RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy977
(485 letters)
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 159 bits (404), Expect = 2e-48
Identities = 66/96 (68%), Positives = 73/96 (76%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI SP+K L LS I FI++RFPYYR WQNS+RHNLS NDCFV
Sbjct: 2 KPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKR 108
KIPR P PGKG YW L P + DMF+NGSFLRRRKR
Sbjct: 62 KIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
Score = 32.6 bits (74), Expect = 0.020
Identities = 13/17 (76%), Positives = 15/17 (88%)
Query: 272 AALDMFENGSFLRRRKR 288
+ DMF+NGSFLRRRKR
Sbjct: 81 QSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 159 bits (404), Expect = 2e-48
Identities = 46/98 (46%), Positives = 61/98 (62%)
Query: 11 DQKPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDC 70
D KPPYSY L AI +P+K L L+ IY I +PYYR + WQNS+RHNLS N
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRY 60
Query: 71 FVKIPRRPDRPGKGAYWALHPAALDMFENGSFLRRRKR 108
F+K+PR + PGKG++W + PA+ +F +RR R
Sbjct: 61 FIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
Score = 28.3 bits (63), Expect = 0.61
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 272 AALDMFENGSFLRRRKR 288
A+ +F +RR R
Sbjct: 82 ASESKLIEQAFRKRRPR 98
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 150 bits (381), Expect = 4e-45
Identities = 59/91 (64%), Positives = 73/91 (80%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
KPPYSYI+L MAI ++PEK + L+ IY+FI DRFP+YR N Q WQNS+RHNLS N+CFV
Sbjct: 4 KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFV 63
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGSFL 103
K+PR +PGKG+YW L P + +MFENGSFL
Sbjct: 64 KVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 75
Score = 120 bits (301), Expect = 8e-34
Identities = 37/75 (49%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 18 YISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFVKIPRR 77
YI+L MAI S L L++I ++ +FP++R + W+NS+RHNLS NDCFVK+ R
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 78 PDRP-GKGAYWALHP 91
P RP GK YW L+P
Sbjct: 61 PSRPWGKDNYWMLNP 75
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 118 bits (298), Expect = 2e-33
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 13/94 (13%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYRRNTQRWQNSLRHNLSFNDCFV 72
+PP++Y +L AI S ++ L L++IY + F Y+RRN W+N++RHNLS + CFV
Sbjct: 2 RPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFV 61
Query: 73 KIPRRPDRPGKGAYWALHPAALDMFENGSFLRRR 106
++ KGA W + + +RR
Sbjct: 62 RVEN-----VKGAVWTVDEVE--------YQKRR 82
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 115 bits (290), Expect = 4e-32
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 13 KPPYSYISLTAMAIWSSPEKMLPLSDIYRFIADRFPYYR-----RNTQRWQNSLRHNLSF 67
SY L + AI S+PEK L L+ IY ++ PY++ ++ W+NS+RHNLS
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 68 NDCFVKIPRRPDRPGKGAYWALH 90
+ F+K+ + GK ++W L+
Sbjct: 65 HSKFIKVHN--EATGKSSWWMLN 85
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 28.9 bits (64), Expect = 1.4
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 148 SNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSY 195
S+++ S++ S +++ PS +M + + F +P P I S+
Sbjct: 363 SSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSF 410
Score = 28.9 bits (64), Expect = 1.4
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 328 SNANKSFSIDSIISSQPSAALPQSMPQPIFSHFHPPVCLPPPIINPSY 375
S+++ S++ S +++ PS +M + + F +P P I S+
Sbjct: 363 SSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSF 410
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 151
Score = 27.5 bits (60), Expect = 2.0
Identities = 5/23 (21%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 448 LDMRNFQHTHQHIQAGQLRRITG 470
+++R H+ H+ G + ++ G
Sbjct: 4 IEVRT--HSALHVVKGAVVKVLG 24
>d1a41a_ d.163.1.2 (A:) Eukaryotic DNA topoisomerase I, catalytic
core {Vaccinia virus [TaxId: 10245]}
Length = 230
Score = 26.8 bits (59), Expect = 5.3
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 83 KGAYWALHPAALDMFENGSFLRRRK 107
K AY + L+M ++ +FL
Sbjct: 191 KRAY--MATTILEMVKDKNFLDVVS 213
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,792,883
Number of extensions: 83826
Number of successful extensions: 205
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 16
Length of query: 485
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 396
Effective length of database: 1,185,626
Effective search space: 469507896
Effective search space used: 469507896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.2 bits)