor of the Forkhead/HNF3 family [Transcription]
Probab=99.49 E-value=3.5e-15 Score=161.16 Aligned_cols=93 Identities=43% Similarity=0.777 Sum_probs=86.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCccee
Q psy977 8 TYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYW 87 (485)
Q Consensus 8 ~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyW 87 (485)
.+...||+|+|+.+|.++|..+++++|||..||.||...|.||.....+|+|||||||++|+.|.||.+..+-.+||.||
T Consensus 81 ~~t~~v~~~s~a~gr~~~il~s~~~~lt~s~~~~~~~~~~~~~~k~~~~~~~sIr~Nls~~~a~~~i~g~~g~~~~g~~~ 160 (610)
T COG5025 81 NWTYYVPPYSYATGRGLAILNSPDKPLTLSKIYTWIHNTFFYYAKVVSRWQNSIRHNLSLNDAFIKIEGRNGAKVKGHFW 160 (610)
T ss_pred CcccccCCeeeeeccccccccCcccCCcccceeeeeeecccccccccchhhhhhhcccccCceEEEEeccCCccccceee
Confidence 35668999999999999999999999999999999999999999999999999999999999999999988888999999
Q ss_pred ecCCchhhhccCC
Q psy977 88 ALHPAALDMFENG 100 (485)
Q Consensus 88 tIdPea~~~fe~G 100 (485)
.|.|..+..|..+
T Consensus 161 ~igP~~~~~~l~~ 173 (610)
T COG5025 161 SIGPGHETQFLKS 173 (610)
T ss_pred ccCCCccceeecc
Confidence 9999887777544
No 10
>KOG3562|consensus
Probab=99.42 E-value=1.7e-13 Score=133.19 Aligned_cols=108 Identities=30% Similarity=0.487 Sum_probs=73.4
Q ss_pred cccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccCCCCCC-CccchhccccCCcccCCc---------cCc
Q psy977 249 SVKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPK-VDQSLLEATYPVLKAENY---------TSI 314 (485)
Q Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkrfk~~~-~~~~~l~~~~~~~~~~~~---------~~~ 314 (485)
-|||||.+-.| ||+ +-|.|.||||||||||||||||+.+ +|+++.+..+++.++.+. ...
T Consensus 71 FIKiPRr~drpGKGsyWa------lHP~a~dMFENGS~LRRrKRFrv~k~~d~d~~n~~l~a~a~~~~v~~~~~n~~~~a 144 (277)
T KOG3562|consen 71 FIKIPRRPDRPGKGSYWA------LHPSAFDMFENGSLLRRRKRFRVLKSDDKDPSNTHLPAMANAAYVAQPSGNKHPLA 144 (277)
T ss_pred eeecCCCCCCCCCcccee------eccchhhhcccchHHHHhhhhhhccccccCcccccccccccchheeeccCCCCccc
Confidence 37999988888 999 9999999999999999999999988 888888877766655210 000
Q ss_pred cc-----------------CCCCCCCCCC--------CCCCCCCccccccccCCCCCCCCCCCC-CCCCCCCCC
Q psy977 315 KE-----------------TKSEPLKPTT--------LSNANKSFSIDSIISSQPSAALPQSMP-QPIFSHFHP 362 (485)
Q Consensus 315 ~~-----------------~~~~p~~p~p--------~~~~~~sFSIdSIms~~~~~s~p~~~~-~p~~~~~hP 362 (485)
.+ ....+..+.| ++.+++.|+||+||+..+..-+.++.- .|...|+|+
T Consensus 145 ~~~~i~~~~~~~~~~n~Saaqm~p~~p~p~~lpt~mspa~p~~~~ti~~l~~p~~~s~~s~~~~~~P~~e~~~~ 218 (277)
T KOG3562|consen 145 IENPIDPEYKSSLMPNFSAAQMPPAYPLPNQLPTMMSPAKPKRYFTIESLDSPDPISMPSEGASGVPLKEYCSA 218 (277)
T ss_pred ccCccChhhhhhhcCCcccccCCCCCCCcccCCCCCCCCcccccccHhhhcCCCcccCCCccccCCCchhhccc
Confidence 00 0001111111 245789999999999877665555322 244455553
No 11
>KOG3563|consensus
Probab=97.86 E-value=1.4e-05 Score=83.22 Aligned_cols=42 Identities=40% Similarity=0.654 Sum_probs=38.1
Q ss_pred cccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccCCCCCCCcc
Q psy977 249 SVKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPKVDQ 296 (485)
Q Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkrfk~~~~~~ 296 (485)
-|||+|-|--| ||+ |-|.+-+|||||-+|||.||||+.+...
T Consensus 231 FVKVaRSPDKPGKGSfWT------LHpdsGNMFENGCYLRRQKRFK~ekk~~ 276 (454)
T KOG3563|consen 231 FVKVARSPDKPGKGSFWT------LHPDSGNMFENGCYLRRQKRFKCEKKEA 276 (454)
T ss_pred eeeccCCCCCCCCcccee------ecCCcCcccccchhehhhhhhhhhhhhc
Confidence 48999988888 999 9999999999999999999999876554
No 12
>KOG2294|consensus
Probab=97.02 E-value=0.00027 Score=72.67 Aligned_cols=38 Identities=39% Similarity=0.560 Sum_probs=33.3
Q ss_pred cccccCCCCCC----CCccccccchhhhhhh-hhcccchhhcccCCCCC
Q psy977 249 SVKMDRYSGQP----YLPAQQSEHSVSAALD-MFENGSFLRRRKRFKLP 292 (485)
Q Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~d-mf~ngsflrRRkrfk~~ 292 (485)
-|||+|..|++ ||. +||+++| |||||+|+|||+|++..
T Consensus 190 F~Kvpr~~~~~gKg~~W~------ldP~~~~~~~~~g~~~rr~~~~~~~ 232 (454)
T KOG2294|consen 190 FVKVPRERGRPGKGNYWT------LDPDDENNMFDNGSFRRRRRSKSNG 232 (454)
T ss_pred ccccCCcccCCCCCCccc------cCcchhccccccccccccccccccc
Confidence 47888877766 999 9999999 99999999999998744
No 13
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=91.77 E-value=0.19 Score=41.21 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCCC
Q psy977 17 SYISLTAMAIWSSPE-KMLPLSDIYRFIADRFPY 49 (485)
Q Consensus 17 SYaaLIamAI~sSP~-krLTLsEIYewI~~~FPY 49 (485)
+|.+||.+||.+..+ +..+++.|..||+++|+.
T Consensus 4 ~y~~mI~eAI~~l~er~GsS~~aI~kyI~~~y~~ 37 (77)
T PF00538_consen 4 PYSDMILEAIKALKERKGSSLQAIKKYIKAKYKV 37 (77)
T ss_dssp CHHHHHHHHHHHCCSSSSEEHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhcCc
Confidence 699999999998554 789999999999999964
No 14
>smart00526 H15 Domain in histone families 1 and 5.
Probab=90.84 E-value=0.21 Score=39.60 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=28.4
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCC
Q psy977 17 SYISLTAMAIWSSPE-KMLPLSDIYRFIADRFP 48 (485)
Q Consensus 17 SYaaLIamAI~sSP~-krLTLsEIYewI~~~FP 48 (485)
+|..||.+||.+..+ +..+++.|..||.++|.
T Consensus 6 ~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~ 38 (66)
T smart00526 6 PYSEMITEAISALKERKGSSLQAIKKYIEANYK 38 (66)
T ss_pred CHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCC
Confidence 899999999998665 56899999999999965
No 15
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=86.70 E-value=0.96 Score=38.18 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=28.8
Q ss_pred CHHHHHHHHHhcC-CCCCCCHHHHHHHHHhcCCC
Q psy977 17 SYISLTAMAIWSS-PEKMLPLSDIYRFIADRFPY 49 (485)
Q Consensus 17 SYaaLIamAI~sS-P~krLTLsEIYewI~~~FPY 49 (485)
+|..||.+||.+. ..+..+++.|..||+++|+.
T Consensus 6 ~y~~MI~eAI~~l~er~GsS~~aI~kyI~~~y~~ 39 (88)
T cd00073 6 PYSEMVTEAIKALKERKGSSLQAIKKYIEAKYKV 39 (88)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCCc
Confidence 8999999999974 46778999999999999874
No 16
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=85.67 E-value=0.23 Score=42.94 Aligned_cols=34 Identities=44% Similarity=0.688 Sum_probs=26.8
Q ss_pred cccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccC
Q psy977 249 SVKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKR 288 (485)
Q Consensus 249 ~~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkr 288 (485)
=|||+|.++.+ ||+ +|+.+.+.|++|.+.|||||
T Consensus 59 F~kv~~~~~~~gkg~~W~------i~~~~~~~~~~~~~~~~~~~ 96 (96)
T PF00250_consen 59 FVKVPRDPSEPGKGSYWT------IDPEAIEEFEKGRFKRRRKR 96 (96)
T ss_dssp EEEESCCTSSSSSSEEEE------E-CTHHHHHHHSCCSSSSSS
T ss_pred eeecCcCCCCCCCceeEE------eCHHHHHHHhcchhhhhhcc
Confidence 46777733333 899 99999999999999999997
No 17
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=82.64 E-value=0.83 Score=36.66 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccc-----cccceecc
Q psy977 16 YSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLS-----FNDCFVKI 74 (485)
Q Consensus 16 ySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLS-----LNkcFvKV 74 (485)
+||..++...|+... +-|+.+||++.|.++- +|...++...++|+-.|. .+..|++|
T Consensus 1 mt~~eaa~~vL~~~~-~pm~~~eI~~~i~~~~-~~~~~~k~p~~~i~a~ly~~~~~~d~~F~~v 62 (72)
T PF05066_consen 1 MTFKEAAYEVLEEAG-RPMTFKEIWEEIQERG-LYKKSGKTPEATIAAQLYTDIKNEDSRFVKV 62 (72)
T ss_dssp S-HHHHHHHHHHHH--S-EEHHHHHHHHHHHH-TS---GGGGGHHHH-HHHHHHH-T-SS-EES
T ss_pred CCHHHHHHHHHHhcC-CCcCHHHHHHHHHHhC-CCCcccCCHHHHHHHHHHHHcccCCCCEEEe
Confidence 478888888888776 8899999999999765 344446777788874443 44589998
No 18
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=69.54 E-value=3 Score=35.07 Aligned_cols=74 Identities=22% Similarity=0.337 Sum_probs=46.1
Q ss_pred CHHHHHHHHHhc--CCCCCCCHHHHHHHHHhcCCCc--------ccCc--cccccccccccccccceecccCCCCCCCCc
Q psy977 17 SYISLTAMAIWS--SPEKMLPLSDIYRFIADRFPYY--------RRNT--QRWQNSLRHNLSFNDCFVKIPRRPDRPGKG 84 (485)
Q Consensus 17 SYaaLIamAI~s--SP~krLTLsEIYewI~~~FPYY--------R~~~--~GWQNSIRHNLSLNkcFvKVpR~~depGKG 84 (485)
+|..|+...|.. .-++.++.+|||+.|.++|..= .... ..|+|.|+=.++-=++.--|. .+++|
T Consensus 1 ~~~~~~~piL~~L~~~g~~~~~~ei~~~v~~~~~ls~e~~~~~~~sg~~~~~~~~ri~Wa~~~L~~aGli~----~~~rG 76 (92)
T PF14338_consen 1 TYDELMPPILEALKDLGGSASRKEIYERVAERFGLSDEERNERLPSGQGYSRFKNRIRWARSYLKKAGLIE----RPKRG 76 (92)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhCCCHHHHHHHcccCCcchhHHHhHHHHHHHHHHCCCcc----CCCCC
Confidence 355666554443 3368899999999999998732 1121 259999886665433333232 23444
Q ss_pred ceeecCCchhh
Q psy977 85 AYWALHPAALD 95 (485)
Q Consensus 85 syWtIdPea~~ 95 (485)
+|.|.+...+
T Consensus 77 -~~~iT~~G~~ 86 (92)
T PF14338_consen 77 -IWRITEKGRK 86 (92)
T ss_pred -ceEECHhHHH
Confidence 9999876543
No 19
>KOG4012|consensus
Probab=61.72 E-value=7.7 Score=39.32 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCCCcccCccccccccccccccc-----cceecccCCCCCCCCccee
Q psy977 14 PPYSYISLTAMAIWSSP-EKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFN-----DCFVKIPRRPDRPGKGAYW 87 (485)
Q Consensus 14 PPySYaaLIamAI~sSP-~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLN-----kcFvKVpR~~depGKGsyW 87 (485)
+.-+|+.||..||...- ....++.-|+.||..+|+.|.-.. |.-|.+++|+ ..|+++ .|.|.-|
T Consensus 43 ~~P~~~~mi~eAi~a~keR~GsS~aAikK~i~~~Y~g~~v~k----~n~~lk~alK~~v~~g~l~Qt------kG~GAsG 112 (243)
T KOG4012|consen 43 AHPPYSEMITEAISALKERKGSSLAAIKKYIAANYPGDDVEK----NNSRLKLALKKGVSKGVLVQT------KGTGASG 112 (243)
T ss_pred CCCcHHHHHHHHHHHhhhcccchHHHHHHHHhhcCccchhhh----hhHHHHHHHHhhhccCceeee------ccCCccc
Confidence 34489999999999875 556889999999999998775321 2335555554 345544 1666666
Q ss_pred ecC
Q psy977 88 ALH 90 (485)
Q Consensus 88 tId 90 (485)
...
T Consensus 113 sFk 115 (243)
T KOG4012|consen 113 SFK 115 (243)
T ss_pred ccc
Confidence 554
No 20
>KOG1924|consensus
Probab=44.60 E-value=1.5e+02 Score=35.48 Aligned_cols=22 Identities=18% Similarity=0.244 Sum_probs=13.5
Q ss_pred CCCCCCccccccchhhhhhhhhcccchhhc
Q psy977 256 SGQPYLPAQQSEHSVSAALDMFENGSFLRR 285 (485)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~dmf~ngsflrR 285 (485)
+-|-+|..- -+|-|+|-.||.+
T Consensus 640 s~~cFWvkv--------~Edk~en~dlfak 661 (1102)
T KOG1924|consen 640 SENCFWVKV--------NEDKLENDDLFAK 661 (1102)
T ss_pred Cccceeeec--------chhhccchHHHHH
Confidence 444577732 3677788877654
No 21
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=40.34 E-value=15 Score=28.88 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCC--CCCCCHHHHHHHHHhcCCCcccCcccccccccccc-cccccee
Q psy977 18 YISLTAMAIWSSP--EKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNL-SFNDCFV 72 (485)
Q Consensus 18 YaaLIamAI~sSP--~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNL-SLNkcFv 72 (485)
-..+|..+|.+.. ++.+.|+++..++.++||-|....=|.. ++++-| ++.+.|+
T Consensus 6 ~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~-~l~~ll~~~~~~~~ 62 (74)
T PF12872_consen 6 LKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFS-SLSELLESLPDVVE 62 (74)
T ss_dssp HHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSS-SHHHHHHT-TTTEE
T ss_pred HHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCC-cHHHHHHhCCCeEE
Confidence 4578888885554 3479999999999999988875544443 444444 4455544
No 22
>COG2958 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.34 E-value=44 Score=34.87 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred CHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCc------ccCccc------cccccccccccccceecccCCCCCCCCc
Q psy977 17 SYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYY------RRNTQR------WQNSLRHNLSFNDCFVKIPRRPDRPGKG 84 (485)
Q Consensus 17 SYaaLIamAI~sSP~krLTLsEIYewI~~~FPYY------R~~~~G------WQNSIRHNLSLNkcFvKVpR~~depGKG 84 (485)
+|..+|-..++. .+..+|..|||+|+.+.||-= ...++. =--+.|-||-.+--|.||.. |..
T Consensus 6 ~~~e~vl~~Lq~-~~ep~t~~eI~eka~e~~~~~~~~kk~~s~g~tp~q~va~~iy~~~~lq~~~pflKvte-----~P~ 79 (307)
T COG2958 6 NLIEIVLSVLQT-SEEPFTAREIAEKAFETFPAECQEKKFDSGGDTPQQLVAEIIYTRPNLQEKHPFLKVTE-----GPR 79 (307)
T ss_pred hhHHHHHHHHHc-cCCCCcHHHHHHHHHHhccHHHHHHhhccccccHHHHHHHHHhcCccccccCccccccc-----Cce
Confidence 566666666665 889999999999999999832 222222 23466788888889999833 455
Q ss_pred ceeecC
Q psy977 85 AYWALH 90 (485)
Q Consensus 85 syWtId 90 (485)
-||--.
T Consensus 80 ~~~lke 85 (307)
T COG2958 80 LYYLKE 85 (307)
T ss_pred EEeecc
Confidence 677544
Done!