Query psy977
Match_columns 485
No_of_seqs 258 out of 881
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 19:08:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vtn_C HNF-3/FORK head DNA-rec 100.0 1.6E-43 5.5E-48 303.6 6.6 101 11-111 1-101 (102)
2 2hdc_A Protein (transcription 100.0 3.7E-43 1.3E-47 299.0 3.2 97 12-108 1-97 (97)
3 1kq8_A HFH-1, hepatocyte nucle 100.0 8.8E-43 3E-47 298.1 4.6 98 12-109 1-99 (100)
4 2hfh_A Genesis, HFH-2; HNF-3 h 100.0 1.3E-42 4.6E-47 301.2 4.6 101 12-112 2-102 (109)
5 2c6y_A Forkhead box protein K2 100.0 2.2E-42 7.5E-47 300.6 3.5 101 8-108 11-111 (111)
6 3coa_C Forkhead box protein O1 100.0 4.9E-37 1.7E-41 269.3 5.2 86 7-94 5-95 (117)
7 3l2c_A Forkhead box protein O4 100.0 5.5E-37 1.9E-41 266.2 5.1 91 3-95 14-109 (110)
8 3bpy_A FORK head domain, forkh 100.0 2.9E-36 1E-40 251.0 4.9 79 10-90 2-85 (85)
9 1e17_A AFX; DNA binding domain 100.0 2.1E-36 7.1E-41 275.0 3.5 95 7-106 34-133 (150)
10 2a07_F Forkhead box protein P2 100.0 2.4E-36 8.1E-41 255.7 1.2 77 12-93 2-78 (93)
11 3g73_A Forkhead box protein M1 100.0 3.7E-35 1.2E-39 264.7 3.7 99 5-106 10-110 (142)
12 1vtn_C HNF-3/FORK head DNA-rec 98.1 6.4E-07 2.2E-11 76.9 1.1 36 250-291 62-101 (102)
13 2hdc_A Protein (transcription 97.9 1.7E-06 5.9E-11 73.7 0.0 33 250-288 61-97 (97)
14 2hfh_A Genesis, HFH-2; HNF-3 h 97.9 2.5E-06 8.5E-11 74.2 1.0 38 250-293 62-103 (109)
15 1kq8_A HFH-1, hepatocyte nucle 97.7 5.7E-06 2E-10 70.8 0.4 35 250-290 61-100 (100)
16 2c6y_A Forkhead box protein K2 96.3 0.00056 1.9E-08 59.6 -0.3 33 250-288 75-111 (111)
17 1uss_A Histone H1; DNA binding 79.2 1.8 6.2E-05 35.7 4.1 32 17-48 9-41 (88)
18 1uhm_A Histone H1, histone HHO 77.2 1.9 6.3E-05 34.7 3.4 32 17-48 6-38 (78)
19 1hst_A Histone H5; chromosomal 74.0 2.6 8.9E-05 35.1 3.6 32 17-48 9-41 (90)
20 2rqp_A Heterochromatin protein 71.0 1.9 6.4E-05 35.4 2.1 33 17-49 11-44 (88)
21 1ust_A Histone H1; DNA binding 70.8 2.7 9.4E-05 35.1 3.1 32 17-48 9-41 (93)
22 2lso_A Histone H1X; structural 49.4 5 0.00017 32.8 0.0 32 17-48 7-39 (83)
23 4aw0_A HPDK1, 3-phosphoinositi 25.6 19 0.00064 35.3 0.8 39 18-59 261-301 (311)
24 1ghc_A GH1; chromosomal protei 25.0 10 0.00035 29.8 -1.0 30 17-46 5-35 (75)
No 1
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=100.00 E-value=1.6e-43 Score=303.59 Aligned_cols=101 Identities=70% Similarity=1.298 Sum_probs=98.2
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecC
Q psy977 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALH 90 (485)
Q Consensus 11 d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtId 90 (485)
++||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+
T Consensus 1 h~KPp~SY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~~GKG~~W~l~ 80 (102)
T 1vtn_C 1 HAKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFVKVARSPDKPGKGSYWALH 80 (102)
T ss_dssp CCCCSSCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHHCTTEEEECCCSCSSCSSCEEEEC
T ss_pred CcCcCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhhccceEecCCCCCCCCCcceEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCCceeecccCCCC
Q psy977 91 PAALDMFENGSFLRRRKRFKL 111 (485)
Q Consensus 91 Pea~~~fe~Gs~~RRRKR~k~ 111 (485)
|++.++|++|.++|||||+|.
T Consensus 81 p~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 81 PSSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp GGGCSTTCSSCSSSCSSCCCC
T ss_pred cCHHHHhhcCCeecccccccc
Confidence 999999999999999999874
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=3.7e-43 Score=299.00 Aligned_cols=97 Identities=68% Similarity=1.239 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecCC
Q psy977 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91 (485)
Q Consensus 12 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtIdP 91 (485)
.||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++|||+||+|+|
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~gKg~~W~l~p 80 (97)
T 2hdc_A 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 80 (97)
T ss_dssp CCCCCCHHHHHHHHHHTCTTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHHHHCCEEECSCTTCSSSCCEEECCT
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhhhhheeecCCCCCCCCCcceEEECc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCceeecccC
Q psy977 92 AALDMFENGSFLRRRKR 108 (485)
Q Consensus 92 ea~~~fe~Gs~~RRRKR 108 (485)
+++++|++|.++|||+|
T Consensus 81 ~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 81 QSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp THHHHHHHSCCCSSSCC
T ss_pred CHHHHHhCCCccCCCCC
Confidence 99999999999888876
No 3
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=8.8e-43 Score=298.13 Aligned_cols=98 Identities=50% Similarity=0.975 Sum_probs=73.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCC-CCcceeecC
Q psy977 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRP-GKGAYWALH 90 (485)
Q Consensus 12 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~dep-GKGsyWtId 90 (485)
+||||||++||+|||+++|+++|||+|||+||+++||||+.+..|||||||||||||+||+||+|..+++ |||+||+|+
T Consensus 1 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSln~~F~kv~r~~~~p~gkg~~W~l~ 80 (100)
T 1kq8_A 1 PKPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLN 80 (100)
T ss_dssp ------CHHHHHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECC
T ss_pred CcCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhCccccCCCCceecccchheehhheeeecCCCCCCCCCCCeEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999999998887 999999999
Q ss_pred CchhhhccCCceeecccCC
Q psy977 91 PAALDMFENGSFLRRRKRF 109 (485)
Q Consensus 91 Pea~~~fe~Gs~~RRRKR~ 109 (485)
|+++++|++|.++|||+|+
T Consensus 81 p~~~~~f~~g~~~rrr~r~ 99 (100)
T 1kq8_A 81 PNSEYTFADGVFRRRRYRL 99 (100)
T ss_dssp C------------------
T ss_pred cCHHHHHhCCCcccCCCCC
Confidence 9999999999999999885
No 4
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=100.00 E-value=1.3e-42 Score=301.24 Aligned_cols=101 Identities=67% Similarity=1.209 Sum_probs=90.8
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecCC
Q psy977 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91 (485)
Q Consensus 12 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtIdP 91 (485)
+||||||++||+|||++||+++|||+|||+||+++|||||.++.|||||||||||||+||+||+|..+++|||+||+|+|
T Consensus 2 ~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W~l~p 81 (109)
T 2hfh_A 2 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP 81 (109)
T ss_dssp CCCCCCHHHHHHHHHHTCSSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHHHHTCCBCCTTCTTSCSSCCCBBCCT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhhhhhhhhcCCCCCCCCCCceeEEECc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCceeecccCCCCC
Q psy977 92 AALDMFENGSFLRRRKRFKLP 112 (485)
Q Consensus 92 ea~~~fe~Gs~~RRRKR~k~~ 112 (485)
+++++|++|.++|||++++..
T Consensus 82 ~~~~~f~~g~~~Rrr~~~~~~ 102 (109)
T 2hfh_A 82 QSEDMFDNGSFLRRRKRFKRL 102 (109)
T ss_dssp TCCHHHHSSSCC---------
T ss_pred cHHHHHhCCCcccCccccccc
Confidence 999999999999999987654
No 5
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=100.00 E-value=2.2e-42 Score=300.64 Aligned_cols=101 Identities=46% Similarity=0.896 Sum_probs=95.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCccee
Q psy977 8 TYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYW 87 (485)
Q Consensus 8 ~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyW 87 (485)
...+.||||||++||+|||+++|+++|||+|||+||+++|||||.+..|||||||||||||+||+||+|..+++|||+||
T Consensus 11 ~~~~~KPp~SYa~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLSln~~F~Kv~r~~~~~GKG~~W 90 (111)
T 2c6y_A 11 RGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFW 90 (111)
T ss_dssp ---CCCCSSCHHHHHHHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHhCCCCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhhhhhhhccccCCCCCCCCcceE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ecCCchhhhccCCceeecccC
Q psy977 88 ALHPAALDMFENGSFLRRRKR 108 (485)
Q Consensus 88 tIdPea~~~fe~Gs~~RRRKR 108 (485)
+|+|+++++|++|.++|||+|
T Consensus 91 ~l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 91 RIDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp EECHHHHHHHHHHHTCCCCCC
T ss_pred EeChhHHHhhhcccccccCCC
Confidence 999999999999999888876
No 6
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=100.00 E-value=4.9e-37 Score=269.27 Aligned_cols=86 Identities=35% Similarity=0.668 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCc-----cccccccccccccccceecccCCCCCC
Q psy977 7 ETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNT-----QRWQNSLRHNLSFNDCFVKIPRRPDRP 81 (485)
Q Consensus 7 ~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~-----~GWQNSIRHNLSLNkcFvKVpR~~dep 81 (485)
.+..+.||||||++||+|||+++|+++|||+|||+||+++||||+.++ .|||||||||||||+||+||+| +++
T Consensus 5 ~s~~n~kPp~SYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLSln~~F~Kv~~--~~~ 82 (117)
T 3coa_C 5 SSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIRVQN--EGT 82 (117)
T ss_dssp --CCBTTBSCCHHHHHHHHHHTSTTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHHHCTTEEEECC--SST
T ss_pred cCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchheecchhhccccc--CCC
Confidence 345788999999999999999999999999999999999999999875 7999999999999999999988 568
Q ss_pred CCcceeecCCchh
Q psy977 82 GKGAYWALHPAAL 94 (485)
Q Consensus 82 GKGsyWtIdPea~ 94 (485)
|||+||+|+|++.
T Consensus 83 GKg~~W~l~p~~~ 95 (117)
T 3coa_C 83 GKSSWWMLNPEGG 95 (117)
T ss_dssp TCCCEEEECC---
T ss_pred CCcceEEECcccc
Confidence 9999999999876
No 7
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=100.00 E-value=5.5e-37 Score=266.19 Aligned_cols=91 Identities=33% Similarity=0.630 Sum_probs=76.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccC-----ccccccccccccccccceecccCC
Q psy977 3 RPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRN-----TQRWQNSLRHNLSFNDCFVKIPRR 77 (485)
Q Consensus 3 rp~r~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~-----~~GWQNSIRHNLSLNkcFvKVpR~ 77 (485)
++.+....+.||+|||++||+|||+++|+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+|
T Consensus 14 ~~~~~~~~~~kPpySY~~LI~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r- 92 (110)
T 3l2c_A 14 PRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN- 92 (110)
T ss_dssp ------CCBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC-
T ss_pred CCCCccCCCCCCCCCHHHHHHHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHhhhheeCCC-
Confidence 445566778999999999999999999999999999999999999999976 46999999999999999999988
Q ss_pred CCCCCCcceeecCCchhh
Q psy977 78 PDRPGKGAYWALHPAALD 95 (485)
Q Consensus 78 ~depGKGsyWtIdPea~~ 95 (485)
+++|||+||+|||++.+
T Consensus 93 -~~~GKG~~W~l~p~~~~ 109 (110)
T 3l2c_A 93 -EATGKSSWWMLNPEGGK 109 (110)
T ss_dssp -CSTTCCCEEEEC-----
T ss_pred -CCCCCCceEEECccccC
Confidence 46899999999999864
No 8
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=251.03 Aligned_cols=79 Identities=37% Similarity=0.725 Sum_probs=74.4
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCc-----cccccccccccccccceecccCCCCCCCCc
Q psy977 10 GDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNT-----QRWQNSLRHNLSFNDCFVKIPRRPDRPGKG 84 (485)
Q Consensus 10 ~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~-----~GWQNSIRHNLSLNkcFvKVpR~~depGKG 84 (485)
.+.||+|||++||+|||+++|+++|||+|||+||+++||||+.++ .|||||||||||||+||+||+| +++|||
T Consensus 2 rn~kp~~SY~~LI~~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln~~F~Kv~r--~~~GKg 79 (85)
T 3bpy_A 2 RNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EATGKS 79 (85)
T ss_dssp CBTTBSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHCTTEEEECC--CSTTCC
T ss_pred CCCcCCCCHHHHHHHHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHhhhheeCCC--CCCCCC
Confidence 468999999999999999999999999999999999999999764 6999999999999999999998 468999
Q ss_pred ceeecC
Q psy977 85 AYWALH 90 (485)
Q Consensus 85 syWtId 90 (485)
+||+||
T Consensus 80 ~~W~ld 85 (85)
T 3bpy_A 80 SWWMLN 85 (85)
T ss_dssp CEEEEC
T ss_pred CceecC
Confidence 999996
No 9
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=100.00 E-value=2.1e-36 Score=275.00 Aligned_cols=95 Identities=36% Similarity=0.685 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccC-----ccccccccccccccccceecccCCCCCC
Q psy977 7 ETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRN-----TQRWQNSLRHNLSFNDCFVKIPRRPDRP 81 (485)
Q Consensus 7 ~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~-----~~GWQNSIRHNLSLNkcFvKVpR~~dep 81 (485)
....+.||||||++||+|||+++|+++|||+|||+||+++|||||.+ ..|||||||||||||+||+||+| +++
T Consensus 34 ~~~rn~kPp~SYa~LI~~AI~sSp~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLSLnk~F~Kv~r--~~~ 111 (150)
T 1e17_A 34 GSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHN--EAT 111 (150)
T ss_dssp -CCCCTTCSCCHHHHHHHHHHHSSSCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHHSSTTEEEECC--TTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeeeeeeeeEecCC--CCC
Confidence 34467899999999999999999999999999999999999999976 47999999999999999999998 678
Q ss_pred CCcceeecCCchhhhccCCceeecc
Q psy977 82 GKGAYWALHPAALDMFENGSFLRRR 106 (485)
Q Consensus 82 GKGsyWtIdPea~~~fe~Gs~~RRR 106 (485)
|||+||+|||++. +.|...|||
T Consensus 112 GKG~~W~ldp~~~---~~gk~~Rrr 133 (150)
T 1e17_A 112 GKSSWWMLNPEGG---KSGKAPRRR 133 (150)
T ss_dssp SSSCEEEECTTCC------------
T ss_pred CCcceEEECcccc---cCCcccccc
Confidence 9999999999985 344443333
No 10
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=100.00 E-value=2.4e-36 Score=255.72 Aligned_cols=77 Identities=39% Similarity=0.892 Sum_probs=74.3
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCcccCccccccccccccccccceecccCCCCCCCCcceeecCC
Q psy977 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRRPDRPGKGAYWALHP 91 (485)
Q Consensus 12 ~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~~~~GWQNSIRHNLSLNkcFvKVpR~~depGKGsyWtIdP 91 (485)
+||||||++||+|||+++|+++|||+|||+||+++|||||.+.+|||||||||||||+||+||++ |||+||+||+
T Consensus 2 ~KPp~SY~~LI~~AI~~sp~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLSln~~F~kv~~-----gkG~~W~l~~ 76 (93)
T 2a07_F 2 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVEN-----VKGAVWTVDE 76 (93)
T ss_dssp CCCSCCHHHHHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEEC-----SSSEECCBCH
T ss_pred CCCCCCHHHHHHHHHHhCCCCCccHHHHHHHHHHhCCccccCCCccccccceeeehhhceeecCC-----CCCCeeEECh
Confidence 69999999999999999999999999999999999999999999999999999999999999975 8999999998
Q ss_pred ch
Q psy977 92 AA 93 (485)
Q Consensus 92 ea 93 (485)
++
T Consensus 77 ~~ 78 (93)
T 2a07_F 77 VE 78 (93)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 11
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=264.71 Aligned_cols=99 Identities=36% Similarity=0.743 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhcCCCCCCCHHHHHHHHHhcCCCccc-CccccccccccccccccceecccCCCCCCCC
Q psy977 5 CRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRR-NTQRWQNSLRHNLSFNDCFVKIPRRPDRPGK 83 (485)
Q Consensus 5 ~r~~~~d~KPPySYaaLIamAI~sSP~krLTLsEIYewI~~~FPYYR~-~~~GWQNSIRHNLSLNkcFvKVpR~~depGK 83 (485)
+-....++||||||++||+|||+++++++|||+|||+||+++|||||. +..|||||||||||||+||+|+ .+++||
T Consensus 10 s~~~~~~~KPpySYa~LI~~AI~~sp~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLSln~~F~r~---~~~~GK 86 (142)
T 3g73_A 10 SWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLSLHDMFVRE---TSANGK 86 (142)
T ss_dssp ----CTTSCCSSCHHHHHHHHHHTSTTSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHHHCTTEEEE---ECTTSC
T ss_pred CCCccCCCCCCCCHHHHHHHHHHhCCCCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhhhhhhheec---CCCCCC
Confidence 344567899999999999999999999999999999999999999998 8899999999999999999987 356899
Q ss_pred cceeecCCchhhhc-cCCceeecc
Q psy977 84 GAYWALHPAALDMF-ENGSFLRRR 106 (485)
Q Consensus 84 GsyWtIdPea~~~f-e~Gs~~RRR 106 (485)
|+||+|||++++.+ .++.+++.+
T Consensus 87 g~~W~i~p~~~~~l~~d~~~k~~~ 110 (142)
T 3g73_A 87 VSFWTIHPSANRYLTLDQVFKPLD 110 (142)
T ss_dssp CEEEEECTTTCCCCCCC-------
T ss_pred CceEEECccccccchhhhhhcccc
Confidence 99999999997654 555554433
No 12
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=98.09 E-value=6.4e-07 Score=76.94 Aligned_cols=36 Identities=50% Similarity=0.847 Sum_probs=31.1
Q ss_pred ccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccCCCC
Q psy977 250 VKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKRFKL 291 (485)
Q Consensus 250 ~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkrfk~ 291 (485)
|||+|.++.+ ||+ +|+++++|||||+|+|||||||+
T Consensus 62 ~kv~r~~~~~GKG~~W~------l~p~~~~~f~~g~~~rr~~~~~~ 101 (102)
T 1vtn_C 62 VKVARSPDKPGKGSYWA------LHPSSGNMFENGCYLRRQKRFKL 101 (102)
T ss_dssp EEECCCSCSSCSSCEEE------ECGGGCSTTCSSCSSSCSSCCCC
T ss_pred EecCCCCCCCCCcceEE------ECcCHHHHhhcCCeecccccccc
Confidence 5777755444 999 99999999999999999999986
No 13
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=97.89 E-value=1.7e-06 Score=73.72 Aligned_cols=33 Identities=58% Similarity=0.916 Sum_probs=29.7
Q ss_pred ccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccC
Q psy977 250 VKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKR 288 (485)
Q Consensus 250 ~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkr 288 (485)
|||+|.+|+| ||+ +|+++++||+||+|+|||||
T Consensus 61 ~Kv~r~~~~~gKg~~W~------l~p~~~~~f~~g~~~rrr~r 97 (97)
T 2hdc_A 61 VKIPREPGNPGKGNYWT------LDPQSEDMFDNGSFLRRRKR 97 (97)
T ss_dssp EEECSCTTCSSSCCEEE------CCTTHHHHHHHSCCCSSSCC
T ss_pred eecCCCCCCCCCcceEE------ECcCHHHHHhCCCccCCCCC
Confidence 6788876666 999 99999999999999999997
No 14
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=97.88 E-value=2.5e-06 Score=74.24 Aligned_cols=38 Identities=55% Similarity=0.858 Sum_probs=25.1
Q ss_pred ccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccCCCCCC
Q psy977 250 VKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKRFKLPK 293 (485)
Q Consensus 250 ~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkrfk~~~ 293 (485)
|||+|.+|+| ||+ +|+++++||+||+|+|||+||+.-+
T Consensus 62 ~Kv~r~~~~~GKG~~W~------l~p~~~~~f~~g~~~Rrr~~~~~~~ 103 (109)
T 2hfh_A 62 VKIPREPGNPGKGNYWT------LDPQSEDMFDNGSFLRRRKRFKRLQ 103 (109)
T ss_dssp BCCTTCTTSCSSCCCBB------CCTTCCHHHHSSSCC----------
T ss_pred hcCCCCCCCCCCceeEE------ECccHHHHHhCCCcccCcccccccc
Confidence 6788876665 999 9999999999999999999998654
No 15
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=97.71 E-value=5.7e-06 Score=70.84 Aligned_cols=35 Identities=34% Similarity=0.475 Sum_probs=13.3
Q ss_pred ccccCCCCCC-----CCccccccchhhhhhhhhcccchhhcccCCC
Q psy977 250 VKMDRYSGQP-----YLPAQQSEHSVSAALDMFENGSFLRRRKRFK 290 (485)
Q Consensus 250 ~~~~~~~~~~-----~~~~~~~~~~~~~~~dmf~ngsflrRRkrfk 290 (485)
|||+|.+|.| ||+ +||++++||++|.|.||||||.
T Consensus 61 ~kv~r~~~~p~gkg~~W~------l~p~~~~~f~~g~~~rrr~r~~ 100 (100)
T 1kq8_A 61 VKVLRDPSRPWGKDNYWM------LNPNSEYTFADGVFRRRRYRLS 100 (100)
T ss_dssp EECSSCSCCSSSCCCCEE------CCC-------------------
T ss_pred eecCCCCCCCCCCCeEEE------ECcCHHHHHhCCCcccCCCCCC
Confidence 7888877665 999 9999999999999999999983
No 16
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=96.32 E-value=0.00056 Score=59.61 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=28.0
Q ss_pred ccccCCCCCC----CCccccccchhhhhhhhhcccchhhcccC
Q psy977 250 VKMDRYSGQP----YLPAQQSEHSVSAALDMFENGSFLRRRKR 288 (485)
Q Consensus 250 ~~~~~~~~~~----~~~~~~~~~~~~~~~dmf~ngsflrRRkr 288 (485)
|||+|..+.+ ||+ +|+++++||++|.|.|||+|
T Consensus 75 ~Kv~r~~~~~GKG~~W~------l~p~~~~~~~~~~~r~rr~r 111 (111)
T 2c6y_A 75 IKVPRSQEEPGKGSFWR------IDPASESKLIEQAFRKRRPR 111 (111)
T ss_dssp EEECCCTTSCCSSCEEE------ECHHHHHHHHHHHTCCCCCC
T ss_pred ccccCCCCCCCCcceEE------eChhHHHhhhcccccccCCC
Confidence 5777754444 999 99999999999999999987
No 17
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=79.22 E-value=1.8 Score=35.69 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=28.1
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy977 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (485)
Q Consensus 17 SYaaLIamAI~sSP-~krLTLsEIYewI~~~FP 48 (485)
+|..||..||.... .+.-+++-|..||+.+|.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (88)
T 1uss_A 9 TYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS 41 (88)
T ss_dssp CHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCC
Confidence 89999999999765 447899999999999965
No 18
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=77.17 E-value=1.9 Score=34.71 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.9
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy977 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (485)
Q Consensus 17 SYaaLIamAI~sSP-~krLTLsEIYewI~~~FP 48 (485)
+|.+||..||.... .+.-+++.|..||+.+|+
T Consensus 6 ~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~ 38 (78)
T 1uhm_A 6 SYRELIIEGLTALKERKGSSRPALKKFIKENYP 38 (78)
T ss_dssp CHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCC
Confidence 89999999999744 456899999999999976
No 19
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=74.02 E-value=2.6 Score=35.05 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCCC-CCCCHHHHHHHHHhcCC
Q psy977 17 SYISLTAMAIWSSPE-KMLPLSDIYRFIADRFP 48 (485)
Q Consensus 17 SYaaLIamAI~sSP~-krLTLsEIYewI~~~FP 48 (485)
+|.+||..||....+ +.-+++-|-.||+.+|.
T Consensus 9 ~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~ 41 (90)
T 1hst_A 9 TYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYK 41 (90)
T ss_dssp CHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcc
Confidence 899999999998654 46899999999999976
No 20
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=71.03 E-value=1.9 Score=35.43 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=28.2
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCCC
Q psy977 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFPY 49 (485)
Q Consensus 17 SYaaLIamAI~sSP-~krLTLsEIYewI~~~FPY 49 (485)
+|.+||..||.... .+.-+++.|..||+++|+-
T Consensus 11 ~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~ 44 (88)
T 2rqp_A 11 KMDAILTEAIKACFQKSGASVVAIRKYIIHKYPS 44 (88)
T ss_dssp CHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCST
T ss_pred CHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCC
Confidence 89999999998743 4567999999999999873
No 21
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=70.79 E-value=2.7 Score=35.10 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=28.0
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy977 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (485)
Q Consensus 17 SYaaLIamAI~sSP-~krLTLsEIYewI~~~FP 48 (485)
+|..||..||.... .+.-+++-|..||+.+|.
T Consensus 9 ~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~ 41 (93)
T 1ust_A 9 SYRELIIEGLTALKERKGSSRPALKKFIKENYP 41 (93)
T ss_dssp CHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCC
Confidence 89999999999865 447899999999999975
No 22
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=49.40 E-value=5 Score=32.83 Aligned_cols=32 Identities=19% Similarity=0.058 Sum_probs=26.9
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhcCC
Q psy977 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADRFP 48 (485)
Q Consensus 17 SYaaLIamAI~sSP-~krLTLsEIYewI~~~FP 48 (485)
+|.+||..||.... .+.-+++-|..+|..+|.
T Consensus 7 ~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~ 39 (83)
T 2lso_A 7 KYSQLVVETIRRLGERNGSSLAKIYTEAKKVPW 39 (83)
Confidence 99999999999755 446788899999999874
No 23
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=25.64 E-value=19 Score=35.30 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHH--HHHHHhcCCCcccCcccccc
Q psy977 18 YISLTAMAIWSSPEKMLPLSDI--YRFIADRFPYYRRNTQRWQN 59 (485)
Q Consensus 18 YaaLIamAI~sSP~krLTLsEI--YewI~~~FPYYR~~~~GWQN 59 (485)
-..||...|.-.|++|+|..|+ ++||.+ .|||+.- .|++
T Consensus 261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~-Hp~F~~i--dw~~ 301 (311)
T 4aw0_A 261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKA-HPFFESV--TWEN 301 (311)
T ss_dssp HHHHHHHHSCSSGGGSTTSGGGTCHHHHHT-SGGGTTC--CCTT
T ss_pred HHHHHHHHccCCHhHCcChHHHcCCHHHHC-CCCcCCC--CHHH
Confidence 4579999999999999999998 678875 5999754 4763
No 24
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=25.04 E-value=10 Score=29.84 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=25.8
Q ss_pred CHHHHHHHHHhcCC-CCCCCHHHHHHHHHhc
Q psy977 17 SYISLTAMAIWSSP-EKMLPLSDIYRFIADR 46 (485)
Q Consensus 17 SYaaLIamAI~sSP-~krLTLsEIYewI~~~ 46 (485)
+|..||..||.... .+.-+++-|..||+++
T Consensus 5 ~y~~mI~~AI~alker~GsS~~AI~Kyi~~~ 35 (75)
T 1ghc_A 5 SVTELITKAVSASKERKGLSLAALKKALAAG 35 (75)
T ss_dssp SHHHHHHHHHHHCSSSSCCTTSSGGGSSSSS
T ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHc
Confidence 79999999999864 4567888999999998
Done!