BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9770
(811 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 95/468 (20%), Positives = 180/468 (38%), Gaps = 44/468 (9%)
Query: 270 PTGEIVYFVA--AVAVLYNVEEQTQRHYLGHTDDIKCLSIHPNKLLIATGQVAGHDAREG 327
P G+ + + L+N Q + GH+ + ++ P+ IA+ A +
Sbjct: 149 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS-------ASDD 201
Query: 328 KPHIRIWNSVSLFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKS 387
K +++WN ++ G S+ ++FS DG T A D D + +W+
Sbjct: 202 KT-VKLWNRNGQLLQTLTG---HSSSVRGVAFSP-DGQTIASASD---DKTVKLWN---- 249
Query: 388 DRGHKITETKCSVDTVVAAEFHPLDRNNIVTCGKSHINFWTIDAGGTLYKKQG-IFEMIR 446
G + +V F P D I + D L+ + G + + +
Sbjct: 250 RNGQLLQTLTGHSSSVNGVAFRP-DGQTIASASD--------DKTVKLWNRNGQLLQTLT 300
Query: 447 DKPKYVTCLAFTQGGEVLSGDSNGNII-VWTRGSNTISKFIRNVHEGSVFSICVLKEGSI 505
V +AF+ G+ ++ S+ + +W R + H SV+ + +G
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTG--HSSSVWGVAFSPDGQT 358
Query: 506 ISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRN-CILVGSLN 564
I++ D + ++ N Q + H +R V+ Q I + + + + + N
Sbjct: 359 IASASDDKTVKLWNRNGQ---LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Query: 565 LGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATF 624
+ GH+ +W +A P +A D+ V+LW+ + + + F
Sbjct: 416 GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 475
Query: 625 SPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYV 684
SPDG I + + + + + T + ++ V FSPDG+ +A S D + +
Sbjct: 476 SPDGQTI-ASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534
Query: 685 YEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
+ R + TGHSS + + +S D I S S D + WN
Sbjct: 535 WN-----RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 93/468 (19%), Positives = 177/468 (37%), Gaps = 44/468 (9%)
Query: 270 PTGEIVYFVA--AVAVLYNVEEQTQRHYLGHTDDIKCLSIHPNKLLIATGQVAGHDAREG 327
P G+ + + L+N Q + GH+ ++ ++ P+ IA+ A +
Sbjct: 67 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS-------ASDD 119
Query: 328 KPHIRIWNSVSLFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKS 387
K +++WN ++ G S+ ++FS DG T A D D + +W+
Sbjct: 120 KT-VKLWNRNGQLLQTLTG---HSSSVWGVAFSP-DGQTIASASD---DKTVKLWN---- 167
Query: 388 DRGHKITETKCSVDTVVAAEFHPLDRNNIVTCGKSHINFWTIDAGGTLYKKQG-IFEMIR 446
G + +V F P D I + D L+ + G + + +
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASD--------DKTVKLWNRNGQLLQTLT 218
Query: 447 DKPKYVTCLAFTQGGEVLSGDSNGNII-VWTRGSNTISKFIRNVHEGSVFSICVLKEGSI 505
V +AF+ G+ ++ S+ + +W R + H SV + +G
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVNGVAFRPDGQT 276
Query: 506 ISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRN-CILVGSLN 564
I++ D + ++ N Q + H + V+ Q I + + + + + N
Sbjct: 277 IASASDDKTVKLWNRNGQ---LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333
Query: 565 LGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATF 624
+ GH+ +W +A P +A D+ V+LW+ + + + F
Sbjct: 334 GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 393
Query: 625 SPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYV 684
SPDG I + + + + + T + + V FSPD + +A S D + +
Sbjct: 394 SPDGQ-TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL 452
Query: 685 YEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
+ R + TGHSS + + +S D I S S D + WN
Sbjct: 453 WN-----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 495
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 21/244 (8%)
Query: 570 VVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGS 629
+ GH+ +W +A P +A D+ V+LW+ + + + FSPDG
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 111
Query: 630 IIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSG 689
I + + + + + T + + V FSPDG+ +A S D + ++
Sbjct: 112 -TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN--- 167
Query: 690 DSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN-AGTCRQ--IPQSSQLR 746
R + TGHSS + + +S D I S S D + WN G Q SS +R
Sbjct: 168 --RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR 225
Query: 747 DVVWESNSCTLTFT----TIGIWPEGAD--------GTDVNSCERSHDARVIATGDDFGK 794
V + + T+ T+ +W + VN D + IA+ D
Sbjct: 226 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKT 285
Query: 795 LKLY 798
+KL+
Sbjct: 286 VKLW 289
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 234
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 235 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 293
Query: 756 TLTFTTIG 763
T I
Sbjct: 294 HPTENIIA 301
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 85
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLK 107
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 69
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 124
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 296 TENIIASAALENDKTIKLWKS 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 130/291 (44%), Gaps = 22/291 (7%)
Query: 484 KFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSE 543
KF H +V S+ G ++A D +L++ +E I+ H GI V+
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSAD-KLIKIWGAYDGK-FEKTISGHKLGISDVAW 76
Query: 544 GRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAHPSLSQFLTAGFDRIVQL 601
S L+V + + L + ++ G L GH++ ++ +P + ++ FD V++
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 602 WDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVMDSETREAY-SIHTDGNE 659
WD + + + SA F+ DGS+I+ G + D+ + + ++ D N
Sbjct: 137 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 660 PIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC----TGHSS--FITHLDWS 713
P+ VKFSP+GK + + DN + +++ YS+ G+C TGH + + ++S
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLKTYTGHKNEKYCIFANFS 248
Query: 714 -EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSCTLTFTTIG 763
+I S S D + WN T ++I Q Q V S +C T I
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTACHPTENIIA 298
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A A I+IW + G+FE++IS
Sbjct: 24 GHTKAVSSVKFSPNGEWLA--------ASSADKLIKIWGAYD---------GKFEKTISG 66
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 121
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 293 TENIIASAALENDKTIKLWKS 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 228
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 287
Query: 756 TLTFTTIG 763
T I
Sbjct: 288 HPTENIIA 295
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 79
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLK 101
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 114/319 (35%), Gaps = 40/319 (12%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 63
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 118
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLG-FSPVVLGHTDELWALAAHPSL 587
E S G ++ G+ N + + +L + GHTD + + A HP+
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291
Query: 588 SQFLTAGF--DRIVQLWDS 604
+ +A D+ ++LW S
Sbjct: 292 NIIASAALENDKTIKLWKS 310
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 58 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 117
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 118 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 229
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 230 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 288
Query: 756 TLTFTTIG 763
T I
Sbjct: 289 HPTENIIA 296
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 25 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 80
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLK 102
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 64
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 119
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 290
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 291 TENIIASAALENDKTIKLWKS 311
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 53 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 112
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 113 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 173 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 224
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 225 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 283
Query: 756 TLTFTTIG 763
T I
Sbjct: 284 HPTENIIA 291
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 20 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 75
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLK 97
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 114/319 (35%), Gaps = 40/319 (12%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 59
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 114
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLG-FSPVVLGHTDELWALAAHPSL 587
E S G ++ G+ N + + +L + GHTD + + A HP+
Sbjct: 228 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 287
Query: 588 SQFLTAGF--DRIVQLWDS 604
+ +A D+ ++LW S
Sbjct: 288 NIIASAALENDKTIKLWKS 306
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 234
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 235 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 293
Query: 756 TLTFTTIG 763
T I
Sbjct: 294 HPTENIIA 301
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 85
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLK 107
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 27 GHTKAVSSVKFSPNGEWLAS--------SSADKLIKIWGAYD---------GKFEKTISG 69
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 124
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 296 TENIIASAALENDKTIKLWKS 316
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 56 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 115
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 116 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 227
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 228 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 286
Query: 756 TLTFTTIG 763
T I
Sbjct: 287 HPTENIIA 294
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 23 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 78
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLK 100
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 20 GHTKAVSSVKFSPNGEWLAS--------SSADKLIKIWGAYD---------GKFEKTISG 62
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 117
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 231 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 288
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 289 TENIIASAALENDKTIKLWKS 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 57 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 116
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 117 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 228
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 287
Query: 756 TLTFTTIG 763
T I
Sbjct: 288 HPTENIIA 295
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 24 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 79
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLK 101
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 63
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 118
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 290 TENIIASAALENDKTIKLWKS 310
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 231
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 290
Query: 756 TLTFTTIG 763
T I
Sbjct: 291 HPTENIIA 298
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 82
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLK 104
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 24 GHTKAVSSVKFSPNGEWLAS--------SSADKLIKIWGAYD---------GKFEKTISG 66
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 121
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++L+ S
Sbjct: 293 TENIIASAALENDKTIKLYKS 313
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/204 (17%), Positives = 79/204 (38%), Gaps = 30/204 (14%)
Query: 544 GRGSQLIVGTTRNCILVGSLNLGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWD 603
GRGS+ + N + GHT + ++ P+ ++ D+++++W
Sbjct: 6 GRGSEFV-----------KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG 54
Query: 604 SMSHSVVWSKDIAEQA---QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEP 660
+ + K I+ +S D ++++ + D + + +
Sbjct: 55 AYDGK--FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 661 IQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC----TGHSSFITHLDWSEDS 716
+ F+P L+ GS D + +++V + G+C HS ++ + ++ D
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDV--------KTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 717 MYIRSNSGDYELLYWN--AGTCRQ 738
I S+S D W+ +G C +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLK 188
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 231
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 290
Query: 756 TLTFTTIG 763
T I
Sbjct: 291 HPTENIIA 298
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 82
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLK 104
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 24 GHTKAVSSVKFSPNGEWLAS--------SSADKLIKIWGAYD---------GKFEKTISG 66
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 121
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++L+ S
Sbjct: 293 TENIIASAALENDKTIKLFKS 313
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/204 (17%), Positives = 79/204 (38%), Gaps = 30/204 (14%)
Query: 544 GRGSQLIVGTTRNCILVGSLNLGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWD 603
GRGS+ + N + GHT + ++ P+ ++ D+++++W
Sbjct: 6 GRGSEFV-----------KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWG 54
Query: 604 SMSHSVVWSKDIAEQA---QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEP 660
+ + K I+ +S D ++++ + D + + +
Sbjct: 55 AYDGK--FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY 112
Query: 661 IQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC----TGHSSFITHLDWSEDS 716
+ F+P L+ GS D + +++V + G+C HS ++ + ++ D
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDV--------KTGKCLKTLPAHSDPVSAVHFNRDG 164
Query: 717 MYIRSNSGDYELLYWN--AGTCRQ 738
I S+S D W+ +G C +
Sbjct: 165 SLIVSSSYDGLCRIWDTASGQCLK 188
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 62 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 121
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 122 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 233
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 234 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 292
Query: 756 TLTFTTIG 763
T I
Sbjct: 293 HPTENIIA 300
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 29 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 84
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLK 106
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 26 GHTKAVSSVKFSPNGEWLAS--------SSADKLIKIWGAYD---------GKFEKTISG 68
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 123
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 294
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 295 TENIIASAALENDKTIKLWKS 315
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 63 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 122
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 123 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 234
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 235 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 293
Query: 756 TLTFTTIG 763
T I
Sbjct: 294 HPTENIIA 301
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 30 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 85
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLK 107
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 27 GHTKAVSSVKFSPNGEWLAS--------SSADKLIKIWGAYD---------GKFEKTISG 69
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 124
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 296 TENIIASAALENDKTIKLWKS 316
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 81 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 140
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 141 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 252
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 253 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 311
Query: 756 TLTFTTIG 763
T I
Sbjct: 312 HPTENIIA 319
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 48 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 103
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLK 125
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 87
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 142
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 143 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 313
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 314 TENIIASAALENDKTIKLWKS 334
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 74 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 133
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 134 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 245
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 246 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 304
Query: 756 TLTFTTIG 763
T I
Sbjct: 305 HPTENIIA 312
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 41 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 96
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLK 118
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 38 GHTKAVSSVKFSPNGEWLASS--------SADKLIKIWGAYD---------GKFEKTISG 80
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 135
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 136 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 306
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 307 TENIIASAALENDKTIKLWKS 327
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 79 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 138
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 139 PQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 250
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 251 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT-KEIVQKLQGHTDVVISTAC 309
Query: 756 TLTFTTIG 763
T I
Sbjct: 310 HPTENIIA 317
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 46 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 101
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLK 123
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 85
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 140
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI--WNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 312 TENIIASAALENDKTIKLWKS 332
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD-------YSK-GKCLK 231
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT-KEIVQKLQGHTDVVISTAC 290
Query: 756 TLTFTTIG 763
T I
Sbjct: 291 HPTENIIA 298
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 82
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLK 104
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 115/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 24 GHTKAVSSVKFSPNGEWLASS--------SADKLIKIWGAYD---------GKFEKTISG 66
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 121
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPT--GYE 528
+W S K + + V + G I A D L +D + Y
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI--WNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 293 TENIIASAALENDKTIKLWKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 114/248 (45%), Gaps = 20/248 (8%)
Query: 527 YEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCIL-VGSLNLGFSPVVL-GHTDELWALAAH 584
+E I+ H GI V+ S L+V + + L + ++ G L GH++ ++ +
Sbjct: 60 FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFN 119
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSAT-FSPDGSIIIVGCIAGRWLVM 643
P + ++ FD V++WD + + + SA F+ DGS+I+ G +
Sbjct: 120 PQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 644 DSETREAY-SIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRC-- 700
D+ + + ++ D N P+ VKFSP+GK + + DN + +++ YS+ G+C
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD-------YSK-GKCLK 231
Query: 701 --TGHSS--FITHLDWS-EDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVVWESNSC 755
TGH + + ++S +I S S D + WN T ++I Q Q V S +C
Sbjct: 232 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT-KEIVQKLQGHTDVVISTAC 290
Query: 756 TLTFTTIG 763
T I
Sbjct: 291 HPTENIIA 298
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
+ + VKFSP+G+ LA S D I ++ K+ + +GH I+ + WS DS
Sbjct: 27 KAVSSVKFSPNGEWLASSSADKLIKIW--GAYDGKFEKT--ISGHKLGISDVAWSSDSNL 82
Query: 719 IRSNSGDYELLYWN--AGTCRQ 738
+ S S D L W+ +G C +
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLK 104
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/321 (19%), Positives = 114/321 (35%), Gaps = 44/321 (13%)
Query: 297 GHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSIIGIGEFERSISC 356
GHT + + PN +A+ I+IW + G+FE++IS
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSS--------ADKLIKIWGAYD---------GKFEKTISG 66
Query: 357 LSFSKAD---GGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDR 413
+D V +D + +WD G + K + V F+P +
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWD---VSSGKCLKTLKGHSNYVFCCNFNP--Q 121
Query: 414 NNIVTCGK--SHINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE-VLSGDSNG 470
+N++ G + W + G L + + V+ + F + G ++S +G
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCL-------KTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDG--RLLQFDSNLQPTGYE 528
+W S K + + V + G I A D +L + Y
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Query: 529 AQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVL---GHTDELWALAAHP 585
E S G ++ G+ N + + NL +V GHTD + + A HP
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYI--WNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 586 SLSQFLTAGF--DRIVQLWDS 604
+ + +A D+ ++LW S
Sbjct: 293 TENIIASAALENDKTIKLWKS 313
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/307 (24%), Positives = 121/307 (39%), Gaps = 51/307 (16%)
Query: 447 DKPKYVTCLAFTQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSII 506
D V C+ F+ GE L+ G N ++ R V +GS+ + S
Sbjct: 62 DHTSVVCCVKFSNDGEYLA-----------TGCNKTTQVYR-VSDGSLVARL-----SDD 104
Query: 507 SAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVS-EGRGSQLIVGTTRNCILVGSL-N 564
SA KD L S+ Y IR+V G L G I + + N
Sbjct: 105 SAANKDPENLNTSSSPSSDLY----------IRSVCFSPDGKFLATGAEDRLIRIWDIEN 154
Query: 565 LGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATF 624
++ GH ++++L PS + ++ DR V++WD + + I + +
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214
Query: 625 SP-DGSIIIVGCIAGRWLVMDSET----------REAYSIHTDGNEPIQVVKFSPDGKLL 673
SP DG I G + V DSET E+ + H D + V F+ DG+ +
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS---VYSVVFTRDGQSV 271
Query: 674 ALGSRDNYIYVYEVSGDSR----KYSRVGRC----TGHSSFITHLDWSEDSMYIRSNSGD 725
GS D + ++ + + K G C GH F+ + +++ YI S S D
Sbjct: 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331
Query: 726 YELLYWN 732
+L+W+
Sbjct: 332 RGVLFWD 338
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 661 IQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIR 720
I+ V FSPDGK LA G+ D I ++++ ++RK + GH I LD+ +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI--ENRKIVMI--LQGHEQDIYSLDYFPSGDKLV 181
Query: 721 SNSGDYELLYWN--AGTC 736
S SGD + W+ G C
Sbjct: 182 SGSGDRTVRIWDLRTGQC 199
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 620 QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRD 679
+S FSPDG + G + D E R+ I + I + + P G L GS D
Sbjct: 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 680 NYIYVYEVSGDSRKYSRVGRCTGHSSF---ITHLDWSE-DSMYIRSNSGDYELLYWNAGT 735
+ ++++ R G+C+ S +T + S D YI + S D + W++ T
Sbjct: 187 RTVRIWDL--------RTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 621 SATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDN 680
S +SPDG + G I G + D T + PI+ + FSPD +LL S D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDG 228
Query: 681 YIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQIP 740
YI +Y+V + + G +GH+S++ ++ + D + S+S D + W+ GT +
Sbjct: 229 YIKIYDV----QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH 284
Query: 741 QSSQLRDVVW 750
+D VW
Sbjct: 285 TFFDHQDQVW 294
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 106/282 (37%), Gaps = 20/282 (7%)
Query: 463 VLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRL----LQF 518
++S +G +IVW + T + + V + G I+ GG D + L F
Sbjct: 79 IVSSSQDGKVIVWDSFT-TNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137
Query: 519 DSNLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRN--CILVGSLNLGFSPVVLGHTD 576
D N + +A H + S I+ + + C L + GH
Sbjct: 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGA 197
Query: 577 ELWALAAHPSLS--QFLTAGFDRIVQLWDSMSHSVVWSKDIAEQ-AQSATFSPDGSIIIV 633
++ L PS + F++ G D+ +WD S V + + E S + P G
Sbjct: 198 DVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS 257
Query: 634 GCIAGRWLVMDSETREAYSIHTDGNEPI----QVVKFSPDGKLLALGSRDNYIYVYEVSG 689
G + D +I++ E I V FS G+LL G D I V++V
Sbjct: 258 GSDDATCRLYDLRADREVAIYS--KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV-- 313
Query: 690 DSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYW 731
K SRV GH + ++ L S D S S D+ L W
Sbjct: 314 --LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Query: 638 GRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRK--YS 695
G+ +V DS T T + ++P G +A G DN VY ++ D + +
Sbjct: 86 GKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAA 145
Query: 696 RVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
+ H+++++ ++ M I + SGD W+
Sbjct: 146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWD 182
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 8/162 (4%)
Query: 571 VLGHTD-ELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQ----SATFS 625
V H D W LA +P+ + + G DR +++W + S + ++E Q +S
Sbjct: 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWS 70
Query: 626 PDGSIIIVGCIAGRWLVMDSETREAYSIHT-DGNE-PIQVVKFSPDGKLLALGSRDNYIY 683
P G+ + + + + T +G+E ++ V ++P G LLA SRD ++
Sbjct: 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVW 130
Query: 684 VYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGD 725
V+EV + +Y V H+ + H+ W + S S D
Sbjct: 131 VWEVD-EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 64/166 (38%), Gaps = 10/166 (6%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMS---HSVVWSKDIAEQAQSATFSPDGS 629
GH + +A P + +A FD +W V + + +S ++P G+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 630 IIIVGCIAGR----WLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVY 685
++ C + W V + + E S+ + ++ V + P +LLA S D+ + +Y
Sbjct: 119 LLAT-CSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177
Query: 686 EVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYW 731
D + GH S + L + + S S D + W
Sbjct: 178 REEED--DWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)
Query: 454 CLAFTQGGEVLSGDSNGNIIVWTRGS-NTISKFIRNVHEGSVFSICVLKEGSIISAGGKD 512
C G LS + + +W + T +F+ H+ V S+ + K+ S+I +G +D
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVG--HKSDVMSVDIDKKASMIISGSRD 122
Query: 513 GRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGS--QLIVGTTRNCILVGSLNLGFSPV 570
+ + Q + + +R V + + + + N +V + NL +
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 571 ---VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPD 627
+GH + L A P + +AG D + LW+ + +++ ++ S FSP+
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 242
Query: 628 GSIIIVGCIAG--------RWLVMDSETREAYSIHTDGNEPIQV-VKFSPDGKLLALGSR 678
+ G ++LV D R ++ ++ EP V + +S DG+ L G
Sbjct: 243 RYWLAAATATGIKVFSLDPQYLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 300
Query: 679 DNYIYVYEV 687
DN I V++V
Sbjct: 301 DNVIRVWQV 309
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLY 730
LL SRD + ++++GD +K+ R GHS + + D Y S S D L
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 731 WNAGT 735
W+ T
Sbjct: 86 WDVAT 90
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 26/192 (13%)
Query: 620 QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRD 679
Q T + DG+ + + D T E Y + V ++ GSRD
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 680 NYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDW-SEDSMYIRSNSGDYELLYWNAGTCRQ 738
I V+ + G+C ++ + H DW S+ + + D + +AG +
Sbjct: 123 KTIKVWTIK---------GQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 739 IPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDFGKLKLY 798
+ W N + IG +++N+ S D +IA+ G++ L+
Sbjct: 172 VK--------AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 217
Query: 799 SYPAVQPKLCLS 810
+ A + LS
Sbjct: 218 NLAAKKAMYTLS 229
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)
Query: 454 CLAFTQGGEVLSGDSNGNIIVWTRGS-NTISKFIRNVHEGSVFSICVLKEGSIISAGGKD 512
C G LS + + +W + T +F+ H+ V S+ + K+ S+I +G +D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVG--HKSDVMSVDIDKKASMIISGSRD 128
Query: 513 GRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGS--QLIVGTTRNCILVGSLNLGFSPV 570
+ + Q + + +R V + + + + N +V + NL +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 571 ---VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPD 627
+GH + L A P + +AG D + LW+ + +++ ++ S FSP+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 628 GSIIIVGCIAG--------RWLVMDSETREAYSIHTDGNEPIQV-VKFSPDGKLLALGSR 678
+ G ++LV D R ++ ++ EP V + +S DG+ L G
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 679 DNYIYVYEV 687
DN I V++V
Sbjct: 307 DNVIRVWQV 315
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLY 730
LL SRD + ++++GD +K+ R GHS + + D Y S S D L
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 731 WNAGT 735
W+ T
Sbjct: 92 WDVAT 96
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 26/192 (13%)
Query: 620 QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRD 679
Q T + DG+ + + D T E Y + V ++ GSRD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 680 NYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDW-SEDSMYIRSNSGDYELLYWNAGTCRQ 738
I V+ + G+C ++ + H DW S+ + + D + +AG +
Sbjct: 129 KTIKVWTIK---------GQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 739 IPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDFGKLKLY 798
+ W N + IG +++N+ S D +IA+ G++ L+
Sbjct: 178 VK--------AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 799 SYPAVQPKLCLS 810
+ A + LS
Sbjct: 224 NLAAKKAMYTLS 235
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)
Query: 454 CLAFTQGGEVLSGDSNGNIIVWTRGS-NTISKFIRNVHEGSVFSICVLKEGSIISAGGKD 512
C G LS + + +W + T +F+ H+ V S+ + K+ S+I +G +D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVG--HKSDVMSVDIDKKASMIISGSRD 128
Query: 513 GRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGS--QLIVGTTRNCILVGSLNLGFSPV 570
+ + Q + + +R V + + + + N +V + NL +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 571 ---VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPD 627
+GH + L A P + +AG D + LW+ + +++ ++ S FSP+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 628 GSIIIVGCIAG--------RWLVMDSETREAYSIHTDGNEPIQV-VKFSPDGKLLALGSR 678
+ G ++LV D R ++ ++ EP V + +S DG+ L G
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 679 DNYIYVYEV 687
DN I V++V
Sbjct: 307 DNVIRVWQV 315
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLY 730
LL SRD + ++++GD +K+ R GHS + + D Y S S D L
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 731 WNAGT 735
W+ T
Sbjct: 92 WDVAT 96
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 26/192 (13%)
Query: 620 QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRD 679
Q T + DG+ + + D T E Y + V ++ GSRD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 680 NYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDW-SEDSMYIRSNSGDYELLYWNAGTCRQ 738
I V+ + G+C ++ + H DW S+ + + D + +AG +
Sbjct: 129 KTIKVWTIK---------GQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 739 IPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDFGKLKLY 798
+ W N + IG +++N+ S D +IA+ G++ L+
Sbjct: 178 VK--------AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 799 SYPAVQPKLCLS 810
+ A + LS
Sbjct: 224 NLAAKKAMYTLS 235
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 104/249 (41%), Gaps = 19/249 (7%)
Query: 454 CLAFTQGGEVLSGDSNGNIIVWTRGS-NTISKFIRNVHEGSVFSICVLKEGSIISAGGKD 512
C G LS + + +W + T +F+ H+ V S+ + K+ S+I +G +D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVG--HKSDVMSVDIDKKASMIISGSRD 128
Query: 513 GRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGS--QLIVGTTRNCILVGSLNLGFSPV 570
+ + Q + + +R V + + + + N +V + NL +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 571 ---VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPD 627
+GH + L A P + +AG D + LW+ + +++ ++ S FSP+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 628 GSIIIVGCIAG--------RWLVMDSETREAYSIHTDGNEPIQV-VKFSPDGKLLALGSR 678
+ G ++LV D R ++ ++ EP V + +S DG+ L G
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD--LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYT 306
Query: 679 DNYIYVYEV 687
DN I V++V
Sbjct: 307 DNVIRVWQV 315
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLY 730
LL SRD + ++++GD +K+ R GHS + + D Y S S D L
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 731 WNAGT 735
W+ T
Sbjct: 92 WDVAT 96
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 26/192 (13%)
Query: 620 QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRD 679
Q T + DG+ + + D T E Y + V ++ GSRD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 680 NYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDW-SEDSMYIRSNSGDYELLYWNAGTCRQ 738
I V+ + G+C ++ + H DW S+ + + D + +AG +
Sbjct: 129 KTIKVWTIK---------GQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 739 IPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDFGKLKLY 798
+ W N + IG +++N+ S D +IA+ G++ L+
Sbjct: 178 VK--------AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 799 SYPAVQPKLCLS 810
+ A + LS
Sbjct: 224 NLAAKKAMYTLS 235
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 19/248 (7%)
Query: 454 CLAFTQGGEVLSGDSNGNIIVWTRGS-NTISKFIRNVHEGSVFSICVLKEGSIISAGGKD 512
C G LS + + +W + T +F+ H+ V S+ + K+ S+I +G +D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVG--HKSDVMSVDIDKKASMIISGSRD 128
Query: 513 GRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQ--LIVGTTRNCILVGSLNLGFSPV 570
+ + Q + + +R V + + + + N +V + NL +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 571 ---VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPD 627
+GH + L A P + +AG D + LW+ + +++ ++ S FSP+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 628 GSIIIVGCIAG--------RWLVMDSETREAYSIHTDGNEPIQV-VKFSPDGKLLALGSR 678
+ G ++LV D R ++ ++ EP V + +S DG+ L G
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 679 DNYIYVYE 686
DN I V++
Sbjct: 307 DNVIRVWQ 314
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLY 730
LL SRD + ++++GD +K+ R GHS + + D Y S S D L
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 731 WNAGT 735
W+ T
Sbjct: 92 WDVAT 96
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 26/192 (13%)
Query: 620 QSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRD 679
Q T + DG+ + + D T E Y + V ++ GSRD
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 680 NYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDW-SEDSMYIRSNSGDYELLYWNAGTCRQ 738
I V+ + G+C ++ + H DW S+ + + D + +AG +
Sbjct: 129 KTIKVWTIK---------GQCL--ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 739 IPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDFGKLKLY 798
+ W N + IG +++N+ S D +IA+ G++ L+
Sbjct: 178 VK--------AWNLNQFQIEADFIG------HNSNINTLTASPDGTLIASAGKDGEIMLW 223
Query: 799 SYPAVQPKLCLS 810
+ A + LS
Sbjct: 224 NLAAKKAMYTLS 235
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 15/278 (5%)
Query: 463 VLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDG--RLLQFDS 520
+LS +G +I+W + I + V + G+ ++ GG D + +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 521 NLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGT-TRNCILVGSLNLGFSPVVLGHTDELW 579
++A H G + +Q++ + C L + GHT ++
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 580 ALAAHPSLSQFLTAGFDRIVQLWD---SMSHSVVWSKDIAEQAQSATFSPDGSIIIVGCI 636
+L+ P F++ D +LWD M + + F P+G+ G
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSD 246
Query: 637 AGRWLVMDSETREAYSIHTDGN--EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKY 694
+ D + ++ N I V FS G+LL G D V+ D+ K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW----DALKA 302
Query: 695 SRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
R G GH + ++ L ++D M + + S D L WN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 280 AVAVLYNVEEQTQRH-YLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVS 338
A A L++V E R + GH DI + PN ATG DA +R +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRADQELM 262
Query: 339 LFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRG 390
++ I G I+ +SFSK+ G L D D+N +VWD K+DR
Sbjct: 263 TYSHDNIICG-----ITSVSFSKS-GRLLLAGYD---DFNCNVWDALKADRA 305
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 15/278 (5%)
Query: 463 VLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDG--RLLQFDS 520
+LS +G +I+W + I + V + G+ ++ GG D + +
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
Query: 521 NLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGT-TRNCILVGSLNLGFSPVVLGHTDELW 579
++A H G + +Q++ + C L + GHT ++
Sbjct: 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188
Query: 580 ALAAHPSLSQFLTAGFDRIVQLWD---SMSHSVVWSKDIAEQAQSATFSPDGSIIIVGCI 636
+L+ P F++ D +LWD M + + F P+G+ G
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNAFATGSD 246
Query: 637 AGRWLVMDSETREAYSIHTDGN--EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKY 694
+ D + ++ N I V FS G+LL G D V+ D+ K
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW----DALKA 302
Query: 695 SRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
R G GH + ++ L ++D M + + S D L WN
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 280 AVAVLYNVEEQTQRH-YLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVS 338
A A L++V E R + GH DI + PN ATG DA +R +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRADQELM 262
Query: 339 LFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRG 390
++ I G I+ +SFSK+ G L D D+N +VWD K+DR
Sbjct: 263 TYSHDNIICG-----ITSVSFSKS-GRLLLAGYD---DFNCNVWDALKADRA 305
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 11/164 (6%)
Query: 574 HTDELWALAAHPSLSQFLTAGFDRIVQLWD---SMSHSVVWSKDIAEQAQSATFSPDGSI 630
HT ++ +L+ P F++ D +LWD M + + F P+G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNA 240
Query: 631 IIVGCIAGRWLVMDSETREAYSIHTDGN--EPIQVVKFSPDGKLLALGSRDNYIYVYEVS 688
G + D + ++ N I V FS G+LL G D V+
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW--- 297
Query: 689 GDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
D+ K R G GH + ++ L ++D M + + S D L WN
Sbjct: 298 -DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 280 AVAVLYNVEEQTQRH-YLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVS 338
A A L++V E R + GH DI + PN ATG DA +R +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRADQELM 262
Query: 339 LFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRG 390
++ I G I+ +SFSK+ G L D D+N +VWD K+DR
Sbjct: 263 TYSHDNIICG-----ITSVSFSKS-GRLLLAGYD---DFNCNVWDALKADRA 305
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 11/164 (6%)
Query: 574 HTDELWALAAHPSLSQFLTAGFDRIVQLWD---SMSHSVVWSKDIAEQAQSATFSPDGSI 630
HT ++ +L+ P F++ D +LWD M + + F P+G+
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNA 251
Query: 631 IIVGCIAGRWLVMDSETREAYSIHTDGN--EPIQVVKFSPDGKLLALGSRDNYIYVYEVS 688
G + D + ++ N I V FS G+LL G D V+
Sbjct: 252 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW--- 308
Query: 689 GDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
D+ K R G GH + ++ L ++D M + + S D L WN
Sbjct: 309 -DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 280 AVAVLYNVEEQTQRH-YLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVS 338
A A L++V E R + GH DI + PN ATG DA +R +
Sbjct: 217 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRADQELM 273
Query: 339 LFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRG 390
++ I G I+ +SFSK+ G L D D+N +VWD K+DR
Sbjct: 274 TYSHDNIICG-----ITSVSFSKS-GRLLLAGYD---DFNCNVWDALKADRA 316
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 23/265 (8%)
Query: 445 IRDKPKYVTCLAFTQGGE-VLSGDSNGNIIVW--TRGSNTISKFIRNVHEGSVFSICVLK 501
+R +V+ + + G+ LSG +G + +W T G+ T +F+ H V S+
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVG--HTKDVLSVAFSS 115
Query: 502 EGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTV--SEGRGSQLIVGTTRNCIL 559
+ I +G +D + ++ + L Y Q H + V S + +IV + L
Sbjct: 116 DNRQIVSGSRD-KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD-KL 173
Query: 560 VGSLNLGFSPVV---LGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIA 616
V NL + +GHT L + P S + G D LWD +++ D
Sbjct: 174 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 617 EQAQSATFSPD--------GSIIIVGCIAGRWLVMDSETREAYSIHTDGNEP-IQVVKFS 667
+ + FSP+ G I + + G+ +++D +E S + P + +S
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWS 292
Query: 668 PDGKLLALGSRDNYIYVYEVSGDSR 692
DG+ L G DN + V++V+ +R
Sbjct: 293 ADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 668 PDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCT-GHSSFITHLDWSEDSMYIRSNSGDY 726
PD L A SRD I +++++ D Y R GHS F++ + S D + S S D
Sbjct: 28 PDMILSA--SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 85
Query: 727 ELLYWNAGT 735
L W+ T
Sbjct: 86 TLRLWDLTT 94
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 11/164 (6%)
Query: 574 HTDELWALAAHPSLSQFLTAGFDRIVQLWD---SMSHSVVWSKDIAEQAQSATFSPDGSI 630
HT ++ +L+ P F++ D +LWD M + + F P+G+
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE--SDINAICFFPNGNA 240
Query: 631 IIVGCIAGRWLVMDSETREAYSIHTDGN--EPIQVVKFSPDGKLLALGSRDNYIYVYEVS 688
G + D + ++ N I V FS G+LL G D V+
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW--- 297
Query: 689 GDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
D+ K R G GH + ++ L ++D M + + S D L WN
Sbjct: 298 -DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 280 AVAVLYNVEEQTQRH-YLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVS 338
A A L++V E R + GH DI + PN ATG DA +R +
Sbjct: 206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS---DDATCRLFDLRADQELM 262
Query: 339 LFTVSIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRG 390
++ I G I+ +SFSK+ G L D D+N +VWD K+DR
Sbjct: 263 TYSHDNIICG-----ITSVSFSKS-GRLLLAGYD---DFNCNVWDALKADRA 305
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 112/265 (42%), Gaps = 23/265 (8%)
Query: 445 IRDKPKYVTCLAFTQGGE-VLSGDSNGNIIVW--TRGSNTISKFIRNVHEGSVFSICVLK 501
+R +V+ + + G+ LSG +G + +W T G+ T +F+ H V S+
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVG--HTKDVLSVAFSS 138
Query: 502 EGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTV--SEGRGSQLIVGTTRNCIL 559
+ I +G +D + ++ + L Y Q H + V S + +IV + L
Sbjct: 139 DNRQIVSGSRD-KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD-KL 196
Query: 560 VGSLNLGFSPVV---LGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIA 616
V NL + +GHT L + P S + G D LWD +++ D
Sbjct: 197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 617 EQAQSATFSPD--------GSIIIVGCIAGRWLVMDSETREAYSIHTDGNEP-IQVVKFS 667
+ + FSP+ G I + + G+ +++D +E S + P + +S
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWS 315
Query: 668 PDGKLLALGSRDNYIYVYEVSGDSR 692
DG+ L G DN + V++V+ +R
Sbjct: 316 ADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 668 PDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCT-GHSSFITHLDWSEDSMYIRSNSGDY 726
PD L A SRD I +++++ D Y R GHS F++ + S D + S S D
Sbjct: 51 PDMILSA--SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 727 ELLYWNAGT 735
L W+ T
Sbjct: 109 TLRLWDLTT 117
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 11/163 (6%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIII 632
GHTD + ++ T G D V+ WD + D Q S + P G +
Sbjct: 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240
Query: 633 VGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSR 692
VG + V+ + Y +H + +KF+ GK +DN + + +
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299
Query: 693 KYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGD-----YELLY 730
+ + SS + D S D YI + SGD YE++Y
Sbjct: 300 IFQ-----SKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 86/250 (34%), Gaps = 59/250 (23%)
Query: 585 PSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSA---TFSPDGSIIIVGCIAGR-- 639
P + G + +WD + + ++ A + SPD + C G
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 640 -WLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVG 698
W + + + HTDG I + S DG L G DN + +++ R G
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDI---SNDGTKLWTGGLDNTVRSWDL--------REG 215
Query: 699 RCTGHSSFITHL---------DWSEDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLRDVV 749
R F + + +W + + S + E+L+ N P QL +
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEW----LAVGMESSNVEVLHVNK------PDKYQLH--L 263
Query: 750 WESNSCTLTFTTIGIW---------------PEGA------DGTDVNSCERSHDARVIAT 788
ES +L F G W P GA + + V SC+ S D + I T
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323
Query: 789 GDDFGKLKLY 798
G K +Y
Sbjct: 324 GSGDKKATVY 333
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 54/243 (22%)
Query: 466 GDSNGNIIVWT--RGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQ 523
GD+ + W + +S+ + H +V+ C ++G I++ G D L F
Sbjct: 595 GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF----- 649
Query: 524 PTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVLGHTDELWALAA 583
+A+ E L I+ H DE+ A
Sbjct: 650 ----KAETGEKLLDIK---------------------------------AHEDEVLCCAF 672
Query: 584 HPSLSQFLTAGFDRIVQLWDSMSHSVVWSKD-IAEQAQSATFSPDGSIIIVGC-----IA 637
S T D+ V++WDS + +V + D +EQ F+ + +++
Sbjct: 673 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 638 GRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEV-SGDSRKYSR 696
W + E R HT+ + +FSPD +LLA S D + +++V S + RK
Sbjct: 733 KLWDLNQKECRNTMFGHTNS---VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 789
Query: 697 VGR 699
V R
Sbjct: 790 VKR 792
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 101/265 (38%), Gaps = 46/265 (17%)
Query: 571 VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS--------------KDIA 616
+ GHT+ + P + D ++LWD S + S +D+
Sbjct: 746 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 805
Query: 617 EQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYS-IHTDGNEPIQVVKFSPDGKLLAL 675
+ ++S DG IIV + L+ D T + IHT + IQ FSP L +
Sbjct: 806 VIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 864
Query: 676 GSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGT 735
+ ++ + DSR +V C GH S++ + +S D + S D + W
Sbjct: 865 ALSQYCVELWNI--DSRL--KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-- 918
Query: 736 CRQIPQSS-----QLRDVVWESNSCTLTFT--------------TIGIWPEGADGTDVNS 776
+++ ++S Q DVV++ N + I PE V+
Sbjct: 919 -KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA----QVSC 973
Query: 777 CERSHDARVIATGDDFGKLKLYSYP 801
C S +A GD+ G +K+ P
Sbjct: 974 CCLSPHLEYVAFGDEDGAIKIIELP 998
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 7/167 (4%)
Query: 570 VVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMS-HSVVWSKDIAEQAQSATFSPDG 628
VV HTD ++ + + G D+ +Q++ + + ++ K ++ FS D
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 629 SIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGK--LLALGSRDNYIYVYE 686
S I + + DS T + + + +E + F+ LLA GS D ++ +++
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 687 VSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNA 733
++ + + G H++ + H +S D + S S D L W+
Sbjct: 737 LNQKECRNTMFG----HTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Score = 35.8 bits (81), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIII 632
GH + + P S FLTA D+ +++W++ S + +Q F + ++++
Sbjct: 887 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-KKVCKNSAIVLKQEIDVVFQENETMVL 945
Query: 633 -VGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDS 691
V I G L+ + Y + SP + +A G D I + E+ +
Sbjct: 946 AVDNIRGLQLIAGKTGQIDYL----PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 1001
Query: 692 RKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGT 735
S V GH + H+ ++ D + S+S D + WN T
Sbjct: 1002 VFSSGV----GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1041
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 123/603 (20%), Positives = 213/603 (35%), Gaps = 140/603 (23%)
Query: 263 RSNLYLLPTGEIVYFVAAVAVLYNVEEQTQRHYL-GHTDDIKCLSIHPNKLLIATGQVAG 321
+SN LL TG +F+ L+++ ++ R+ + GHT+ + P+ L+A+ G
Sbjct: 717 KSNHLLLATGSNDFFLK----LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 772
Query: 322 HDAREGKPHIRIWNSVSLFTVSIIGIGEF-----------ERSISCLSFSKADGGTFLCA 370
+R+W+ S I + F E + C S+S ADG + A
Sbjct: 773 T--------LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-ADGDKIIVA 823
Query: 371 VDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDRNNIVTCGKSHINFWTID 430
+ ++D S +I S T+ +F P D ++ + + W ID
Sbjct: 824 AKN----KVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSPYDHLAVIALSQYCVELWNID 877
Query: 431 AGGTLYKKQGIFEMIRDKPKYVTCLAFT-QGGEVLSGDSNGNIIVWTRGSNTISKFIRNV 489
+ + +G +V + F+ G L+ + I VW + I
Sbjct: 878 SRLKVADCRGHL-------SWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 930
Query: 490 HEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQL 549
E V V +E + + R LQ IA G I + E + S
Sbjct: 931 QEIDV----VFQENETMVLAVDNIRGLQL------------IAGKTGQIDYLPEAQVSCC 974
Query: 550 IVGTTRNCILVGSLNLGFSPVVL----------GHTDELWALAAHPSLSQFLTAGFDRIV 599
+ + G + + L GH + + +++ D ++
Sbjct: 975 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1034
Query: 600 QLWDSMSHSVVW-------SKD--IAEQAQSATFSPDGSIIIVGCIAGRW---LVMDSET 647
Q+W+ + V+ KD + + ++ ++S DG++ + I GR T
Sbjct: 1035 QVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1094
Query: 648 REAYSIHTDGNE-------------------PIQVVK----------FSPDGKLLALGSR 678
+ +I +D + P+ +K FS DG LLA G
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1154
Query: 679 DNYIYVYEVSGDSRKYS------RVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
+ I ++ VS +S G T H ++T + +S DS + S G L +WN
Sbjct: 1155 NGEIRIWNVSDGQLLHSCAPISVEEGTAT-HGGWVTDVCFSPDSKTLVSAGG--YLKWWN 1211
Query: 733 AGTCRQIPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDF 792
T SSQ TF T +GT++ S D R T D+
Sbjct: 1212 VAT----GDSSQ-------------TFYT--------NGTNLKKIHVSPDFRTYVTVDNL 1246
Query: 793 GKL 795
G L
Sbjct: 1247 GIL 1249
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 101/249 (40%), Gaps = 19/249 (7%)
Query: 454 CLAFTQGGEVLSGDSNGNIIVWTRGS-NTISKFIRNVHEGSVFSICVLKEGSIISAGGKD 512
C G LS + + +W + T +F+ H+ V S+ + K+ S I +G +D
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVG--HKSDVXSVDIDKKASXIISGSRD 128
Query: 513 GRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQ--LIVGTTRNCILVGSLNLGFSPV 570
+ + Q + + +R V + + + + N V + NL +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 571 ---VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPD 627
+GH + L A P + +AG D + LW+ + ++ ++ S FSP+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
Query: 628 GSIIIVGCIAG--------RWLVMDSETREAYSIHTDGNEPIQV-VKFSPDGKLLALGSR 678
+ G ++LV D R ++ ++ EP V + +S DG+ L G
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDD--LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 679 DNYIYVYEV 687
DN I V++V
Sbjct: 307 DNVIRVWQV 315
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLY 730
LL SRD + ++++GD +K+ R GHS + + D Y S S D L
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 731 WNAGT 735
W+ T
Sbjct: 92 WDVAT 96
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 91/243 (37%), Gaps = 54/243 (22%)
Query: 466 GDSNGNIIVWT--RGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQ 523
GD+ + W + +S+ + H +V+ C ++G I++ G D L F
Sbjct: 588 GDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF----- 642
Query: 524 PTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVLGHTDELWALAA 583
+A+ E L I+ H DE+ A
Sbjct: 643 ----KAETGEKLLDIK---------------------------------AHEDEVLCCAF 665
Query: 584 HPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDI-AEQAQSATFSPDGSIIIVGC-----IA 637
S T D+ V++WDS + +V + D +EQ F+ + +++
Sbjct: 666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 638 GRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEV-SGDSRKYSR 696
W + E R HT+ + +FSPD +LLA S D + +++V S + RK
Sbjct: 726 KLWDLNQKECRNTMFGHTNS---VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782
Query: 697 VGR 699
V R
Sbjct: 783 VKR 785
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 101/265 (38%), Gaps = 46/265 (17%)
Query: 571 VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS--------------KDIA 616
+ GHT+ + P + D ++LWD S + S +D+
Sbjct: 739 MFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798
Query: 617 EQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYS-IHTDGNEPIQVVKFSPDGKLLAL 675
+ ++S DG IIV + L+ D T + IHT + IQ FSP L +
Sbjct: 799 VIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVI 857
Query: 676 GSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGT 735
+ ++ + DSR +V C GH S++ + +S D + S D + W
Sbjct: 858 ALSQYCVELWNI--DSR--LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-- 911
Query: 736 CRQIPQSS-----QLRDVVWESNSCTLTFT--------------TIGIWPEGADGTDVNS 776
+++ ++S Q DVV++ N + I PE V+
Sbjct: 912 -KKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEA----QVSC 966
Query: 777 CERSHDARVIATGDDFGKLKLYSYP 801
C S +A GD+ G +K+ P
Sbjct: 967 CCLSPHLEYVAFGDEDGAIKIIELP 991
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 7/167 (4%)
Query: 570 VVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMS-HSVVWSKDIAEQAQSATFSPDG 628
VV HTD ++ + + G D+ +Q++ + + ++ K ++ FS D
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 629 SIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGK--LLALGSRDNYIYVYE 686
S I + + DS T + + + +E + F+ LLA GS D ++ +++
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 687 VSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNA 733
++ + + G H++ + H +S D + S S D L W+
Sbjct: 730 LNQKECRNTMFG----HTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 10/164 (6%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIII 632
GH + + P S FLTA D+ +++W++ S + +Q F + ++++
Sbjct: 880 GHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-KKVCKNSAIVLKQEIDVVFQENETMVL 938
Query: 633 -VGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDS 691
V I G L+ + Y + SP + +A G D I + E+ +
Sbjct: 939 AVDNIRGLQLIAGKTGQIDYL----PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994
Query: 692 RKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGT 735
S V GH + H+ ++ D + S+S D + WN T
Sbjct: 995 VFSSGV----GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 123/603 (20%), Positives = 213/603 (35%), Gaps = 140/603 (23%)
Query: 263 RSNLYLLPTGEIVYFVAAVAVLYNVEEQTQRHYL-GHTDDIKCLSIHPNKLLIATGQVAG 321
+SN LL TG +F+ L+++ ++ R+ + GHT+ + P+ L+A+ G
Sbjct: 710 KSNHLLLATGSNDFFLK----LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765
Query: 322 HDAREGKPHIRIWNSVSLFTVSIIGIGEF-----------ERSISCLSFSKADGGTFLCA 370
+R+W+ S I + F E + C S+S ADG + A
Sbjct: 766 T--------LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS-ADGDKIIVA 816
Query: 371 VDEGNDYNISVWDWQKSDRGHKITETKCSVDTVVAAEFHPLDRNNIVTCGKSHINFWTID 430
+ ++D S +I S T+ +F P D ++ + + W ID
Sbjct: 817 AKN----KVLLFDIHTSGLLAEIHTGHHS--TIQYCDFSPYDHLAVIALSQYCVELWNID 870
Query: 431 AGGTLYKKQGIFEMIRDKPKYVTCLAFT-QGGEVLSGDSNGNIIVWTRGSNTISKFIRNV 489
+ + +G +V + F+ G L+ + I VW + I
Sbjct: 871 SRLKVADCRGHLS-------WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923
Query: 490 HEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQL 549
E V V +E + + R LQ IA G I + E + S
Sbjct: 924 QEIDV----VFQENETMVLAVDNIRGLQL------------IAGKTGQIDYLPEAQVSCC 967
Query: 550 IVGTTRNCILVGSLNLGFSPVVL----------GHTDELWALAAHPSLSQFLTAGFDRIV 599
+ + G + + L GH + + +++ D ++
Sbjct: 968 CLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVI 1027
Query: 600 QLWDSMSHSVVW-------SKD--IAEQAQSATFSPDGSIIIVGCIAGRW---LVMDSET 647
Q+W+ + V+ KD + + ++ ++S DG++ + I GR T
Sbjct: 1028 QVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087
Query: 648 REAYSIHTDGNE-------------------PIQVVK----------FSPDGKLLALGSR 678
+ +I +D + P+ +K FS DG LLA G
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1147
Query: 679 DNYIYVYEVSGDSRKYS------RVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
+ I ++ VS +S G T H ++T + +S DS + S G L +WN
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTAT-HGGWVTDVCFSPDSKTLVSAGG--YLKWWN 1204
Query: 733 AGTCRQIPQSSQLRDVVWESNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIATGDDF 792
T SSQ TF T +GT++ S D R T D+
Sbjct: 1205 VAT----GDSSQ-------------TFYT--------NGTNLKKIHVSPDFRTYVTVDNL 1239
Query: 793 GKL 795
G L
Sbjct: 1240 GIL 1242
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 7/172 (4%)
Query: 570 VVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMS-HSVVWSKDIAEQAQSATFSPDG 628
VV HTD ++ + + G D+ +Q++ + + ++ K ++ FS D
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDD 675
Query: 629 SIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKF--SPDGKLLALGSRDNYIYVYE 686
I + + + +S T E + + +E + F S LLA GS D ++ +++
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 687 VSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQ 738
++ + + G H++ + H +S D + S S D L W+A + +
Sbjct: 736 LNQKECRNTMFG----HTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANE 783
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 22/200 (11%)
Query: 571 VLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS--------------KDIA 616
+ GHT+ + P + D ++LWD+ S + S +D+
Sbjct: 745 MFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDME 804
Query: 617 EQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAY-SIHTDGNEPIQVVKFSPDGKLLAL 675
+ ++S DG+ I+V + + D T IHT + IQ FSP L +
Sbjct: 805 VIVKCCSWSADGARIMVAA-KNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVV 863
Query: 676 GSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNA-G 734
+ ++ + DSR S+V C GH S++ + +S D ++S D + W
Sbjct: 864 ALSQYCVELW--NTDSR--SKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Query: 735 TCRQ-IPQSSQLRDVVWESN 753
C+ Q DVV++ N
Sbjct: 920 VCKNSAVMLKQEVDVVFQEN 939
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 35/254 (13%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDS---MSHSVVWSK---DIAEQAQSATFSP 626
GH + + P S FLT+ D+ ++LW++ +S V K D+ Q
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLA 945
Query: 627 DGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYE 686
I + I GR +D T S SP + +A G + I + E
Sbjct: 946 VDHIRRLQLINGRTGQIDYLTEAQVS----------CCCLSPHLQYIAFGDENGAIEILE 995
Query: 687 VSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQI---PQSS 743
+ + SR H + H+ ++ D + S+S D E+ WN + I
Sbjct: 996 LVNNRIFQSRFQ----HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQE 1051
Query: 744 QLRDVVWESNSCTLTFT---TIGIWP--EGADGTD-------VNSCERSHDARVIATGDD 791
++D NS L+++ T+ +W G D V SC+ SHDA ++
Sbjct: 1052 TVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSA 1111
Query: 792 FGKLKLYSYPAVQP 805
K++S+ + P
Sbjct: 1112 DKTAKIWSFDLLLP 1125
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 7/145 (4%)
Query: 591 LTAGFDRIVQLW--DSMSHSVVWSKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETR 648
+ +R V +W DS S S + D + S +S DGS + VG G + D E++
Sbjct: 107 VAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166
Query: 649 EAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFIT 708
+ T +V S + +L+ GSR I+ ++V + + +G GHSS +
Sbjct: 167 T--KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQ---IGTLQGHSSEVC 221
Query: 709 HLDWSEDSMYIRSNSGDYELLYWNA 733
L W D + + S D + W+A
Sbjct: 222 GLAWRSDGLQLASGGNDNVVQIWDA 246
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Query: 471 NIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQP-----T 525
N+ VW S ++S V S+ +GS +S G +G + +D Q
Sbjct: 114 NVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA 173
Query: 526 GYEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGFSPVVLGHTDELWALAAHP 585
G++A++ +S G S I + + + + +G + GH+ E+ LA
Sbjct: 174 GHQARVGCLSWNRHVLSSGSRSGAI---HHHDVRIANHQIG---TLQGHSSEVCGLAWRS 227
Query: 586 SLSQFLTAGFDRIVQLWDSMS 606
Q + G D +VQ+WD+ S
Sbjct: 228 DGLQLASGGNDNVVQIWDARS 248
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 661 IQVVKFSPDGKLLALGSRDNYIYVYE-VSGDSRKYSRVG-------RCTGHSSFITHLDW 712
+ V+++PDG L A D I +Y V G ++ G + HS + L W
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDG-----TKTGVFEDDSLKNVAHSGSVFGLTW 247
Query: 713 SEDSMYIRSNSGDYELLYWNAGTC---RQIPQSSQLRD----VVW 750
S D I S S D + WN T + IP +++ D ++W
Sbjct: 248 SPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 21/196 (10%)
Query: 284 LYNVEE-QTQRHYLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTV 342
L+N++ Q Q +LGHT D+ ++ P+ I +G G D +R+WN V +
Sbjct: 93 LWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSG---GRDNA-----LRVWN-VKGECM 143
Query: 343 SIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDT 402
+ G +SC+ FS + + V G D + VWD G +T+ K +
Sbjct: 144 HTLSRGAHTDWVSCVRFSPSLDAPVI--VSGGWDNLVKVWDLAT---GRLVTDLKGHTNY 198
Query: 403 VVAAEFHPLDRNNIVTCGKSHI-NFWTIDAGGTLYKKQG---IFEMIRDKPKYVTCLAFT 458
V + P D + + K + W + G L + I ++ +Y C A
Sbjct: 199 VTSVTVSP-DGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATE 257
Query: 459 QGGEVLSGDSNGNIIV 474
+G + + N +IIV
Sbjct: 258 KGIRIFDLE-NKDIIV 272
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 20/108 (18%)
Query: 640 WLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGR 699
W + + + + + HT + + V FSPD + + G RDN + V+ V G+
Sbjct: 94 WNLQNGQCQYKFLGHT---KDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE--------- 141
Query: 700 CTGHSSFITHLDW--------SEDSMYIRSNSGDYELLYWNAGTCRQI 739
C S H DW S D+ I S D + W+ T R +
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLV 189
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 10/124 (8%)
Query: 572 LGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQS-----ATFSP 626
LGHT ++ ++A P Q ++ G D +++W+ + ++ A + FSP
Sbjct: 106 LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECM---HTLSRGAHTDWVSCVRFSP 162
Query: 627 --DGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYV 684
D +I+ G V D T + + V SPDG L A +D +
Sbjct: 163 SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARL 222
Query: 685 YEVS 688
++++
Sbjct: 223 WDLT 226
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 362 ADGGTFLCAVDEGNDYNISVWDWQKSDRGHK-ITETKCSVDTVVAAEFHPLDRNNIVTCG 420
++ G F AV D+++ +W+ Q +K + TK V++ F P D IV+ G
Sbjct: 76 SNNGNF--AVSASWDHSLRLWNLQNGQCQYKFLGHTK----DVLSVAFSP-DNRQIVSGG 128
Query: 421 KSH-INFWTIDAGGTLYKKQGIFEMIRDK-PKYVTCLAFTQGGE---VLSGDSNGNIIVW 475
+ + + W + K + + + R +V+C+ F+ + ++SG + + VW
Sbjct: 129 RDNALRVWNV-------KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 476 TRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFD 519
+ + ++ H V S+ V +GS+ ++ KDG +D
Sbjct: 182 DLATGRLVTDLKG-HTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 15/183 (8%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS-KDIAEQAQSATFSPDGSII 631
GH + + HP S ++A D +++WD + + K + Q +F G +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-L 164
Query: 632 IVGCIAGRWLVM-DSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGD 690
+ C A + + D + E + + V P+G + SRD I ++EV
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--- 221
Query: 691 SRKYSRVGRC----TGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQIPQSSQLR 746
+ G C TGH ++ + ++D I S S D + W T + + R
Sbjct: 222 -----QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR 276
Query: 747 DVV 749
VV
Sbjct: 277 HVV 279
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 5/153 (3%)
Query: 567 FSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQ-AQSATFS 625
F + GHTD + ++ S + D ++LWD + + + S +
Sbjct: 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIM 201
Query: 626 PDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVY 685
P+G I+ + + +T T E +++V+ + DG L+A S D + V+
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Query: 686 EVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
V+ K H + + W+ +S Y
Sbjct: 262 VVATKECK----AELREHRHVVECISWAPESSY 290
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 66/183 (36%), Gaps = 27/183 (14%)
Query: 624 FSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIY 683
F P S+++ V D ET + + +Q + F GKLLA S D I
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 684 VYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQIPQSS 743
+++ G + + GH ++ + + +I S S D + W T
Sbjct: 176 LWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-------- 223
Query: 744 QLRDVVWESNSCTLTFTTIGIWPE----GADGTDVNSCERSHDAR--VIATGDDFGKLKL 797
C TFT W DGT + SC R V+AT + +L+
Sbjct: 224 ---------GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 798 YSY 800
+ +
Sbjct: 275 HRH 277
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 87/237 (36%), Gaps = 35/237 (14%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIII 632
GHT +W++ +T D ++LWD + V + + FSP G+ +
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL 131
Query: 633 V---------GCIAGRWLVMDSETREAYSIHTDGNEPIQ------------VVKFSPDGK 671
G I + DS T E + EPI V +S GK
Sbjct: 132 AILDNVMKNPGSINIYEIERDSATHELTKV---SEEPIHKIITHEGLDAATVAGWSTKGK 188
Query: 672 LLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYW 731
+ G +D I Y+VS + Y V H I+ + +S D Y ++S D
Sbjct: 189 YIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV 245
Query: 732 NAGTCRQIPQSSQLRDVVWESNSCTLT----FTTIGIWPEGADGTDVNSCERSHDAR 784
+ T + + + + N+ +T F +G E D T ++ E +AR
Sbjct: 246 DVSTLQVLKK----YETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 652 SIHTDGNE-PIQVVKFSPDGKLLALGSRDNYIYV-YEVSGDSRKYSRVGRCTGHSSFITH 709
+I G+E P+ VK++ +G LL S+D+ V Y ++G+ R+G GH+ I
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE-----RLGTLDGHTGTIWS 79
Query: 710 LDWSEDSMYIRSNSGDYELLYWNA--GTC 736
+D + Y + S DY + W+ G C
Sbjct: 80 IDVDCFTKYCVTGSADYSIKLWDVSNGQC 108
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 75/175 (42%), Gaps = 24/175 (13%)
Query: 452 VTCLAFTQGGEVLSGDSNGNIIVWT----------RGSNTISKFIRNVHEGSVFSIC--- 498
V L + GG ++SG ++ + VW G N+ + + V ++ I
Sbjct: 165 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 499 ---------VLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQL 549
+ KE S+ G + L F + + + + H+ +RTVS G G+ +
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS-GHGNIV 283
Query: 550 IVGTTRNCILVGSL-NLGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWD 603
+ G+ N ++V + + ++ GHTD +++ + ++A D +++WD
Sbjct: 284 VSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWD 338
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 38/271 (14%)
Query: 490 HEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQL 549
H SV + C+ E + + G D + +DS + Q++ H GG+ + G L
Sbjct: 120 HMTSVIT-CLQFEDNYVITGADDKMIRVYDS--INKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 550 IVGTTRNCILVGSLNLG-FSPVVLGHTDELWAL--AAHPSLSQFLTAGFDRIVQLWDSMS 606
+ G+T + V + G + V GH + L + ++ +T D + +W
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 607 HSVVWSKDIAEQ------------------------AQSATFSPDGSIIIVGCIAGRWLV 642
S V D E+ A T S G+I++ G +V
Sbjct: 237 ESSV--PDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 643 MDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTG 702
D + I + + I + + K S D I ++++ Y+ G
Sbjct: 295 WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT----LQG 350
Query: 703 HSSFITHLDWSEDSMYIRSNSGDYELLYWNA 733
H++ + L S+ ++ S + D + W+A
Sbjct: 351 HTALVGLLRLSDK--FLVSAAADGSIRGWDA 379
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 573 GHTDELWALAAHPSLSQ-FLTAGFDRIVQLWDSMSHSVVWS--KDI-AEQAQSATFSPDG 628
GHT + +A HP+ L+AG D ++ +WD + + V + D+ + S +S DG
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 629 SIIIVGCIAGRWLVMDSETREAYSIHT-----DGNEPIQVVKFSPDGKLLALG 676
++I C R V+ E R+ + +G P+ V F +GK+L G
Sbjct: 189 ALICTSCRDKRVRVI--EPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG 238
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 573 GHTDELWALAAHPSLSQ-FLTAGFDRIVQLWDSMSHSVVWS--KDI-AEQAQSATFSPDG 628
GHT + +A HP+ L+AG D ++ +WD + + V + D+ + S +S DG
Sbjct: 129 GHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG 188
Query: 629 SIIIVGCIAGRWLVMDSETREAYSIHT-----DGNEPIQVVKFSPDGKLLALG 676
++I C R V+ E R+ + +G P+ V F +GK+L G
Sbjct: 189 ALICTSCRDKRVRVI--EPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTG 238
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 669 DGKLLALGSRDNYIYVYEVSGDSRKYSRVGR-CTGHSSFITHLDWSEDSMYIRSNSGDYE 727
+ ++ SRD I +++++ D + Y R TGHS F+ + S D + S S D E
Sbjct: 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGE 453
Query: 728 LLYWN 732
L W+
Sbjct: 454 LRLWD 458
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 451 YVTCLAF---TQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIIS 507
+V+C+ F T ++S + + VW SN + H G V ++ V +GS+ +
Sbjct: 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNL-SNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 508 AGGKDGRLLQFD 519
+GGKDG +L +D
Sbjct: 578 SGGKDGVVLLWD 589
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
EPI ++ D +A+ ++ +++YE SG+ K+ +V H+ +T +DW+ DS
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGIDWAPDSNR 66
Query: 719 IRSNSGDYELLYW 731
I + D W
Sbjct: 67 IVTCGTDRNAYVW 79
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 20/132 (15%)
Query: 572 LGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSM-----------SHS-----VVWSKDI 615
+GH E++++A P Q L+AG +R ++LW+ + +HS V +S +
Sbjct: 115 VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIM 174
Query: 616 AEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLAL 675
+ F+P VG GR V ++ + Y+ + + + SP+GK +A
Sbjct: 175 KSANKVQPFAP--YFASVGW-DGRLKVWNTNFQIRYTFKAHESN-VNHLSISPNGKYIAT 230
Query: 676 GSRDNYIYVYEV 687
G +D + ++++
Sbjct: 231 GGKDKKLLIWDI 242
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 469 NGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFD 519
+G + VW +N ++ HE +V + + G I+ GGKD +LL +D
Sbjct: 193 DGRLKVWN--TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 665 KFSPDGKLLALGSRDNYIYVYEVSGDSRK-YSRVGR--CTGHSSFITHLDWSEDSMYIRS 721
K + D +L GSRD + ++++ + + Y + TGH+ F++ L S+++ + S
Sbjct: 34 KENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93
Query: 722 NSGDYELLYWNAGT 735
+S D L W+ T
Sbjct: 94 SSWDKTLRLWDLRT 107
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 54/160 (33%), Gaps = 34/160 (21%)
Query: 573 GHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIII 632
H + ++A P S FD V +W E++ TF D II
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIW------------AKEESADRTFEMDLLAII 103
Query: 633 VGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSR 692
G ++ V +S DG LA SRD ++++E
Sbjct: 104 EG----------------------HENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE 141
Query: 693 KYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWN 732
+Y + HS + H+ W + S+S D + W
Sbjct: 142 EYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 659 EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMY 718
EPI ++ D +A+ ++ +++YE SG+ K+ +V H+ +T +DW+ DS
Sbjct: 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGN--KWVQVHELKEHNGQVTGVDWAPDSNR 66
Query: 719 IRSNSGDYELLYW 731
I + D W
Sbjct: 67 IVTCGTDRNAYVW 79
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 87/215 (40%), Gaps = 46/215 (21%)
Query: 621 SATFSPDGSIIIVGCIAGR---WLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGS 677
S ++P+ + I+ GR W + S+ A +H + F+P+G+ +A G
Sbjct: 71 SLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC---PWVMECAFAPNGQSVACGG 127
Query: 678 RDNYIYVYEVSGDSRK-----YSRVGRCTGHSSFITHLDWSEDS-MYIRSNSGDYELLYW 731
D+ ++ +S + + SRV TGH + + + D + + SGD + W
Sbjct: 128 LDSACSIFNLSSQADRDGNMPVSRV--LTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 732 NAGTCRQIP------QSSQLRDV-----------VWESNSCTLTFTTIGIWP-------- 766
+ T ++I S DV ++ S SC TT+ +W
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCD---TTVRLWDLRITSRAV 242
Query: 767 ---EGADGTDVNSCERSHDARVIATGDDFGKLKLY 798
G +G D+NS + D + TG D G +L+
Sbjct: 243 RTYHGHEG-DINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 702 GHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQ 738
GHS + LDW+ + +I S S D L+ WNA T ++
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQK 100
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 452 VTCLAFTQGGEVL-SGDSNGNIIVW-TRGSNTISKF--IRNVHEGSVFSICVLKEGSIIS 507
VT +AF+ G +L +G SNG+ VW T + + ++N HEG + + + +GS +
Sbjct: 301 VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALC 360
Query: 508 AGGKDGRL 515
G D L
Sbjct: 361 TGSWDKNL 368
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 452 VTCLAFTQGGEVLSGDSNGNIIVWT----------RGSNTISKFIRNVHEGSVFSIC--- 498
V L + GG ++SG ++ + VW G N+ + + V ++ I
Sbjct: 165 VWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224
Query: 499 ---------VLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQL 549
+ KE S+ G + L F + + + + H +RTVS G G+ +
Sbjct: 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS-GHGNIV 283
Query: 550 IVGTTRNCILVGSLNLGFSPVVL-GHTDELWALAAHPSLSQFLTAGFDRIVQLWD 603
+ G+ N ++V + +L GHTD +++ + ++A D +++WD
Sbjct: 284 VSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWD 338
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 74/202 (36%), Gaps = 26/202 (12%)
Query: 490 HEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQL 549
H SV + C+ E + + G D + +DS + Q++ H GG+ + G L
Sbjct: 120 HXTSVIT-CLQFEDNYVITGADDKXIRVYDS--INKKFLLQLSGHDGGVWALKYAHGGIL 176
Query: 550 IVGTTRNCILVGSLNLG-FSPVVLGHTDELWAL--AAHPSLSQFLTAGFDRIVQLWDSMS 606
+ G+T + V + G + V GH + L + ++ +T D + +W
Sbjct: 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 236
Query: 607 HSVVWSKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKF 666
S V +P+ + VG + G V
Sbjct: 237 ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--------------------HXASVRTV 276
Query: 667 SPDGKLLALGSRDNYIYVYEVS 688
S G ++ GS DN + V++V+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVA 298
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 25/208 (12%)
Query: 544 GRGSQLIVGTTRNCILVGSLNLGFSPVVL-GHTDELWALAAHPSLSQFLTAGFDRIVQLW 602
R + +IVG+ I V + N G V H D + ++A HP+ L+ D V+LW
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 603 DSMSHSVVWSKDIA-EQ--------AQSATFSP-DGSIIIVGCIAGRWLVMD-SETREAY 651
+ W + A EQ F+P D S GC+ V ++ +
Sbjct: 125 N-------WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 652 SIHTDGNEPIQVVKFS--PDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITH 709
++ T + V + PD + S D I ++ D + S V GH S ++
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW----DYQTKSCVATLEGHMSNVSF 233
Query: 710 LDWSEDSMYIRSNSGDYELLYWNAGTCR 737
+ I S S D L WN+ T +
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 81/208 (38%), Gaps = 25/208 (12%)
Query: 544 GRGSQLIVGTTRNCILVGSLNLGFSPVVL-GHTDELWALAAHPSLSQFLTAGFDRIVQLW 602
R + +IVG+ I V + N G V H D + ++A HP+ L+ D V+LW
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 603 DSMSHSVVWSKDIA-EQ--------AQSATFSP-DGSIIIVGCIAGRWLVMD-SETREAY 651
+ W + A EQ F+P D S GC+ V ++ +
Sbjct: 125 N-------WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF 177
Query: 652 SIHTDGNEPIQVVKFS--PDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITH 709
++ T + V + PD + S D I ++ D + S V GH S ++
Sbjct: 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW----DYQTKSCVATLEGHMSNVSF 233
Query: 710 LDWSEDSMYIRSNSGDYELLYWNAGTCR 737
+ I S S D L WN+ T +
Sbjct: 234 AVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 19/160 (11%)
Query: 362 ADGGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCS-----VDTVVAAEFHPLDRNNI 416
+D T+L A +D I++W + +DR I + K + + + AAEFHP N
Sbjct: 187 SDYETYLSA----DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF 242
Query: 417 V-TCGKSHINFWTIDAGGTLYKKQGIFEMIRDKPKY---------VTCLAFTQGGEVLSG 466
V + K I + A + +FE D ++ + F+ G +
Sbjct: 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302
Query: 467 DSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSII 506
++ VW VHE +C L E I
Sbjct: 303 RDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 17/204 (8%)
Query: 544 GRGSQLIVGTTRNCILVGSLNLGFSPVVL-GHTDELWALAAHPSLSQFLTAGFDRIVQLW 602
R + +IVG+ I V + N G V H D + ++A HP+ L+ D V+LW
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 603 DSMSHSVVWSKDIAEQAQS-----ATFSP-DGSIIIVGCIAGRWLVMD-SETREAYSIHT 655
+ ++ W+ + + F+P D S GC+ V ++ +++ T
Sbjct: 125 NWENN---WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 656 DGNEPIQVVKFS--PDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWS 713
+ V + PD + S D I ++ D + S V GH S ++ +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW----DYQTKSCVATLEGHMSNVSFAVFH 237
Query: 714 EDSMYIRSNSGDYELLYWNAGTCR 737
I S S D L WN+ T +
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYK 261
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 28/246 (11%)
Query: 285 YNVEEQTQRHYLGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWNSVSLFTVSI 344
YN E+ + H D I+ +++HP K + +G +++WN + + +
Sbjct: 84 YNTGEKVV-DFEAHPDYIRSIAVHPTKPYVLSGS--------DDLTVKLWNWENNWALEQ 134
Query: 345 IGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNISVWDWQKSDRGHKITETKCSVDTVV 404
G E + C++F+ D TF D + VW +S +T + V
Sbjct: 135 TFEGH-EHFVMCVAFNPKDPSTFASGC---LDRTVKVWSLGQSTPNFTLTTGQER--GVN 188
Query: 405 AAEFHPL-DRNNIVTCGKS-HINFWTIDAGGTLYKKQGIFEMIRDKPKYVTCLAFTQGGE 462
+++PL D+ ++T I W Y+ + + V+ F
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWD-------YQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 463 -VLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEG--SIISAGGKDGRLLQFD 519
++SG +G + +W + + K + NV + I G + I++G +G +
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 520 SNLQPT 525
N +PT
Sbjct: 301 GNDEPT 306
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 82/204 (40%), Gaps = 17/204 (8%)
Query: 544 GRGSQLIVGTTRNCILVGSLNLGFSPVVL-GHTDELWALAAHPSLSQFLTAGFDRIVQLW 602
R + +IVG+ I V + N G V H D + ++A HP+ L+ D V+LW
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 603 DSMSHSVVWSKDIAEQAQS-----ATFSP-DGSIIIVGCIAGRWLVMD-SETREAYSIHT 655
+ ++ W+ + + F+P D S GC+ V ++ +++ T
Sbjct: 125 NWENN---WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 656 DGNEPIQVVKFS--PDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWS 713
+ V + PD + S D I ++ D + S V GH S ++ +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW----DYQTKSCVATLEGHMSNVSFAVFH 237
Query: 714 EDSMYIRSNSGDYELLYWNAGTCR 737
I S S D L WN+ T +
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 81/216 (37%), Gaps = 54/216 (25%)
Query: 450 KYVTCLAF--TQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIIS 507
+ T LA+ T V G G+I++W G FI+ + G GSI
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG----------GSITG 169
Query: 508 AGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGF 567
L+F+ P A + G + + +G+ L V + + I + +L
Sbjct: 170 --------LKFN----PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV 217
Query: 568 SP-------------VVLGHTD--ELWALAAH----------PSLSQFL-TAGFDRIVQL 601
S V+L + D ELW L H P FL TA D+ V++
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277
Query: 602 WDSMS----HSVVWSKDIAEQAQSATFSPDGSIIIV 633
WD S ++S +A FSPDG+ ++
Sbjct: 278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 81/216 (37%), Gaps = 54/216 (25%)
Query: 450 KYVTCLAF--TQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIIS 507
+ T LA+ T V G G+I++W G FI+ + G GSI
Sbjct: 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG----------GSITG 169
Query: 508 AGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGF 567
L+F+ P A + G + + +G+ L V + + I + +L
Sbjct: 170 --------LKFN----PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV 217
Query: 568 SP-------------VVLGHTD--ELWALAAH----------PSLSQFL-TAGFDRIVQL 601
S V+L + D ELW L H P FL TA D+ V++
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 277
Query: 602 WDSMS----HSVVWSKDIAEQAQSATFSPDGSIIIV 633
WD S ++S +A FSPDG+ ++
Sbjct: 278 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 313
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 81/216 (37%), Gaps = 54/216 (25%)
Query: 450 KYVTCLAF--TQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIIS 507
+ T LA+ T V G G+I++W G FI+ + G GSI
Sbjct: 121 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAG----------GSITG 170
Query: 508 AGGKDGRLLQFDSNLQPTGYEAQIAEHLGGIRTVSEGRGSQLIVGTTRNCILVGSLNLGF 567
L+F+ P A + G + + +G+ L V + + I + +L
Sbjct: 171 --------LKFN----PLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDV 218
Query: 568 SP-------------VVLGHTD--ELWALAAH----------PSLSQFL-TAGFDRIVQL 601
S V+L + D ELW L H P FL TA D+ V++
Sbjct: 219 SASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKI 278
Query: 602 WDSMS----HSVVWSKDIAEQAQSATFSPDGSIIIV 633
WD S ++S +A FSPDG+ ++
Sbjct: 279 WDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT 314
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 343 SIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNI-SVWDWQKSDRGHKITETKCSVD 401
S I E+ ++ F+ D T L D+ N+ + S +DW K D+ +
Sbjct: 241 SYIAEMPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL 299
Query: 402 TVVAAEFHPL---------DRNNIVTCGKSHINFWTIDAGGTLYKKQGIFEMIRDK--PK 450
T + A +HP+ + ++ K I+ + ++GG +++ +RD
Sbjct: 300 TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQ-------LRDPNAAG 352
Query: 451 YVTCLAFTQGGEVLSGDSNGNIIVWTR 477
++ F+ G+VL+ NI++W R
Sbjct: 353 IISLNKFSPTGDVLASGMGFNILIWNR 379
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 33.1 bits (74), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 20/147 (13%)
Query: 343 SIIGIGEFERSISCLSFSKADGGTFLCAVDEGNDYNI-SVWDWQKSDRGHKITETKCSVD 401
S I E+ ++ F+ D T L D+ N+ + S +DW K D+ +
Sbjct: 242 SYIAEMPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHL 300
Query: 402 TVVAAEFHPL---------DRNNIVTCGKSHINFWTIDAGGTLYKKQGIFEMIRDK--PK 450
T + A +HP+ + ++ K I+ + ++GG +++ +RD
Sbjct: 301 TPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQ-------LRDPNAAG 353
Query: 451 YVTCLAFTQGGEVLSGDSNGNIIVWTR 477
++ F+ G+VL+ NI++W R
Sbjct: 354 IISLNKFSPTGDVLASGMGFNILIWNR 380
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 599 VQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGN 658
VQLWD + + A+ + S + I+ G +G D E + G+
Sbjct: 182 VQLWDVQQQKRL-RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 240
Query: 659 -EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM 717
+ + ++++PDG+ LA G DN + V+ + + + T H + + W
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 718 YIRSNSG---DYELLYWN--AGTC-RQIPQSSQLRDVVW 750
+ + G D + WN +G C + SQ+ ++W
Sbjct: 301 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 339
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 117/308 (37%), Gaps = 29/308 (9%)
Query: 443 EMIRDKPK----YVTCLAFTQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGS-VFSI 497
+ I D P+ Y L G VL+ + ++ +W+ S I + ++ G + S+
Sbjct: 105 DRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSV 164
Query: 498 CVLKEGSIISAGGKDGRLLQFDSNLQP-----TGYEAQIAEHLGGIRTVSEGRGSQLIVG 552
+KEG+ ++ G + +D Q T + A++ +S G S I
Sbjct: 165 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI-- 222
Query: 553 TTRNCILVGSLNLGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS 612
+ + V ++ + GH+ E+ L P + G D +V +W S W
Sbjct: 223 -HHHDVRVAEHHVA---TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 278
Query: 613 K-DIAEQAQSA----TFSPDGSIIIV--GCIAGRWLVMDSETREAYSIHTDGNEPIQVVK 665
Q Q A + P S ++ G + R + + + A D + + +
Sbjct: 279 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 338
Query: 666 FSPDGKLLALGS--RDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNS 723
+SP K L G N + +++ ++V GH+S + L S D + S +
Sbjct: 339 WSPHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAA 394
Query: 724 GDYELLYW 731
D L W
Sbjct: 395 ADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 32.7 bits (73), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 599 VQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGN 658
VQLWD + + A+ + S + I+ G +G D E + G+
Sbjct: 171 VQLWDVQQQKRL-RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 229
Query: 659 -EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM 717
+ + ++++PDG+ LA G DN + V+ + + + T H + + W
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 718 YIRSNSG---DYELLYWN--AGTC-RQIPQSSQLRDVVW 750
+ + G D + WN +G C + SQ+ ++W
Sbjct: 290 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 328
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 117/308 (37%), Gaps = 29/308 (9%)
Query: 443 EMIRDKPK----YVTCLAFTQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGS-VFSI 497
+ I D P+ Y L G VL+ + ++ +W+ S I + ++ G + S+
Sbjct: 94 DRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSV 153
Query: 498 CVLKEGSIISAGGKDGRLLQFDSNLQP-----TGYEAQIAEHLGGIRTVSEGRGSQLIVG 552
+KEG+ ++ G + +D Q T + A++ +S G S I
Sbjct: 154 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI-- 211
Query: 553 TTRNCILVGSLNLGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS 612
+ + V ++ + GH+ E+ L P + G D +V +W S W
Sbjct: 212 -HHHDVRVAEHHVA---TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 267
Query: 613 K-DIAEQAQSA----TFSPDGSIIIV--GCIAGRWLVMDSETREAYSIHTDGNEPIQVVK 665
Q Q A + P S ++ G + R + + + A D + + +
Sbjct: 268 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 327
Query: 666 FSPDGKLLALGS--RDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNS 723
+SP K L G N + +++ ++V GH+S + L S D + S +
Sbjct: 328 WSPHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAA 383
Query: 724 GDYELLYW 731
D L W
Sbjct: 384 ADETLRLW 391
>pdb|4I82|A Chain A, Crystal Structure Of Hypothetical Thioesterase Protein
Sp_1851 From Streptococcus Pneumoniae Tigr4
pdb|4I82|B Chain B, Crystal Structure Of Hypothetical Thioesterase Protein
Sp_1851 From Streptococcus Pneumoniae Tigr4
Length = 137
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 469 NGNIIVWTRGSNTISKFIRNVHEGSVFSICVLKEGSIISAGGKDGRLLQFDSNLQPTG 526
+G+++V T+ N+ + N H G +F++C G ++ + G DG LQ N G
Sbjct: 25 DGHVVVTTKVVNSSLNYYGNAHGGYLFTLCDQISGLVVISLGLDGVTLQSSINYLKAG 82
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 8/159 (5%)
Query: 599 VQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGN 658
VQLWD + + A+ + S + I+ G +G D E + G+
Sbjct: 91 VQLWDVQQQKRL-RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGH 149
Query: 659 -EPIQVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM 717
+ + ++++PDG+ LA G DN + V+ + + + T H + + W
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209
Query: 718 YIRSNSG---DYELLYWN--AGTC-RQIPQSSQLRDVVW 750
+ + G D + WN +G C + SQ+ ++W
Sbjct: 210 NVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILW 248
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 63/308 (20%), Positives = 117/308 (37%), Gaps = 29/308 (9%)
Query: 443 EMIRDKPK----YVTCLAFTQGGEVLSGDSNGNIIVWTRGSNTISKFIRNVHEGS-VFSI 497
+ I D P+ Y L G VL+ + ++ +W+ S I + ++ G + S+
Sbjct: 14 DRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSV 73
Query: 498 CVLKEGSIISAGGKDGRLLQFDSNLQP-----TGYEAQIAEHLGGIRTVSEGRGSQLIVG 552
+KEG+ ++ G + +D Q T + A++ +S G S I
Sbjct: 74 AWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHI-- 131
Query: 553 TTRNCILVGSLNLGFSPVVLGHTDELWALAAHPSLSQFLTAGFDRIVQLWDSMSHSVVWS 612
+ + V ++ + GH+ E+ L P + G D +V +W S W
Sbjct: 132 -HHHDVRVAEHHVA---TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV 187
Query: 613 K-DIAEQAQSA----TFSPDGSIIIV--GCIAGRWLVMDSETREAYSIHTDGNEPIQVVK 665
Q Q A + P S ++ G + R + + + A D + + +
Sbjct: 188 PLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSIL 247
Query: 666 FSPDGKLLALGS--RDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNS 723
+SP K L G N + +++ ++V GH+S + L S D + S +
Sbjct: 248 WSPHYKELISGHGFAQNQLVIWKYP----TMAKVAELKGHTSRVLSLTMSPDGATVASAA 303
Query: 724 GDYELLYW 731
D L W
Sbjct: 304 ADETLRLW 311
>pdb|3BWS|A Chain A, Crystal Structure Of The Leptospiral Antigen Lp49
pdb|3BWS|B Chain B, Crystal Structure Of The Leptospiral Antigen Lp49
Length = 433
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 17/107 (15%)
Query: 599 VQLWDSMSHSVVWSKDIAEQAQSATFSPDGSIIIVGC---------------IAGRWLVM 643
++++D V S + ++ + SPDG + V C + G+ V+
Sbjct: 327 IEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVI 386
Query: 644 DSETREAYSIHTDGNEPIQVVKFSPDGKLLALGS-RDNYIYVYEVSG 689
D+ T GN+P + SPD + L + D+ I VY G
Sbjct: 387 DTTTDTVKEFWEAGNQPTG-LDVSPDNRYLVISDFLDHQIRVYRRDG 432
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 610 VWSKDIAEQAQSAT--------FSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPI 661
+W K+ E + T D +II G V D T E + E +
Sbjct: 157 IWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
Query: 662 QVVKFSPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRS 721
++F + ++ S+D I V++++ + R GH + + +D+ D YI S
Sbjct: 217 LHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLR-RVLVGHRAAVNVVDF--DDKYIVS 271
Query: 722 NSGDYELLYWNAGTC 736
SGD + WN TC
Sbjct: 272 ASGDRTIKVWNTSTC 286
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 623 TFSPDGSIIIVGCIAGRWLVMDSETREA----YSIHTDGNEPIQVVKFSPDGK------- 671
+ SP + I G + G+ L+ D ++RE ++ T I + + P K
Sbjct: 495 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT---SKINAISWKPAEKGANEEEI 551
Query: 672 ---LLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYEL 728
L+A GS D I++Y V R + H + +L W S + S+ D +
Sbjct: 552 EEDLVATGSLDTNIFIYSV---KRPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACI 607
Query: 729 LYWNA 733
WN
Sbjct: 608 KRWNV 612
>pdb|1DEQ|A Chain A, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|D Chain D, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|N Chain N, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|Q Chain Q, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 390
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 15 HDDMLETENESLRERVSDLEKKVLEHGDEIVCLRSTLADVLRRLAQLE 62
+D+ + NE LR R+ L +KV+E I L+ + D L + +LE
Sbjct: 107 NDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLE 154
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 623 TFSPDGSIIIVGCIAGRWLVMDSETREA----YSIHTDGNEPIQVVKFSPDGK------- 671
+ SP + I G + G+ L+ D ++RE ++ T I + + P K
Sbjct: 495 SISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRT---SKINAISWKPAEKGANEEEI 551
Query: 672 ---LLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYEL 728
L+A GS D I++Y V R + H + +L W S + S+ D +
Sbjct: 552 EEDLVATGSLDTNIFIYSV---KRPXKIIKALNAHKDGVNNLLWETPSTLV-SSGADACI 607
Query: 729 LYWNA 733
WN
Sbjct: 608 KRWNV 612
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 612 SKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGK 671
S DI+E+ AT +G++ I R L E+ + + I+ VKFSP G
Sbjct: 201 SVDISERGLIATGFNNGTVQISELSTLRPLY----NFESQHSMINNSNSIRSVKFSPQGS 256
Query: 672 LLALGSRDNY---IYVYEVSGDSR----------KYSRVGRCTGHSSFITHLDWSEDSMY 718
LLA+ N I +YE R + +G HSS++ L +++
Sbjct: 257 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE-FAHSSWVMSLSFNDSGET 315
Query: 719 IRSNSGDYELLYWNAGTCRQI 739
+ S D +L +W+ T +I
Sbjct: 316 LCSAGWDGKLRFWDVKTKERI 336
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 612 SKDIAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGK 671
S DI+E+ AT +G++ I R L E+ + + I+ VKFSP G
Sbjct: 191 SVDISERGLIATGFNNGTVQISELSTLRPLY----NFESQHSMINNSNSIRSVKFSPQGS 246
Query: 672 LLALGSRDNY---IYVYEVSGDSR----------KYSRVGRCTGHSSFITHLDWSEDSMY 718
LLA+ N I +YE R + +G HSS++ L +++
Sbjct: 247 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE-FAHSSWVMSLSFNDSGET 305
Query: 719 IRSNSGDYELLYWNAGTCRQI 739
+ S D +L +W+ T +I
Sbjct: 306 LCSAGWDGKLRFWDVKTKERI 326
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 667 SPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM---YIRSNS 723
+ + + G DN + +++ + D++ Y GHS ++ + WS + Y+ S S
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 724 GDYELLYWNAGT-----CRQIPQSSQLRDVVWESN 753
D + W + + + + DV+W ++
Sbjct: 229 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 263
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 667 SPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM---YIRSNS 723
+ + + G DN + +++ + D++ Y GHS ++ + WS + Y+ S S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 724 GDYELLYWNAGT-----CRQIPQSSQLRDVVWESN 753
D + W + + + + DV+W ++
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 615 IAEQAQSATFSPDGSIIIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLA 674
+ E ++ T SP III G ++S + +I DG + + +
Sbjct: 127 VVEFKENGTTSP---IIIDAHAIG----VNSASWAPATIEEDGEH-----NGTKESRKFV 174
Query: 675 LGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM---YIRSNSGDYELLYW 731
G DN + +++ + D++ Y GHS ++ + WS + Y+ S S D + W
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Query: 732 NAGT-----CRQIPQSSQLRDVVWESN 753
+ + + + DV+W ++
Sbjct: 235 TQDNEQGPWKKTLLKEEKFPDVLWRAS 261
>pdb|2NYN|A Chain A, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|B Chain B, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|C Chain C, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
pdb|2NYN|D Chain D, Crystal Structure Of Phenylalanine Ammonia-Lyase From
Anabaena Variabilis
Length = 565
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 280 AVAVLYNVEEQTQRHY--LGHTDDIKCLSIHPNKLLIATGQVAGHDAREGKPHIRIWN 335
A+A+++ V+ R Y GH D CLS +L A V G +P+ IWN
Sbjct: 475 AIALMFGVQAVDLRTYKKTGHYDARACLSPATERLYSAVRHVVGQKPTSDRPY--IWN 530
>pdb|3QPR|A Chain A, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|B Chain B, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|C Chain C, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|D Chain D, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|E Chain E, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|F Chain F, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
pdb|3QPR|G Chain G, Hk97 Prohead I Encapsidating Inactive Virally Encoded
Protease
Length = 385
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 578 LWALAAHPSLSQ----FLTAGFDRIVQLWDSMSHSVVWSKD 614
+W L P+ +Q F GFD Q+WD M +V S++
Sbjct: 308 MWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSRE 348
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 733 AGTCRQIPQSSQLRDVVWE---SNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIAT 788
A C P S L+ W+ S+ + ++T G+WP+ DGT C+ S + I +
Sbjct: 19 ASCCFNSPGGSLLQTQFWDYDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITS 77
>pdb|2FS3|A Chain A, Bacteriophage Hk97 K169y Head I
pdb|2FS3|B Chain B, Bacteriophage Hk97 K169y Head I
pdb|2FS3|C Chain C, Bacteriophage Hk97 K169y Head I
pdb|2FS3|D Chain D, Bacteriophage Hk97 K169y Head I
pdb|2FS3|E Chain E, Bacteriophage Hk97 K169y Head I
pdb|2FS3|F Chain F, Bacteriophage Hk97 K169y Head I
pdb|2FS3|G Chain G, Bacteriophage Hk97 K169y Head I
Length = 282
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 578 LWALAAHPSLSQ----FLTAGFDRIVQLWDSMSHSVVWSKD 614
+W L P+ +Q F GFD Q+WD M +V S++
Sbjct: 205 MWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSRE 245
>pdb|1OHG|A Chain A, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|B Chain B, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|C Chain C, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|D Chain D, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|E Chain E, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|F Chain F, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|1OHG|G Chain G, Structure Of The Dsdna Bacteriophage Hk97 Mature Empty
Capsid
pdb|2FRP|A Chain A, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|B Chain B, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|C Chain C, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|D Chain D, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|E Chain E, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|F Chain F, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FRP|G Chain G, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FSY|A Chain A, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|B Chain B, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|C Chain C, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|D Chain D, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|E Chain E, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|F Chain F, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FSY|G Chain G, Bacteriophage Hk97 Pepsin-Treated Expansion Intermediate
Iv
pdb|2FT1|A Chain A, Bacteriophage Hk97 Head Ii
pdb|2FT1|B Chain B, Bacteriophage Hk97 Head Ii
pdb|2FT1|C Chain C, Bacteriophage Hk97 Head Ii
pdb|2FT1|D Chain D, Bacteriophage Hk97 Head Ii
pdb|2FT1|E Chain E, Bacteriophage Hk97 Head Ii
pdb|2FT1|F Chain F, Bacteriophage Hk97 Head Ii
pdb|2FT1|G Chain G, Bacteriophage Hk97 Head Ii
pdb|2FTE|A Chain A, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|B Chain B, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|C Chain C, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|D Chain D, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|E Chain E, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|F Chain F, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|2FTE|G Chain G, Bacteriophage Hk97 Expansion Intermediate Iv
pdb|3DDX|A Chain A, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|B Chain B, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|C Chain C, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|D Chain D, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|E Chain E, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|F Chain F, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
pdb|3DDX|G Chain G, Hk97 Bacteriophage Capsid Expansion Intermediate-Ii Model
Length = 282
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 578 LWALAAHPSLSQ----FLTAGFDRIVQLWDSMSHSVVWSKD 614
+W L P+ +Q F GFD Q+WD M +V S++
Sbjct: 205 MWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSRE 245
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 733 AGTCRQIPQSSQLRDVVWE---SNSCTLTFTTIGIWPEGADGTDVNSCERSHDARVIAT 788
A C P S L+ W+ S+ + ++T G+WP+ DGT C+ S + I +
Sbjct: 19 ASCCFNSPGGSLLQTQFWDYDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITS 77
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 667 SPDGKLLALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSM---YIRSNS 723
+ + + G DN + +++ + D++ Y GHS ++ + WS + Y+ S S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS 226
Query: 724 GDYELLYWNAGT-----CRQIPQSSQLRDVVWESN 753
D + W + + + + DV+W ++
Sbjct: 227 QDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRAS 261
>pdb|1IF0|A Chain A, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|B Chain B, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|C Chain C, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|D Chain D, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|E Chain E, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|F Chain F, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
pdb|1IF0|G Chain G, Pseudo-Atomic Model Of Bacteriophage Hk97 Procapsid
(Prohead Ii)
Length = 256
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 578 LWALAAHPSLSQ----FLTAGFDRIVQLWDSMSHSVVWSKD 614
+W L P+ +Q F GFD Q+WD M +V S++
Sbjct: 181 MWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSRE 221
>pdb|3IZG|G Chain G, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|A Chain A, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|B Chain B, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|C Chain C, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|D Chain D, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|E Chain E, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|3IZG|F Chain F, Bacteriophage T7 Prohead Shell Em-Derived Atomic Model
pdb|2XVR|A Chain A, Phage T7 Empty Mature Head Shell
pdb|2XVR|B Chain B, Phage T7 Empty Mature Head Shell
pdb|2XVR|C Chain C, Phage T7 Empty Mature Head Shell
pdb|2XVR|D Chain D, Phage T7 Empty Mature Head Shell
pdb|2XVR|E Chain E, Phage T7 Empty Mature Head Shell
pdb|2XVR|F Chain F, Phage T7 Empty Mature Head Shell
pdb|2XVR|G Chain G, Phage T7 Empty Mature Head Shell
Length = 345
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Query: 538 IRTVSEGRGSQL-IVGTTRNCILVGSLNLGFSPVVLGHTDELWALAAHPSLSQFLTAGFD 596
+R++S G+ +Q ++G T+ L NL + HT+++ ++ LTA
Sbjct: 52 VRSISSGKSAQFPVLGRTQAAYLAPGENLDDKRKDIKHTEKVI------TIDGLLTADV- 104
Query: 597 RIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGSII 631
I + D+M+H V S+ ++ +S + DG+++
Sbjct: 105 LIYDIEDAMNHYDVRSEYTSQLGESLAMAADGAVL 139
>pdb|3J1A|A Chain A, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|B Chain B, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|C Chain C, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|D Chain D, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|E Chain E, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|F Chain F, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
pdb|3J1A|G Chain G, Hk97-Like Fold Fitted Into 3d Reconstruction Of
Bacteriophage Cw02
Length = 199
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 578 LWALAAHPSLSQ----FLTAGFDRIVQLWDSMSHSVVWSKD 614
+W L P+ +Q F GFD Q+WD M +V S++
Sbjct: 127 MWGLPVVPTKAQAAGTFTVGGFDMASQVWDRMDATVEVSRE 167
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 631 IIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGD 690
I+G G V+DS I I +KF P G+ L S+D + ++ V
Sbjct: 112 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171
Query: 691 SRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQI 739
S + + GH + +T + + + S S D + W GT I
Sbjct: 172 SNPRTLI----GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 4/109 (3%)
Query: 631 IIVGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKLLALGSRDNYIYVYEVSGD 690
I+G G V+DS I I +KF P G+ L S+D + ++ V
Sbjct: 109 FILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 168
Query: 691 SRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDYELLYWNAGTCRQI 739
S + + GH + +T + + + S S D + W GT I
Sbjct: 169 SNPRTLI----GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 18/128 (14%)
Query: 621 SATFSPDGSIII---VGCIAGRWLVMDSETREAYSIHTDGNEPIQVVKFSPDGKL----- 672
S ++ DG+ II V + W V+ + + + G I S DG L
Sbjct: 154 SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 673 ------LALGSRDNYIYVYEVSGDSRKYSRVGRCTGHSSFITHLDWSEDSMYIRSNSGDY 726
+ I+VY+++ + + G+ GH I+ L++++ + + S S D
Sbjct: 214 WVDDDKFVIPGPKGAIFVYQIT----EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDG 269
Query: 727 ELLYWNAG 734
L W+ G
Sbjct: 270 TLRIWHGG 277
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 590 FLTAGFDRIVQLWDSMSHSVVWSKDIAEQAQSATFSPDGS---IIIVGCIAGRWLVMDSE 646
F ++ FD+ +++WD+ + + E S SP + ++ VG + + D +
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174
Query: 647 TREAYSIHTDGNEPIQVVKFSPD-GKLLALGSRDNYIYVYEV---SG--------DSRKY 694
+ I + I V +SP +LA S D+ + +++V SG + +K
Sbjct: 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 695 SRVGRC-TGHSSFITHLDWSEDSMYIRSNSGDYELLYWNA 733
V T H+ + L ++ D +++ + D + WN+
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,736,306
Number of Sequences: 62578
Number of extensions: 1059613
Number of successful extensions: 2895
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 2307
Number of HSP's gapped (non-prelim): 362
length of query: 811
length of database: 14,973,337
effective HSP length: 107
effective length of query: 704
effective length of database: 8,277,491
effective search space: 5827353664
effective search space used: 5827353664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)