RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy977
(485 letters)
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double
helix, transcription-DNA complex; HET: DNA; 2.50A {Homo
sapiens} PDB: 1d5v_A
Length = 102
Score = 212 bits (541), Expect = 4e-68
Identities = 71/100 (71%), Positives = 85/100 (85%)
Query: 12 QKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCF 71
KPPYSYISL MAI +P KML LS+IY++I D FPYYR N QRWQNS+RH+LSFNDCF
Sbjct: 2 AKPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCF 61
Query: 72 VKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKL 111
VK+ R PD+PGKG+YWALHP++ +MFENG +LRR+KRFKL
Sbjct: 62 VKVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFKL 101
Score = 41.5 bits (98), Expect = 4e-05
Identities = 13/20 (65%), Positives = 18/20 (90%)
Query: 272 AALDMFENGSFLRRRKRFKL 291
++ +MFENG +LRR+KRFKL
Sbjct: 82 SSGNMFENGCYLRRQKRFKL 101
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
norvegicus} SCOP: a.4.5.14
Length = 109
Score = 211 bits (538), Expect = 1e-67
Identities = 68/104 (65%), Positives = 76/104 (73%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 3 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 62
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFKLPKVDQ 116
KIPR P PGKG YW L P + DMF+NGSFLRRRKRFK +
Sbjct: 63 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRLQHHH 106
Score = 41.1 bits (97), Expect = 7e-05
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 272 AALDMFENGSFLRRRKRFKLPKVDQ 296
+ DMF+NGSFLRRRKRFK +
Sbjct: 82 QSEDMFDNGSFLRRRKRFKRLQHHH 106
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
domain, forkhead transcription factors, interleukin
enhancer binding factor; 2.4A {Homo sapiens} SCOP:
a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Length = 111
Score = 209 bits (535), Expect = 5e-67
Identities = 46/103 (44%), Positives = 61/103 (59%)
Query: 6 RETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNL 65
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNL
Sbjct: 9 MGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNL 68
Query: 66 SFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKR 108
S N F+K+PR + PGKG++W + PA+ +F +RR R
Sbjct: 69 SLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
Score = 35.4 bits (82), Expect = 0.007
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 272 AALDMFENGSFLRRRKR 288
A+ +F +RR R
Sbjct: 95 ASESKLIEQAFRKRRPR 111
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
winged helix protein, protein/DNA complex; HET: DNA; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 97
Score = 205 bits (525), Expect = 9e-66
Identities = 66/96 (68%), Positives = 73/96 (76%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKR 108
KIPR P PGKG YW L P + DMF+NGSFLRRRKR
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
Score = 36.1 bits (84), Expect = 0.003
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 272 AALDMFENGSFLRRRKR 288
+ DMF+NGSFLRRRKR
Sbjct: 81 QSEDMFDNGSFLRRRKR 97
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
winged helix protein, structure, transcription; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 100
Score = 197 bits (502), Expect = 2e-62
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI S L L++I ++ +FP++R + W+NS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 73 KIPRRPDRP-GKGAYWALHPAALDMFENGSFLRRRKRF 109
K+ R P RP GK YW L+P + F +G F RRR R
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYRL 99
Score = 37.3 bits (87), Expect = 0.001
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 272 AALDMFENGSFLRRRKRF 289
+ F +G F RRR R
Sbjct: 82 NSEYTFADGVFRRRRYRL 99
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Length = 142
Score = 171 bits (434), Expect = 8e-52
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
Query: 2 PRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRR-NTQRWQNS 60
P + ++PPYSY+++ AI S+ K + L DIY +I D FPY++ W+NS
Sbjct: 7 PSASWQNSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAKPGWKNS 66
Query: 61 LRHNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFK 110
+RHNLS +D FV R GK ++W +HP+A +
Sbjct: 67 IRHNLSLHDMFV---RETSANGKVSFWTIHPSANRYLTLDQVFKPLDPGS 113
Score = 26.8 bits (59), Expect = 9.3
Identities = 1/19 (5%), Positives = 3/19 (15%)
Query: 272 AALDMFENGSFLRRRKRFK 290
+A +
Sbjct: 95 SANRYLTLDQVFKPLDPGS 113
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
monomer, winged-helix, magnesium, transcription/DNA
complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F
2kiu_A 3qrf_F
Length = 93
Score = 160 bits (406), Expect = 3e-48
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 13/98 (13%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI S ++ L L++IY + F Y+RRN W+N++RHNLS + CFV
Sbjct: 3 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 62
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFK 110
++ KGA W + + +RR +
Sbjct: 63 RVEN-----VKGAVWTVDEV--------EYQKRRSQKI 87
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal
rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB:
3co7_C* 2k86_A 2uzk_A
Length = 117
Score = 156 bits (396), Expect = 2e-46
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 8 TYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLR 62
+ + SY L AI SS EK L LS IY ++ PY++ ++ W+NS+R
Sbjct: 6 SRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIR 65
Query: 63 HNLSFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFK 110
HNLS + F+++ + GK ++W L+P + ++G RRR
Sbjct: 66 HNLSLHSKFIRVQN--EGTGKSSWWMLNP---EGGKSGKSPRRRAASM 108
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA
binding domain; forkhead BOX, winged helix; 1.87A {Homo
sapiens} SCOP: a.4.5.14
Length = 85
Score = 150 bits (381), Expect = 1e-44
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNL 65
+ SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS+RHNL
Sbjct: 3 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL 62
Query: 66 SFNDCFVKIPRRPDRPGKGAYWALH 90
S + F+K+ + GK ++W L+
Sbjct: 63 SLHSKFIKVHN--EATGKSSWWMLN 85
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
a.4.5.14
Length = 150
Score = 150 bits (379), Expect = 1e-43
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNL 65
+ SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS+RHNL
Sbjct: 38 NAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL 97
Query: 66 SFNDCFVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKRFK 110
S + F+K+ + GK ++W L+P + ++G RRR
Sbjct: 98 SLHSKFIKVHN--EATGKSSWWMLNP---EGGKSGKAPRRRAASM 137
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 146 bits (371), Expect = 7e-43
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Query: 8 TYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLR 62
+ + SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS+R
Sbjct: 19 SRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIR 78
Query: 63 HNLSFNDCFVKIPRRPDRPGKGAYWALHPAA 93
HNLS + F+K+ + GK ++W L+P
Sbjct: 79 HNLSLHSKFIKVHN--EATGKSSWWMLNPEG 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 2e-06
Identities = 93/580 (16%), Positives = 154/580 (26%), Gaps = 243/580 (41%)
Query: 1 MPRPCRETYGDQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNS 60
+P P D P + L K L +++ ++
Sbjct: 41 LPEPTEGFAADD-EPTTPAELVG--------KFL------GYVSSLVE--PSKVGQFDQV 83
Query: 61 LRHNL-SFNDCFVKIPRRPDRPGKGAYWALH--PAALDMFENGSFLRRRKRFK------- 110
L L F +C+++ G +H A L + + ++ ++ K
Sbjct: 84 LNLCLTEFENCYLE--------GND----IHALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 111 -----LPKVDQS-LLEA------------------------------TYPVLKAENYTSI 134
K S L A TY VL + +
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD----L 187
Query: 135 KETKSEPLKP--TTLSNANKSFS--IDSIIS------SQPS----AALPQSMP-----QP 175
+ +E L T +A K F+ ++ I+ + P ++P S P Q
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTPDKDYLLSIPISCPLIGVIQ- 245
Query: 176 IFSHFHPPVC----LPPPIINPSY------------AAIYAAA-----LHGLLRPPLQML 214
+H+ P + A A +R + +L
Sbjct: 246 -LAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 215 --PG-----AFPPLNLTP-------------PAGSPLLEVVETSCSS-TDSVMQTSVKMD 253
G A+P +L P P SP+L S S+ T +Q V
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--SPML-----SISNLTQEQVQDYVNKT 356
Query: 254 RYSGQPYLPAQQSEHSVSAALDMFENG--SF--------LRR-----RKRFKLPKVDQSL 298
+LPA + V +L NG + L RK +DQS
Sbjct: 357 N----SHLPA--GKQ-VEISL---VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS- 405
Query: 299 LEATYPVLKAENYTSIKETKSEPLKPTTLSNANKSFSIDSIISSQPSAALPQSMPQPIFS 358
I ++ + SN F LP + S
Sbjct: 406 --------------RIPFSERKL----KFSN---RF-------------LP------VAS 425
Query: 359 HFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLLEVVETS 418
FH LL P ++ N++ A + V +T
Sbjct: 426 PFHSH----------------------LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 419 CSSTDSVMQTSVKKDSFGMKAFLS-DFEKILDMRNFQHTH 457
S V+ S+ + L +E F+ TH
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTT---QFKATH 500
Score = 40.4 bits (94), Expect = 0.001
Identities = 34/185 (18%), Positives = 50/185 (27%), Gaps = 53/185 (28%)
Query: 252 MDRYSGQPYLPAQQS-EHSVSAALDMFENGSFLRRRKRFK--LPKVDQSLLEATYPVLKA 308
MD YS +P + S EH + F S L +++F LP+ + P A
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQL--QEQFNKILPEPTEGFAADDEPTTPA 58
Query: 309 E------NYTSIKETKSEP------LKPTTLSNANKSF----SIDSIISSQPSAALPQSM 352
E Y S S+ L L+ + I ++ A L Q
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLN-LCLTEFENCYLEGNDIHALA-----AKLLQEN 112
Query: 353 PQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFPPLNLTPPAGSPLL 412
+ +I Y A RP + S L
Sbjct: 113 DTTLVKTKE--------LI-----KNYITARIMAKRP-------------FDKKSNSALF 146
Query: 413 EVVET 417
V
Sbjct: 147 RAVGE 151
Score = 35.8 bits (82), Expect = 0.035
Identities = 52/302 (17%), Positives = 90/302 (29%), Gaps = 115/302 (38%)
Query: 82 GKGAYWALHPAALDMFENG-SFLRRRKRFKLPKVDQSLLEATYPVLKA------------ 128
G Y AA D++ + + F + + PV
Sbjct: 1632 GMDLY-KTSKAAQDVWNRADNHFKDTYGFSILDIVI-----NNPVNLTIHFGGEKGKRIR 1685
Query: 129 ENYTSIK-------ETKSEPLKPTTLSNANK-SFS-----IDSIISSQP-----SAALPQ 170
ENY+++ + K+E + ++ +F + + +QP A +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 171 SM----PQPIFSHF--HPPVCLPPPIINPS---YAAIYAAA-----------LH--GLL- 207
+ P + F H S YAA+ + A + G+
Sbjct: 1746 DLKSKGLIPADATFAGH------------SLGEYAALASLADVMSIESLVEVVFYRGMTM 1793
Query: 208 ----------RPPLQML---PGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKMDR 254
R M+ PG + + A L VVE T +++
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVA-ASFSQEA---LQYVVERVGKRTGWLVE------- 1842
Query: 255 YSGQP--Y-LPAQQSEHSVSA----ALDMFENGSFLRRRKRFKLPKVDQSLLEATYPVLK 307
Y + QQ V+A ALD N L KL K+D L+ + + +
Sbjct: 1843 ----IVNYNVENQQY---VAAGDLRALDTVTN--VL---NFIKLQKIDIIELQKSLSLEE 1890
Query: 308 AE 309
E
Sbjct: 1891 VE 1892
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 2e-04
Identities = 44/304 (14%), Positives = 83/304 (27%), Gaps = 103/304 (33%)
Query: 90 HPAALDMFENGSFLR----RRKRFKLPKVDQSLLEATYPVLKAENYTSIKETKSEPLKPT 145
+P L + +R +K D+ T+I E+ L+P
Sbjct: 326 NPRRLSII--AESIRDGLATWDNWKHVNCDK--------------LTTIIESSLNVLEPA 369
Query: 146 TLSNANKSFSI---DSIISSQPSAAL-------PQSMPQPIFSHFHPPVCLPPPIINPSY 195
S+ + I P+ L +S + + H + P
Sbjct: 370 EYRKMFDRLSVFPPSAHI---PTILLSLIWFDVIKSDVMVVVNKLHKYSLV---EKQPKE 423
Query: 196 AAIYAAALHGL---LRPPLQ-------------MLPGAFPPLNLTPPAGSPLLEVVETSC 239
+ I + + L+ L+ +P F +L PP
Sbjct: 424 STIS---IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP------------- 467
Query: 240 SSTDSVMQTSVKMDRYSGQPYLP-----AQQSEHSVSAALDMFE----NGSFLRRR-KRF 289
+D+Y ++ + E + +F + FL ++ +
Sbjct: 468 -----------YLDQYFYS-HIGHHLKNIEHPER-----MTLFRMVFLDFRFLEQKIRHD 510
Query: 290 KLPKVDQSLLEATYPVLKAENYTS-IKETKSEPLKPTTLSNANKSF--SIDSIISSQPSA 346
+ T LK Y I ++P K L NA F I+ +
Sbjct: 511 STAWNASGSILNTLQQLK--FYKPYI--CDNDP-KYERLVNAILDFLPKIEENLICSKYT 565
Query: 347 ALPQ 350
L +
Sbjct: 566 DLLR 569
>2r1f_A Protein YCEG, predicted aminodeoxychorismate lyase; structural
genomics, unknown function, PFAM 02618, PSI-2, PR
structure initiative; 2.21A {Escherichia coli}
Length = 270
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 186 LPP-PIINPSYAAIYAAA 202
LPP I P ++ AAA
Sbjct: 209 LPPGAIATPGADSLKAAA 226
Score = 30.3 bits (69), Expect = 1.3
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 366 LPP-PIINPSYAAIYAAA 382
LPP I P ++ AAA
Sbjct: 209 LPPGAIATPGADSLKAAA 226
>2bpa_2 Protein (subunit of bacteriophage PHIX174); protein-DNA complex,
single strand, icosahedral virus, virus/DNA complex;
HET: DNA; 3.00A {Enterobacteria phage PHIX174} SCOP:
b.121.5.1 PDB: 1cd3_G 1al0_G*
Length = 175
Score = 28.7 bits (63), Expect = 3.2
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 215 PGAFPPLNLTPPAGSPLLEVVETSCSSTDSVMQTSVKMDRYSGQPYLPAQQSEHSVSAAL 274
P + P+ TP A S L + ++ + ++MD + A SV A +
Sbjct: 25 PASSAPVLQTPKATSSTLYFDSLTVNAGNGGFLHCIQMD-----TSVNAANQVVSVGADI 79
Query: 275 DMFENGSFLRRRKRFKLPKVDQSLLEAT--YPV--LKAENYTSIKETKSEPLKPTTLSN 329
+ F RF+ V +L A YP+ Y ++K+ + + P T N
Sbjct: 80 AFDADPKFFACLVRFESSSVPTTLPTAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGN 138
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 28.6 bits (63), Expect = 6.4
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 160 ISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFP 219
+S PQ+ Q P+ P + P A + + PP +P
Sbjct: 1 MSHHKKRVYPQAQLQY--GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58
Query: 220 PLNLTPPAGSP 230
LTP
Sbjct: 59 QQFLTPAQEQL 69
Score = 28.6 bits (63), Expect = 6.4
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 340 ISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSYAAIYAAALHGLLRPPLQMLPGAFP 399
+S PQ+ Q P+ P + P A + + PP +P
Sbjct: 1 MSHHKKRVYPQAQLQY--GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58
Query: 400 PLNLTPPAGSP 410
LTP
Sbjct: 59 QQFLTPAQEQL 69
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 27.8 bits (62), Expect = 9.8
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 152 KSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSY 195
S++ S +++ PS +M + + F +P P I S+
Sbjct: 367 TSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSF 410
Score = 27.8 bits (62), Expect = 9.8
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 332 KSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSY 375
S++ S +++ PS +M + + F +P P I S+
Sbjct: 367 TSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSF 410
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0507 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,357,196
Number of extensions: 435974
Number of successful extensions: 1060
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1021
Number of HSP's successfully gapped: 42
Length of query: 485
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 388
Effective length of database: 3,993,456
Effective search space: 1549460928
Effective search space used: 1549460928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)