BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9773
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 130 bits (326), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 96/164 (58%), Gaps = 19/164 (11%)
Query: 5 VVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSI 64
V K+ D +YF +Y+ L K ML D VR +AY A+ N + F GKTVLDVGTG+G
Sbjct: 19 VDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILA 78
Query: 65 LLQGHG-------------VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDI 111
+ DH K + LDH I+EVI+ +E++ LPEKVD+
Sbjct: 79 IWSAQAGARKVYAVEATKMADHARALVKANNLDH------IVEVIEGSVEDISLPEKVDV 132
Query: 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
I+SEWMG++LL ESM DSVI ARD++LKP GVMYP + AP
Sbjct: 133 IISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAP 176
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 117 bits (293), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 18/170 (10%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-KSILLQGHGVD 72
YF+SY +H+ ML DTVR +YR AI N ++F K VLDVG GTG S+ HG
Sbjct: 3 YFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK 62
Query: 73 HH---------SFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122
H ++ L+ ++ + + +++ K+E+V LP KVDII+SEWMG++LL
Sbjct: 63 HVIGVDMSSIIEMAKELVELNGFSDK---ITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119
Query: 123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSA----PSYSPEIFKFWENI 168
+ESM+D+V++ARD +L G+++P KC +H A Y E +W+++
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDV 169
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
YF+SY +H+ ML D VR YR ++ N ++F K VLDVG+GTG +
Sbjct: 22 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 81
Query: 74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
+ + YA + + ++ +I+ K+E VELP EKVDII+SEWMG+ L +ES
Sbjct: 82 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 141
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
M+++V+ ARDK+L P+G+++P + L+ Y +WEN+
Sbjct: 142 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 188
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
YF+SY +H+ ML D VR YR ++ N ++F K VLDVG+GTG +
Sbjct: 25 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 84
Query: 74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
+ + YA + + ++ +I+ K+E VELP EKVDII+SEWMG+ L +ES
Sbjct: 85 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 144
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
M+++V+ ARDK+L P+G+++P + L+ Y +WEN+
Sbjct: 145 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 191
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
YF+SY +H+ ML D VR YR ++ N ++F K VLDVG+GTG +
Sbjct: 35 YFDSYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 94
Query: 74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
+ + YA + + ++ +I+ K+E VELP EKVDII+SEWMG+ L ++S
Sbjct: 95 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQS 154
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
M+++V+ ARDK+L P+G+++P + L+ Y +WEN+
Sbjct: 155 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 201
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 6 VKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSIL 65
K ++ Y+E Y+D+ VH+ M+ D VR +AYR I N GKTVLDVG GTG +
Sbjct: 40 TKRERDQLYYECYSDVSVHEEMIADRVRTDAYRLGILRNWAALRGKTVLDVGAGTGILSI 99
Query: 66 LQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKI-------ENVELPEKVDIIVSEWMG 118
+ + + A + + +++++ E VELPE+VD IVSEWMG
Sbjct: 100 FCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG 159
Query: 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
+ LLHESM+ SV+ AR K+LK G++ P L P
Sbjct: 160 YGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVP 196
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 95/167 (56%), Gaps = 12/167 (7%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
YF+SY +H+ +L D VR YR ++ N ++F K VLDVG+GTG +
Sbjct: 31 YFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR 90
Query: 74 HSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
+ + YA + + ++ +I+ K+E VELP EKVDII+SEWMG+ L +ES
Sbjct: 91 KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYES 150
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
M+++V+ ARDK+L P+G+++P + L+ Y +WEN+
Sbjct: 151 MLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENV 197
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 94/167 (56%), Gaps = 12/167 (7%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG-------KSILL 66
YF SY +H+ ML D +R E+YR I NP+IF K VLDVG GTG K+
Sbjct: 29 YFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK 88
Query: 67 QGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHES 125
+ GVD + + + +I+ KIE V LP EKVD+I+SEWMG++LL ES
Sbjct: 89 KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFES 148
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILH----SAPSYSPEIFKFWENI 168
M+DSV++A++K+L G +YP C + S + + FW+++
Sbjct: 149 MLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDV 195
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 93/172 (54%), Gaps = 22/172 (12%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
YF SY +H+ ML D VR E+YR I NP+IF K VLDVG GTG +
Sbjct: 10 YFSSYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAK---- 65
Query: 74 HSFCTKVHPLDHYAPQYLILEVIQ------------NKIENVELP-EKVDIIVSEWMGFY 120
+ KV +D Y +++I+ KIE V LP EKVD+I+SEWMG++
Sbjct: 66 -AGAKKVIAVDQSEILYQAMDIIRLNKLEDTIVLIKGKIEEVSLPVEKVDVIISEWMGYF 124
Query: 121 LLHESMIDSVIFARDKFLKPEGVMYPYKCILH----SAPSYSPEIFKFWENI 168
LL ESM+DSV++A+ K+L G +YP C + S S + FW+++
Sbjct: 125 LLFESMLDSVLYAKSKYLAKGGSVYPDICTISLVAVSDVSKHADRIAFWDDV 176
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 1 MDMEVVKDHDEE----EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDV 56
++ V + EE +YF+ Y L + M+ D VR Y+ AI N F K VLDV
Sbjct: 106 LERSVFSERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDV 165
Query: 57 GTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEK 108
G G+G + + + +A + L+ + VI K+E V LPE+
Sbjct: 166 GCGSGILSFFAAQAGARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224
Query: 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
VDII+SE MG+ L +E M++S + A+ K+LKP G M+P +H AP
Sbjct: 225 VDIIISEPMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 270
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 4 EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKS 63
E ++ +YF+ Y L + M+ D VR Y+ AI N F K VLDVG G+G
Sbjct: 5 ERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL 64
Query: 64 ILLQGHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSE 115
+ + + +A + L+ + VI K+E V LPE+VDII+SE
Sbjct: 65 SFFAAQAGARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISE 123
Query: 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
MG+ L +E M++S + A+ K+LKP G M+P +H AP
Sbjct: 124 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 162
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/160 (34%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 4 EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKS 63
E ++ +YF+ Y L + M+ D VR Y+ AI N F K VLDVG G+G
Sbjct: 1 ERTEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGIL 60
Query: 64 ILLQGHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSE 115
+ + + +A + L+ + VI K+E V LPE+VDII+SE
Sbjct: 61 SFFAAQAGARKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISE 119
Query: 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
MG+ L +E M++S + A+ K+LKP G M+P +H AP
Sbjct: 120 PMGYMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 158
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 87.4 bits (215), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 10/151 (6%)
Query: 13 EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVD 72
+YF+ Y L + M+ D VR Y+ AI N F K VLDVG G+G
Sbjct: 9 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA 68
Query: 73 HHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSEWMGFYLLHE 124
+ + + +A + L+ + VI K+E V LPE+VDII+SE MG+ L +E
Sbjct: 69 RKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 127
Query: 125 SMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
M++S + A+ K+LKP G M+P +H AP
Sbjct: 128 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 157
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 10/151 (6%)
Query: 13 EYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVD 72
+YF+ Y L + M+ D VR Y+ AI N F K VLDVG G+G
Sbjct: 5 QYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGA 64
Query: 73 HHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSEWMGFYLLHE 124
+ + + +A + L+ + VI K+E V LPE+VDII+SE MG+ L +E
Sbjct: 65 RKIYAVEASTMAQHA-EVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNE 123
Query: 125 SMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
M++S + A+ K+LKP G M+P +H AP
Sbjct: 124 RMLESYLHAK-KYLKPSGNMFPTIGDVHLAP 153
>pdb|2QQH|A Chain A, Structure Of C8a-Macpf Reveals Mechanism Of Membrane
Attack In Complement Immune Defense
Length = 334
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 10 DEEEYFES-YTDLEVHKLMLDDT-VRNEAYRAAICDNPNIFAGKTVLD--------VGTG 59
D+E+YF Y L+ H L DT + +E Y DN N K D +G G
Sbjct: 71 DDEKYFRKPYNFLKYHFEALADTGISSEFY-----DNANDLLSKVKKDKSDSFGVTIGIG 125
Query: 60 TGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGF 119
S LL G GV H + ++ L+ Y + I I K++ + D I
Sbjct: 126 PAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDI------- 178
Query: 120 YLLHESMIDSVIFARDKF 137
+L E M+ S++ D++
Sbjct: 179 -MLDEGMLQSLMELPDQY 195
>pdb|2RD7|A Chain A, Human Complement Membrane Attack Proteins Share A Common
Fold With Bacterial Cytolysins
Length = 367
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 10 DEEEYFES-YTDLEVHKLMLDDT-VRNEAYRAAICDNPNIFAGKTVLD--------VGTG 59
D+E+YF Y L+ H L DT + +E Y DN N K D +G G
Sbjct: 76 DDEKYFRKPYNFLKYHFEALADTGISSEFY-----DNANDLLSKVKKDKSDSFGVTIGIG 130
Query: 60 TGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGF 119
S LL G GV H + ++ L+ Y + I I K++ + D I
Sbjct: 131 PAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDI------- 183
Query: 120 YLLHESMIDSVIFARDKF 137
+L E M+ S++ D++
Sbjct: 184 -MLDEGMLQSLMELPDQY 200
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 10 DEEEYFES-YTDLEVHKLMLDDT-VRNEAYRAAICDNPNIFAGKTVLD--------VGTG 59
D+E+YF Y L+ H L DT + +E Y DN N K D +G G
Sbjct: 171 DDEKYFRKPYNFLKYHFEALADTGISSEFY-----DNANDLLSKVKKDKSDSFGVTIGIG 225
Query: 60 TGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGF 119
S LL G GV H + ++ L+ Y + I I K++ + D I
Sbjct: 226 PAGSPLLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDI------- 278
Query: 120 YLLHESMIDSVIFARDKF 137
+L E M+ S++ D++
Sbjct: 279 -MLDEGMLQSLMELPDQY 295
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 95 VIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSA 154
V+ + PEK DIIVSE +G + +E + + FLK +GV P + + A
Sbjct: 435 VVSGDXREWKAPEKADIIVSELLGSFGDNE-LSPECLDGAQHFLKDDGVSIPGEYTSYLA 493
Query: 155 PSYSPEIF 162
P S +++
Sbjct: 494 PISSSKLY 501
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIE 101
G TVLD+G GTG+ + L V H V LD+ LEV + +E
Sbjct: 84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQ------LEVARKYVE 129
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 95 VIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSA 154
V+ + + PEK DIIVSE +G + +E + + FLK +GV P + A
Sbjct: 415 VVSSDMREWVAPEKADIIVSELLGSFADNE-LSPECLDGAQHFLKDDGVSIPGEYTSFLA 473
Query: 155 PSYSPEIF 162
P S +++
Sbjct: 474 PISSSKLY 481
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 40 AICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLI---LEV 95
AI + N+ G + D+G GTG S+ L G+ F V P Q ++ +E
Sbjct: 25 AIINLLNLPKGSVIADIGAGTGGYSVALANQGL----FVYAVEPSIVXRQQAVVHPQVEW 80
Query: 96 IQNKIENVELPEK-VDIIVS 114
EN+ LP+K VD ++S
Sbjct: 81 FTGYAENLALPDKSVDGVIS 100
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c
From The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c
From The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 41 ICDNPNIFAGKTVLDVGTGTG 61
+C P + AGKTV ++G G G
Sbjct: 71 LCWQPELIAGKTVCELGAGAG 91
>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 248
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGK--SILLQ 67
+E I + NI G TV++VG GTG +LLQ
Sbjct: 15 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQ 50
>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom
Resolution
pdb|3FTD|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.44-Angstrom
Resolution
pdb|3FTE|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna
pdb|3FTF|A Chain A, Crystal Structure Of A. Aeolicus Ksga In Complex With
Rna And Sah
Length = 249
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGK--SILLQ 67
+E I + NI G TV++VG GTG +LLQ
Sbjct: 16 SEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQ 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,719,897
Number of Sequences: 62578
Number of extensions: 237604
Number of successful extensions: 607
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 32
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)