Query psy9773
Match_columns 252
No_of_seqs 192 out of 1918
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 19:14:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1499|consensus 99.9 3.6E-26 7.8E-31 205.0 10.0 169 9-187 20-210 (346)
2 KOG1500|consensus 99.9 1E-21 2.2E-26 174.9 12.0 160 9-179 137-322 (517)
3 COG2226 UbiE Methylase involve 99.7 1E-15 2.2E-20 133.1 12.6 107 34-153 36-161 (238)
4 PF12847 Methyltransf_18: Meth 99.6 8.4E-15 1.8E-19 111.9 9.7 90 49-148 1-111 (112)
5 PF01209 Ubie_methyltran: ubiE 99.6 4E-15 8.6E-20 129.5 7.6 101 37-150 35-155 (233)
6 PLN02233 ubiquinone biosynthes 99.5 7.9E-14 1.7E-18 123.3 13.0 101 37-150 61-184 (261)
7 PF08241 Methyltransf_11: Meth 99.5 3.2E-14 6.9E-19 104.6 8.7 80 54-146 1-95 (95)
8 COG2227 UbiG 2-polyprenyl-3-me 99.5 3.3E-14 7.3E-19 122.5 6.8 89 48-150 58-163 (243)
9 TIGR00452 methyltransferase, p 99.5 1.8E-13 3.8E-18 124.0 10.4 96 41-149 113-226 (314)
10 PRK15068 tRNA mo(5)U34 methylt 99.5 2.4E-13 5.2E-18 123.7 11.0 91 46-149 119-227 (322)
11 PLN02396 hexaprenyldihydroxybe 99.5 2.2E-13 4.8E-18 123.8 10.7 89 48-150 130-237 (322)
12 TIGR02752 MenG_heptapren 2-hep 99.5 5.1E-13 1.1E-17 115.2 12.4 102 36-150 32-153 (231)
13 PRK14103 trans-aconitate 2-met 99.5 3.7E-13 8.1E-18 118.2 10.9 92 45-149 25-127 (255)
14 PF13847 Methyltransf_31: Meth 99.5 4.7E-13 1E-17 108.5 9.9 90 48-150 2-112 (152)
15 PLN02244 tocopherol O-methyltr 99.4 1.1E-12 2.3E-17 120.3 12.2 89 48-149 117-224 (340)
16 PRK10258 biotin biosynthesis p 99.4 1.9E-12 4.2E-17 113.2 13.3 98 39-150 32-142 (251)
17 PF13489 Methyltransf_23: Meth 99.4 2.1E-13 4.6E-18 110.0 6.7 91 47-151 20-118 (161)
18 PRK11207 tellurite resistance 99.4 7.9E-13 1.7E-17 112.1 10.2 89 47-147 28-133 (197)
19 PRK01683 trans-aconitate 2-met 99.4 1.6E-12 3.5E-17 114.0 11.7 97 41-150 23-132 (258)
20 PF05185 PRMT5: PRMT5 arginine 99.4 1E-12 2.3E-17 124.2 10.7 124 27-161 156-310 (448)
21 PTZ00098 phosphoethanolamine N 99.4 1.7E-12 3.7E-17 114.9 11.1 95 45-150 48-158 (263)
22 TIGR00477 tehB tellurite resis 99.4 1.3E-12 2.7E-17 110.7 9.5 89 47-147 28-132 (195)
23 KOG1270|consensus 99.4 5.9E-13 1.3E-17 115.8 7.0 85 50-150 90-197 (282)
24 PLN02336 phosphoethanolamine N 99.4 1.2E-11 2.5E-16 117.9 14.0 93 45-150 262-371 (475)
25 PRK15451 tRNA cmo(5)U34 methyl 99.4 4.5E-12 9.8E-17 111.0 10.3 92 47-150 54-166 (247)
26 PRK11036 putative S-adenosyl-L 99.3 4.9E-12 1.1E-16 111.2 10.0 88 48-149 43-150 (255)
27 PF03848 TehB: Tellurite resis 99.3 7.1E-12 1.5E-16 105.8 10.4 91 46-148 27-133 (192)
28 TIGR02072 BioC biotin biosynth 99.3 1.3E-11 2.9E-16 105.8 11.9 89 48-149 33-136 (240)
29 PF05401 NodS: Nodulation prot 99.3 5.5E-12 1.2E-16 106.1 9.2 92 47-149 41-147 (201)
30 PF02353 CMAS: Mycolic acid cy 99.3 8.4E-12 1.8E-16 111.1 10.7 98 38-149 51-167 (273)
31 PRK08317 hypothetical protein; 99.3 1.2E-11 2.6E-16 105.8 11.4 101 37-150 7-126 (241)
32 PF08003 Methyltransf_9: Prote 99.3 5.1E-12 1.1E-16 112.6 9.2 91 46-149 112-220 (315)
33 PRK00107 gidB 16S rRNA methylt 99.3 1.4E-11 3E-16 103.9 11.1 88 46-150 42-147 (187)
34 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 3E-11 6.5E-16 102.7 12.2 93 45-150 35-145 (223)
35 TIGR00740 methyltransferase, p 99.3 1.6E-11 3.4E-16 106.8 10.1 92 47-150 51-163 (239)
36 PRK12335 tellurite resistance 99.3 1.3E-11 2.9E-16 110.4 9.6 88 48-147 119-222 (287)
37 TIGR00138 gidB 16S rRNA methyl 99.3 1.8E-11 3.9E-16 102.6 9.6 85 48-149 41-143 (181)
38 PRK00216 ubiE ubiquinone/menaq 99.3 3.8E-11 8.3E-16 103.1 11.8 92 46-150 48-160 (239)
39 KOG1540|consensus 99.3 6.1E-11 1.3E-15 103.0 12.4 101 37-150 88-216 (296)
40 PRK11873 arsM arsenite S-adeno 99.3 2.5E-11 5.4E-16 107.5 10.4 93 45-150 73-185 (272)
41 PF08242 Methyltransf_12: Meth 99.3 5.8E-12 1.2E-16 94.5 4.9 78 54-144 1-99 (99)
42 PRK05785 hypothetical protein; 99.3 2.5E-11 5.4E-16 105.2 9.5 82 48-142 50-141 (226)
43 smart00828 PKS_MT Methyltransf 99.2 2.3E-11 5E-16 104.4 8.4 86 51-149 1-105 (224)
44 PLN02336 phosphoethanolamine N 99.2 5.1E-11 1.1E-15 113.5 11.6 94 45-150 33-144 (475)
45 COG2230 Cfa Cyclopropane fatty 99.2 7.3E-11 1.6E-15 104.8 11.6 100 38-150 61-178 (283)
46 PRK06922 hypothetical protein; 99.2 6.8E-11 1.5E-15 115.2 11.4 94 46-149 415-538 (677)
47 PF13649 Methyltransf_25: Meth 99.2 2E-11 4.3E-16 92.2 6.1 79 53-142 1-101 (101)
48 PF05175 MTS: Methyltransferas 99.2 1.3E-10 2.8E-15 96.3 11.3 91 49-149 31-141 (170)
49 PRK11188 rrmJ 23S rRNA methylt 99.2 7.8E-11 1.7E-15 100.9 9.9 94 45-148 47-165 (209)
50 smart00138 MeTrc Methyltransfe 99.2 6.8E-11 1.5E-15 104.8 9.8 58 92-150 186-244 (264)
51 PF13659 Methyltransf_26: Meth 99.2 4.7E-11 1E-15 91.8 7.3 90 50-149 1-116 (117)
52 PLN02490 MPBQ/MSBQ methyltrans 99.2 1.3E-10 2.9E-15 106.3 11.1 88 48-148 112-215 (340)
53 TIGR02469 CbiT precorrin-6Y C5 99.2 2.7E-10 5.9E-15 87.9 11.3 88 45-148 15-122 (124)
54 PRK11705 cyclopropane fatty ac 99.2 1.8E-10 3.8E-15 107.3 11.5 96 41-149 159-268 (383)
55 COG2264 PrmA Ribosomal protein 99.2 8.2E-11 1.8E-15 105.3 8.8 87 46-148 159-263 (300)
56 TIGR03587 Pse_Me-ase pseudamin 99.2 2.4E-10 5.1E-15 97.6 11.3 89 46-148 40-142 (204)
57 KOG4300|consensus 99.2 2.4E-10 5.1E-15 96.6 10.1 87 50-149 77-183 (252)
58 PF06325 PrmA: Ribosomal prote 99.2 1.1E-10 2.4E-15 104.9 8.4 94 35-149 149-260 (295)
59 PRK15001 SAM-dependent 23S rib 99.1 3.2E-10 7E-15 105.1 11.6 94 46-149 225-341 (378)
60 PRK05134 bifunctional 3-demeth 99.1 2.4E-10 5.2E-15 98.7 10.0 96 40-149 39-152 (233)
61 TIGR00537 hemK_rel_arch HemK-r 99.1 2.3E-10 4.9E-15 95.3 9.3 92 47-150 17-142 (179)
62 TIGR01983 UbiG ubiquinone bios 99.1 6.8E-10 1.5E-14 95.0 12.2 106 30-149 26-150 (224)
63 COG4106 Tam Trans-aconitate me 99.1 1.2E-10 2.6E-15 98.9 7.0 97 45-153 26-134 (257)
64 COG4123 Predicted O-methyltran 99.1 2E-10 4.4E-15 100.3 8.5 95 46-150 41-172 (248)
65 TIGR03840 TMPT_Se_Te thiopurin 99.1 5.8E-10 1.3E-14 95.9 11.0 90 48-149 33-153 (213)
66 PRK08287 cobalt-precorrin-6Y C 99.1 8.3E-10 1.8E-14 92.5 11.4 87 45-148 27-131 (187)
67 TIGR00406 prmA ribosomal prote 99.1 6.6E-10 1.4E-14 99.6 11.3 86 47-149 157-260 (288)
68 PLN03075 nicotianamine synthas 99.1 6.6E-10 1.4E-14 99.6 11.1 91 49-149 123-234 (296)
69 TIGR02716 C20_methyl_CrtF C-20 99.1 5.6E-10 1.2E-14 100.6 10.8 100 39-150 139-256 (306)
70 PRK00121 trmB tRNA (guanine-N( 99.1 2.4E-10 5.3E-15 97.2 7.9 91 49-149 40-157 (202)
71 PRK14967 putative methyltransf 99.1 7.5E-10 1.6E-14 95.5 11.1 95 46-150 33-161 (223)
72 PF07021 MetW: Methionine bios 99.1 2.7E-10 5.9E-15 95.6 7.9 89 46-150 10-111 (193)
73 TIGR00438 rrmJ cell division p 99.1 6.7E-10 1.4E-14 93.2 9.7 94 45-148 28-146 (188)
74 PRK06202 hypothetical protein; 99.1 1.8E-09 3.8E-14 93.5 11.7 89 47-148 58-166 (232)
75 PRK11088 rrmA 23S rRNA methylt 99.1 1.5E-09 3.2E-14 96.4 11.2 83 48-150 84-183 (272)
76 PRK13944 protein-L-isoaspartat 99.1 1.4E-09 2.9E-14 92.8 10.5 90 41-149 64-174 (205)
77 TIGR02021 BchM-ChlM magnesium 99.1 2.3E-09 5.1E-14 91.9 12.0 87 47-147 53-157 (219)
78 PRK13255 thiopurine S-methyltr 99.0 1E-09 2.3E-14 94.6 9.4 88 47-146 35-153 (218)
79 PRK04266 fibrillarin; Provisio 99.0 1.9E-09 4.1E-14 93.5 11.1 89 45-148 68-176 (226)
80 PRK09489 rsmC 16S ribosomal RN 99.0 1.8E-09 3.8E-14 99.2 11.0 92 48-150 195-305 (342)
81 TIGR01177 conserved hypothetic 99.0 1.5E-09 3.3E-14 98.9 10.6 103 37-150 170-296 (329)
82 TIGR00080 pimt protein-L-isoas 99.0 2.2E-09 4.8E-14 92.0 10.3 86 45-149 73-178 (215)
83 PRK13942 protein-L-isoaspartat 99.0 2.3E-09 5E-14 91.9 10.3 90 41-149 68-177 (212)
84 PF03291 Pox_MCEL: mRNA cappin 99.0 2.1E-09 4.6E-14 98.1 10.5 93 48-150 61-188 (331)
85 PRK00517 prmA ribosomal protei 99.0 2.7E-09 5.8E-14 93.7 9.8 87 47-149 117-214 (250)
86 PRK00377 cbiT cobalt-precorrin 99.0 3.6E-09 7.9E-14 89.6 10.3 91 44-150 35-147 (198)
87 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.7E-09 3.6E-14 91.5 8.0 92 49-150 16-134 (194)
88 cd02440 AdoMet_MTases S-adenos 99.0 4.4E-09 9.6E-14 76.6 8.8 84 52-147 1-103 (107)
89 PF05148 Methyltransf_8: Hypot 98.9 6.1E-09 1.3E-13 88.5 10.0 97 35-150 61-160 (219)
90 COG2242 CobL Precorrin-6B meth 98.9 8.2E-09 1.8E-13 86.3 10.6 94 40-150 25-137 (187)
91 TIGR03438 probable methyltrans 98.9 5.7E-09 1.2E-13 94.1 9.8 92 47-149 61-178 (301)
92 PTZ00146 fibrillarin; Provisio 98.9 1.8E-08 3.9E-13 90.2 12.5 101 34-149 114-238 (293)
93 PRK07402 precorrin-6B methylas 98.9 1.1E-08 2.4E-13 86.4 10.5 97 37-150 28-144 (196)
94 PRK00312 pcm protein-L-isoaspa 98.9 1.3E-08 2.7E-13 87.0 10.5 88 42-149 71-176 (212)
95 PRK14968 putative methyltransf 98.9 1.4E-08 3E-13 84.2 10.5 92 48-150 22-150 (188)
96 KOG3045|consensus 98.9 1.5E-08 3.3E-13 88.3 10.9 87 46-150 177-266 (325)
97 PF00891 Methyltransf_2: O-met 98.9 2E-08 4.3E-13 87.4 11.6 97 41-150 92-201 (241)
98 KOG2899|consensus 98.9 3.5E-09 7.7E-14 91.4 6.5 93 45-148 54-209 (288)
99 TIGR02081 metW methionine bios 98.9 6.3E-09 1.4E-13 87.7 7.9 80 48-140 12-104 (194)
100 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.3E-08 2.8E-13 94.4 10.2 89 48-149 121-236 (390)
101 TIGR03533 L3_gln_methyl protei 98.9 1.9E-08 4.1E-13 90.1 10.7 92 49-150 121-253 (284)
102 TIGR03534 RF_mod_PrmC protein- 98.8 3E-08 6.4E-13 86.1 11.2 91 49-149 87-218 (251)
103 PRK09328 N5-glutamine S-adenos 98.8 2.3E-08 4.9E-13 88.3 10.6 106 34-149 93-239 (275)
104 COG4976 Predicted methyltransf 98.8 9.1E-10 2E-14 94.4 1.6 125 11-150 87-227 (287)
105 KOG1271|consensus 98.8 9.4E-09 2E-13 85.4 7.4 91 51-151 69-184 (227)
106 PRK10909 rsmD 16S rRNA m(2)G96 98.8 1.8E-08 3.8E-13 85.8 9.1 90 48-151 52-162 (199)
107 COG2813 RsmC 16S RNA G1207 met 98.8 2.7E-08 5.9E-13 88.9 10.4 102 37-149 146-267 (300)
108 PRK11805 N5-glutamine S-adenos 98.8 2.9E-08 6.4E-13 89.8 10.5 90 51-150 135-265 (307)
109 PHA03411 putative methyltransf 98.8 3.7E-08 8E-13 87.4 10.9 103 49-161 64-198 (279)
110 PRK00811 spermidine synthase; 98.8 1.5E-08 3.3E-13 90.7 8.6 93 48-150 75-193 (283)
111 PRK07580 Mg-protoporphyrin IX 98.8 6.7E-08 1.5E-12 82.9 12.2 85 47-145 61-163 (230)
112 TIGR00536 hemK_fam HemK family 98.8 3.5E-08 7.6E-13 88.2 10.7 90 51-150 116-246 (284)
113 PRK11783 rlmL 23S rRNA m(2)G24 98.8 1.3E-08 2.7E-13 101.7 8.4 93 48-150 537-658 (702)
114 PHA03412 putative methyltransf 98.8 3.3E-08 7.2E-13 85.9 9.7 91 49-149 49-164 (241)
115 PRK14966 unknown domain/N5-glu 98.8 3.9E-08 8.4E-13 92.0 10.8 107 31-150 235-383 (423)
116 KOG2361|consensus 98.8 2.1E-08 4.6E-13 86.6 8.2 92 52-152 74-187 (264)
117 PRK10901 16S rRNA methyltransf 98.8 5.2E-08 1.1E-12 92.0 11.4 98 46-153 241-377 (427)
118 COG2519 GCD14 tRNA(1-methylade 98.8 4E-08 8.6E-13 85.7 9.6 94 41-152 86-199 (256)
119 PF05891 Methyltransf_PK: AdoM 98.8 2E-08 4.3E-13 85.9 7.6 90 49-149 55-162 (218)
120 PF03141 Methyltransf_29: Puta 98.8 2.1E-09 4.5E-14 101.3 1.8 150 35-205 99-283 (506)
121 PRK15128 23S rRNA m(5)C1962 me 98.8 2.1E-08 4.5E-13 93.8 8.4 95 48-153 219-344 (396)
122 PRK14904 16S rRNA methyltransf 98.8 6E-08 1.3E-12 92.0 11.5 97 46-152 247-381 (445)
123 PRK14903 16S rRNA methyltransf 98.8 4.4E-08 9.6E-13 92.6 10.5 97 46-152 234-370 (431)
124 COG2518 Pcm Protein-L-isoaspar 98.8 4.5E-08 9.8E-13 83.4 9.4 89 41-149 64-170 (209)
125 PLN02781 Probable caffeoyl-CoA 98.8 2.6E-08 5.6E-13 86.8 8.1 90 46-149 65-179 (234)
126 PRK14901 16S rRNA methyltransf 98.7 6.4E-08 1.4E-12 91.6 10.8 97 46-152 249-388 (434)
127 PF05724 TPMT: Thiopurine S-me 98.7 3.4E-08 7.3E-13 85.3 8.2 90 46-147 34-154 (218)
128 smart00650 rADc Ribosomal RNA 98.7 7.1E-08 1.5E-12 79.6 9.5 90 45-149 9-114 (169)
129 PRK13256 thiopurine S-methyltr 98.7 7.2E-08 1.6E-12 83.6 9.6 91 48-150 42-165 (226)
130 PF01739 CheR: CheR methyltran 98.7 8.1E-08 1.8E-12 81.6 9.7 95 49-150 31-177 (196)
131 PF01135 PCMT: Protein-L-isoas 98.7 3.7E-08 8E-13 84.5 7.6 89 42-149 65-173 (209)
132 TIGR00446 nop2p NOL1/NOP2/sun 98.7 8.4E-08 1.8E-12 85.0 10.0 97 46-152 68-203 (264)
133 TIGR03704 PrmC_rel_meth putati 98.7 1.4E-07 3E-12 83.1 11.2 92 49-150 86-218 (251)
134 KOG1975|consensus 98.7 4.6E-08 9.9E-13 87.7 8.1 96 45-150 113-239 (389)
135 PLN02585 magnesium protoporphy 98.7 8.4E-08 1.8E-12 87.1 9.9 84 48-146 143-248 (315)
136 PRK14902 16S rRNA methyltransf 98.7 7.5E-08 1.6E-12 91.3 9.9 97 46-152 247-383 (444)
137 PRK04457 spermidine synthase; 98.7 7.1E-08 1.5E-12 85.4 8.8 92 47-148 64-177 (262)
138 KOG1541|consensus 98.7 5.1E-08 1.1E-12 83.3 7.2 92 48-150 49-162 (270)
139 COG4076 Predicted RNA methylas 98.7 3.5E-08 7.6E-13 82.4 6.1 118 22-156 9-143 (252)
140 PRK13943 protein-L-isoaspartat 98.7 1.8E-07 3.9E-12 85.2 10.5 85 45-148 76-180 (322)
141 COG1092 Predicted SAM-dependen 98.6 8.9E-08 1.9E-12 89.1 8.4 98 48-155 216-343 (393)
142 KOG3010|consensus 98.6 6.7E-08 1.4E-12 83.6 7.0 85 51-150 35-139 (261)
143 PRK01544 bifunctional N5-gluta 98.6 1E-07 2.3E-12 91.8 9.0 91 49-149 138-270 (506)
144 COG2263 Predicted RNA methylas 98.6 2.3E-07 5E-12 77.6 9.7 77 44-132 40-132 (198)
145 PF10294 Methyltransf_16: Puta 98.6 9.4E-08 2E-12 79.5 7.4 93 45-150 41-158 (173)
146 TIGR00563 rsmB ribosomal RNA s 98.6 2.1E-07 4.5E-12 87.9 10.3 97 46-152 235-372 (426)
147 COG0742 N6-adenine-specific me 98.6 4.3E-07 9.3E-12 76.2 10.4 110 34-155 26-161 (187)
148 PRK13168 rumA 23S rRNA m(5)U19 98.6 3.4E-07 7.3E-12 86.9 10.8 98 37-152 285-404 (443)
149 PLN02366 spermidine synthase 98.6 2.4E-07 5.2E-12 83.9 8.8 96 48-153 90-211 (308)
150 PF03602 Cons_hypoth95: Conser 98.6 1.6E-08 3.5E-13 85.0 0.8 90 48-151 41-156 (183)
151 PRK03522 rumB 23S rRNA methylu 98.6 3.2E-07 7E-12 83.2 9.2 88 48-152 172-278 (315)
152 TIGR00417 speE spermidine synt 98.5 4.5E-07 9.8E-12 80.5 9.7 91 49-150 72-188 (270)
153 TIGR00478 tly hemolysin TlyA f 98.5 4.1E-07 8.8E-12 79.0 9.1 94 35-150 61-173 (228)
154 TIGR00095 RNA methyltransferas 98.5 4.3E-07 9.3E-12 76.7 9.0 90 47-150 47-161 (189)
155 PRK10611 chemotaxis methyltran 98.5 3.9E-07 8.4E-12 81.7 9.0 59 91-150 204-264 (287)
156 COG2890 HemK Methylase of poly 98.5 6E-07 1.3E-11 80.3 9.9 86 52-150 113-240 (280)
157 PRK01581 speE spermidine synth 98.5 3.7E-07 7.9E-12 84.1 8.0 94 47-150 148-270 (374)
158 PF10672 Methyltrans_SAM: S-ad 98.5 2.4E-07 5.2E-12 82.9 6.4 95 48-152 122-242 (286)
159 PRK03612 spermidine synthase; 98.5 3.8E-07 8.1E-12 88.3 8.2 93 48-150 296-417 (521)
160 PF08704 GCD14: tRNA methyltra 98.5 4E-07 8.7E-12 79.9 7.6 94 41-152 32-150 (247)
161 TIGR02085 meth_trns_rumB 23S r 98.5 6.6E-07 1.4E-11 83.2 9.1 86 48-150 232-336 (374)
162 COG1041 Predicted DNA modifica 98.5 7.9E-07 1.7E-11 81.0 8.9 103 35-149 183-311 (347)
163 COG1352 CheR Methylase of chem 98.4 1.9E-06 4.1E-11 76.5 10.4 95 49-150 96-243 (268)
164 TIGR00479 rumA 23S rRNA (uraci 98.4 1.2E-06 2.6E-11 82.7 9.3 88 45-149 288-397 (431)
165 PF05219 DREV: DREV methyltran 98.4 1.2E-06 2.6E-11 76.9 8.4 84 49-148 94-188 (265)
166 COG2521 Predicted archaeal met 98.4 7.6E-07 1.6E-11 76.8 6.5 94 46-149 131-246 (287)
167 PRK04148 hypothetical protein; 98.4 3.3E-06 7.2E-11 67.3 9.4 94 38-148 5-111 (134)
168 PLN02476 O-methyltransferase 98.4 1.3E-06 2.9E-11 77.9 7.8 89 46-150 115-230 (278)
169 PF06080 DUF938: Protein of un 98.3 2E-06 4.2E-11 73.3 8.1 51 107-158 101-151 (204)
170 PF02390 Methyltransf_4: Putat 98.3 1.9E-06 4.2E-11 73.1 7.9 88 52-149 20-134 (195)
171 PF01728 FtsJ: FtsJ-like methy 98.3 1.1E-06 2.3E-11 73.2 6.1 105 36-150 8-141 (181)
172 PF01596 Methyltransf_3: O-met 98.3 1.7E-06 3.6E-11 74.1 7.1 88 47-150 43-157 (205)
173 PLN02232 ubiquinone biosynthes 98.3 7.8E-07 1.7E-11 73.0 4.8 57 91-150 26-83 (160)
174 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 1.8E-06 3.9E-11 76.1 7.2 95 45-149 52-200 (256)
175 COG1189 Predicted rRNA methyla 98.3 5.1E-06 1.1E-10 71.9 9.8 102 35-152 65-182 (245)
176 PF11968 DUF3321: Putative met 98.3 3.8E-06 8.3E-11 71.9 8.9 88 51-150 53-151 (219)
177 COG0293 FtsJ 23S rRNA methylas 98.3 3.9E-06 8.4E-11 71.5 8.6 99 41-149 37-160 (205)
178 PF02527 GidB: rRNA small subu 98.3 8.8E-06 1.9E-10 68.5 10.3 89 45-150 43-150 (184)
179 KOG2904|consensus 98.3 8.2E-06 1.8E-10 72.0 10.4 91 48-149 147-286 (328)
180 PLN02672 methionine S-methyltr 98.3 3.7E-06 7.9E-11 86.9 9.3 109 31-150 99-280 (1082)
181 COG4122 Predicted O-methyltran 98.2 3.4E-06 7.3E-11 72.7 6.7 98 34-150 47-168 (219)
182 KOG1501|consensus 98.2 2E-06 4.2E-11 80.1 5.4 126 26-161 37-188 (636)
183 PRK14896 ksgA 16S ribosomal RN 98.2 6.4E-06 1.4E-10 72.7 8.4 66 40-117 20-100 (258)
184 PF12147 Methyltransf_20: Puta 98.2 2.6E-05 5.7E-10 69.5 11.8 108 36-152 122-253 (311)
185 PF08123 DOT1: Histone methyla 98.2 5.6E-06 1.2E-10 70.8 7.2 90 45-147 38-157 (205)
186 PLN02589 caffeoyl-CoA O-methyl 98.2 4.2E-06 9E-11 73.6 6.3 89 46-150 76-192 (247)
187 PF01170 UPF0020: Putative RNA 98.1 1.3E-05 2.8E-10 67.0 8.7 105 34-148 13-151 (179)
188 PRK00274 ksgA 16S ribosomal RN 98.1 7.9E-06 1.7E-10 72.7 7.6 65 41-116 34-113 (272)
189 KOG0822|consensus 98.1 8.1E-06 1.7E-10 77.6 7.5 104 50-161 368-491 (649)
190 COG3897 Predicted methyltransf 98.1 1.7E-05 3.8E-10 66.8 8.0 100 36-150 66-181 (218)
191 COG0220 Predicted S-adenosylme 98.1 1.6E-05 3.4E-10 69.1 7.9 86 51-149 50-165 (227)
192 PRK11933 yebU rRNA (cytosine-C 98.0 4.1E-05 8.9E-10 73.2 11.2 95 46-150 110-244 (470)
193 PLN02823 spermine synthase 98.0 1.8E-05 4E-10 72.5 8.2 91 49-149 103-221 (336)
194 COG3963 Phospholipid N-methylt 98.0 2.6E-05 5.7E-10 64.2 8.1 106 34-150 33-158 (194)
195 KOG2940|consensus 98.0 8E-06 1.7E-10 70.5 5.3 86 50-148 73-174 (325)
196 TIGR00755 ksgA dimethyladenosi 98.0 6E-05 1.3E-09 66.2 11.0 64 41-116 21-102 (253)
197 COG0357 GidB Predicted S-adeno 98.0 2.2E-05 4.7E-10 67.5 7.9 82 50-148 68-168 (215)
198 KOG1331|consensus 98.0 6.2E-06 1.3E-10 73.1 4.6 89 47-148 43-143 (293)
199 PRK04338 N(2),N(2)-dimethylgua 98.0 1.4E-05 3E-10 74.6 7.0 83 50-149 58-159 (382)
200 KOG3178|consensus 98.0 4.1E-05 8.9E-10 69.7 9.6 86 50-149 178-276 (342)
201 PF02475 Met_10: Met-10+ like- 98.0 2.4E-05 5.3E-10 66.7 7.2 83 46-145 98-199 (200)
202 PRK11760 putative 23S rRNA C24 98.0 3.3E-05 7E-10 70.6 8.3 77 47-141 209-296 (357)
203 TIGR02143 trmA_only tRNA (urac 97.9 4.4E-05 9.6E-10 70.5 8.7 81 51-150 199-313 (353)
204 COG0421 SpeE Spermidine syntha 97.9 6.3E-05 1.4E-09 67.4 9.4 94 51-154 78-196 (282)
205 PRK05031 tRNA (uracil-5-)-meth 97.9 5.7E-05 1.2E-09 70.0 9.1 81 51-150 208-322 (362)
206 KOG3420|consensus 97.9 4.2E-05 9E-10 61.7 7.0 68 40-117 39-123 (185)
207 PTZ00338 dimethyladenosine tra 97.9 3E-05 6.5E-10 69.9 6.8 66 39-116 26-109 (294)
208 TIGR00308 TRM1 tRNA(guanine-26 97.9 3.3E-05 7.2E-10 71.8 7.0 82 50-148 45-147 (374)
209 KOG1661|consensus 97.9 3.6E-05 7.8E-10 65.6 6.6 84 46-148 79-193 (237)
210 KOG3191|consensus 97.8 0.00017 3.8E-09 60.2 9.6 91 50-150 44-170 (209)
211 PF07942 N2227: N2227-like pro 97.8 0.00023 5E-09 63.3 11.1 59 91-152 144-206 (270)
212 PF01564 Spermine_synth: Sperm 97.7 5.9E-05 1.3E-09 66.3 6.0 93 48-150 75-193 (246)
213 COG2265 TrmA SAM-dependent met 97.7 0.00014 3E-09 68.9 8.9 90 45-151 289-399 (432)
214 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00012 2.5E-09 66.1 7.6 107 36-150 33-185 (311)
215 PRK01544 bifunctional N5-gluta 97.7 9.5E-05 2.1E-09 71.4 7.2 91 49-149 347-463 (506)
216 COG0030 KsgA Dimethyladenosine 97.7 0.00034 7.3E-09 61.8 10.0 72 38-121 19-107 (259)
217 KOG1663|consensus 97.6 0.00018 3.9E-09 62.1 7.4 91 46-150 70-185 (237)
218 PRK11727 23S rRNA mA1618 methy 97.6 0.00023 4.9E-09 64.9 8.2 60 49-117 114-198 (321)
219 KOG1269|consensus 97.6 8.4E-05 1.8E-09 68.8 5.2 91 45-148 106-215 (364)
220 PRK00536 speE spermidine synth 97.6 0.00029 6.2E-09 62.5 8.3 85 48-153 71-176 (262)
221 PF01269 Fibrillarin: Fibrilla 97.6 0.00053 1.1E-08 59.1 9.5 102 35-150 56-180 (229)
222 COG0500 SmtA SAM-dependent met 97.6 0.0014 3.1E-08 49.3 11.0 83 53-150 52-157 (257)
223 KOG1709|consensus 97.6 0.00043 9.3E-09 59.4 8.6 90 47-149 99-207 (271)
224 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.0004 8.6E-09 69.7 9.8 114 34-149 174-348 (702)
225 KOG0820|consensus 97.6 0.00031 6.6E-09 62.2 7.7 70 35-116 44-131 (315)
226 KOG4589|consensus 97.5 0.00031 6.8E-09 59.0 7.3 94 45-148 65-184 (232)
227 COG2520 Predicted methyltransf 97.5 0.0004 8.6E-09 63.7 7.4 87 47-150 186-291 (341)
228 PTZ00357 methyltransferase; Pr 97.4 0.00052 1.1E-08 67.5 7.8 103 51-161 702-855 (1072)
229 KOG2915|consensus 97.3 0.00093 2E-08 59.1 8.2 92 41-150 97-212 (314)
230 PF13578 Methyltransf_24: Meth 97.3 0.00019 4.1E-09 54.2 3.4 85 54-148 1-105 (106)
231 PF05958 tRNA_U5-meth_tr: tRNA 97.3 0.0014 2.9E-08 60.6 9.1 86 45-150 193-312 (352)
232 PF09243 Rsm22: Mitochondrial 97.3 0.0019 4.1E-08 57.6 9.6 93 46-149 30-140 (274)
233 PF04989 CmcI: Cephalosporin h 97.3 0.0014 3.1E-08 56.0 8.3 110 27-150 14-149 (206)
234 COG0116 Predicted N6-adenine-s 97.3 0.002 4.4E-08 59.7 9.7 107 34-150 176-346 (381)
235 TIGR03439 methyl_EasF probable 97.2 0.0027 5.8E-08 58.0 10.1 94 46-148 73-197 (319)
236 PF09445 Methyltransf_15: RNA 97.2 0.00033 7.2E-09 57.8 3.4 56 51-117 1-78 (163)
237 TIGR02987 met_A_Alw26 type II 97.2 0.0012 2.6E-08 64.0 7.7 27 132-158 180-206 (524)
238 COG0144 Sun tRNA and rRNA cyto 97.1 0.0057 1.2E-07 56.6 10.9 101 45-153 152-293 (355)
239 PF00398 RrnaAD: Ribosomal RNA 97.1 0.0015 3.2E-08 57.7 6.7 65 41-116 22-105 (262)
240 KOG3987|consensus 96.9 0.00025 5.5E-09 60.5 0.3 99 34-148 95-207 (288)
241 PF04672 Methyltransf_19: S-ad 96.9 0.0076 1.6E-07 53.5 9.6 91 51-150 70-192 (267)
242 KOG3201|consensus 96.9 0.0003 6.6E-09 57.8 0.7 105 34-150 14-142 (201)
243 COG1889 NOP1 Fibrillarin-like 96.9 0.012 2.5E-07 50.2 10.1 102 35-150 59-182 (231)
244 KOG2187|consensus 96.9 0.0068 1.5E-07 58.0 9.4 101 34-150 368-492 (534)
245 PF03141 Methyltransf_29: Puta 96.8 0.0037 8.1E-08 59.6 7.4 45 106-150 425-469 (506)
246 PRK10742 putative methyltransf 96.8 0.0037 8E-08 54.9 6.8 71 34-119 75-175 (250)
247 PF04816 DUF633: Family of unk 96.7 0.0099 2.2E-07 50.9 8.7 82 53-149 1-102 (205)
248 COG5459 Predicted rRNA methyla 96.7 0.0031 6.6E-08 57.8 5.8 43 107-149 184-226 (484)
249 PF13679 Methyltransf_32: Meth 96.7 0.015 3.3E-07 46.4 9.0 61 46-116 22-107 (141)
250 PF03492 Methyltransf_7: SAM d 96.6 0.007 1.5E-07 55.6 7.6 104 46-150 13-185 (334)
251 COG4262 Predicted spermidine s 96.6 0.0096 2.1E-07 55.0 8.1 104 48-161 288-420 (508)
252 PLN02668 indole-3-acetate carb 96.5 0.033 7.1E-07 52.1 11.5 48 104-151 157-240 (386)
253 KOG2352|consensus 96.5 0.013 2.7E-07 55.9 8.5 93 47-149 45-162 (482)
254 PRK00050 16S rRNA m(4)C1402 me 96.5 0.005 1.1E-07 55.6 5.6 61 46-116 16-98 (296)
255 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.5 0.011 2.3E-07 53.1 7.7 100 46-153 82-224 (283)
256 KOG2798|consensus 96.4 0.015 3.2E-07 52.7 7.9 44 107-153 258-301 (369)
257 KOG2920|consensus 96.4 0.0033 7.2E-08 55.9 3.8 36 45-90 112-147 (282)
258 COG4798 Predicted methyltransf 96.4 0.008 1.7E-07 50.9 5.7 96 45-150 44-168 (238)
259 PF03059 NAS: Nicotianamine sy 96.3 0.035 7.6E-07 49.6 9.6 91 49-150 120-232 (276)
260 KOG2793|consensus 96.0 0.023 5E-07 50.0 6.9 88 49-149 86-200 (248)
261 KOG1596|consensus 95.9 0.037 7.9E-07 48.5 7.8 98 45-156 152-269 (317)
262 KOG2730|consensus 95.8 0.0034 7.5E-08 54.1 0.8 83 49-145 94-199 (263)
263 COG4627 Uncharacterized protei 95.6 0.0042 9.1E-08 50.8 0.6 58 93-151 31-89 (185)
264 PF07091 FmrO: Ribosomal RNA m 95.5 0.06 1.3E-06 47.3 7.4 66 46-121 102-184 (251)
265 PF06859 Bin3: Bicoid-interact 95.4 0.0074 1.6E-07 46.4 1.5 42 108-149 1-45 (110)
266 KOG1099|consensus 95.4 0.03 6.5E-07 48.7 5.2 93 46-148 37-163 (294)
267 KOG3115|consensus 95.4 0.028 6.2E-07 48.0 4.8 21 128-148 163-183 (249)
268 PF01861 DUF43: Protein of unk 95.3 0.26 5.6E-06 43.1 10.7 102 34-150 29-151 (243)
269 TIGR01444 fkbM_fam methyltrans 95.0 0.037 8.1E-07 43.5 4.4 29 52-90 1-30 (143)
270 KOG2671|consensus 94.9 0.04 8.6E-07 50.5 4.8 99 41-150 200-356 (421)
271 PF03269 DUF268: Caenorhabditi 94.8 0.068 1.5E-06 44.0 5.4 91 50-150 2-113 (177)
272 KOG1122|consensus 94.4 0.23 5.1E-06 46.7 8.5 98 46-151 238-374 (460)
273 COG1255 Uncharacterized protei 94.2 0.38 8.2E-06 37.4 7.9 85 49-149 13-105 (129)
274 PF06460 NSP13: Coronavirus NS 94.1 0.34 7.3E-06 42.9 8.5 111 30-148 41-169 (299)
275 COG3510 CmcI Cephalosporin hyd 94.0 0.71 1.5E-05 39.3 9.9 116 27-155 51-187 (237)
276 PF05711 TylF: Macrocin-O-meth 94.0 0.56 1.2E-05 41.3 9.7 110 30-150 55-214 (248)
277 PF04445 SAM_MT: Putative SAM- 93.8 0.1 2.3E-06 45.5 4.9 63 46-119 70-162 (234)
278 PF02005 TRM: N2,N2-dimethylgu 93.4 0.24 5.2E-06 46.3 6.9 115 11-149 18-155 (377)
279 COG2384 Predicted SAM-dependen 93.4 1.2 2.7E-05 38.4 10.6 84 48-146 15-118 (226)
280 PF06962 rRNA_methylase: Putat 93.3 0.25 5.4E-06 39.8 5.9 60 91-152 26-96 (140)
281 KOG4058|consensus 93.2 0.32 7E-06 39.7 6.4 87 45-148 68-172 (199)
282 PF07757 AdoMet_MTase: Predict 93.2 0.16 3.5E-06 39.0 4.3 31 49-90 58-88 (112)
283 PF11599 AviRa: RRNA methyltra 93.1 0.82 1.8E-05 39.6 8.9 57 92-148 146-214 (246)
284 KOG2198|consensus 93.1 0.58 1.3E-05 43.4 8.6 99 45-151 151-299 (375)
285 PF05971 Methyltransf_10: Prot 92.2 0.92 2E-05 41.1 8.6 58 50-117 103-186 (299)
286 PF11312 DUF3115: Protein of u 92.2 0.12 2.6E-06 46.9 2.9 57 92-148 176-242 (315)
287 cd00315 Cyt_C5_DNA_methylase C 92.0 0.54 1.2E-05 41.8 6.9 55 52-116 2-70 (275)
288 PHA01634 hypothetical protein 91.9 0.21 4.5E-06 39.8 3.6 34 47-90 26-59 (156)
289 COG1064 AdhP Zn-dependent alco 91.5 0.79 1.7E-05 42.2 7.5 85 45-150 162-261 (339)
290 KOG1562|consensus 91.2 0.45 9.8E-06 43.0 5.4 94 47-150 119-238 (337)
291 PF12692 Methyltransf_17: S-ad 90.8 0.82 1.8E-05 37.2 6.1 91 50-149 29-135 (160)
292 KOG3924|consensus 90.5 0.59 1.3E-05 43.7 5.7 92 45-149 188-309 (419)
293 COG0286 HsdM Type I restrictio 90.2 1.5 3.2E-05 42.5 8.5 106 36-147 173-325 (489)
294 TIGR00006 S-adenosyl-methyltra 90.2 0.59 1.3E-05 42.5 5.3 62 45-115 16-99 (305)
295 PRK11524 putative methyltransf 90.1 0.35 7.5E-06 43.2 3.8 57 92-148 8-80 (284)
296 TIGR00027 mthyl_TIGR00027 meth 89.3 2.1 4.6E-05 37.8 8.1 89 51-150 83-199 (260)
297 KOG1098|consensus 89.1 0.8 1.7E-05 45.2 5.6 93 45-147 40-157 (780)
298 PF03686 UPF0146: Uncharacteri 88.7 1.8 4E-05 34.1 6.5 81 49-145 13-101 (127)
299 PRK09424 pntA NAD(P) transhydr 87.9 1.7 3.7E-05 42.3 7.1 91 47-149 162-286 (509)
300 PF05206 TRM13: Methyltransfer 87.0 6.6 0.00014 34.8 9.8 60 37-106 6-88 (259)
301 cd08283 FDH_like_1 Glutathione 86.9 1.7 3.8E-05 40.1 6.4 94 45-148 180-306 (386)
302 PF00145 DNA_methylase: C-5 cy 86.8 1.3 2.9E-05 39.3 5.4 53 52-115 2-68 (335)
303 PRK11524 putative methyltransf 86.4 1.3 2.7E-05 39.6 5.0 35 45-90 204-238 (284)
304 PF01555 N6_N4_Mtase: DNA meth 86.3 0.9 2E-05 38.0 3.8 34 46-90 188-221 (231)
305 COG2933 Predicted SAM-dependen 84.9 2.6 5.7E-05 37.7 6.0 62 45-117 207-279 (358)
306 TIGR00675 dcm DNA-methyltransf 84.5 2.4 5.2E-05 38.5 5.9 52 53-115 1-66 (315)
307 PF10354 DUF2431: Domain of un 84.5 3.1 6.6E-05 34.3 6.0 43 107-150 74-127 (166)
308 PRK13699 putative methylase; P 84.4 1.2 2.6E-05 38.6 3.7 55 93-147 2-71 (227)
309 KOG1227|consensus 84.0 0.29 6.3E-06 44.2 -0.3 82 48-146 193-294 (351)
310 PRK01747 mnmC bifunctional tRN 83.9 2.2 4.7E-05 42.7 5.8 55 93-148 149-206 (662)
311 PF10237 N6-adenineMlase: Prob 83.4 18 0.00038 29.8 10.0 100 35-150 13-125 (162)
312 KOG1253|consensus 83.2 0.35 7.6E-06 46.4 -0.1 86 48-150 108-218 (525)
313 PRK13699 putative methylase; P 82.3 3 6.6E-05 36.1 5.4 34 46-90 160-193 (227)
314 KOG0024|consensus 81.6 7.6 0.00017 35.7 7.8 87 45-150 165-275 (354)
315 COG1867 TRM1 N2,N2-dimethylgua 80.8 3.5 7.6E-05 38.4 5.4 83 50-149 53-155 (380)
316 COG0270 Dcm Site-specific DNA 78.9 5.2 0.00011 36.4 6.0 57 50-116 3-75 (328)
317 COG0686 Ald Alanine dehydrogen 77.7 4.4 9.5E-05 37.1 4.9 83 51-145 169-265 (371)
318 KOG2539|consensus 77.5 2.8 6.1E-05 40.1 3.8 98 45-149 196-316 (491)
319 TIGR00561 pntA NAD(P) transhyd 74.7 6.7 0.00014 38.2 5.7 87 47-145 161-281 (511)
320 PF08484 Methyltransf_14: C-me 72.8 39 0.00085 27.6 9.1 82 48-148 66-159 (160)
321 PRK09880 L-idonate 5-dehydroge 72.1 11 0.00024 34.0 6.3 86 46-149 166-267 (343)
322 PF11899 DUF3419: Protein of u 71.6 4.5 9.8E-05 37.9 3.7 59 91-150 275-336 (380)
323 COG4301 Uncharacterized conser 71.3 30 0.00064 30.9 8.3 93 46-149 75-194 (321)
324 COG1568 Predicted methyltransf 71.2 13 0.00028 33.6 6.1 90 44-148 147-260 (354)
325 COG3315 O-Methyltransferase in 71.1 18 0.00039 32.7 7.3 89 50-149 93-210 (297)
326 COG3129 Predicted SAM-dependen 69.9 17 0.00038 32.0 6.5 15 49-63 78-92 (292)
327 KOG2651|consensus 69.1 7.1 0.00015 36.7 4.2 35 46-90 150-184 (476)
328 PRK10458 DNA cytosine methylas 67.6 42 0.00091 32.4 9.4 45 50-104 88-147 (467)
329 TIGR02354 thiF_fam2 thiamine b 67.3 24 0.00051 29.8 6.9 34 49-90 20-53 (200)
330 cd00401 AdoHcyase S-adenosyl-L 67.2 17 0.00037 34.4 6.6 83 46-148 198-289 (413)
331 cd01842 SGNH_hydrolase_like_5 65.4 15 0.00033 30.8 5.2 45 107-151 49-102 (183)
332 COG1063 Tdh Threonine dehydrog 65.0 39 0.00085 30.9 8.4 87 46-150 165-271 (350)
333 cd08254 hydroxyacyl_CoA_DH 6-h 64.1 54 0.0012 28.8 9.0 84 45-148 161-263 (338)
334 PF05430 Methyltransf_30: S-ad 63.7 3.8 8.3E-05 32.1 1.3 57 92-149 32-91 (124)
335 PRK05225 ketol-acid reductoiso 63.6 9.6 0.00021 36.7 4.1 37 107-149 96-132 (487)
336 PF06016 Reovirus_L2: Reovirus 63.3 20 0.00044 38.4 6.7 89 48-148 821-927 (1289)
337 TIGR03693 ocin_ThiF_like putat 63.0 34 0.00074 34.2 7.8 34 49-90 128-161 (637)
338 cd08237 ribitol-5-phosphate_DH 61.7 18 0.0004 32.6 5.6 88 47-148 161-256 (341)
339 cd05188 MDR Medium chain reduc 61.6 64 0.0014 27.0 8.7 85 45-149 130-233 (271)
340 PF01795 Methyltransf_5: MraW 61.2 15 0.00033 33.5 4.8 49 46-103 17-81 (310)
341 PF01558 POR: Pyruvate ferredo 61.1 31 0.00066 28.0 6.3 33 107-150 56-88 (173)
342 PRK07411 hypothetical protein; 60.7 33 0.00072 32.1 7.2 34 49-90 37-70 (390)
343 PF04072 LCM: Leucine carboxyl 60.5 11 0.00023 31.3 3.4 73 51-134 80-182 (183)
344 PRK06701 short chain dehydroge 59.2 32 0.0007 30.3 6.6 95 47-149 43-182 (290)
345 PF03721 UDPG_MGDP_dh_N: UDP-g 59.2 25 0.00053 29.3 5.5 86 52-149 2-121 (185)
346 PF01210 NAD_Gly3P_dh_N: NAD-d 59.2 23 0.0005 28.4 5.2 82 52-151 1-106 (157)
347 TIGR02356 adenyl_thiF thiazole 56.3 30 0.00065 29.1 5.6 35 48-90 19-53 (202)
348 cd00757 ThiF_MoeB_HesA_family 56.3 27 0.0006 29.9 5.5 34 49-90 20-53 (228)
349 COG0604 Qor NADPH:quinone redu 56.2 32 0.0007 31.3 6.2 88 44-150 137-243 (326)
350 PRK05476 S-adenosyl-L-homocyst 56.1 47 0.001 31.7 7.3 82 47-148 209-299 (425)
351 KOG2015|consensus 55.1 34 0.00074 31.6 5.9 24 91-114 110-135 (422)
352 COG0275 Predicted S-adenosylme 54.9 37 0.0008 30.9 6.1 65 41-114 15-102 (314)
353 PRK05690 molybdopterin biosynt 54.7 32 0.00069 30.0 5.6 34 49-90 31-64 (245)
354 PRK07878 molybdopterin biosynt 54.5 28 0.0006 32.6 5.6 34 49-90 41-74 (392)
355 PRK05786 fabG 3-ketoacyl-(acyl 54.3 43 0.00094 27.9 6.3 93 49-149 4-136 (238)
356 PRK06274 indolepyruvate oxidor 53.6 41 0.00089 28.0 6.0 33 107-150 66-98 (197)
357 PF02254 TrkA_N: TrkA-N domain 53.3 53 0.0011 24.3 6.1 69 74-149 14-97 (116)
358 PF08468 MTS_N: Methyltransfer 52.8 18 0.00039 29.5 3.5 93 40-149 3-106 (155)
359 PRK12921 2-dehydropantoate 2-r 52.6 82 0.0018 27.7 8.1 81 52-147 2-101 (305)
360 PRK09489 rsmC 16S ribosomal RN 52.4 51 0.0011 30.3 6.8 39 107-149 75-113 (342)
361 cd01488 Uba3_RUB Ubiquitin act 52.1 24 0.00052 31.8 4.5 31 52-90 1-31 (291)
362 PLN02494 adenosylhomocysteinas 51.7 37 0.0008 32.9 5.9 85 47-148 251-341 (477)
363 PRK05597 molybdopterin biosynt 51.3 36 0.00078 31.4 5.7 34 49-90 27-60 (355)
364 TIGR00936 ahcY adenosylhomocys 51.0 57 0.0012 30.9 7.0 82 47-148 192-282 (406)
365 cd01489 Uba2_SUMO Ubiquitin ac 50.9 50 0.0011 30.1 6.4 31 52-90 1-31 (312)
366 TIGR01202 bchC 2-desacetyl-2-h 50.4 40 0.00088 29.9 5.8 82 48-148 143-231 (308)
367 PRK08223 hypothetical protein; 49.9 26 0.00057 31.6 4.4 34 49-90 26-59 (287)
368 TIGR03451 mycoS_dep_FDH mycoth 49.7 74 0.0016 28.8 7.5 87 45-149 172-277 (358)
369 cd08281 liver_ADH_like1 Zinc-d 49.7 63 0.0014 29.4 7.0 86 45-148 187-290 (371)
370 cd01492 Aos1_SUMO Ubiquitin ac 49.5 29 0.00064 29.1 4.5 34 49-90 20-53 (197)
371 PRK08306 dipicolinate synthase 49.4 55 0.0012 29.3 6.5 82 46-147 148-240 (296)
372 TIGR02355 moeB molybdopterin s 49.2 41 0.00088 29.3 5.4 34 49-90 23-56 (240)
373 PRK06522 2-dehydropantoate 2-r 49.1 97 0.0021 27.1 8.0 82 52-148 2-100 (304)
374 TIGR02822 adh_fam_2 zinc-bindi 47.4 95 0.0021 27.8 7.8 85 45-149 161-255 (329)
375 cd01483 E1_enzyme_family Super 46.8 56 0.0012 25.5 5.5 31 52-90 1-31 (143)
376 PF02558 ApbA: Ketopantoate re 46.2 90 0.0019 24.2 6.6 38 107-150 66-103 (151)
377 PRK10867 signal recognition pa 46.1 1.3E+02 0.0029 28.7 8.7 42 107-149 182-223 (433)
378 TIGR03366 HpnZ_proposed putati 45.9 82 0.0018 27.4 6.9 85 47-148 118-218 (280)
379 KOG2013|consensus 45.7 28 0.00061 33.8 4.0 57 49-114 11-109 (603)
380 COG0541 Ffh Signal recognition 45.3 44 0.00096 32.0 5.2 97 48-149 98-222 (451)
381 PRK05600 thiamine biosynthesis 45.3 47 0.001 30.9 5.5 35 48-90 39-73 (370)
382 COG0059 IlvC Ketol-acid reduct 45.0 39 0.00084 30.9 4.6 88 47-149 15-110 (338)
383 PRK05708 2-dehydropantoate 2-r 45.0 1.5E+02 0.0031 26.6 8.5 83 51-148 3-104 (305)
384 PRK08338 2-oxoglutarate ferred 44.3 1.3E+02 0.0028 24.5 7.4 32 107-149 63-94 (170)
385 PRK12475 thiamine/molybdopteri 44.2 58 0.0012 29.9 5.8 35 48-90 22-56 (338)
386 TIGR03334 IOR_beta indolepyruv 43.7 1.1E+02 0.0025 25.2 7.1 32 107-149 63-94 (189)
387 cd00755 YgdL_like Family of ac 43.4 71 0.0015 27.7 6.0 34 49-90 10-43 (231)
388 cd08239 THR_DH_like L-threonin 43.3 48 0.001 29.5 5.1 87 45-148 159-262 (339)
389 PTZ00075 Adenosylhomocysteinas 42.9 84 0.0018 30.5 6.8 85 46-148 250-341 (476)
390 COG0863 DNA modification methy 42.4 53 0.0012 28.7 5.2 34 46-90 219-252 (302)
391 cd08230 glucose_DH Glucose deh 41.7 75 0.0016 28.6 6.2 81 47-148 170-269 (355)
392 PRK08265 short chain dehydroge 41.0 1.1E+02 0.0023 26.2 6.8 60 48-115 4-87 (261)
393 PRK12549 shikimate 5-dehydroge 40.4 45 0.00097 29.8 4.4 46 37-90 114-159 (284)
394 cd01484 E1-2_like Ubiquitin ac 40.2 1E+02 0.0022 26.8 6.4 30 52-90 1-31 (234)
395 PF01555 N6_N4_Mtase: DNA meth 39.8 18 0.00038 30.0 1.6 27 126-152 34-60 (231)
396 TIGR00006 S-adenosyl-methyltra 39.7 25 0.00053 32.0 2.6 27 126-152 218-244 (305)
397 PF12242 Eno-Rase_NADH_b: NAD( 39.7 1.1E+02 0.0023 22.1 5.3 18 45-62 34-51 (78)
398 PRK10309 galactitol-1-phosphat 39.6 1.2E+02 0.0027 27.0 7.3 87 45-148 156-260 (347)
399 KOG2918|consensus 39.5 1.3E+02 0.0028 27.7 7.0 56 91-148 160-226 (335)
400 PF07279 DUF1442: Protein of u 39.3 2.6E+02 0.0055 24.3 8.6 99 33-150 28-150 (218)
401 PRK06128 oxidoreductase; Provi 39.0 1.5E+02 0.0032 26.0 7.6 94 48-149 53-192 (300)
402 PRK12480 D-lactate dehydrogena 38.7 74 0.0016 29.1 5.6 86 48-148 144-234 (330)
403 PRK11064 wecC UDP-N-acetyl-D-m 38.7 1.3E+02 0.0029 28.3 7.5 90 51-149 4-120 (415)
404 PF14740 DUF4471: Domain of un 38.7 21 0.00046 32.2 2.0 51 91-150 200-256 (289)
405 cd01487 E1_ThiF_like E1_ThiF_l 38.5 51 0.0011 27.1 4.1 31 52-90 1-31 (174)
406 PRK08644 thiamine biosynthesis 38.3 97 0.0021 26.3 6.0 34 49-90 27-60 (212)
407 PF01488 Shikimate_DH: Shikima 38.2 43 0.00093 26.1 3.5 63 47-117 9-84 (135)
408 PF02636 Methyltransf_28: Puta 38.0 45 0.00097 29.0 3.9 14 50-65 19-32 (252)
409 PRK08534 pyruvate ferredoxin o 37.8 1.4E+02 0.0031 24.5 6.8 32 107-148 65-97 (181)
410 PRK06249 2-dehydropantoate 2-r 37.7 1.5E+02 0.0032 26.5 7.4 37 107-149 71-107 (313)
411 COG4121 Uncharacterized conser 37.3 97 0.0021 27.4 5.9 56 92-148 147-208 (252)
412 PRK06398 aldose dehydrogenase; 37.1 1.4E+02 0.0031 25.4 7.0 61 48-116 4-80 (258)
413 COG0275 Predicted S-adenosylme 37.0 29 0.00063 31.6 2.6 26 125-150 221-246 (314)
414 PRK06853 indolepyruvate oxidor 36.9 1.2E+02 0.0026 25.2 6.3 33 107-150 67-99 (197)
415 PRK08324 short chain dehydroge 36.8 1E+02 0.0022 31.0 6.8 61 48-116 420-506 (681)
416 TIGR00518 alaDH alanine dehydr 36.7 36 0.00079 31.6 3.3 33 49-90 166-198 (370)
417 TIGR00497 hsdM type I restrict 36.6 1.6E+02 0.0035 28.4 7.9 16 49-64 217-232 (501)
418 PLN02353 probable UDP-glucose 36.1 1.6E+02 0.0036 28.4 7.8 91 51-149 2-128 (473)
419 COG0677 WecC UDP-N-acetyl-D-ma 36.1 1.2E+02 0.0026 28.9 6.5 91 51-150 10-130 (436)
420 PRK12937 short chain dehydroge 35.9 1.9E+02 0.004 24.0 7.4 93 49-149 4-140 (245)
421 PRK07806 short chain dehydroge 35.9 1.7E+02 0.0036 24.5 7.1 93 48-148 4-134 (248)
422 PRK08762 molybdopterin biosynt 35.7 86 0.0019 29.0 5.7 35 48-90 133-167 (376)
423 TIGR02825 B4_12hDH leukotriene 35.6 2.5E+02 0.0055 24.7 8.6 86 44-148 133-237 (325)
424 PF07101 DUF1363: Protein of u 35.5 15 0.00032 27.7 0.4 9 53-61 6-14 (124)
425 PRK00050 16S rRNA m(4)C1402 me 35.4 32 0.00069 31.1 2.6 27 126-152 214-240 (296)
426 cd08232 idonate-5-DH L-idonate 34.7 1.4E+02 0.003 26.4 6.7 81 49-148 165-262 (339)
427 KOG1209|consensus 34.4 2.4E+02 0.0052 24.8 7.6 59 49-114 6-87 (289)
428 COG2910 Putative NADH-flavin r 34.4 2.1E+02 0.0046 24.5 7.1 42 74-116 17-70 (211)
429 COG3007 Uncharacterized paraqu 33.6 87 0.0019 28.7 5.0 18 47-64 38-55 (398)
430 COG1893 ApbA Ketopantoate redu 33.5 1.9E+02 0.004 26.2 7.3 83 51-148 1-101 (307)
431 PF00106 adh_short: short chai 33.1 1.6E+02 0.0034 22.9 6.1 58 52-116 2-88 (167)
432 PRK08229 2-dehydropantoate 2-r 33.0 1.9E+02 0.0041 25.9 7.4 82 51-147 3-106 (341)
433 PF01795 Methyltransf_5: MraW 32.4 26 0.00056 32.0 1.5 25 126-150 219-243 (310)
434 PRK07502 cyclohexadienyl dehyd 32.4 1.6E+02 0.0034 26.3 6.6 79 51-145 7-97 (307)
435 PRK07985 oxidoreductase; Provi 32.2 1.5E+02 0.0034 25.9 6.5 93 48-148 47-185 (294)
436 cd08294 leukotriene_B4_DH_like 31.8 2.7E+02 0.0058 24.3 8.1 85 45-148 139-241 (329)
437 PRK08220 2,3-dihydroxybenzoate 31.7 1.3E+02 0.0028 25.2 5.8 61 48-116 6-84 (252)
438 PRK07877 hypothetical protein; 31.7 1.1E+02 0.0024 31.3 6.0 34 48-90 105-139 (722)
439 PRK14851 hypothetical protein; 31.2 1.1E+02 0.0025 30.9 6.0 34 48-90 41-75 (679)
440 KOG3851|consensus 31.1 81 0.0018 29.4 4.4 35 48-90 37-72 (446)
441 TIGR01381 E1_like_apg7 E1-like 30.8 51 0.0011 33.2 3.4 34 49-90 337-370 (664)
442 KOG0022|consensus 30.7 77 0.0017 29.3 4.2 38 45-90 188-225 (375)
443 COG1748 LYS9 Saccharopine dehy 30.4 1.2E+02 0.0026 28.6 5.6 56 51-114 2-74 (389)
444 KOG2352|consensus 30.3 58 0.0013 31.5 3.6 92 48-148 294-416 (482)
445 PRK14852 hypothetical protein; 30.0 1.2E+02 0.0026 32.2 6.0 34 48-90 330-364 (989)
446 PRK14029 pyruvate/ketoisovaler 29.7 2.8E+02 0.0061 22.8 7.3 34 107-149 65-98 (185)
447 cd08293 PTGR2 Prostaglandin re 29.6 3.4E+02 0.0074 23.9 8.4 32 107-148 223-254 (345)
448 PRK07576 short chain dehydroge 29.5 1.7E+02 0.0037 25.0 6.2 60 48-115 7-93 (264)
449 PRK09072 short chain dehydroge 29.4 1.7E+02 0.0038 24.8 6.2 60 49-116 4-88 (263)
450 cd05278 FDH_like Formaldehyde 29.2 1.1E+02 0.0023 27.2 5.0 33 107-148 235-267 (347)
451 cd08285 NADP_ADH NADP(H)-depen 28.8 1.8E+02 0.004 25.9 6.5 87 45-148 162-266 (351)
452 PF02737 3HCDH_N: 3-hydroxyacy 28.2 3.3E+02 0.0072 22.2 7.9 82 52-150 1-116 (180)
453 PF07991 IlvN: Acetohydroxy ac 27.9 54 0.0012 27.1 2.6 87 49-149 3-96 (165)
454 TIGR02175 PorC_KorC 2-oxoacid: 27.5 2.4E+02 0.0052 23.0 6.5 31 107-148 65-97 (177)
455 KOG2811|consensus 27.2 1.7E+02 0.0038 27.5 5.9 45 51-105 184-248 (420)
456 PRK12742 oxidoreductase; Provi 27.1 2E+02 0.0042 23.8 6.0 61 48-116 4-83 (237)
457 cd08231 MDR_TM0436_like Hypoth 26.8 4.6E+02 0.0099 23.4 9.1 33 107-148 248-280 (361)
458 cd08234 threonine_DH_like L-th 26.5 3.1E+02 0.0066 24.0 7.5 86 45-148 155-257 (334)
459 PF00899 ThiF: ThiF family; I 26.5 54 0.0012 25.3 2.3 33 50-90 2-34 (135)
460 cd08238 sorbose_phosphate_red 25.5 4.6E+02 0.01 24.2 8.8 36 45-90 171-211 (410)
461 TIGR01408 Ube1 ubiquitin-activ 25.0 2.8E+02 0.0061 29.6 7.8 33 50-90 24-56 (1008)
462 PRK15469 ghrA bifunctional gly 24.8 2.4E+02 0.0051 25.6 6.4 87 47-147 133-225 (312)
463 COG0552 FtsY Signal recognitio 24.7 2.3E+02 0.005 26.2 6.2 87 50-142 139-254 (340)
464 COG5379 BtaA S-adenosylmethion 24.7 1E+02 0.0022 28.3 3.8 59 91-150 307-368 (414)
465 cd05191 NAD_bind_amino_acid_DH 24.3 2.4E+02 0.0053 19.8 5.3 36 46-89 19-54 (86)
466 PRK14106 murD UDP-N-acetylmura 24.2 1.4E+02 0.0031 27.9 5.1 58 49-116 4-76 (450)
467 PRK05562 precorrin-2 dehydroge 24.1 2.8E+02 0.0062 23.9 6.5 57 48-114 23-91 (223)
468 PF00107 ADH_zinc_N: Zinc-bind 23.9 1.7E+02 0.0038 21.7 4.7 35 107-150 57-91 (130)
469 PRK06153 hypothetical protein; 23.7 90 0.0019 29.5 3.5 34 49-90 175-208 (393)
470 PRK07530 3-hydroxybutyryl-CoA 23.4 4E+02 0.0086 23.4 7.6 82 51-148 5-119 (292)
471 PTZ00082 L-lactate dehydrogena 23.4 3.1E+02 0.0068 24.8 7.0 32 51-90 7-38 (321)
472 PRK12939 short chain dehydroge 23.4 2.6E+02 0.0057 23.1 6.2 61 48-116 5-92 (250)
473 KOG0821|consensus 23.4 3.6E+02 0.0078 23.8 6.8 25 41-65 42-66 (326)
474 PF02826 2-Hacid_dh_C: D-isome 23.4 36 0.00078 27.9 0.8 88 45-147 31-126 (178)
475 PRK06484 short chain dehydroge 23.1 2.8E+02 0.006 26.4 6.9 60 49-116 268-351 (520)
476 COG0240 GpsA Glycerol-3-phosph 23.0 5.6E+02 0.012 23.6 8.4 104 51-170 2-125 (329)
477 PF11899 DUF3419: Protein of u 22.8 1.4E+02 0.0031 27.9 4.7 35 46-91 32-66 (380)
478 cd01491 Ube1_repeat1 Ubiquitin 22.7 1.4E+02 0.003 26.9 4.4 34 49-90 18-51 (286)
479 PRK08328 hypothetical protein; 22.7 80 0.0017 27.2 2.8 34 49-90 26-59 (231)
480 PRK07231 fabG 3-ketoacyl-(acyl 22.6 4.1E+02 0.0089 21.9 7.3 60 49-116 4-89 (251)
481 PRK05479 ketol-acid reductoiso 22.6 1.7E+02 0.0036 27.0 5.0 85 48-149 15-109 (330)
482 PRK08085 gluconate 5-dehydroge 22.3 2.7E+02 0.0058 23.4 6.1 61 48-116 7-94 (254)
483 cd08265 Zn_ADH3 Alcohol dehydr 22.2 5.5E+02 0.012 23.3 8.5 34 107-148 274-307 (384)
484 cd08278 benzyl_alcohol_DH Benz 22.2 1.5E+02 0.0033 26.8 4.8 86 45-148 182-285 (365)
485 PRK06079 enoyl-(acyl carrier p 22.2 4E+02 0.0086 22.5 7.1 61 48-116 5-91 (252)
486 PRK06719 precorrin-2 dehydroge 22.0 4.2E+02 0.0091 21.2 7.7 58 47-114 10-76 (157)
487 KOG4364|consensus 22.0 2.2E+02 0.0047 28.9 5.8 15 45-59 93-107 (811)
488 cd05213 NAD_bind_Glutamyl_tRNA 22.0 1.4E+02 0.0031 26.7 4.5 35 48-90 176-210 (311)
489 PRK06182 short chain dehydroge 21.9 2.8E+02 0.0061 23.6 6.2 59 50-116 3-82 (273)
490 PRK06500 short chain dehydroge 21.8 3.9E+02 0.0085 22.1 7.0 59 49-115 5-87 (249)
491 PRK08293 3-hydroxybutyryl-CoA 21.7 1.9E+02 0.0041 25.5 5.1 31 51-90 4-34 (287)
492 PF02086 MethyltransfD12: D12 21.6 75 0.0016 27.2 2.4 31 49-90 20-50 (260)
493 PRK05844 pyruvate flavodoxin o 21.2 3.9E+02 0.0085 21.9 6.7 31 108-148 66-97 (186)
494 PRK14028 pyruvate ferredoxin o 21.2 2.8E+02 0.0062 24.8 6.2 35 107-149 66-100 (312)
495 cd08279 Zn_ADH_class_III Class 21.1 2.3E+02 0.005 25.5 5.7 33 107-148 250-282 (363)
496 cd08245 CAD Cinnamyl alcohol d 21.1 5.1E+02 0.011 22.5 7.8 84 45-148 158-256 (330)
497 TIGR00745 apbA_panE 2-dehydrop 21.0 3.4E+02 0.0073 23.4 6.6 37 107-149 58-94 (293)
498 PLN02586 probable cinnamyl alc 21.0 4.1E+02 0.0089 24.0 7.4 19 130-148 260-278 (360)
499 PRK15001 SAM-dependent 23S rib 21.0 3.4E+02 0.0075 25.4 6.8 79 52-149 47-143 (378)
500 PRK13403 ketol-acid reductoiso 20.8 2E+02 0.0044 26.6 5.1 88 47-149 13-107 (335)
No 1
>KOG1499|consensus
Probab=99.93 E-value=3.6e-26 Score=205.00 Aligned_cols=169 Identities=44% Similarity=0.740 Sum_probs=158.3
Q ss_pred CChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEe
Q psy9773 9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAP 88 (252)
Q Consensus 9 ~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gv 88 (252)
.+.+.||.+|..+.+|..|++|.+|+.+|+.++..+.....+++|||+||||| ++ |++++++|+++|+|+
T Consensus 20 ~~~~~Yf~sY~~~~iheeML~D~VRt~aYr~~i~~n~~lf~dK~VlDVGcGtG--IL--------S~F~akAGA~~V~aV 89 (346)
T KOG1499|consen 20 TSDDYYFDSYAHFGIHEEMLKDSVRTLAYRNAILQNKHLFKDKTVLDVGCGTG--IL--------SMFAAKAGARKVYAV 89 (346)
T ss_pred chhhhhhhhhhchHHHHHHHhhhhhHHHHHHHHhcchhhcCCCEEEEcCCCcc--HH--------HHHHHHhCcceEEEE
Confidence 46788999999999999999999999999999999999999999999999999 99 999999999999999
Q ss_pred eC-----------------CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 89 QY-----------------LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 89 D~-----------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|. ..|+++++.+.++.+| .++|+|++.||++++..+..+..+|.+.-++|+|||+++++.+.
T Consensus 90 e~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~ 169 (346)
T KOG1499|consen 90 EASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRAT 169 (346)
T ss_pred echHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccce
Confidence 99 5689999999999888 99999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhH----HHHhhhhhCCccccchhHHhhhhhhh
Q psy9773 151 LHSAPSYSPEI----FKFWENIAGEEEKKEEDEIEEEENEE 187 (252)
Q Consensus 151 ~~~~~~~~~~~----~~~w~~~~g~~~~~~~~~~~~~~~~~ 187 (252)
.+.+++....+ ..+|.+++||+|+++.+....+|...
T Consensus 170 l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~ 210 (346)
T KOG1499|consen 170 LYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVD 210 (346)
T ss_pred EEEEeccCchhhhhhcCccccccccchhhhhhhhhccccee
Confidence 99988888766 56799999999999999988877655
No 2
>KOG1500|consensus
Probab=99.87 E-value=1e-21 Score=174.90 Aligned_cols=160 Identities=39% Similarity=0.635 Sum_probs=148.8
Q ss_pred CChhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEe
Q psy9773 9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAP 88 (252)
Q Consensus 9 ~~~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gv 88 (252)
.+...||..|+.+..+++|++|-+|+..|.+++..++..+.++.|||+|||+| ++ +++++..|+++|+++
T Consensus 137 sSA~~YF~~YG~L~~QQNMmQDYVRTgTY~~Ail~N~sDF~~kiVlDVGaGSG--IL--------S~FAaqAGA~~vYAv 206 (517)
T KOG1500|consen 137 SSASQYFQFYGYLSQQQNMMQDYVRTGTYQRAILENHSDFQDKIVLDVGAGSG--IL--------SFFAAQAGAKKVYAV 206 (517)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccCCcEEEEecCCcc--HH--------HHHHHHhCcceEEEE
Confidence 45667999999999999999999999999999999999999999999999999 99 999999999999999
Q ss_pred eC-----------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 89 QY-----------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 89 D~-----------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
+. .+|.++.+.+.++.+|++.|+||+.+|+..+.++..++..+... ++|+|.|.+++....+
T Consensus 207 EAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfPT~gdi 285 (517)
T KOG1500|consen 207 EASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFPTVGDI 285 (517)
T ss_pred ehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccCcccce
Confidence 98 79999999999999999999999999999999999999988876 9999999999999999
Q ss_pred ccCCCCChhH-------HHHh--hhhhCCccccchhH
Q psy9773 152 HSAPSYSPEI-------FKFW--ENIAGEEEKKEEDE 179 (252)
Q Consensus 152 ~~~~~~~~~~-------~~~w--~~~~g~~~~~~~~~ 179 (252)
+.+|+....+ ..+| .+++|.|+++++..
T Consensus 286 HlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~ 322 (517)
T KOG1500|consen 286 HLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGS 322 (517)
T ss_pred eecccchHHHHHHHHhhhhhhhhhccccccchhhhhh
Confidence 9999988665 6778 68899999988754
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.66 E-value=1e-15 Score=133.08 Aligned_cols=107 Identities=23% Similarity=0.292 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEE
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEV 95 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~ 95 (252)
-..|++.+.......+|.+||||||||| .+ +..+++ .|..+|+|+|+ .++.|
T Consensus 36 ~~~Wr~~~i~~~~~~~g~~vLDva~GTG--d~--------a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~f 105 (238)
T COG2226 36 HRLWRRALISLLGIKPGDKVLDVACGTG--DM--------ALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEF 105 (238)
T ss_pred hHHHHHHHHHhhCCCCCCEEEEecCCcc--HH--------HHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEE
Confidence 4556666666556669999999999999 55 666666 44468999999 33889
Q ss_pred EEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 96 IQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 96 ~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
+.+|+.++|++ ++||+|.+... +.+..++..+|++++|+|||||++++...+...
T Consensus 106 v~~dAe~LPf~D~sFD~vt~~fg---lrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 106 VVGDAENLPFPDNSFDAVTISFG---LRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred EEechhhCCCCCCccCEEEeeeh---hhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 99999999999 89999988555 555589999999999999999999988765443
No 4
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=8.4e-15 Score=111.93 Aligned_cols=90 Identities=21% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEEccc-cccCCCCc
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQNKI-ENVELPEK 108 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~~d~-~~~~~~~~ 108 (252)
|+.+|||||||+| .+ +..+++ .+..+++|+|+ .+++++++|+ ........
T Consensus 1 p~~~vLDlGcG~G--~~--------~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 70 (112)
T PF12847_consen 1 PGGRVLDLGCGTG--RL--------SIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEP 70 (112)
T ss_dssp TTCEEEEETTTTS--HH--------HHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSC
T ss_pred CCCEEEEEcCcCC--HH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCC
Confidence 5789999999999 66 666666 33467999999 7999999999 44455578
Q ss_pred eeEEEecc-cccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 109 VDIIVSEW-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 109 fDlIv~~~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
||+|++.. .++++.+..+...++..+.+.|+|||+|++..
T Consensus 71 ~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 71 FDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99999987 44444444678899999999999999999875
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.58 E-value=4e-15 Score=129.54 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=68.5
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEE
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQ 97 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~ 97 (252)
+++.+.......+|.+|||+||||| .+ +..+++. +. .+|+|+|+ .++.+++
T Consensus 35 wr~~~~~~~~~~~g~~vLDv~~GtG--~~--------~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~ 104 (233)
T PF01209_consen 35 WRRKLIKLLGLRPGDRVLDVACGTG--DV--------TRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQ 104 (233)
T ss_dssp --SHHHHHHT--S--EEEEET-TTS--HH--------HHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE
T ss_pred HHHHHHhccCCCCCCEEEEeCCChH--HH--------HHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEE
Confidence 3333333345678899999999999 66 6666553 33 48999999 4799999
Q ss_pred ccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 98 NKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 98 ~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|+.+++++ ++||+|++.+.++.+ +++..++++++|+|||||++++...+
T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~---~d~~~~l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNF---PDRERALREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp -BTTB--S-TT-EEEEEEES-GGG----SSHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cCHHHhcCCCCceeEEEHHhhHHhh---CCHHHHHHHHHHHcCCCeEEEEeecc
Confidence 999999998 899999996665544 67889999999999999999987654
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.54 E-value=7.9e-14 Score=123.28 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=79.6
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC--------------------CceE
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY--------------------LILE 94 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~--------------------~~i~ 94 (252)
+++.+.......++.+|||+||||| .+ +..+++. +. .+|+|+|+ .++.
T Consensus 61 ~r~~~~~~~~~~~~~~VLDlGcGtG--~~--------~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~ 130 (261)
T PLN02233 61 WKRMAVSWSGAKMGDRVLDLCCGSG--DL--------AFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIE 130 (261)
T ss_pred HHHHHHHHhCCCCCCEEEEECCcCC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeE
Confidence 4444443345677899999999999 55 5555553 33 47999999 1578
Q ss_pred EEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 95 VIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 95 ~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++++|+.+++++ ++||+|++..+++++ .++..++.++.|+|+|||+|++....
T Consensus 131 ~~~~d~~~lp~~~~sfD~V~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 131 WIEGDATDLPFDDCYFDAITMGYGLRNV---VDRLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred EEEcccccCCCCCCCEeEEEEecccccC---CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 999999999887 789999997776655 67889999999999999999988654
No 7
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=3.2e-14 Score=104.60 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=67.6
Q ss_pred EEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC-CceeEEEecccc
Q psy9773 54 LDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP-EKVDIIVSEWMG 118 (252)
Q Consensus 54 LDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~ 118 (252)
||+|||+| .. +..+++.+..+++++|+ .++.+.++|+.+++++ ++||+|++..++
T Consensus 1 LdiG~G~G--~~--------~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTG--RF--------AAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTS--HH--------HHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCC--HH--------HHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccce
Confidence 89999999 66 66677765578999999 4567999999999988 899999998887
Q ss_pred cccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773 119 FYLLHESMIDSVIFARDKFLKPEGVMYP 146 (252)
Q Consensus 119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~ 146 (252)
+++ .++..++.++.|+|||||++++
T Consensus 71 ~~~---~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHL---EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGS---SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eec---cCHHHHHHHHHHHcCcCeEEeC
Confidence 777 7899999999999999999986
No 8
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=3.3e-14 Score=122.47 Aligned_cols=89 Identities=24% Similarity=0.322 Sum_probs=76.0
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C--ceEEEEccccccCCC-Ccee
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L--ILEVIQNKIENVELP-EKVD 110 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~--~i~~~~~d~~~~~~~-~~fD 110 (252)
.+|.+|||+|||-| .| +..+|+.| .+|+|+|+ . .+.+.+..+.++... ++||
T Consensus 58 l~g~~vLDvGCGgG--~L--------se~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPGLRVLDVGCGGG--IL--------SEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCCCeEEEecCCcc--Hh--------hHHHHHCC-CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCcc
Confidence 68999999999999 99 99999999 57999999 2 344667777777655 7999
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|+|.-| +.|.+++..+++.+.+++||||++++++..
T Consensus 127 vV~cmEV---lEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 127 VVTCMEV---LEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EEEEhhH---HHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 9999766 455588889999999999999999999876
No 9
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.48 E-value=1.8e-13 Score=123.96 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=77.1
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIEN 102 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~ 102 (252)
+.......++++|||+|||+| .+ +..++..|+..|+|+|+ .++.+..+++.+
T Consensus 113 ~l~~l~~~~g~~VLDvGCG~G--~~--------~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 113 VLPHLSPLKGRTILDVGCGSG--YH--------MWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred HHHhcCCCCCCEEEEeccCCc--HH--------HHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 333335677899999999999 65 56666777778999997 246678888888
Q ss_pred cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 103 VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 103 ~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++...+||+|+|..+++|. .++..+|..++++|+|||.|++...
T Consensus 183 lp~~~~FD~V~s~gvL~H~---~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 183 LHELYAFDTVFSMGVLYHR---KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCCCCcCEEEEcchhhcc---CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 8766789999998876665 7788999999999999999998754
No 10
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=2.4e-13 Score=123.67 Aligned_cols=91 Identities=18% Similarity=0.067 Sum_probs=77.0
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPE 107 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~ 107 (252)
....+++|||||||+| .+ +..++..|+..|+|+|+ .++.++.+|+.+++.++
T Consensus 119 ~~l~g~~VLDIGCG~G--~~--------~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 119 SPLKGRTVLDVGCGNG--YH--------MWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred CCCCCCEEEEeccCCc--HH--------HHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 3457899999999999 66 67777778778999998 25889999999988778
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+||+|+|..+++|. .++..+|..+++.|+|||.|++...
T Consensus 189 ~FD~V~s~~vl~H~---~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 189 AFDTVFSMGVLYHR---RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CcCEEEECChhhcc---CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 89999997776554 6788999999999999999998753
No 11
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=2.2e-13 Score=123.80 Aligned_cols=89 Identities=16% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-Cc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-EK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~ 108 (252)
.++.+|||||||+| .+ +..+++.| .+|+|+|+ .++.++++++.+++.+ ++
T Consensus 130 ~~g~~ILDIGCG~G--~~--------s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~ 198 (322)
T PLN02396 130 FEGLKFIDIGCGGG--LL--------SEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRK 198 (322)
T ss_pred CCCCEEEEeeCCCC--HH--------HHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCC
Confidence 46779999999999 66 67777776 47999999 2688999999888765 78
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
||+|+|..+++|+ .++..++..+.++|+|||.+++....
T Consensus 199 FD~Vi~~~vLeHv---~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 199 FDAVLSLEVIEHV---ANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred CCEEEEhhHHHhc---CCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999997776666 67889999999999999999998754
No 12
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.47 E-value=5.1e-13 Score=115.18 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=78.5
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEE
Q psy9773 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVI 96 (252)
Q Consensus 36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~ 96 (252)
.++..+.......++.+|||+|||+| .+ +..+++. ++ .+++|+|+ .++.++
T Consensus 32 ~~~~~~l~~l~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~ 101 (231)
T TIGR02752 32 KWRKDTMKRMNVQAGTSALDVCCGTA--DW--------SIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELV 101 (231)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCcC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEE
Confidence 34444544456678899999999999 55 5555543 32 47999999 368899
Q ss_pred EccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 97 QNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 97 ~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++|+..++++ ++||+|++..+++++ +++..++..+.++|+|||++++....
T Consensus 102 ~~d~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 102 HGNAMELPFDDNSFDYVTIGFGLRNV---PDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred EechhcCCCCCCCccEEEEecccccC---CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 9999888766 789999987665444 67789999999999999999986643
No 13
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.46 E-value=3.7e-13 Score=118.19 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC----------CceEEEEccccccCCCCceeEEE
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY----------LILEVIQNKIENVELPEKVDIIV 113 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv 113 (252)
....++.+|||||||+| .+ +..++... ..+|+|+|+ .++.++++|+.++...++||+|+
T Consensus 25 l~~~~~~~vLDlGcG~G--~~--------~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 25 VGAERARRVVDLGCGPG--NL--------TRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred CCCCCCCEEEEEcCCCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEE
Confidence 45567899999999999 66 66666542 257999999 56889999998875448899999
Q ss_pred ecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++.+++++ +++..++.++.++|+|||+|++..+
T Consensus 95 ~~~~l~~~---~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 95 SNAALQWV---PEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred EehhhhhC---CCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 98887776 5778999999999999999998754
No 14
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.45 E-value=4.7e-13 Score=108.45 Aligned_cols=90 Identities=28% Similarity=0.314 Sum_probs=73.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHh-hcC-CCcEEEeeC-----------------CceEEEEccccccC--CC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVH-PLDHYAPQY-----------------LILEVIQNKIENVE--LP 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~ 106 (252)
..+.+|||+|||+| .+ +..++ ..+ ..+++|+|+ .+++|+++|+.+++ ++
T Consensus 2 ~~~~~iLDlGcG~G--~~--------~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~ 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTG--RL--------LIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE 71 (152)
T ss_dssp TTTSEEEEET-TTS--HH--------HHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS
T ss_pred CCCCEEEEecCcCc--HH--------HHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC
Confidence 45789999999999 55 55666 332 367999999 57999999999987 44
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.||+|++..+++++ .++..++..+.++|++||++++....
T Consensus 72 ~~~D~I~~~~~l~~~---~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 72 EKFDIIISNGVLHHF---PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TTEEEEEEESTGGGT---SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEEcCchhhc---cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 789999998776555 77889999999999999999998865
No 15
>PLN02244 tocopherol O-methyltransferase
Probab=99.44 E-value=1.1e-12 Score=120.29 Aligned_cols=89 Identities=13% Similarity=0.079 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-Cc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-EK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~ 108 (252)
.++.+|||||||+| .+ +..++.....+|+|+|+ .++.++++|+.+++++ ++
T Consensus 117 ~~~~~VLDiGCG~G--~~--------~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~ 186 (340)
T PLN02244 117 KRPKRIVDVGCGIG--GS--------SRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQ 186 (340)
T ss_pred CCCCeEEEecCCCC--HH--------HHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCC
Confidence 67789999999999 55 55666542357999999 3689999999998877 89
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||+|++..+++++ .+...++.++.++|+|||+|++...
T Consensus 187 FD~V~s~~~~~h~---~d~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 187 FDLVWSMESGEHM---PDKRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred ccEEEECCchhcc---CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999997776665 6788999999999999999998753
No 16
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.43 E-value=1.9e-12 Score=113.17 Aligned_cols=98 Identities=16% Similarity=0.163 Sum_probs=76.6
Q ss_pred HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC
Q psy9773 39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP 106 (252)
Q Consensus 39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~ 106 (252)
..+.......++.+|||+|||+| .+ +..++..+ .+++++|+ ....++++|+..++++
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G--~~--------~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPG--WM--------SRYWRERG-SQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCC--HH--------HHHHHHcC-CeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCC
Confidence 33333333446789999999999 66 66666665 57999999 2356889999998876
Q ss_pred -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++||+|+++.+++++ .++..+|.++.++|+|||+|+++...
T Consensus 101 ~~~fD~V~s~~~l~~~---~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 101 TATFDLAWSNLAVQWC---GNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CCcEEEEEECchhhhc---CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 789999997775554 67889999999999999999998653
No 17
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.43 E-value=2.1e-13 Score=109.99 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=73.1
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC-------ceEEEEccccccCCC-CceeEEEecccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMG 118 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~-------~i~~~~~d~~~~~~~-~~fDlIv~~~~~ 118 (252)
..++.+|||+|||+| .+ +..++..|. +++|+|+. .+.....+......+ ++||+|+|..++
T Consensus 20 ~~~~~~vLDiGcG~G--~~--------~~~l~~~~~-~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG--SF--------LRALAKRGF-EVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTTSEEEEESSTTS--HH--------HHHHHHTTS-EEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred cCCCCEEEEEcCCCC--HH--------HHHHHHhCC-EEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 678899999999999 66 667777775 89999993 344444444444333 899999998887
Q ss_pred cccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
+++ +++..+|..+.++|+|||++++..+..
T Consensus 89 ~~~---~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 89 EHL---PDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGS---SHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhc---ccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 777 679999999999999999999998763
No 18
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.43 E-value=7.9e-13 Score=112.12 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=72.5
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f 109 (252)
..++.+|||+|||+| .. +..+++.| .+|+|+|+ .++++...|+.+++++++|
T Consensus 28 ~~~~~~vLDiGcG~G--~~--------a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 28 VVKPGKTLDLGCGNG--RN--------SLYLAANG-FDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred cCCCCcEEEECCCCC--HH--------HHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 456789999999999 66 67777776 47999999 3478888998887767789
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
|+|++..+++++ +..+...++..+.++|+|||++++.
T Consensus 97 D~I~~~~~~~~~-~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 97 DFILSTVVLMFL-EAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CEEEEecchhhC-CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999998876655 3447889999999999999996543
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.42 E-value=1.6e-12 Score=114.03 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=77.2
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCCC
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELPE 107 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~~ 107 (252)
+.......++.+|||+|||+| .+ +..++.. +..+|+|+|+ .++.++.+|+..+..++
T Consensus 23 ll~~~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~ 92 (258)
T PRK01683 23 LLARVPLENPRYVVDLGCGPG--NS--------TELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQ 92 (258)
T ss_pred HHhhCCCcCCCEEEEEcccCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCC
Confidence 333345677899999999999 65 5565554 3368999999 46889999998776557
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+||+|+++.+++++ .+...++..+.++|+|||.+++..+.
T Consensus 93 ~fD~v~~~~~l~~~---~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 93 ALDLIFANASLQWL---PDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CccEEEEccChhhC---CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 99999998876666 56789999999999999999997543
No 20
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.41 E-value=1e-12 Score=124.16 Aligned_cols=124 Identities=38% Similarity=0.532 Sum_probs=94.6
Q ss_pred HhccHHHHHHHHHHHHhCC----CC----CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-----CCcEEEeeC---
Q psy9773 27 MLDDTVRNEAYRAAICDNP----NI----FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-----PLDHYAPQY--- 90 (252)
Q Consensus 27 ~l~~~~~~~~~~~~l~~~~----~~----~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-----~~~v~gvD~--- 90 (252)
.-+|+.++..|.++|.... .. ..+..|||||||+| .| +..+++++ +.+|+||+.
T Consensus 156 fE~D~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrG--pL--------~~~al~A~~~~~~a~~VyAVEkn~~ 225 (448)
T PF05185_consen 156 FEKDPVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRG--PL--------SMFALQAGARAGGAVKVYAVEKNPN 225 (448)
T ss_dssp HCC-HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTS--HH--------HHHHHHTTHHHCCESEEEEEESSTH
T ss_pred HhcCHHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCcc--HH--------HHHHHHHHHHhCCCeEEEEEcCCHh
Confidence 4467778888888775531 11 13678999999999 88 77666654 578999998
Q ss_pred ---------------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773 91 ---------------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155 (252)
Q Consensus 91 ---------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~ 155 (252)
++|+++++|++++..|.++|+||+.++++++.++- ...+|..+.+.|+|||+++++..+.|.+|
T Consensus 226 A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl-~pE~Lda~~rfLkp~Gi~IP~~~t~ylaP 304 (448)
T PF05185_consen 226 AVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNEL-SPECLDAADRFLKPDGIMIPSSYTSYLAP 304 (448)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTS-HHHHHHHGGGGEEEEEEEESSEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCcccccc-CHHHHHHHHhhcCCCCEEeCcchhhEEEE
Confidence 68999999999999999999999999998887774 55578899999999999999999999999
Q ss_pred CCChhH
Q psy9773 156 SYSPEI 161 (252)
Q Consensus 156 ~~~~~~ 161 (252)
+....+
T Consensus 305 iss~~l 310 (448)
T PF05185_consen 305 ISSPKL 310 (448)
T ss_dssp EE-HHH
T ss_pred eeCHHH
Confidence 998775
No 21
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=1.7e-12 Score=114.87 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC-Cc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP-EK 108 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~-~~ 108 (252)
..+.++.+|||||||+| .. +..++.....+|+|+|+ .++.+.++|+...+++ ++
T Consensus 48 l~l~~~~~VLDiGcG~G--~~--------a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~ 117 (263)
T PTZ00098 48 IELNENSKVLDIGSGLG--GG--------CKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT 117 (263)
T ss_pred CCCCCCCEEEEEcCCCC--hh--------hHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence 56788899999999999 44 44554432247999999 3688999999888776 78
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
||+|++..+++++. ..+...+|.++.++|+|||+|++....
T Consensus 118 FD~V~s~~~l~h~~-~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 118 FDMIYSRDAILHLS-YADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred eEEEEEhhhHHhCC-HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999966555542 237889999999999999999997653
No 22
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.40 E-value=1.3e-12 Score=110.68 Aligned_cols=89 Identities=22% Similarity=0.226 Sum_probs=69.9
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVD 110 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD 110 (252)
..++.+|||+|||+| .+ +..++..| .+|+|+|+ -++.+..+|+...+++++||
T Consensus 28 ~~~~~~vLDiGcG~G--~~--------a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 28 TVAPCKTLDLGCGQG--RN--------SLYLSLAG-YDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred cCCCCcEEEeCCCCC--HH--------HHHHHHCC-CeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 445679999999999 66 67777776 47999999 13567777877666567899
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
+|++..+++++ +..+...++..+.++|+|||++++.
T Consensus 97 ~I~~~~~~~~~-~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 97 FIFSTVVFMFL-QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEEEecccccC-CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99998876655 3346789999999999999996554
No 23
>KOG1270|consensus
Probab=99.39 E-value=5.9e-13 Score=115.84 Aligned_cols=85 Identities=21% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------C----ceEEEEccccccCCC
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------L----ILEVIQNKIENVELP 106 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~----~i~~~~~d~~~~~~~ 106 (252)
|++|||+|||+| ++ +..+++.| ++|+|+|+ . ++.+...++..+.
T Consensus 90 g~~ilDvGCGgG--LL--------SepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-- 156 (282)
T KOG1270|consen 90 GMKILDVGCGGG--LL--------SEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-- 156 (282)
T ss_pred CceEEEeccCcc--cc--------chhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--
Confidence 478999999999 99 99999998 57999999 2 3555666665554
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.||.|+|..++.|. .++..++..+.++|+|||++++++..
T Consensus 157 ~~fDaVvcsevleHV---~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 157 GKFDAVVCSEVLEHV---KDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred cccceeeeHHHHHHH---hCHHHHHHHHHHHhCCCCceEeeehh
Confidence 569999997775554 89999999999999999999998754
No 24
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.35 E-value=1.2e-11 Score=117.88 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=74.6
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-C
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-E 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~ 107 (252)
....++.+|||+|||+| .+ +..++.....+|+|+|+ .++.|+++|+...+++ +
T Consensus 262 ~~~~~~~~vLDiGcG~G--~~--------~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~ 331 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIG--GG--------DFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDN 331 (475)
T ss_pred cCCCCCCEEEEEeccCC--HH--------HHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCC
Confidence 34567889999999999 44 44555432347999999 3678999999988776 7
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+||+|+|..+++|+ .++..++..+.++|+|||+|++....
T Consensus 332 ~fD~I~s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 332 SFDVIYSRDTILHI---QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred CEEEEEECCccccc---CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 89999997775555 67889999999999999999998654
No 25
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=4.5e-12 Score=111.05 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=72.5
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhh---cCCCcEEEeeC------------------CceEEEEccccccCC
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK---VHPLDHYAPQY------------------LILEVIQNKIENVEL 105 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~---~g~~~v~gvD~------------------~~i~~~~~d~~~~~~ 105 (252)
..++.+|||||||+| .+ +..+++ .+..+++|+|+ .+++++++|+..+++
T Consensus 54 ~~~~~~vLDlGcGtG--~~--------~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~ 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLG--AA--------TLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI 123 (247)
T ss_pred CCCCCEEEEEcccCC--HH--------HHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC
Confidence 457789999999999 44 444443 22357999999 268999999988765
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ .+|+|++..+++++. ......++..+.+.|+|||.|++....
T Consensus 124 ~-~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 124 E-NASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred C-CCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 4 599999988777774 345788999999999999999998743
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=4.9e-12 Score=111.16 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-C-CC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE-L-PE 107 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~-~-~~ 107 (252)
..+.+|||+|||+| .+ +..++..+ .+|+++|+ .+++++++|+.++. . ++
T Consensus 43 ~~~~~vLDiGcG~G--~~--------a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 43 PRPLRVLDAGGGEG--QT--------AIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred CCCCEEEEeCCCch--HH--------HHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 45689999999999 66 67777776 57999999 25789999998874 2 37
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+||+|++..+++++ .++..++..+.++|+|||++++...
T Consensus 112 ~fD~V~~~~vl~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 112 PVDLILFHAVLEWV---ADPKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred CCCEEEehhHHHhh---CCHHHHHHHHHHHcCCCeEEEEEEE
Confidence 89999998887766 5677899999999999999987643
No 27
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.34 E-value=7.1e-12 Score=105.82 Aligned_cols=91 Identities=21% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f 109 (252)
...++.++||||||.|++ +.++++.|. .|+|+|+ -.|+..+.|+.+..+++.|
T Consensus 27 ~~~~~g~~LDlgcG~GRN----------alyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRN----------ALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp TTS-SSEEEEES-TTSHH----------HHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred hhcCCCcEEEcCCCCcHH----------HHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence 345678999999999944 668899985 6999999 3588899999999888899
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
|+|++..+++++ +.+.+..++..+...++|||++++..
T Consensus 96 D~I~st~v~~fL-~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVSTVVFMFL-QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEESSGGGS--GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEEEEeccC-CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 999997776666 45578999999999999999988754
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.33 E-value=1.3e-11 Score=105.80 Aligned_cols=89 Identities=26% Similarity=0.337 Sum_probs=73.0
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-------------CceEEEEccccccCCC-CceeEE
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-------------LILEVIQNKIENVELP-EKVDII 112 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-------------~~i~~~~~d~~~~~~~-~~fDlI 112 (252)
..+.+|||+|||+| .+ +..++..++ .+++++|+ .++.++.+|+...+++ ++||+|
T Consensus 33 ~~~~~vLDlG~G~G--~~--------~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 102 (240)
T TIGR02072 33 FIPASVLDIGCGTG--YL--------TRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLI 102 (240)
T ss_pred CCCCeEEEECCCcc--HH--------HHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEE
Confidence 44579999999999 55 556666543 46899999 3578999999988766 789999
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++..+++++ .++..++..+.++|+|||.+++...
T Consensus 103 i~~~~l~~~---~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 103 VSNLALQWC---DDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred EEhhhhhhc---cCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 998876665 6788999999999999999998764
No 29
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.33 E-value=5.5e-12 Score=106.08 Aligned_cols=92 Identities=18% Similarity=0.113 Sum_probs=74.1
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCCCceeE
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELPEKVDI 111 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~~~fDl 111 (252)
...-.++||+|||.| .+ +..++.+ +.+++++|+ ++|+++++|+....++++||+
T Consensus 41 ~~ry~~alEvGCs~G--~l--------T~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDL 109 (201)
T PF05401_consen 41 RRRYRRALEVGCSIG--VL--------TERLAPR-CDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDL 109 (201)
T ss_dssp TSSEEEEEEE--TTS--HH--------HHHHGGG-EEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEE
T ss_pred ccccceeEecCCCcc--HH--------HHHHHHh-hCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeE
Confidence 344478999999999 77 7788777 478999999 789999999988877799999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||++-+++++....++..++..+...|+|||.|++.+.
T Consensus 110 IV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 110 IVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 99999999997777899999999999999999999774
No 30
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.33 E-value=8.4e-12 Score=111.11 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=72.4
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEc
Q psy9773 38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQN 98 (252)
Q Consensus 38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~ 98 (252)
.+.+.....+.+|.+|||||||.| .+ +..+++. |+ +|+|+.+ .++.+..+
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG--~~--------~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~ 119 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWG--GL--------AIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQ 119 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTS--HH--------HHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES
T ss_pred HHHHHHHhCCCCCCEEEEeCCCcc--HH--------HHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 345666678999999999999999 66 6677775 64 7999999 57899999
Q ss_pred cccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 99 KIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 99 d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|..+++ .+||.|++..+..++. ...+..++..+.++|+|||++++...
T Consensus 120 D~~~~~--~~fD~IvSi~~~Ehvg-~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 120 DYRDLP--GKFDRIVSIEMFEHVG-RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp -GGG-----S-SEEEEESEGGGTC-GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred eccccC--CCCCEEEEEechhhcC-hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 998876 4899999988777663 35789999999999999999998654
No 31
>PRK08317 hypothetical protein; Provisional
Probab=99.33 E-value=1.2e-11 Score=105.83 Aligned_cols=101 Identities=19% Similarity=0.195 Sum_probs=78.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC----------------CceEEEEc
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY----------------LILEVIQN 98 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~----------------~~i~~~~~ 98 (252)
+...+.......++.+|||+|||+| .+ +..++... ..+++|+|+ .++.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~vLdiG~G~G--~~--------~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 76 (241)
T PRK08317 7 YRARTFELLAVQPGDRVLDVGCGPG--ND--------ARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG 76 (241)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCC--HH--------HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec
Confidence 3444444456788899999999999 55 55555432 357999998 35888999
Q ss_pred cccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 99 KIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 99 d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|+..++++ ++||+|++..+++++ .++..++..+.++|+|||.+++..+.
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHL---EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred ccccCCCCCCCceEEEEechhhcc---CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 99887766 789999997776555 67889999999999999999987653
No 32
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.33 E-value=5.1e-12 Score=112.61 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=74.7
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPE 107 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~ 107 (252)
....|++|||||||+| .. +..++..|++.|+|+|. ..+.++...+.+++..+
T Consensus 112 ~~L~gk~VLDIGC~nG--Y~--------~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~ 181 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNG--YY--------SFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLG 181 (315)
T ss_pred CCcCCCEEEEecCCCc--HH--------HHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccC
Confidence 3578999999999999 66 77888999999999999 22334434566665558
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.||+|+|..+++|. .++...|..++..|+|||.|++.+.
T Consensus 182 ~FDtVF~MGVLYHr---r~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 182 AFDTVFSMGVLYHR---RSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred CcCEEEEeeehhcc---CCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 89999998886665 8899999999999999999998764
No 33
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.32 E-value=1.4e-11 Score=103.86 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELPE 107 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~ 107 (252)
...++.+|||+|||+| .+ +..++. .+..+|+++|+ .++.++++|+.+++..+
T Consensus 42 ~l~~g~~VLDiGcGtG--~~--------al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~ 111 (187)
T PRK00107 42 YLPGGERVLDVGSGAG--FP--------GIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEE 111 (187)
T ss_pred hcCCCCeEEEEcCCCC--HH--------HHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCC
Confidence 3445899999999999 55 555554 33468999999 35899999998876657
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+||+|+++.+ .++..++..+.++|+|||++++....
T Consensus 112 ~fDlV~~~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 112 KFDVVTSRAV-------ASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred CccEEEEccc-------cCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 8999998542 35678999999999999999988654
No 34
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.30 E-value=3e-11 Score=102.74 Aligned_cols=93 Identities=25% Similarity=0.297 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC---------------CceEEEEccccccCCC-
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY---------------LILEVIQNKIENVELP- 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~---------------~~i~~~~~d~~~~~~~- 106 (252)
....++.+|||+|||+| .+ +..+++.++ .+++++|+ .++.++.+|+...+++
T Consensus 35 ~~~~~~~~vldiG~G~G--~~--------~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 35 IGVFKGQKVLDVACGTG--DL--------AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFED 104 (223)
T ss_pred hccCCCCeEEEeCCCCC--hh--------HHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCC
Confidence 33457899999999999 55 555555444 37999999 2578999999888765
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++||+|++..++++. .++..++..+.++|+|||++++....
T Consensus 105 ~~~D~i~~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 105 NSFDAVTIAFGLRNV---TDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred CcEEEEEEeeeeCCc---ccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 789999986664444 67889999999999999999986543
No 35
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.29 E-value=1.6e-11 Score=106.82 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=72.7
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc---CCCcEEEeeC------------------CceEEEEccccccCC
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV---HPLDHYAPQY------------------LILEVIQNKIENVEL 105 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~---g~~~v~gvD~------------------~~i~~~~~d~~~~~~ 105 (252)
..++.+|||+|||+| .+ +..+++. +..+++|+|+ .+++++++|+..+++
T Consensus 51 ~~~~~~iLDlGcG~G--~~--------~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRG--AA--------TLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI 120 (239)
T ss_pred CCCCCEEEEecCCCC--HH--------HHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence 357789999999999 55 4445442 2357999999 257899999998876
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ .+|+|++..+++++. ..+...++..+.++|+|||+|++....
T Consensus 121 ~-~~d~v~~~~~l~~~~-~~~~~~~l~~i~~~LkpgG~l~i~d~~ 163 (239)
T TIGR00740 121 K-NASMVILNFTLQFLP-PEDRIALLTKIYEGLNPNGVLVLSEKF 163 (239)
T ss_pred C-CCCEEeeecchhhCC-HHHHHHHHHHHHHhcCCCeEEEEeecc
Confidence 5 589999988777763 346789999999999999999998753
No 36
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.29 E-value=1.3e-11 Score=110.39 Aligned_cols=88 Identities=20% Similarity=0.260 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVDI 111 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl 111 (252)
.++.+|||+|||+| .. +..++..| .+|+|+|+ .++.+...|+....++++||+
T Consensus 119 ~~~~~vLDlGcG~G--~~--------~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~ 187 (287)
T PRK12335 119 VKPGKALDLGCGQG--RN--------SLYLALLG-FDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDF 187 (287)
T ss_pred cCCCCEEEeCCCCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccE
Confidence 34569999999999 66 66777776 47999999 257778888877766788999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
|++..+++++ +..+...++..+.++|+|||++++.
T Consensus 188 I~~~~vl~~l-~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 188 ILSTVVLMFL-NRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EEEcchhhhC-CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9998877765 3457889999999999999997654
No 37
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.28 E-value=1.8e-11 Score=102.63 Aligned_cols=85 Identities=24% Similarity=0.355 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCCCce
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~f 109 (252)
..+.+|||+|||+| .+ +..++..+ ..+|+|+|. .+++++++|+.++...++|
T Consensus 41 ~~~~~vLDiGcGtG--~~--------s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~f 110 (181)
T TIGR00138 41 LDGKKVIDIGSGAG--FP--------GIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQF 110 (181)
T ss_pred cCCCeEEEecCCCC--cc--------HHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCc
Confidence 34889999999999 55 55655543 357999999 3689999999987555899
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+|++.. + .++..++..+.++|+|||++++...
T Consensus 111 D~I~s~~----~---~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 111 DVITSRA----L---ASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred cEEEehh----h---hCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 9999854 2 2455678888999999999998754
No 38
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.28 E-value=3.8e-11 Score=103.14 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=72.1
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC------------------CceEEEEccccccCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY------------------LILEVIQNKIENVEL 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~------------------~~i~~~~~d~~~~~~ 105 (252)
...++.+|||+|||+| .+ +..++..+. .+++++|+ .++.++.+|+...+.
T Consensus 48 ~~~~~~~vldiG~G~G--~~--------~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 48 GVRPGDKVLDLACGTG--DL--------AIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred CCCCCCeEEEeCCCCC--HH--------HHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 3446789999999999 55 555555443 68999998 247888899988776
Q ss_pred C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ ++||+|++..+++++ .++..++..+.++|+|||++++....
T Consensus 118 ~~~~~D~I~~~~~l~~~---~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 118 PDNSFDAVTIAFGLRNV---PDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred CCCCccEEEEecccccC---CCHHHHHHHHHHhccCCcEEEEEEec
Confidence 5 789999987665544 67889999999999999999876543
No 39
>KOG1540|consensus
Probab=99.27 E-value=6.1e-11 Score=102.97 Aligned_cols=101 Identities=18% Similarity=0.201 Sum_probs=79.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC------CcEEEeeC-------------------
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP------LDHYAPQY------------------- 90 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~------~~v~gvD~------------------- 90 (252)
|.+..........+.++||++||||-+ ++.+.+ .+. .+|+.+|+
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDi----------aFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~ 157 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDI----------AFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKA 157 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchh----------HHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCc
Confidence 344454445667789999999999944 444433 222 57999999
Q ss_pred -CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 -LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 -~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.++.++.+|+.++|++ .+||..++ .+.+.+-.++.+.|++++|+|||||+|.+-..+
T Consensus 158 ~~~~~w~~~dAE~LpFdd~s~D~yTi---afGIRN~th~~k~l~EAYRVLKpGGrf~cLeFs 216 (296)
T KOG1540|consen 158 SSRVEWVEGDAEDLPFDDDSFDAYTI---AFGIRNVTHIQKALREAYRVLKPGGRFSCLEFS 216 (296)
T ss_pred CCceEEEeCCcccCCCCCCcceeEEE---ecceecCCCHHHHHHHHHHhcCCCcEEEEEEcc
Confidence 4588999999999999 89999987 455667788999999999999999999876543
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.27 E-value=2.5e-11 Score=107.45 Aligned_cols=93 Identities=24% Similarity=0.300 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-----------------LILEVIQNKIENVEL 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~ 105 (252)
....++.+|||+|||+| .. +..+++ .++ .+|+++|+ .+++++.+|+..+++
T Consensus 73 ~~~~~g~~VLDiG~G~G--~~--------~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~ 142 (272)
T PRK11873 73 AELKPGETVLDLGSGGG--FD--------CFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV 142 (272)
T ss_pred ccCCCCCEEEEeCCCCC--HH--------HHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC
Confidence 34678899999999999 54 444443 343 36999998 478899999998887
Q ss_pred C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ ++||+|+++.++++. ++...++..+.++|+|||+|++....
T Consensus 143 ~~~~fD~Vi~~~v~~~~---~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 143 ADNSVDVIISNCVINLS---PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CCCceeEEEEcCcccCC---CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 6 789999998775554 56778999999999999999987643
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.26 E-value=5.8e-12 Score=94.53 Aligned_cols=78 Identities=24% Similarity=0.305 Sum_probs=44.8
Q ss_pred EEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC---CCCceeEE
Q psy9773 54 LDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE---LPEKVDII 112 (252)
Q Consensus 54 LDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~~~~fDlI 112 (252)
||+|||+| .+ +..+... ...+++++|+ .....+..+..+.. .+++||+|
T Consensus 1 LdiGcG~G--~~--------~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V 70 (99)
T PF08242_consen 1 LDIGCGTG--RL--------LRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLV 70 (99)
T ss_dssp -EESTTTS---T--------TTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEE
T ss_pred CEeCccCh--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhccccccccee
Confidence 79999999 44 3343333 3367999999 22233333333332 22599999
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEE
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVM 144 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~l 144 (252)
++..+++++ +++..++..+.++|+|||+|
T Consensus 71 ~~~~vl~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 71 VASNVLHHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEE-TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhhHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence 998887777 78889999999999999986
No 42
>PRK05785 hypothetical protein; Provisional
Probab=99.26 E-value=2.5e-11 Score=105.18 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEccccccCCC-CceeEEEeccc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQNKIENVELP-EKVDIIVSEWM 117 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~d~~~~~~~-~~fDlIv~~~~ 117 (252)
.++.+||||||||| .+ +..+++....+|+|+|+ ....++++|+.+++++ ++||+|++..+
T Consensus 50 ~~~~~VLDlGcGtG--~~--------~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 50 GRPKKVLDVAAGKG--EL--------SYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCCeEEEEcCCCC--HH--------HHHHHHhcCCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecCh
Confidence 34789999999999 55 55666652257999999 2345788999999887 89999999776
Q ss_pred ccccCChhhHHHHHHHHhccccCCe
Q psy9773 118 GFYLLHESMIDSVIFARDKFLKPEG 142 (252)
Q Consensus 118 ~~~l~~~~~~~~~l~~l~~~LkpgG 142 (252)
++++ .++..+++++.|+|+|.+
T Consensus 120 l~~~---~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 120 LHAS---DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred hhcc---CCHHHHHHHHHHHhcCce
Confidence 5544 788999999999999953
No 43
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.24 E-value=2.3e-11 Score=104.37 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=68.9
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCCCceeE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELPEKVDI 111 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDl 111 (252)
++|||+|||+| .+ +..+++.. ..+++|+|+ .+++++.+|+...+.+++||+
T Consensus 1 ~~vLDiGcG~G--~~--------~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~ 70 (224)
T smart00828 1 KRVLDFGCGYG--SD--------LIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDL 70 (224)
T ss_pred CeEEEECCCCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCE
Confidence 47999999999 54 45555532 357999998 357899999877666688999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|++..+++++ .++..+|..+.++|+|||++++...
T Consensus 71 I~~~~~l~~~---~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 71 VFGFEVIHHI---KDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred eehHHHHHhC---CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 9997776665 5678999999999999999998764
No 44
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=5.1e-11 Score=113.48 Aligned_cols=94 Identities=21% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccc--cCCC-
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIEN--VELP- 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~--~~~~- 106 (252)
....++.+|||||||+| .+ +..+++.+ .+|+|+|+ .++.++++|+.. ++++
T Consensus 33 l~~~~~~~vLDlGcG~G--~~--------~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~ 101 (475)
T PLN02336 33 LPPYEGKSVLELGAGIG--RF--------TGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD 101 (475)
T ss_pred cCccCCCEEEEeCCCcC--HH--------HHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence 34456789999999999 66 66666664 57999998 368899999964 4445
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++||+|++.++++++.. ..+..++..+.++|+|||++++....
T Consensus 102 ~~fD~I~~~~~l~~l~~-~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSD-KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred CCEEEEehhhhHHhCCH-HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 78999999988887743 35789999999999999999987644
No 45
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=7.3e-11 Score=104.79 Aligned_cols=100 Identities=24% Similarity=0.174 Sum_probs=82.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEcc
Q psy9773 38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNK 99 (252)
Q Consensus 38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d 99 (252)
.+.+....++.+|.+|||||||-| .+ ++++++....+|+|+++ .+++++..|
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG--~l--------~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d 130 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWG--GL--------AIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD 130 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChh--HH--------HHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc
Confidence 344555678999999999999999 66 77777763367999999 478899999
Q ss_pred ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..++. ++||-|+|..|..|+-. .....+|..+.++|+|||++++.+..
T Consensus 131 ~rd~~--e~fDrIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 131 YRDFE--EPFDRIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred ccccc--cccceeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEEEec
Confidence 98886 44999999888777644 35899999999999999999987654
No 46
>PRK06922 hypothetical protein; Provisional
Probab=99.22 E-value=6.8e-11 Score=115.15 Aligned_cols=94 Identities=23% Similarity=0.335 Sum_probs=72.4
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------CceEEEEccccccC--CC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LILEVIQNKIENVE--LP 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i~~~~~d~~~~~--~~ 106 (252)
...++.+|||+|||+| .+ +..++. .+..+++|+|+ .++.++++|+.+++ ++
T Consensus 415 d~~~g~rVLDIGCGTG--~l--------s~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fe 484 (677)
T PRK06922 415 DYIKGDTIVDVGAGGG--VM--------LDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFE 484 (677)
T ss_pred hhcCCCEEEEeCCCCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccC
Confidence 3456889999999999 55 444444 33368999999 24677889998876 44
Q ss_pred -CceeEEEecccccccC----------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 -EKVDIIVSEWMGFYLL----------HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 -~~fDlIv~~~~~~~l~----------~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++||+|++++++|++. +..++..+|.++.++|+|||++++...
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 7899999987766542 234788999999999999999999764
No 47
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.22 E-value=2e-11 Score=92.17 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=60.4
Q ss_pred EEEEcCCcCchhhhhccCccchHHHhhc---CC-CcEEEeeC----------------CceEEEEccccccCCC-CceeE
Q psy9773 53 VLDVGTGTGKSILLQGHGVDHHSFCTKV---HP-LDHYAPQY----------------LILEVIQNKIENVELP-EKVDI 111 (252)
Q Consensus 53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~---g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~fDl 111 (252)
|||+|||+|..+ ..+... ++ .+++|+|+ .+++++++|+.+++.. ++||+
T Consensus 1 ILDlgcG~G~~~----------~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVT----------RALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHH----------HHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEE
T ss_pred CEEeecCCcHHH----------HHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeE
Confidence 799999999444 344433 32 68999999 4789999999998755 79999
Q ss_pred EEeccc-ccccCChhhHHHHHHHHhccccCCe
Q psy9773 112 IVSEWM-GFYLLHESMIDSVIFARDKFLKPEG 142 (252)
Q Consensus 112 Iv~~~~-~~~l~~~~~~~~~l~~l~~~LkpgG 142 (252)
|++... +++ .+......+++++.++|+|||
T Consensus 71 v~~~~~~~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 71 VVCSGLSLHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEE-TTGGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred EEEcCCccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 999544 566 566689999999999999998
No 48
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.22 E-value=1.3e-10 Score=96.26 Aligned_cols=91 Identities=25% Similarity=0.266 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC-----------------CceEEEEccccccCCCCcee
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY-----------------LILEVIQNKIENVELPEKVD 110 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~-----------------~~i~~~~~d~~~~~~~~~fD 110 (252)
.+.+|||+|||+| .+ +..++..++. +|+++|+ .++.++.+|+.....+++||
T Consensus 31 ~~~~vLDlG~G~G--~i--------~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD 100 (170)
T PF05175_consen 31 KGGRVLDLGCGSG--VI--------SLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFD 100 (170)
T ss_dssp TTCEEEEETSTTS--HH--------HHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEE
T ss_pred cCCeEEEecCChH--HH--------HHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccccee
Confidence 7789999999999 77 7788876654 7999999 23889999987765568999
Q ss_pred EEEecccccccCC--hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 111 IIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 111 lIv~~~~~~~l~~--~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+|++++-.+.... ......++..+.++|+|||.|++...
T Consensus 101 ~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 101 LIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp EEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 9999875332211 12467899999999999999977554
No 49
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.21 E-value=7.8e-11 Score=100.95 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=69.7
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------CceEEEEccccccC--------CC-C
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------LILEVIQNKIENVE--------LP-E 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------~~i~~~~~d~~~~~--------~~-~ 107 (252)
....++.+|||||||+| .+ +..+++. +. ..|+|+|+ .++.++++|+.+.. .. +
T Consensus 47 ~~~~~~~~VLDlG~GtG--~~--------t~~l~~~~~~~~~V~aVDi~~~~~~~~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 47 KLFKPGMTVVDLGAAPG--GW--------SQYAVTQIGDKGRVIACDILPMDPIVGVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred ccCCCCCEEEEEcccCC--HH--------HHHHHHHcCCCceEEEEecccccCCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence 34577899999999999 55 5555553 32 47999998 36889999998853 33 7
Q ss_pred ceeEEEecccccccCChh-h-------HHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGFYLLHES-M-------IDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~-~-------~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+||+|+|+.+.++..... + ...+|..+.++|+|||.|++..
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 899999976544432110 1 2568899999999999999965
No 50
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.21 E-value=6.8e-11 Score=104.78 Aligned_cols=58 Identities=16% Similarity=0.202 Sum_probs=49.0
Q ss_pred ceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 92 ILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 92 ~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++.|.++|+.+.+++ ++||+|+|.++++++. .+....++..+.++|+|||+|++....
T Consensus 186 ~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 186 RVRFAKHNLLAESPPLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred cCEEeeccCCCCCCccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 578899999988765 8899999988877763 346778999999999999999997654
No 51
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.20 E-value=4.7e-11 Score=91.82 Aligned_cols=90 Identities=24% Similarity=0.247 Sum_probs=68.6
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC--CC-Cc
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE--LP-EK 108 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~--~~-~~ 108 (252)
|.+|||+|||+| .+ ...+++.+..+++|+|+ .++.++++|+.... .+ ++
T Consensus 1 g~~vlD~~~G~G--~~--------~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 70 (117)
T PF13659_consen 1 GDRVLDPGCGSG--TF--------LLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGK 70 (117)
T ss_dssp TEEEEEETSTTC--HH--------HHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-
T ss_pred CCEEEEcCcchH--HH--------HHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCce
Confidence 568999999999 66 66666666678999999 57899999998886 33 88
Q ss_pred eeEEEecccccccCC-----hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLH-----ESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~-----~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||+|++++-...... ......++..+.++|+|||.+++..+
T Consensus 71 ~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 71 FDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999999765432211 12457889999999999999998764
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.19 E-value=1.3e-10 Score=106.27 Aligned_cols=88 Identities=23% Similarity=0.138 Sum_probs=70.7
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------CceEEEEccccccCCC-CceeE
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------LILEVIQNKIENVELP-EKVDI 111 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~-~~fDl 111 (252)
.++.+|||||||+| .+ +..+++ .+..+++++|+ .++.++.+|+.+++++ ++||+
T Consensus 112 ~~~~~VLDLGcGtG--~~--------~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTG--FT--------TLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCc--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence 46789999999999 44 444444 33457999998 3688999999988876 78999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
|++..+++++ .+...+|.++.++|+|||++++..
T Consensus 182 VIs~~~L~~~---~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYW---PDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhC---CCHHHHHHHHHHhcCCCcEEEEEE
Confidence 9997776665 566789999999999999998764
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=2.7e-10 Score=87.89 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=65.9
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~-- 104 (252)
....++.+|||+|||+| .+ +..+++. +..+++++|+ .++.++.+|+....
T Consensus 15 ~~~~~~~~vldlG~G~G--~~--------~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 15 LRLRPGDVLWDIGAGSG--SI--------TIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED 84 (124)
T ss_pred cCCCCCCEEEEeCCCCC--HH--------HHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh
Confidence 34566789999999999 55 5566654 3368999998 46788888876432
Q ss_pred CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+.+||+|++... . .....++..+.++|+|||+|++..
T Consensus 85 ~~~~~D~v~~~~~---~---~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 SLPEPDRVFIGGS---G---GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hcCCCCEEEECCc---c---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 2268999998543 1 235689999999999999999875
No 54
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.18 E-value=1.8e-10 Score=107.28 Aligned_cols=96 Identities=22% Similarity=0.245 Sum_probs=73.4
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP 106 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~ 106 (252)
+.......++.+|||+|||+| .+ +..+++....+|+|+|+ ..+++..+|...+ +
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G--~~--------a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l--~ 226 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWG--GL--------ARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL--N 226 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCcc--HH--------HHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc--C
Confidence 333456778999999999999 66 56666542347999999 2467777787665 4
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++||+|++..+++++. ..++..++..+.++|+|||++++...
T Consensus 227 ~~fD~Ivs~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 227 GQFDRIVSVGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCCEEEEeCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 7899999977766653 33578899999999999999998754
No 55
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=8.2e-11 Score=105.25 Aligned_cols=87 Identities=25% Similarity=0.274 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceE----EEEccccccCCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILE----VIQNKIENVELPE 107 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~----~~~~d~~~~~~~~ 107 (252)
...+|.+|||+||||| .| ++.+++.|+++++|+|+ +.+. ....+....+..+
T Consensus 159 ~~~~g~~vlDvGcGSG--IL--------aIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~ 228 (300)
T COG2264 159 LLKKGKTVLDVGCGSG--IL--------AIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENG 228 (300)
T ss_pred hhcCCCEEEEecCChh--HH--------HHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccC
Confidence 3458999999999999 99 99999999999999999 3333 1111111222225
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+||+||++-.. .-+..+...+.++|+|||+++++.
T Consensus 229 ~~DvIVANILA------~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 229 PFDVIVANILA------EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cccEEEehhhH------HHHHHHHHHHHHHcCCCceEEEEe
Confidence 89999996632 235578888999999999999986
No 56
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.18 E-value=2.4e-10 Score=97.63 Aligned_cols=89 Identities=8% Similarity=0.094 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCC-CceeE
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELP-EKVDI 111 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDl 111 (252)
...++.+|||+|||+| .+ +..++.. +..+++|+|+ .++.++++|+.+ +++ ++||+
T Consensus 40 ~~~~~~~VLDiGCG~G--~~--------~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~-~~~~~sfD~ 108 (204)
T TIGR03587 40 RLPKIASILELGANIG--MN--------LAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFD-PFKDNFFDL 108 (204)
T ss_pred hcCCCCcEEEEecCCC--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccC-CCCCCCEEE
Confidence 3456789999999999 55 4555553 3467999999 457888999887 554 79999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
|++..+++|+. ..++..++.++.+++ ++.+++..
T Consensus 109 V~~~~vL~hl~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 109 VLTKGVLIHIN-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EEECChhhhCC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 99988888774 457889999999987 45666544
No 57
>KOG4300|consensus
Probab=99.16 E-value=2.4e-10 Score=96.58 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=68.9
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceE-EEEccccccC-CC-Cce
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILE-VIQNKIENVE-LP-EKV 109 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~-~~~~d~~~~~-~~-~~f 109 (252)
...||+||||||++.- +....+..+|+++|. ..+. |+.++..+++ .+ +++
T Consensus 77 K~~vLEvgcGtG~Nfk----------fy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~ 146 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFK----------FYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSY 146 (252)
T ss_pred ccceEEecccCCCCcc----------cccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCe
Confidence 3568999999995443 222222357999999 3455 8999999997 34 899
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+||+..+++.. .++.+.|+++.|+|+|||++++...
T Consensus 147 DtVV~TlvLCSv---e~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 147 DTVVCTLVLCSV---EDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred eeEEEEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 999998887766 7889999999999999999998764
No 58
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=1.1e-10 Score=104.87 Aligned_cols=94 Identities=24% Similarity=0.287 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEE
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVI 96 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~ 96 (252)
....++|.. ...++++|||+||||| +| ++.+++.|+++|+|+|+ .++.+
T Consensus 149 ~lcl~~l~~--~~~~g~~vLDvG~GSG--IL--------aiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v- 215 (295)
T PF06325_consen 149 RLCLELLEK--YVKPGKRVLDVGCGSG--IL--------AIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEV- 215 (295)
T ss_dssp HHHHHHHHH--HSSTTSEEEEES-TTS--HH--------HHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE-
T ss_pred HHHHHHHHH--hccCCCEEEEeCCcHH--HH--------HHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE-
Confidence 333444443 3577899999999999 99 99999999999999999 33322
Q ss_pred EccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 97 ~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
....+. ..++||+|+++.... -+..++..+.++|+|||+|+++..
T Consensus 216 -~~~~~~-~~~~~dlvvANI~~~------vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 216 -SLSEDL-VEGKFDLVVANILAD------VLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp -SCTSCT-CCS-EEEEEEES-HH------HHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred -EEeccc-ccccCCEEEECCCHH------HHHHHHHHHHHhhCCCCEEEEccc
Confidence 211111 127899999966522 356788889999999999999864
No 59
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.15 E-value=3.2e-10 Score=105.11 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=69.5
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC--------------------CceEEEEccccccC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY--------------------LILEVIQNKIENVE 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~--------------------~~i~~~~~d~~~~~ 104 (252)
+...+.+|||+|||+| .+ +..+++.++ .+|+++|+ .++.++..|+....
T Consensus 225 p~~~~~~VLDLGCGtG--vi--------~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~ 294 (378)
T PRK15001 225 PENLEGEIVDLGCGNG--VI--------GLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV 294 (378)
T ss_pred CcccCCeEEEEecccc--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccC
Confidence 3344579999999999 77 777766543 58999999 14677888876543
Q ss_pred CCCceeEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 105 LPEKVDIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.+.+||+|+|++..|... .......+|..+.++|+|||.|++...
T Consensus 295 ~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 336899999987654331 223456889999999999999999864
No 60
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.15 E-value=2.4e-10 Score=98.71 Aligned_cols=96 Identities=26% Similarity=0.307 Sum_probs=72.8
Q ss_pred HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc
Q psy9773 40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV 103 (252)
Q Consensus 40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~ 103 (252)
.+.......++.+|||+|||+| .+ +..+++.+ .+++++|+ ..+.++.+++..+
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G--~~--------~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 107 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGG--IL--------SESMARLG-ADVTGIDASEENIEVARLHALESGLKIDYRQTTAEEL 107 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCC--HH--------HHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHh
Confidence 3333334567899999999999 66 56666665 46999998 2356777887776
Q ss_pred C--CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 104 E--LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 104 ~--~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+ ..++||+|++..++.+. .++..++..+.++|+|||++++..+
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHV---PDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhhcCCCccEEEEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEEec
Confidence 4 23789999997665544 6778899999999999999998764
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.14 E-value=2.3e-10 Score=95.28 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKVD 110 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD 110 (252)
..++.+|||+|||+| .+ +..++..+. +++++|+ .++.++.+|+.... .++||
T Consensus 17 ~~~~~~vLdlG~G~G--~~--------~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTG--LV--------AIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV-RGKFD 84 (179)
T ss_pred hcCCCeEEEeCCChh--HH--------HHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc-CCccc
Confidence 345678999999999 66 667777765 7999999 24677888886654 36899
Q ss_pred EEEecccccccCCh------------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 111 IIVSEWMGFYLLHE------------------SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 111 lIv~~~~~~~l~~~------------------~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|++++..+..... ..+..++..+.++|+|||.+++....
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 99997654333211 12567899999999999999887654
No 62
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.13 E-value=6.8e-10 Score=95.04 Aligned_cols=106 Identities=22% Similarity=0.277 Sum_probs=78.3
Q ss_pred cHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------C-c
Q psy9773 30 DTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------L-I 92 (252)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~-~ 92 (252)
+..+...+...+........+.+|||+|||+| .+ +..+++.++ .++++|+ . +
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G--~~--------~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~ 94 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGG--LL--------SEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK 94 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCC--HH--------HHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 33455555555543322345789999999999 65 556666654 5999998 1 4
Q ss_pred eEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 93 LEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 93 i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+.+..+|+..++.. ++||+|++..+++++ .++..++..+.++|+|||.+++...
T Consensus 95 ~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 95 IEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV---PDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred eEEEeCCHHHhhcCCCCCccEEEehhHHHhC---CCHHHHHHHHHHhcCCCcEEEEEec
Confidence 77888888777544 789999997765555 6778999999999999999998754
No 63
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=98.93 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=80.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCCCceeEE
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELPEKVDII 112 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlI 112 (252)
....+..+|.|||||+|..+- ++..+.+...++|+|- .+++|..+|+.++.....+|+|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTe---------lL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll 96 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTE---------LLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL 96 (257)
T ss_pred CCccccceeeecCCCCCHHHH---------HHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence 456677899999999994442 4444455578999998 7899999999999888899999
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
+++-+++++ ++-..+|.++...|.|||.|-+.-+....
T Consensus 97 faNAvlqWl---pdH~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 97 FANAVLQWL---PDHPELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred hhhhhhhhc---cccHHHHHHHHHhhCCCceEEEECCCccC
Confidence 999998888 66668999999999999999998876443
No 64
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=2e-10 Score=100.28 Aligned_cols=95 Identities=20% Similarity=0.212 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENVELP 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~~~~ 106 (252)
......+|||+|||+| .+ +++++.+ ...+++||++ .+|+++++|+..+...
T Consensus 41 ~~~~~~~IlDlGaG~G--~l--------~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 41 PVPKKGRILDLGAGNG--AL--------GLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred ccccCCeEEEecCCcC--HH--------HHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 4445889999999999 77 7887776 4468999999 7899999999999655
Q ss_pred ---CceeEEEecccccccCCh---------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 ---EKVDIIVSEWMGFYLLHE---------------SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ---~~fDlIv~~~~~~~l~~~---------------~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+||+|+|++-.+-.... .++..+++.+.++|||||.+++..+.
T Consensus 111 ~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 111 LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 569999997753322111 15889999999999999999988753
No 65
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.12 E-value=5.8e-10 Score=95.86 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------C------------------ceEEEEc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------L------------------ILEVIQN 98 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~------------------~i~~~~~ 98 (252)
.++.+|||+|||.| .- +..++.+|. +|+|+|+ . +++++++
T Consensus 33 ~~~~rvLd~GCG~G--~d--------a~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 101 (213)
T TIGR03840 33 PAGARVFVPLCGKS--LD--------LAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG 101 (213)
T ss_pred CCCCeEEEeCCCch--hH--------HHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence 46789999999999 44 567778874 6999998 0 3778999
Q ss_pred cccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 99 KIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 99 d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+.+++.. ++||+|+...+++++ .......++..+.++|+|||++++.+.
T Consensus 102 D~~~~~~~~~~~fD~i~D~~~~~~l-~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 102 DFFALTAADLGPVDAVYDRAALIAL-PEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred cCCCCCcccCCCcCEEEechhhccC-CHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 99988753 679999986666665 445678899999999999998666544
No 66
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.11 E-value=8.3e-10 Score=92.51 Aligned_cols=87 Identities=25% Similarity=0.304 Sum_probs=65.5
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIENVELP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~~~~~~ 106 (252)
....++.+|||+|||+| .+ +..+++.++ .+++++|+ .+++++.+|+. ...+
T Consensus 27 l~~~~~~~vLDiG~G~G--~~--------~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~-~~~~ 95 (187)
T PRK08287 27 LELHRAKHLIDVGAGTG--SV--------SIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAP-IELP 95 (187)
T ss_pred cCCCCCCEEEEECCcCC--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCch-hhcC
Confidence 34567889999999999 66 666666433 58999999 35788888874 2334
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++||+|++.... ..+..++..+.++|+|||++++..
T Consensus 96 ~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEE
Confidence 689999985431 235678889999999999998864
No 67
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.11 E-value=6.6e-10 Score=99.59 Aligned_cols=86 Identities=24% Similarity=0.303 Sum_probs=64.8
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK 108 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~ 108 (252)
..++.+|||+|||+| .+ +..+++.|+.+|+|+|+ .++.+...+.... ..++
T Consensus 157 ~~~g~~VLDvGcGsG--~l--------ai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~ 225 (288)
T TIGR00406 157 DLKDKNVIDVGCGSG--IL--------SIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGK 225 (288)
T ss_pred cCCCCEEEEeCCChh--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCC
Confidence 457799999999999 77 77777888778999999 1344555442221 2368
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||+|+++.+. ..+..++..+.++|+|||+|+++..
T Consensus 226 fDlVvan~~~------~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 226 ADVIVANILA------EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ceEEEEecCH------HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9999996542 2456788999999999999999764
No 68
>PLN03075 nicotianamine synthase; Provisional
Probab=99.10 E-value=6.6e-10 Score=99.58 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-------------------CceEEEEccccccCCC-C
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-------------------LILEVIQNKIENVELP-E 107 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-------------------~~i~~~~~d~~~~~~~-~ 107 (252)
++++|+|||||.|..+- ..+++... ..+++++|+ .+++|..+|+.+.... +
T Consensus 123 ~p~~VldIGcGpgplta--------iilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTS--------IVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccC
Confidence 77999999999884433 33343332 246999998 4699999999887533 7
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.||+|++. +++++. ..+...+|..+.+.|+|||+|++...
T Consensus 195 ~FDlVF~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 195 EYDVVFLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred CcCEEEEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEecc
Confidence 89999997 544432 24788999999999999999999874
No 69
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.10 E-value=5.6e-10 Score=100.60 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=75.0
Q ss_pred HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEccc
Q psy9773 39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKI 100 (252)
Q Consensus 39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~ 100 (252)
..+.......++.+|||||||+| .+ +..+++..+ .+++++|. .+++++.+|+
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G--~~--------~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~ 208 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIG--DI--------SAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDI 208 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchh--HH--------HHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCc
Confidence 33444345667789999999999 66 666666543 57999997 4689999999
Q ss_pred cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
...+++. +|+|++..++|.. +......+|+++++.|+|||+|++....
T Consensus 209 ~~~~~~~-~D~v~~~~~lh~~-~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 209 YKESYPE-ADAVLFCRILYSA-NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred cCCCCCC-CCEEEeEhhhhcC-ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 8765554 7999886665543 3335678999999999999999988753
No 70
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.10 E-value=2.4e-10 Score=97.24 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccc-cccC--CC-
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKI-ENVE--LP- 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~-~~~~--~~- 106 (252)
++.+|||+|||+| .+ +..++.. +..+++|+|+ .++.++++|+ ..++ ++
T Consensus 40 ~~~~VLDiGcGtG--~~--------~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~ 109 (202)
T PRK00121 40 DAPIHLEIGFGKG--EF--------LVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD 109 (202)
T ss_pred CCCeEEEEccCCC--HH--------HHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence 6789999999999 55 5555543 3357999999 4688999999 6655 43
Q ss_pred CceeEEEecccccccC--Ch---hhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLL--HE---SMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~--~~---~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++||+|++.....+.. +. .....++..+.++|+|||+|++...
T Consensus 110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 7899999854322111 11 0246789999999999999998764
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=99.10 E-value=7.5e-10 Score=95.46 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCCce
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~f 109 (252)
...++.+|||+|||+| .+ +..++..++.+++++|+ .++.++.+|+......++|
T Consensus 33 ~~~~~~~vLDlGcG~G--~~--------~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~f 102 (223)
T PRK14967 33 GLGPGRRVLDLCTGSG--AL--------AVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPF 102 (223)
T ss_pred ccCCCCeEEEecCCHH--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCe
Confidence 4567789999999999 66 66777766668999999 2467888888765333789
Q ss_pred eEEEecccccccCC------------------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 110 DIIVSEWMGFYLLH------------------ESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 110 DlIv~~~~~~~l~~------------------~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|+|+++.-...... ...+..++..+.++|+|||++++....
T Consensus 103 D~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 103 DVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred eEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99999652111000 012566888899999999999986544
No 72
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.10 E-value=2.7e-10 Score=95.59 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccC--CC-CceeEE
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVE--LP-EKVDII 112 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~--~~-~~fDlI 112 (252)
-+.+|.||||||||.| .+ ...+........+|+|+ ..++++++|+..-- ++ ++||.|
T Consensus 10 ~I~pgsrVLDLGCGdG--~L--------L~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDG--EL--------LAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred HcCCCCEEEecCCCch--HH--------HHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEE
Confidence 3578999999999999 55 33344322356899999 77899999997762 44 899999
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|++.++..+ ..+..+|.++. +-|...+++.++
T Consensus 80 IlsqtLQ~~---~~P~~vL~Eml---RVgr~~IVsFPN 111 (193)
T PF07021_consen 80 ILSQTLQAV---RRPDEVLEEML---RVGRRAIVSFPN 111 (193)
T ss_pred ehHhHHHhH---hHHHHHHHHHH---HhcCeEEEEecC
Confidence 997776555 67888888875 446677777765
No 73
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.08 E-value=6.7e-10 Score=93.22 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=67.1
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC------CceEEEEccccccC--------CC-C
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY------LILEVIQNKIENVE--------LP-E 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~------~~i~~~~~d~~~~~--------~~-~ 107 (252)
....++.+|||+|||+| .+ +..++.. +..+++++|+ .++.++++|+.+.. .+ +
T Consensus 28 ~~i~~g~~VLDiG~GtG--~~--------~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPG--GW--------SQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred cccCCCCEEEEecCCCC--HH--------HHHHHHHhCCCceEEEEeccccccCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 56688999999999999 55 4444443 2347999999 36788888987643 23 6
Q ss_pred ceeEEEeccccc----c-cCCh---hhHHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGF----Y-LLHE---SMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~----~-l~~~---~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+||+|+++...+ + +.+. .....++..+.++|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 799999854311 1 1111 134688999999999999999864
No 74
>PRK06202 hypothetical protein; Provisional
Probab=99.06 E-value=1.8e-09 Score=93.51 Aligned_cols=89 Identities=16% Similarity=0.094 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhh----cCC-CcEEEeeC--------------CceEEEEccccccCCC-
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK----VHP-LDHYAPQY--------------LILEVIQNKIENVELP- 106 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~----~g~-~~v~gvD~--------------~~i~~~~~d~~~~~~~- 106 (252)
..++.+|||+|||+| .+ +..++. .|. .+++|+|+ .++.+...+...++.+
T Consensus 58 ~~~~~~iLDlGcG~G--~~--------~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~ 127 (232)
T PRK06202 58 ADRPLTLLDIGCGGG--DL--------AIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEG 127 (232)
T ss_pred CCCCcEEEEeccCCC--HH--------HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccC
Confidence 356789999999999 44 444432 232 47999999 3466777776666554
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++||+|+++.+++++... .+..++..+.++++ |.+++..
T Consensus 128 ~~fD~V~~~~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~d 166 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDA-EVVRLLADSAALAR--RLVLHND 166 (232)
T ss_pred CCccEEEECCeeecCChH-HHHHHHHHHHHhcC--eeEEEec
Confidence 789999999888887443 46789999999998 4555444
No 75
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.05 E-value=1.5e-09 Score=96.44 Aligned_cols=83 Identities=12% Similarity=0.192 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC----CCcEEEeeC------------CceEEEEccccccCCC-Ccee
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH----PLDHYAPQY------------LILEVIQNKIENVELP-EKVD 110 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g----~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fD 110 (252)
..+.+|||+|||+| .+ +..++... ...++|+|+ .++.+.++|+.+++++ ++||
T Consensus 84 ~~~~~vLDiGcG~G--~~--------~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD 153 (272)
T PRK11088 84 EKATALLDIGCGEG--YY--------THALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLD 153 (272)
T ss_pred CCCCeEEEECCcCC--HH--------HHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCcee
Confidence 35578999999999 44 44443321 136899999 5688999999998877 7899
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|++... + ..+.++.|+|+|||+|++..+.
T Consensus 154 ~I~~~~~----~------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 154 AIIRIYA----P------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred EEEEecC----C------CCHHHHHhhccCCCEEEEEeCC
Confidence 9988432 1 2356788999999999987654
No 76
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.05 E-value=1.4e-09 Score=92.82 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=64.1
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKI 100 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~ 100 (252)
+.......++.+|||+|||+| .. +..++.. + ..+|+++|+ .+++++.+|.
T Consensus 64 ~~~~l~~~~~~~VLDiG~GsG--~~--------~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~ 133 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGSG--YQ--------AAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG 133 (205)
T ss_pred HHHhcCCCCCCEEEEECcCcc--HH--------HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc
Confidence 333345677899999999999 55 5455442 2 247999999 2478899998
Q ss_pred cccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 101 ENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 101 ~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
...... .+||+|++.....++ ...+.+.|+|||+|++...
T Consensus 134 ~~~~~~~~~fD~Ii~~~~~~~~---------~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAAASTI---------PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred ccCCccCCCccEEEEccCcchh---------hHHHHHhcCcCcEEEEEEc
Confidence 775433 789999996653332 2356788999999987543
No 77
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.05 E-value=2.3e-09 Score=91.89 Aligned_cols=87 Identities=22% Similarity=0.109 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK 108 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~ 108 (252)
..++.+|||+|||+| .+ +..++..+ .+++|+|+ .++.+.++|+..++ ++
T Consensus 53 ~~~~~~vLDiGcG~G--~~--------~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTG--LL--------SIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GE 119 (219)
T ss_pred CCCCCEEEEEeCCCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CC
Confidence 456899999999999 66 66666665 47999999 26889999988876 78
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
||+|++..++++++ ...+..++.++.+++++++++.+.
T Consensus 120 fD~ii~~~~l~~~~-~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 120 FDIVVCMDVLIHYP-ASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred cCEEEEhhHHHhCC-HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999976665553 345788999999999887777654
No 78
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.04 E-value=1e-09 Score=94.63 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=68.9
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEEE
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVIQ 97 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~~ 97 (252)
..++.+|||+|||.|+. +..++..|. +|+|+|+ .+|++++
T Consensus 35 ~~~~~rvL~~gCG~G~d----------a~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~ 103 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLD----------MLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYC 103 (218)
T ss_pred CCCCCeEEEeCCCChHh----------HHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEE
Confidence 35678999999999944 557777774 6999998 1367789
Q ss_pred ccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773 98 NKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP 146 (252)
Q Consensus 98 ~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~ 146 (252)
+|+.++... +.||+|+-..+++++ .......++..+.++|+|||++++
T Consensus 104 ~D~~~l~~~~~~~fd~v~D~~~~~~l-~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 104 GDFFALTAADLADVDAVYDRAALIAL-PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CcccCCCcccCCCeeEEEehHhHhhC-CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 999988644 689999987766666 445688999999999999987544
No 79
>PRK04266 fibrillarin; Provisional
Probab=99.04 E-value=1.9e-09 Score=93.49 Aligned_cols=89 Identities=22% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------CceEEEEcccccc----C
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------LILEVIQNKIENV----E 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------~~i~~~~~d~~~~----~ 104 (252)
..+.++.+|||+|||+| .+ +..+++. +..+|+|+|+ .++.++.+|+... +
T Consensus 68 l~i~~g~~VlD~G~G~G--~~--------~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~ 137 (226)
T PRK04266 68 FPIKKGSKVLYLGAASG--TT--------VSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAH 137 (226)
T ss_pred CCCCCCCEEEEEccCCC--HH--------HHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhh
Confidence 56778999999999999 55 5566654 2247999999 3678889998752 2
Q ss_pred CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++.+||+|++... .......++..+.++|||||+|++..
T Consensus 138 l~~~~D~i~~d~~-----~p~~~~~~L~~~~r~LKpGG~lvI~v 176 (226)
T PRK04266 138 VVEKVDVIYQDVA-----QPNQAEIAIDNAEFFLKDGGYLLLAI 176 (226)
T ss_pred ccccCCEEEECCC-----ChhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 2367999986432 22233456889999999999999963
No 80
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.03 E-value=1.8e-09 Score=99.15 Aligned_cols=92 Identities=20% Similarity=0.215 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCCCCcee
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVELPEKVD 110 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fD 110 (252)
....+|||+|||+| .+ +..+++.++ .+++++|+ ....++.+|+... .+++||
T Consensus 195 ~~~g~VLDlGCG~G--~l--------s~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~-~~~~fD 263 (342)
T PRK09489 195 HTKGKVLDVGCGAG--VL--------SAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD-IKGRFD 263 (342)
T ss_pred cCCCeEEEeccCcC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc-cCCCcc
Confidence 34568999999999 77 777776543 57999999 1345667776543 347899
Q ss_pred EEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 111 IIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 111 lIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|+|++.+|... .......++..+.+.|+|||.|++..+.
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 999988655422 2345789999999999999999987654
No 81
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.03 E-value=1.5e-09 Score=98.93 Aligned_cols=103 Identities=19% Similarity=0.075 Sum_probs=76.5
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcc
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNK 99 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d 99 (252)
+...+.+.....++.+|||+||||| .+ ...++..+ .+++|+|+ .++.++++|
T Consensus 170 la~~~~~l~~~~~g~~vLDp~cGtG--~~--------lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D 238 (329)
T TIGR01177 170 LARAMVNLARVTEGDRVLDPFCGTG--GF--------LIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGD 238 (329)
T ss_pred HHHHHHHHhCCCCcCEEEECCCCCC--HH--------HHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecc
Confidence 4445555456788899999999999 55 55555555 57999999 336889999
Q ss_pred ccccCCC-CceeEEEeccccccc---C---ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 100 IENVELP-EKVDIIVSEWMGFYL---L---HESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 100 ~~~~~~~-~~fDlIv~~~~~~~l---~---~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.+++.+ ++||+|++++..... . .......++..+.++|+|||++++..++
T Consensus 239 ~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 239 ATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred hhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 9998775 789999997532111 1 1123578999999999999999988765
No 82
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.01 E-value=2.2e-09 Score=92.00 Aligned_cols=86 Identities=20% Similarity=0.063 Sum_probs=63.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVEL 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~ 105 (252)
....++.+|||+|||+| .+ +..+++... .+|+++|+ .++.++.+|+.....
T Consensus 73 l~~~~~~~VLDiG~GsG--~~--------a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSG--YQ--------AAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred hCCCCcCEEEEECCCcc--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc
Confidence 45678899999999999 65 556665422 35999998 468899999876543
Q ss_pred C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
. .+||+|++...... +...+.+.|+|||+|++...
T Consensus 143 ~~~~fD~Ii~~~~~~~---------~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 143 PLAPYDRIYVTAAGPK---------IPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ccCCCCEEEEcCCccc---------ccHHHHHhcCcCcEEEEEEc
Confidence 3 68999998543222 23456788999999998654
No 83
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.3e-09 Score=91.93 Aligned_cols=90 Identities=20% Similarity=0.124 Sum_probs=64.8
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEEcccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQNKIE 101 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~~d~~ 101 (252)
+.......++.+|||+|||+| .+ +..+++. +. .+|+++|+ .++.++++|..
T Consensus 68 ~~~~l~~~~g~~VLdIG~GsG--~~--------t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~ 137 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTGSG--YH--------AAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGT 137 (212)
T ss_pred HHHHcCCCCcCEEEEECCccc--HH--------HHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcc
Confidence 333345678999999999999 55 5555553 22 47999999 46899999987
Q ss_pred ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
....+ ++||+|++...... +...+.+.|+|||+|++...
T Consensus 138 ~~~~~~~~fD~I~~~~~~~~---------~~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 138 LGYEENAPYDRIYVTAAGPD---------IPKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred cCCCcCCCcCEEEECCCccc---------chHHHHHhhCCCcEEEEEEc
Confidence 66544 78999998543221 22345678999999988653
No 84
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.01 E-value=2.1e-09 Score=98.11 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------------CceEEEEccc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------------LILEVIQNKI 100 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------------~~i~~~~~d~ 100 (252)
.++.+|||||||.|+.+. -+ ...+...++|+|+ -...|+.+|.
T Consensus 61 ~~~~~VLDl~CGkGGDL~---------Kw-~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~ 130 (331)
T PF03291_consen 61 RPGLTVLDLCCGKGGDLQ---------KW-QKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADC 130 (331)
T ss_dssp TTT-EEEEET-TTTTTHH---------HH-HHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTT
T ss_pred CCCCeEEEecCCCchhHH---------HH-HhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccc
Confidence 378999999999997665 22 2234678999999 2345677777
Q ss_pred cccC------CC-CceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 101 ENVE------LP-EKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 101 ~~~~------~~-~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.... .+ .+||+|-|..++|+.. .......+|..+...|+|||+|+.+.+.
T Consensus 131 f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 131 FSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp CCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 5431 12 4899999988777665 5556778999999999999999988764
No 85
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.98 E-value=2.7e-09 Score=93.72 Aligned_cols=87 Identities=26% Similarity=0.277 Sum_probs=59.9
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEc-cccccCCC-CceeEEEec
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQN-KIENVELP-EKVDIIVSE 115 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~-d~~~~~~~-~~fDlIv~~ 115 (252)
..++.+|||+|||+| .+ +..+++.|+.+|+|+|+ .++..... +...+... .+||+|+++
T Consensus 117 ~~~~~~VLDiGcGsG--~l--------~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvan 186 (250)
T PRK00517 117 VLPGKTVLDVGCGSG--IL--------AIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVAN 186 (250)
T ss_pred cCCCCEEEEeCCcHH--HH--------HHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEc
Confidence 467899999999999 77 77777777767999999 11110000 00111111 269999986
Q ss_pred ccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
... ..+..++..+.++|+|||+++++..
T Consensus 187 i~~------~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 187 ILA------NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred CcH------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 431 2356788899999999999999754
No 86
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.98 E-value=3.6e-09 Score=89.56 Aligned_cols=91 Identities=20% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC------------------CceEEEEcccccc
Q psy9773 44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY------------------LILEVIQNKIENV 103 (252)
Q Consensus 44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~------------------~~i~~~~~d~~~~ 103 (252)
.....++.+|||+|||+| .+ +..+++. + ..+|+++|+ .++.++.+|+.+.
T Consensus 35 ~l~~~~~~~vlDlG~GtG--~~--------s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~ 104 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTG--SV--------TVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI 104 (198)
T ss_pred HcCCCCcCEEEEeCCcCC--HH--------HHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh
Confidence 356778899999999999 66 6666543 2 257999999 3577888888764
Q ss_pred CC--CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 104 EL--PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 104 ~~--~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.. .+.||+|++.. +...+..++..+.++|+|||++++....
T Consensus 105 l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 105 LFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred HhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 22 26899998833 1245778999999999999999986543
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.98 E-value=1.7e-09 Score=91.47 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC---CC-
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE---LP- 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~~- 106 (252)
.+.+|||||||+| .+ +..++.. +..+++|+|+ .++.++++|+..+. ++
T Consensus 16 ~~~~ilDiGcG~G--~~--------~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~ 85 (194)
T TIGR00091 16 KAPLHLEIGCGKG--RF--------LIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPD 85 (194)
T ss_pred CCceEEEeCCCcc--HH--------HHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCC
Confidence 4569999999999 55 4455553 3358999999 47899999998753 33
Q ss_pred CceeEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+++|.|++++...+.. |.. ....++..+.++|+|||.|++.+..
T Consensus 86 ~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 86 GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDN 134 (194)
T ss_pred CceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCC
Confidence 5899998854322110 100 1257899999999999999987643
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=4.4e-09 Score=76.61 Aligned_cols=84 Identities=25% Similarity=0.259 Sum_probs=66.4
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--CCceeEE
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--PEKVDII 112 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~~~fDlI 112 (252)
+|||+|||+| .+ +..++..+..+++++|. .++.++.+|+.+... .++||+|
T Consensus 1 ~ildig~G~G--~~--------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTG--AL--------ALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVI 70 (107)
T ss_pred CeEEEcCCcc--HH--------HHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEE
Confidence 5899999999 55 45555444568999998 467888888888764 3789999
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
++..+.+++ ......++..+.+.|+|||++++.
T Consensus 71 ~~~~~~~~~--~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 71 ISDPPLHHL--VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEccceeeh--hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 997765542 467889999999999999999886
No 89
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.94 E-value=6.1e-09 Score=88.50 Aligned_cols=97 Identities=19% Similarity=0.115 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC-CceeE
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP-EKVDI 111 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~-~~fDl 111 (252)
..+.+.| ....++..|.|+|||.+ .+ +.... ...+|...|. .+-.++.+|+.++|++ +++|+
T Consensus 61 d~iI~~l---~~~~~~~viaD~GCGdA--~l--------a~~~~--~~~~V~SfDLva~n~~Vtacdia~vPL~~~svDv 125 (219)
T PF05148_consen 61 DVIIEWL---KKRPKSLVIADFGCGDA--KL--------AKAVP--NKHKVHSFDLVAPNPRVTACDIANVPLEDESVDV 125 (219)
T ss_dssp HHHHHHH---CTS-TTS-EEEES-TT---HH--------HHH----S---EEEEESS-SSTTEEES-TTS-S--TT-EEE
T ss_pred HHHHHHH---HhcCCCEEEEECCCchH--HH--------HHhcc--cCceEEEeeccCCCCCEEEecCccCcCCCCceeE
Confidence 4455555 34556689999999999 55 32221 1236999999 5556888999999998 89999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|+...+-.. ++..++.++.|+|||||.|.+....
T Consensus 126 ~VfcLSLMGT----n~~~fi~EA~RvLK~~G~L~IAEV~ 160 (219)
T PF05148_consen 126 AVFCLSLMGT----NWPDFIREANRVLKPGGILKIAEVK 160 (219)
T ss_dssp EEEES---SS-----HHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred EEEEhhhhCC----CcHHHHHHHHheeccCcEEEEEEec
Confidence 9985543332 7889999999999999999998765
No 90
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.94 E-value=8.2e-09 Score=86.27 Aligned_cols=94 Identities=20% Similarity=0.139 Sum_probs=74.1
Q ss_pred HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEcccc
Q psy9773 40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQNKIE 101 (252)
Q Consensus 40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~d~~ 101 (252)
..+......++.+++|+||||| .+ +..++..++ .+|+|+|. +++.++.+++-
T Consensus 25 l~ls~L~~~~g~~l~DIGaGtG--si--------~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap 94 (187)
T COG2242 25 LTLSKLRPRPGDRLWDIGAGTG--SI--------TIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP 94 (187)
T ss_pred HHHHhhCCCCCCEEEEeCCCcc--HH--------HHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence 3333356789999999999999 66 666665444 58999997 78999999998
Q ss_pred ccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 102 NVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 102 ~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
....+ .+||.|+.... ..+..+|..+...|+|||+++....+
T Consensus 95 ~~L~~~~~~daiFIGGg-------~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 95 EALPDLPSPDAIFIGGG-------GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred HhhcCCCCCCEEEECCC-------CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 77444 47999987332 46788999999999999999998765
No 91
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.92 E-value=5.7e-09 Score=94.15 Aligned_cols=92 Identities=13% Similarity=0.049 Sum_probs=62.5
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------------------CceEEEEcccccc-CC
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------------------LILEVIQNKIENV-EL 105 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------------------~~i~~~~~d~~~~-~~ 105 (252)
..++.+|||+||||| .. +..+++.. ..+++++|+ .++.++++|+.+. +.
T Consensus 61 ~~~~~~iLELGcGtG--~~--------t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~ 130 (301)
T TIGR03438 61 TGAGCELVELGSGSS--RK--------TRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLAL 130 (301)
T ss_pred hCCCCeEEecCCCcc--hh--------HHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhh
Confidence 346789999999999 54 44444442 257999999 1355689999863 33
Q ss_pred CCce----e-EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 PEKV----D-IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 ~~~f----D-lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+..+ . ++++....++ ....+...+|+.+++.|+|||+|++...
T Consensus 131 ~~~~~~~~~~~~~~gs~~~~-~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 131 PPEPAAGRRLGFFPGSTIGN-FTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred hcccccCCeEEEEecccccC-CCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 3222 2 3333233333 3455788999999999999999998654
No 92
>PTZ00146 fibrillarin; Provisional
Probab=98.91 E-value=1.8e-08 Score=90.19 Aligned_cols=101 Identities=22% Similarity=0.192 Sum_probs=71.2
Q ss_pred HHHHHHHHHhC---CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC---------------Cce
Q psy9773 34 NEAYRAAICDN---PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY---------------LIL 93 (252)
Q Consensus 34 ~~~~~~~l~~~---~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~---------------~~i 93 (252)
.+.+..+|..- ..+.++.+|||||||+| .+ +..++.. + ...|+++|+ .+|
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G--~~--------t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI 183 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASG--TT--------VSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNI 183 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCC--HH--------HHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCC
Confidence 34455555332 35678899999999999 66 6666664 3 247999987 578
Q ss_pred EEEEccccccC----CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 94 EVIQNKIENVE----LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 94 ~~~~~d~~~~~----~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.++.+|+.... +..+||+|+++.. . ..+...++.++.++|||||.|++...
T Consensus 184 ~~I~~Da~~p~~y~~~~~~vDvV~~Dva---~--pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 184 VPIIEDARYPQKYRMLVPMVDVIFADVA---Q--PDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred EEEECCccChhhhhcccCCCCEEEEeCC---C--cchHHHHHHHHHHhccCCCEEEEEEe
Confidence 89999986431 1267999999653 1 22445566678899999999999543
No 93
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.91 E-value=1.1e-08 Score=86.36 Aligned_cols=97 Identities=20% Similarity=0.197 Sum_probs=67.9
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEc
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQN 98 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~ 98 (252)
.+..+.......++.+|||+|||+| .+ +..+++. +..+|+++|+ .+++++.+
T Consensus 28 v~~~l~~~l~~~~~~~VLDiG~G~G--~~--------~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~ 97 (196)
T PRK07402 28 VRLLLISQLRLEPDSVLWDIGAGTG--TI--------PVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG 97 (196)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCC--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 3333444445678899999999999 55 5555543 2358999999 35788888
Q ss_pred ccccc-C-CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 99 KIENV-E-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 99 d~~~~-~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|+... . ....+|.++... ...+..++..+.++|+|||+|++....
T Consensus 98 d~~~~~~~~~~~~d~v~~~~-------~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 98 SAPECLAQLAPAPDRVCIEG-------GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred chHHHHhhCCCCCCEEEEEC-------CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 88652 1 123467765421 135678999999999999999998764
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.90 E-value=1.3e-08 Score=86.99 Aligned_cols=88 Identities=16% Similarity=0.081 Sum_probs=64.0
Q ss_pred HhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC
Q psy9773 42 CDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE 104 (252)
Q Consensus 42 ~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~ 104 (252)
.......++.+|||+|||+| .+ +..++..+ .+++++|+ .++.++.+|.....
T Consensus 71 ~~~l~~~~~~~VLeiG~GsG--~~--------t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 71 TELLELKPGDRVLEIGTGSG--YQ--------AAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred HHhcCCCCCCEEEEECCCcc--HH--------HHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 33345678899999999999 55 55666654 47999998 35889999986543
Q ss_pred CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.+ ++||+|++...... +...+.+.|+|||++++...
T Consensus 140 ~~~~~fD~I~~~~~~~~---------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 PAYAPFDRILVTAAAPE---------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CcCCCcCEEEEccCchh---------hhHHHHHhcCCCcEEEEEEc
Confidence 33 78999998553222 23456789999999998764
No 95
>PRK14968 putative methyltransferase; Provisional
Probab=98.89 E-value=1.4e-08 Score=84.23 Aligned_cols=92 Identities=24% Similarity=0.262 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------Cc--eEEEEccccccCCCCc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LI--LEVIQNKIENVELPEK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~--i~~~~~d~~~~~~~~~ 108 (252)
.++.+|||+|||+| .+ +..++..+ .+++++|+ .+ +.++++|+.+...+++
T Consensus 22 ~~~~~vLd~G~G~G--~~--------~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 90 (188)
T PRK14968 22 KKGDRVLEVGTGSG--IV--------AIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDK 90 (188)
T ss_pred cCCCEEEEEccccC--HH--------HHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccC
Confidence 67789999999999 56 66666664 67999999 11 7788888766543468
Q ss_pred eeEEEeccccccc------------------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 109 VDIIVSEWMGFYL------------------LHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 109 fDlIv~~~~~~~l------------------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
||+|+++...... .+...+..++..+.++|+|||.+++..++
T Consensus 91 ~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 91 FDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 9999986532110 01223567899999999999999887654
No 96
>KOG3045|consensus
Probab=98.89 E-value=1.5e-08 Score=88.29 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC-CceeEEEecccccccC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~ 122 (252)
.......|.|+|||-+ .+ +. +. ..+|++.|+ .+-+++.+|+.++|++ ++.|++|+...+-
T Consensus 177 ~r~~~~vIaD~GCGEa--ki--------A~---~~-~~kV~SfDL~a~~~~V~~cDm~~vPl~d~svDvaV~CLSLM--- 239 (325)
T KOG3045|consen 177 RRPKNIVIADFGCGEA--KI--------AS---SE-RHKVHSFDLVAVNERVIACDMRNVPLEDESVDVAVFCLSLM--- 239 (325)
T ss_pred hCcCceEEEecccchh--hh--------hh---cc-ccceeeeeeecCCCceeeccccCCcCccCcccEEEeeHhhh---
Confidence 3456679999999999 43 21 22 357999999 6677899999999988 8999998844322
Q ss_pred ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 123 HESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 123 ~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
. .++..++.+++|+|+|||.+++....
T Consensus 240 g-tn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 240 G-TNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred c-ccHHHHHHHHHHHhccCceEEEEehh
Confidence 2 37889999999999999999998754
No 97
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.89 E-value=2e-08 Score=87.39 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=74.0
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------CceEEEEccccccCCCCce
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------~~i~~~~~d~~~~~~~~~f 109 (252)
+..........+|+|||+|+| .+ +..+++. +..+++..|. .+++++.+|+. .++|. +
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G--~~--------~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f-~~~P~-~ 159 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSG--HF--------AIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFF-DPLPV-A 159 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTS--HH--------HHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TT-TCCSS-E
T ss_pred hhccccccCccEEEeccCcch--HH--------HHHHHHHCCCCcceeeccHhhhhccccccccccccccHH-hhhcc-c
Confidence 333345556679999999999 55 5555553 3357999999 79999999999 66666 9
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCC--eEEEeeccc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPE--GVMYPYKCI 150 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkpg--G~lv~~~~~ 150 (252)
|+|+..+++|... ..+...+|+++++.|+|| |+|++....
T Consensus 160 D~~~l~~vLh~~~-d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 160 DVYLLRHVLHDWS-DEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp SEEEEESSGGGS--HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred cceeeehhhhhcc-hHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 9999999888764 447899999999999999 999998865
No 98
>KOG2899|consensus
Probab=98.88 E-value=3.5e-09 Score=91.42 Aligned_cols=93 Identities=17% Similarity=0.236 Sum_probs=64.9
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC---------------------------------
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------------------- 90 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------------------- 90 (252)
...+.+..+|||||.+| .+ +..+++ .++..+.|+||
T Consensus 54 ~~~f~~~~~LDIGCNsG--~l--------t~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~ 123 (288)
T KOG2899|consen 54 KDWFEPKQALDIGCNSG--FL--------TLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ 123 (288)
T ss_pred ccccCcceeEeccCCcc--hh--------HHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence 45577889999999999 77 777777 67788999999
Q ss_pred --------------------------CceEEEEccccccCCCCceeEEEecccccc--cC-ChhhHHHHHHHHhccccCC
Q psy9773 91 --------------------------LILEVIQNKIENVELPEKVDIIVSEWMGFY--LL-HESMIDSVIFARDKFLKPE 141 (252)
Q Consensus 91 --------------------------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~--l~-~~~~~~~~l~~l~~~Lkpg 141 (252)
.++.+...|+... ....||+|+|..+.-+ +. +..-+..+|+++.++|.||
T Consensus 124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred cccccccccccccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 0111111111100 1157999999443322 22 4456899999999999999
Q ss_pred eEEEeec
Q psy9773 142 GVMYPYK 148 (252)
Q Consensus 142 G~lv~~~ 148 (252)
|+|++.-
T Consensus 203 GiLvvEP 209 (288)
T KOG2899|consen 203 GILVVEP 209 (288)
T ss_pred cEEEEcC
Confidence 9999864
No 99
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.88 E-value=6.3e-09 Score=87.70 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=59.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccc-c-CCC-CceeEEEe
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIEN-V-ELP-EKVDIIVS 114 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~-~-~~~-~~fDlIv~ 114 (252)
.++.+|||+|||+| .+ +..++......++|+|+ .++.++++|+.. + +++ ++||+|++
T Consensus 12 ~~~~~iLDiGcG~G--~~--------~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 12 PPGSRVLDLGCGDG--EL--------LALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCCEEEEeCCCCC--HH--------HHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEE
Confidence 46789999999999 55 44554443356899998 467889999876 3 233 78999999
Q ss_pred cccccccCChhhHHHHHHHHhccccC
Q psy9773 115 EWMGFYLLHESMIDSVIFARDKFLKP 140 (252)
Q Consensus 115 ~~~~~~l~~~~~~~~~l~~l~~~Lkp 140 (252)
+.+++++ .++..++.++.+.+++
T Consensus 82 ~~~l~~~---~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 82 SQTLQAT---RNPEEILDEMLRVGRH 104 (194)
T ss_pred hhHhHcC---cCHHHHHHHHHHhCCe
Confidence 8876666 6677888888776554
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.87 E-value=1.3e-08 Score=94.45 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=66.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEcccccc--CCC-
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENV--ELP- 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~--~~~- 106 (252)
..+.++||||||+| .+ ...++.. +...++|+|+ .++.++++|+..+ .++
T Consensus 121 ~~~p~vLEIGcGsG--~~--------ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~ 190 (390)
T PRK14121 121 NQEKILIEIGFGSG--RH--------LLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS 190 (390)
T ss_pred CCCCeEEEEcCccc--HH--------HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence 45679999999999 44 4455553 3368999999 5899999999765 233
Q ss_pred CceeEEEecccccccCChhh------HHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESM------IDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~------~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+++|.|+++.. .+|... ...++..+.|+|+|||.+.+.+-
T Consensus 191 ~s~D~I~lnFP---dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 191 NSVEKIFVHFP---VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred CceeEEEEeCC---CCccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 88999988543 222221 25789999999999999998764
No 101
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.86 E-value=1.9e-08 Score=90.09 Aligned_cols=92 Identities=22% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f 109 (252)
++.+|||+|||+| .+ +..++... ..+++|+|+ .++.++++|+......++|
T Consensus 121 ~~~~vLDlG~GsG--~i--------~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~f 190 (284)
T TIGR03533 121 PVKRILDLCTGSG--CI--------AIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKY 190 (284)
T ss_pred CCCEEEEEeCchh--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCc
Confidence 4579999999999 55 55666543 357999999 3588999998654323579
Q ss_pred eEEEeccccc----------ccCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 110 DIIVSEWMGF----------YLLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 110 DlIv~~~~~~----------~l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|+|++++-.. ...++ .....++..+.++|+|||++++....
T Consensus 191 D~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 191 DLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred cEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9999964210 00111 12467888899999999999988764
No 102
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.84 E-value=3e-08 Score=86.15 Aligned_cols=91 Identities=23% Similarity=0.140 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccCCCCcee
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVELPEKVD 110 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~fD 110 (252)
.+.+|||+|||+| .+ +..++.. +..+++|+|+ .++.++++|+......++||
T Consensus 87 ~~~~ilDig~G~G--~~--------~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD 156 (251)
T TIGR03534 87 GPLRVLDLGTGSG--AI--------ALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFD 156 (251)
T ss_pred CCCeEEEEeCcHh--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCcee
Confidence 4569999999999 55 4555553 2358999998 35889999987643347899
Q ss_pred EEEeccccccc------C-----C------------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 111 IIVSEWMGFYL------L-----H------------ESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 111 lIv~~~~~~~l------~-----~------------~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+|++++..... . + ...+..++..+.++|+|||.+++...
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~ 218 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG 218 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 99996532210 0 0 01234788899999999999998753
No 103
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.84 E-value=2.3e-08 Score=88.28 Aligned_cols=106 Identities=20% Similarity=0.119 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEE
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEV 95 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~ 95 (252)
+..+...+.......++.+|||+|||+| .+ +..++... ..+++|+|+ .++.+
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG--~~--------~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~ 162 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSG--AI--------ALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEF 162 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHH--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEE
Confidence 3444444443334556789999999999 55 45555533 357999998 26888
Q ss_pred EEccccccCCCCceeEEEeccccccc------C-----------------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 96 IQNKIENVELPEKVDIIVSEWMGFYL------L-----------------HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 96 ~~~d~~~~~~~~~fDlIv~~~~~~~l------~-----------------~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+.+|+.....+++||+|++++-.... . ....+..++..+.++|+|||++++...
T Consensus 163 ~~~d~~~~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 163 LQGDWFEPLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred EEccccCcCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 99988654334789999995421100 0 012346788888899999999999653
No 104
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.84 E-value=9.1e-10 Score=94.41 Aligned_cols=125 Identities=18% Similarity=0.170 Sum_probs=78.2
Q ss_pred hhhHhhhhccHHHHHHHhccHHH-HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEee
Q psy9773 11 EEEYFESYTDLEVHKLMLDDTVR-NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQ 89 (252)
Q Consensus 11 ~~~yf~~y~~~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD 89 (252)
..-.|+.|...=-+...-+=... ...+...|.. ....+=+++||+||||| +. ...+... +.+++|+|
T Consensus 87 Ve~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~-~~~g~F~~~lDLGCGTG--L~--------G~~lR~~-a~~ltGvD 154 (287)
T COG4976 87 VETLFDQYAERFDHILVDKLGYSVPELLAEMIGK-ADLGPFRRMLDLGCGTG--LT--------GEALRDM-ADRLTGVD 154 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh-ccCCccceeeecccCcC--cc--------cHhHHHH-HhhccCCc
Confidence 44577777763222211110111 2333443432 33333479999999999 76 5555544 35678888
Q ss_pred C------------CceEEEEccccccC---CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 90 Y------------LILEVIQNKIENVE---LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 90 ~------------~~i~~~~~d~~~~~---~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ .--++.++++..+. .+.+||+|++..++.++ ..+..++..+..+|+|||.|.|+.-+
T Consensus 155 iS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl---G~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 155 ISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL---GALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh---cchhhHHHHHHHhcCCCceEEEEecc
Confidence 7 11123444544332 23789999998876666 88999999999999999999998754
No 105
>KOG1271|consensus
Probab=98.84 E-value=9.4e-09 Score=85.44 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=63.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC------------------CceEEEEccccccCC-CCcee
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY------------------LILEVIQNKIENVEL-PEKVD 110 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~------------------~~i~~~~~d~~~~~~-~~~fD 110 (252)
.+|||||||.| .+ ...+++-|.. ..+|+|. +.|+|.+.|+.+..+ ++.||
T Consensus 69 ~~VlDLGtGNG--~~--------L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfd 138 (227)
T KOG1271|consen 69 DRVLDLGTGNG--HL--------LFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFD 138 (227)
T ss_pred cceeeccCCch--HH--------HHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccccccee
Confidence 49999999999 66 4445555543 3777776 349999999998644 37788
Q ss_pred EEEecccccccC-----ChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 111 IIVSEWMGFYLL-----HESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 111 lIv~~~~~~~l~-----~~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
+|+--..+..+. ....+...+..+.++|+|||+|++.+++.
T Consensus 139 lvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 139 LVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred EEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 886533221111 11234667888899999999999998763
No 106
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.83 E-value=1.8e-08 Score=85.82 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=65.2
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--CCc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--PEK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~~~ 108 (252)
..+.+|||+|||+| .+ ++.++..++.+|+++|. .++.++++|+..... ..+
T Consensus 52 ~~~~~vLDl~~GsG--~l--------~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~ 121 (199)
T PRK10909 52 IVDARCLDCFAGSG--AL--------GLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP 121 (199)
T ss_pred cCCCEEEEcCCCcc--HH--------HHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence 56789999999999 77 66555556778999998 468899999876432 256
Q ss_pred eeEEEecccccccCChhhHHHHHHHHh--ccccCCeEEEeecccc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCIL 151 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~--~~LkpgG~lv~~~~~~ 151 (252)
||+|++++- +.- .....++..+. .+|+|+|++|+++...
T Consensus 122 fDlV~~DPP-y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 122 HNVVFVDPP-FRK---GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred ceEEEECCC-CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 999999875 211 22334444443 4589999999998763
No 107
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=2.7e-08 Score=88.88 Aligned_cols=102 Identities=22% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------------CceEEEEc
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------------LILEVIQN 98 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------------~~i~~~~~ 98 (252)
-.+.|+.......+.+|||+|||.| .+ +..+++..+ .+++.+|+ .+..++..
T Consensus 146 GS~lLl~~l~~~~~~~vlDlGCG~G--vl--------g~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s 215 (300)
T COG2813 146 GSRLLLETLPPDLGGKVLDLGCGYG--VL--------GLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS 215 (300)
T ss_pred HHHHHHHhCCccCCCcEEEeCCCcc--HH--------HHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe
Confidence 3444555455555669999999999 88 888887654 68999999 22234555
Q ss_pred cccccCCCCceeEEEecccccccCChh--hHHHHHHHHhccccCCeEEEeecc
Q psy9773 99 KIENVELPEKVDIIVSEWMGFYLLHES--MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 99 d~~~~~~~~~fDlIv~~~~~~~l~~~~--~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+..--. ++||+|+|++-+|--.... -..+++....+.|++||.|.+...
T Consensus 216 ~~~~~v~-~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 216 NLYEPVE-GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccccccc-ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 5544333 4899999988654322111 245899999999999999998775
No 108
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=2.9e-08 Score=89.83 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=64.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCCCceeE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELPEKVDI 111 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDl 111 (252)
.+|||+|||+| .+ +..++... ..+|+++|+ .++.++++|+.+...+++||+
T Consensus 135 ~~VLDlG~GsG--~i--------ai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDl 204 (307)
T PRK11805 135 TRILDLCTGSG--CI--------AIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDL 204 (307)
T ss_pred CEEEEEechhh--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccE
Confidence 68999999999 55 55555543 357999999 358899999865433368999
Q ss_pred EEeccccc----------ccCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 112 IVSEWMGF----------YLLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 112 Iv~~~~~~----------~l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|++++-.. ...+. .....++..+.++|+|||++++....
T Consensus 205 IvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 205 IVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred EEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 99964110 00011 13467889999999999999997653
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=98.81 E-value=3.7e-08 Score=87.40 Aligned_cols=103 Identities=17% Similarity=0.072 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------CceEEEEccccccCCCCceeEEEec
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------LILEVIQNKIENVELPEKVDIIVSE 115 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlIv~~ 115 (252)
.+.+|||+|||+| .+ +..++.. +..+++++|+ .++.++++|+..+....+||+|+++
T Consensus 64 ~~grVLDLGcGsG--il--------sl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIG--RL--------SFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCC--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence 4579999999999 65 5555443 2358999999 4688999999987655789999997
Q ss_pred ccccccCChh--h---------------HHHHHHHHhccccCCeEEEeecc--ccccCCCCChhH
Q psy9773 116 WMGFYLLHES--M---------------IDSVIFARDKFLKPEGVMYPYKC--ILHSAPSYSPEI 161 (252)
Q Consensus 116 ~~~~~l~~~~--~---------------~~~~l~~l~~~LkpgG~lv~~~~--~~~~~~~~~~~~ 161 (252)
+..+++.... . +..++.....+|+|+|.+++... .+|........+
T Consensus 134 PPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y 198 (279)
T PHA03411 134 PPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKY 198 (279)
T ss_pred CCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHH
Confidence 7654432211 1 35677778899999998866432 334444444443
No 110
>PRK00811 spermidine synthase; Provisional
Probab=98.81 E-value=1.5e-08 Score=90.67 Aligned_cols=93 Identities=15% Similarity=0.041 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC----------------------CceEEEEccccccC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY----------------------LILEVIQNKIENVE 104 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~----------------------~~i~~~~~d~~~~~ 104 (252)
..+++||+||||+| .+ +..+++. +..+|+++|+ ++++++.+|...+.
T Consensus 75 ~~p~~VL~iG~G~G--~~--------~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l 144 (283)
T PRK00811 75 PNPKRVLIIGGGDG--GT--------LREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV 144 (283)
T ss_pred CCCCEEEEEecCch--HH--------HHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH
Confidence 45689999999999 55 5555554 4568999999 35788999987763
Q ss_pred C--CCceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 L--PEKVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ~--~~~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
. .++||+|++.......+... ....++..+.+.|+|||++++...+
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 145 AETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred hhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 2 37899999965322221111 2367788999999999999987554
No 111
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.81 E-value=6.7e-08 Score=82.91 Aligned_cols=85 Identities=13% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEK 108 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~ 108 (252)
..++.+|||+|||+| .+ +..++..+. .++|+|+ .++.+..+|+... .++
T Consensus 61 ~~~~~~vLDvGcG~G--~~--------~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~ 127 (230)
T PRK07580 61 DLTGLRILDAGCGVG--SL--------SIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGR 127 (230)
T ss_pred CCCCCEEEEEeCCCC--HH--------HHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCC
Confidence 456789999999999 55 566666664 5999998 2578888884332 378
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
||+|++..++++++ .+.+..++..+.+++++++++.
T Consensus 128 fD~v~~~~~l~~~~-~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 128 FDTVVCLDVLIHYP-QEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred cCEEEEcchhhcCC-HHHHHHHHHHHHhhcCCeEEEE
Confidence 99999977765543 3367788888888775555443
No 112
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.81 E-value=3.5e-08 Score=88.24 Aligned_cols=90 Identities=26% Similarity=0.276 Sum_probs=64.3
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCCCceeE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELPEKVDI 111 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDl 111 (252)
.+|||+|||+| .+ +..++...+ .+++|+|+ .++.++++|+.......+||+
T Consensus 116 ~~vLDlG~GsG--~i--------~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDl 185 (284)
T TIGR00536 116 LHILDLGTGSG--CI--------ALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDI 185 (284)
T ss_pred CEEEEEeccHh--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccE
Confidence 69999999999 55 555555432 57999999 248899999876432248999
Q ss_pred EEecccc----------cccCCh------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 112 IVSEWMG----------FYLLHE------------SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 112 Iv~~~~~----------~~l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|++++-. ....+. ..+..++..+.++|+|||+|++....
T Consensus 186 IvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 186 IVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred EEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 9996311 000111 14667888899999999999998764
No 113
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.80 E-value=1.3e-08 Score=101.70 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccC--CC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVE--LP 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~--~~ 106 (252)
.++++|||+||||| .+ ++.++..|+.+|+++|+ .+++++++|+.++. ..
T Consensus 537 ~~g~rVLDlf~gtG--~~--------sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~ 606 (702)
T PRK11783 537 AKGKDFLNLFAYTG--TA--------SVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAR 606 (702)
T ss_pred cCCCeEEEcCCCCC--HH--------HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcC
Confidence 45789999999999 77 77888888878999999 25889999987653 23
Q ss_pred CceeEEEeccccccc--------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYL--------LHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l--------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++||+||+++-.+.- ....+...++..+.++|+|||+++++++.
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 689999996632211 11235677888889999999999987765
No 114
>PHA03412 putative methyltransferase; Provisional
Probab=98.79 E-value=3.3e-08 Score=85.93 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=65.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc----CCCcEEEeeC------------CceEEEEccccccCCCCceeEE
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV----HPLDHYAPQY------------LILEVIQNKIENVELPEKVDII 112 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~----g~~~v~gvD~------------~~i~~~~~d~~~~~~~~~fDlI 112 (252)
.+.+|||+|||+| .+ +..+++. +..+++++|+ .++.++.+|+....+.++||+|
T Consensus 49 ~~grVLDlG~GSG--~L--------alala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 49 TSGSVVDLCAGIG--GL--------SFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMA 118 (241)
T ss_pred CCCEEEEccChHH--HH--------HHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEE
Confidence 3679999999999 66 5555442 2347999999 4578999999877666789999
Q ss_pred EecccccccCC---------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 113 VSEWMGFYLLH---------ESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 113 v~~~~~~~l~~---------~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+++-.+-+.. ......++..+.++++||+.+++...
T Consensus 119 IsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 119 ISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred EECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 99775331211 11255688888888888888776543
No 115
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.79 E-value=3.9e-08 Score=91.99 Aligned_cols=107 Identities=19% Similarity=0.093 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------Cce
Q psy9773 31 TVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LIL 93 (252)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i 93 (252)
++.+..+...+.. ...++.+|||+|||+| .+ +..++. .+..+++|+|+ .++
T Consensus 235 RpeTE~LVe~aL~--~l~~~~rVLDLGcGSG--~I--------aiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV 302 (423)
T PRK14966 235 RPETEHLVEAVLA--RLPENGRVWDLGTGSG--AV--------AVTVALERPDAFVRASDISPPALETARKNAADLGARV 302 (423)
T ss_pred CccHHHHHHHhhh--ccCCCCEEEEEeChhh--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcE
Confidence 3445555555543 2345679999999999 55 555554 33467999999 368
Q ss_pred EEEEccccccCC--CCceeEEEecccccccC-----------------------ChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 94 EVIQNKIENVEL--PEKVDIIVSEWMGFYLL-----------------------HESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 94 ~~~~~d~~~~~~--~~~fDlIv~~~~~~~l~-----------------------~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.++++|+.+... .++||+|+|++-. .-. ....+..++..+.+.|+|||.+++..
T Consensus 303 ~fi~gDl~e~~l~~~~~FDLIVSNPPY-I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 303 EFAHGSWFDTDMPSEGKWDIIVSNPPY-IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred EEEEcchhccccccCCCccEEEECCCC-CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 899999876533 2679999997631 100 00124577777789999999998876
Q ss_pred cc
Q psy9773 149 CI 150 (252)
Q Consensus 149 ~~ 150 (252)
..
T Consensus 382 G~ 383 (423)
T PRK14966 382 GF 383 (423)
T ss_pred Cc
Confidence 43
No 116
>KOG2361|consensus
Probab=98.79 E-value=2.1e-08 Score=86.58 Aligned_cols=92 Identities=25% Similarity=0.293 Sum_probs=66.8
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCC-----CCce
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVEL-----PEKV 109 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~-----~~~f 109 (252)
+||++|||.|.+.+ .++...... -+++++|. .++.....|+..... ++++
T Consensus 74 ~ilEvGCGvGNtvf--------Pll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVF--------PLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccc--------hhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCcc
Confidence 89999999997666 444333221 46999999 344445556544421 1889
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
|+|++..++..++ ...+..++.+++++|||||.|++.....+
T Consensus 146 D~it~IFvLSAi~-pek~~~a~~nl~~llKPGG~llfrDYg~~ 187 (264)
T KOG2361|consen 146 DIITLIFVLSAIH-PEKMQSVIKNLRTLLKPGGSLLFRDYGRY 187 (264)
T ss_pred ceEEEEEEEeccC-hHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence 9999977766664 44688999999999999999999876433
No 117
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.78 E-value=5.2e-08 Score=91.96 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=69.1
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEccccccCC---
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENVEL--- 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~~~--- 105 (252)
...+|.+|||+|||+| .. +..++..+. .+|+++|+ .++.++++|+..+..
T Consensus 241 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~ 310 (427)
T PRK10901 241 APQNGERVLDACAAPG--GK--------TAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD 310 (427)
T ss_pred CCCCCCEEEEeCCCCC--hH--------HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence 4568899999999999 55 555555433 57999999 246789999987632
Q ss_pred CCceeEEEecccccc---c---------CChhh-------HHHHHHHHhccccCCeEEEeecccccc
Q psy9773 106 PEKVDIIVSEWMGFY---L---------LHESM-------IDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~---l---------~~~~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
.++||.|+++..... + .+..+ ...+|..+.++|+|||+|+.++++.+.
T Consensus 311 ~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~ 377 (427)
T PRK10901 311 GQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP 377 (427)
T ss_pred cCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 267999997442111 1 11111 246899999999999999998876443
No 118
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4e-08 Score=85.68 Aligned_cols=94 Identities=23% Similarity=0.270 Sum_probs=78.4
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------------------CceEEEEccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------------------LILEVIQNKI 100 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------------------~~i~~~~~d~ 100 (252)
|.....+.+|.+|||.|.|+| .+ +..+++ .|. .+|+.+|+ +++++..+|+
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG--~l--------t~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv 155 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSG--AL--------TAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV 155 (256)
T ss_pred HHHHcCCCCCCEEEEcccCch--HH--------HHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc
Confidence 444468999999999999999 77 677665 343 58999999 5588899999
Q ss_pred cccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 101 ~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.+...+..||.|+... +++..++..+.++|+|||.+++..++..
T Consensus 156 ~~~~~~~~vDav~LDm--------p~PW~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 156 REGIDEEDVDAVFLDL--------PDPWNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred cccccccccCEEEEcC--------CChHHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 9988778999997743 6899999999999999999999988643
No 119
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.77 E-value=2e-08 Score=85.93 Aligned_cols=90 Identities=19% Similarity=0.104 Sum_probs=63.4
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-Ccee
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP-EKVD 110 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~~fD 110 (252)
...+.||+|||.|+.+- -+....+..|-.+|. ...++.+..++++.++ ++||
T Consensus 55 ~~~~alDcGAGIGRVTk----------~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YD 124 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTK----------GLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYD 124 (218)
T ss_dssp --SEEEEET-TTTHHHH----------HTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EE
T ss_pred CcceEEecccccchhHH----------HHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEe
Confidence 34799999999995543 332223567888887 2356888899998765 7999
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+|++.|++.|+.+. ++..+|.++...|+|+|++++-.+
T Consensus 125 lIW~QW~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 125 LIWIQWCLGHLTDE-DLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp EEEEES-GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEehHhhccCCHH-HHHHHHHHHHHhCcCCcEEEEEec
Confidence 99999999998655 799999999999999999998665
No 120
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.77 E-value=2.1e-09 Score=101.33 Aligned_cols=150 Identities=14% Similarity=0.258 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCC--CCC--CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------CceEE--------
Q psy9773 35 EAYRAAICDNPNI--FAG--KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------LILEV-------- 95 (252)
Q Consensus 35 ~~~~~~l~~~~~~--~~~--~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------~~i~~-------- 95 (252)
..|...|...... ..| +++||+|||+| ++ +..+..++ |+.+-+ ..++|
T Consensus 99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~a--SF--------~a~l~~r~---V~t~s~a~~d~~~~qvqfaleRGvpa 165 (506)
T PF03141_consen 99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVA--SF--------GAYLLERN---VTTMSFAPNDEHEAQVQFALERGVPA 165 (506)
T ss_pred HHHHHHHHHHhhccccCCceEEEEeccceee--hh--------HHHHhhCC---ceEEEcccccCCchhhhhhhhcCcch
Confidence 3444444443333 223 57899999999 77 66666654 333333 11222
Q ss_pred EEcc--ccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCChhH-----------
Q psy9773 96 IQNK--IENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI----------- 161 (252)
Q Consensus 96 ~~~d--~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~----------- 161 (252)
+.+- ...+|++ ++||+|+|.- +.+.+...-..+|.++.|+|+|||+++.+.+..+.. .....
T Consensus 166 ~~~~~~s~rLPfp~~~fDmvHcsr--c~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r--~~~~~~~~~~~~~~l~ 241 (506)
T PF03141_consen 166 MIGVLGSQRLPFPSNAFDMVHCSR--CLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQR--TDEDLEEEWNAMEDLA 241 (506)
T ss_pred hhhhhccccccCCccchhhhhccc--ccccchhcccceeehhhhhhccCceEEecCCccccc--chHHHHHHHHHHHHHH
Confidence 2122 3566777 8999999944 334555555678999999999999999999886611 11112
Q ss_pred -HHHhhhhhCCccccchhHHhhhhhhhHHHHHHhh-hhhhHHHHHh
Q psy9773 162 -FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKK-NKEEEEEEEE 205 (252)
Q Consensus 162 -~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 205 (252)
.-.|..+.--+ .-.++.+|...+|+.+++. ..++.|++.+
T Consensus 242 ~~lCW~~va~~~----~~aIwqKp~~~~Cy~~r~~~~~pplC~~~~ 283 (506)
T PF03141_consen 242 KSLCWKKVAEKG----DTAIWQKPTNNSCYQKRKPGKSPPLCDSSD 283 (506)
T ss_pred HHHHHHHheeeC----CEEEEeccCCchhhhhccCCCCCCCCCCCC
Confidence 22343332211 1447888998899999887 8899997543
No 121
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.77 E-value=2.1e-08 Score=93.76 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------C--ceEEEEccccccCC---
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------L--ILEVIQNKIENVEL--- 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~--~i~~~~~d~~~~~~--- 105 (252)
.++++|||+|||+| .+ ++.++..|+.+|+++|+ . +++++++|+.++..
T Consensus 219 ~~g~rVLDlfsgtG--~~--------~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~ 288 (396)
T PRK15128 219 VENKRVLNCFSYTG--GF--------AVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR 288 (396)
T ss_pred cCCCeEEEeccCCC--HH--------HHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH
Confidence 45789999999999 55 55555566778999999 1 57899999987631
Q ss_pred --CCceeEEEecccccccCCh-------hhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 106 --PEKVDIIVSEWMGFYLLHE-------SMIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 106 --~~~fDlIv~~~~~~~l~~~-------~~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
.++||+|++++-. +.... ..+..++..+.++|+|||+|+..+++.+.
T Consensus 289 ~~~~~fDlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 289 DRGEKFDVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred hcCCCCCEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 2579999997643 22222 23556666778999999999987765444
No 122
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=6e-08 Score=92.05 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVELP 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~ 106 (252)
...+|.+|||+|||+|+ . +..++.. +..+|+|+|+ .++.++++|+..+..+
T Consensus 247 ~~~~g~~VLDlgaG~G~--k--------t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~ 316 (445)
T PRK14904 247 NPQPGSTVLDLCAAPGG--K--------STFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPE 316 (445)
T ss_pred CCCCCCEEEEECCCCCH--H--------HHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccC
Confidence 45678999999999994 4 4444432 2247999999 4688999999887645
Q ss_pred CceeEEEecccc---cccC---------Chhh-------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773 107 EKVDIIVSEWMG---FYLL---------HESM-------IDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 107 ~~fDlIv~~~~~---~~l~---------~~~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
++||+|++..-. ..+. ...+ ...+|..+.++|+|||+|+.++++..
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 789999973211 1110 1111 23689999999999999999988744
No 123
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=4.4e-08 Score=92.58 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=69.1
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~-- 104 (252)
...+|.+|||+|||+|+.+ ..++.. +..+|+++|+ .++.++++|+..++
T Consensus 234 ~~~~g~~VLD~cagpGgkt----------~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~ 303 (431)
T PRK14903 234 ELEPGLRVLDTCAAPGGKT----------TAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEY 303 (431)
T ss_pred CCCCCCEEEEeCCCccHHH----------HHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhh
Confidence 4678899999999999544 344432 2357999999 45789999998775
Q ss_pred CCCceeEEEecccc---cccCChh----------------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 105 LPEKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 105 ~~~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
..++||.|+++.-. ..+...+ ....+|..+.++|+|||+++.++++..
T Consensus 304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 23789999984321 1111111 125678899999999999999988743
No 124
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.5e-08 Score=83.37 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=66.8
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcccccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENV 103 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~ 103 (252)
+.......++.+||+||||+| .. +-.+++.. .+|++++. .++.+.++|-..-
T Consensus 64 m~~~L~~~~g~~VLEIGtGsG--Y~--------aAvla~l~-~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G 132 (209)
T COG2518 64 MLQLLELKPGDRVLEIGTGSG--YQ--------AAVLARLV-GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKG 132 (209)
T ss_pred HHHHhCCCCCCeEEEECCCch--HH--------HHHHHHHh-CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccC
Confidence 333356889999999999999 55 66777764 48999998 5799999999877
Q ss_pred CCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 104 ELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 104 ~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+ .+||.|+.......+ + . .+.+.|+|||+|++-..
T Consensus 133 ~~~~aPyD~I~Vtaaa~~v---P--~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEV---P--E----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCCcCEEEEeeccCCC---C--H----HHHHhcccCCEEEEEEc
Confidence 555 899999884432222 2 2 23577899999997665
No 125
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.76 E-value=2.6e-08 Score=86.79 Aligned_cols=90 Identities=17% Similarity=0.061 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL-- 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~-- 105 (252)
...++++|||+|||+|..++ ++..+..+..+++++|+ .+++++.+|+.+...
T Consensus 65 ~~~~~~~vLEiGt~~G~s~l--------~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 65 KIMNAKNTLEIGVFTGYSLL--------TTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHhCCCEEEEecCcccHHHH--------HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 45668899999999996555 33333333458999999 578999999976511
Q ss_pred -----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 -----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 -----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.++||+|++... .+....++..+.++|+|||++++...
T Consensus 137 ~~~~~~~~fD~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HhCCCCCCCCEEEECCC------HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 258999987432 24566788888999999999998764
No 126
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.74 E-value=6.4e-08 Score=91.56 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=68.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-C-CCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-H-PLDHYAPQY-----------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g-~~~v~gvD~-----------------~~i~~~~~d~~~~~-- 104 (252)
...+|.+|||+|||+|+ . +..++.. + ..+|+++|+ .++.++++|+..++
T Consensus 249 ~~~~g~~VLDl~ag~G~--k--------t~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 249 DPQPGEVILDACAAPGG--K--------TTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLEL 318 (434)
T ss_pred CCCCcCEEEEeCCCCch--h--------HHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccc
Confidence 45678999999999994 4 4444442 2 247999999 46889999998775
Q ss_pred --C-CCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773 105 --L-PEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 105 --~-~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
. .++||.|+++.-. ..+...++ ...+|..+.++|+|||+|+.++++++
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~ 388 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH 388 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 2 2689999984311 11111111 35789999999999999998887744
No 127
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.74 E-value=3.4e-08 Score=85.26 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=70.7
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEE
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVI 96 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~ 96 (252)
...++.+||..|||.|.. ...++..| .+|+|+|+ .+|++.
T Consensus 34 ~~~~~~rvLvPgCG~g~D----------~~~La~~G-~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYD----------MLWLAEQG-HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp TTSTSEEEEETTTTTSCH----------HHHHHHTT-EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CCCCCCeEEEeCCCChHH----------HHHHHHCC-CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 456778999999999943 45666777 47999998 467899
Q ss_pred EccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 97 QNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 97 ~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
++|+.+++.. ++||+|+=...++.+ +..........+.++|+|||.+++.
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Al-pp~~R~~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCAL-PPEMRERYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEE
T ss_pred EcccccCChhhcCCceEEEEecccccC-CHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 9999998765 689999987766665 4557899999999999999994433
No 128
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=7.1e-08 Score=79.60 Aligned_cols=90 Identities=20% Similarity=0.209 Sum_probs=65.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC-Cc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP-EK 108 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~-~~ 108 (252)
....++.+|||+|||+| .+ +..+++.+ .+++++|+ .+++++++|+..++.+ ..
T Consensus 9 ~~~~~~~~vLEiG~G~G--~l--------t~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 9 ANLRPGDTVLEIGPGKG--AL--------TEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred cCCCCcCEEEEECCCcc--HH--------HHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccC
Confidence 45567789999999999 66 66777764 67999999 3688999999998776 46
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||+|+++.- +++ ..+.+..++... .+.++|.+++...
T Consensus 78 ~d~vi~n~P-y~~-~~~~i~~~l~~~--~~~~~~~l~~q~e 114 (169)
T smart00650 78 PYKVVGNLP-YNI-STPILFKLLEEP--PAFRDAVLMVQKE 114 (169)
T ss_pred CCEEEECCC-ccc-HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence 999998653 333 123344444432 2458999988764
No 129
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=7.2e-08 Score=83.56 Aligned_cols=91 Identities=10% Similarity=-0.101 Sum_probs=73.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------------CceEEEEc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------------LILEVIQN 98 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------------~~i~~~~~ 98 (252)
.++.+||..|||.|.. ...++..|. +|+|+|+ .+++++++
T Consensus 42 ~~~~rvLvPgCGkg~D----------~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 110 (226)
T PRK13256 42 NDSSVCLIPMCGCSID----------MLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA 110 (226)
T ss_pred CCCCeEEEeCCCChHH----------HHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc
Confidence 4678999999999944 457777774 5999998 26789999
Q ss_pred cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|+.+++.. +.||+|+-..+++.+ +.....+.+..+.++|+|||.++.....
T Consensus 111 D~f~l~~~~~~~~~fD~VyDra~~~Al-pp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 111 DIFNLPKIANNLPVFDIWYDRGAYIAL-PNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCcCCCccccccCCcCeeeeehhHhcC-CHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 99999642 689999987776766 4557889999999999999999877653
No 130
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.72 E-value=8.1e-08 Score=81.59 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhh----cC--CCcEEEeeC--------------------------------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK----VH--PLDHYAPQY-------------------------------- 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~----~g--~~~v~gvD~-------------------------------- 90 (252)
..-+|+..||+||.-.- .+++.+.. .. ..+++|+|+
T Consensus 31 ~~lrIWSagCStGeE~Y------SlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~ 104 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPY------SLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTE 104 (196)
T ss_dssp S-EEEEETT-TTTHHHH------HHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEE
T ss_pred CCeEEEECCCCCChhHH------HHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccc
Confidence 45799999999996333 11333333 11 137999999
Q ss_pred -------------CceEEEEccccc-cCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 -------------LILEVIQNKIEN-VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 -------------~~i~~~~~d~~~-~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+|.|.+.|+.+ .+..+.||+|+|..++-++ +......++..+++.|+|||+|++....
T Consensus 105 ~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 105 RDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVLRRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp E-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred cCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence 789999999999 3333899999999987776 4556789999999999999999998764
No 131
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.72 E-value=3.7e-08 Score=84.49 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=58.6
Q ss_pred HhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC-----------------CceEEEEccccc
Q psy9773 42 CDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY-----------------LILEVIQNKIEN 102 (252)
Q Consensus 42 ~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~-----------------~~i~~~~~d~~~ 102 (252)
.....+.+|.+|||||||+| .. +..++.. +. ..|+++|+ .++.++++|...
T Consensus 65 l~~L~l~pg~~VLeIGtGsG--Y~--------aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 65 LEALDLKPGDRVLEIGTGSG--YQ--------AALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHTTC-TT-EEEEES-TTS--HH--------HHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHhcCCCCEEEEecCCCc--HH--------HHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh
Confidence 33355889999999999999 55 5555553 33 25899998 578999999876
Q ss_pred cCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 103 VELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 103 ~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.... .+||.|++... .... + ..+.+.|++||+|++-..
T Consensus 135 g~~~~apfD~I~v~~a---~~~i--p----~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAA---VPEI--P----EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSB---BSS--------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeec---cchH--H----HHHHHhcCCCcEEEEEEc
Confidence 5433 78999998544 2211 2 224567899999998654
No 132
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.72 E-value=8.4e-08 Score=84.98 Aligned_cols=97 Identities=19% Similarity=0.139 Sum_probs=67.5
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY-----------------LILEVIQNKIENVELP 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~ 106 (252)
...+|.+|||+|||+| .. +..++. .+ ...|+++|+ .++.+++.|+..++..
T Consensus 68 ~~~~g~~VLDl~ag~G--~k--------t~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 68 EPDPPERVLDMAAAPG--GK--------TTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA 137 (264)
T ss_pred CCCCcCEEEEECCCch--HH--------HHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence 4578899999999999 44 444443 22 247999999 4678888998776543
Q ss_pred -CceeEEEecccccc---cCCh---------h-------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 107 -EKVDIIVSEWMGFY---LLHE---------S-------MIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 107 -~~fDlIv~~~~~~~---l~~~---------~-------~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
+.||+|+++.-... +... . ....+|..+.++|+|||+|+.+++++.
T Consensus 138 ~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 138 VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 67999998432111 1111 1 124588999999999999998887643
No 133
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.71 E-value=1.4e-07 Score=83.10 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=63.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC--------------CceEEEEccccccCC---CCcee
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY--------------LILEVIQNKIENVEL---PEKVD 110 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~--------------~~i~~~~~d~~~~~~---~~~fD 110 (252)
.+.+|||+|||+| .+ ++.++.. +..+++++|+ .+++++++|+.+... .++||
T Consensus 86 ~~~~vLDlg~GsG--~i--------~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fD 155 (251)
T TIGR03704 86 GTLVVVDLCCGSG--AV--------GAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVD 155 (251)
T ss_pred CCCEEEEecCchH--HH--------HHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEe
Confidence 3468999999999 66 5555543 3357999999 346789999876422 25799
Q ss_pred EEEecccccc------cC-----C------------hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 111 IIVSEWMGFY------LL-----H------------ESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 111 lIv~~~~~~~------l~-----~------------~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+|++++-..- +. + ...+..++..+.++|+|||++++....
T Consensus 156 lVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~ 218 (251)
T TIGR03704 156 ILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE 218 (251)
T ss_pred EEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 9999763210 00 0 012457888888999999999988653
No 134
>KOG1975|consensus
Probab=98.71 E-value=4.6e-08 Score=87.73 Aligned_cols=96 Identities=22% Similarity=0.201 Sum_probs=73.6
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------------CceEEEEcccc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------------LILEVIQNKIE 101 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------------~~i~~~~~d~~ 101 (252)
....++..+|+||||-|+.++ -.. +.|...++|+|| -.+.|+.+|..
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLl--------Kw~--kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLL--------KWD--KAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHhccccccceeccCCcccHh--------Hhh--hhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 445778899999999998776 333 445568999999 24678999986
Q ss_pred cc------CCC-CceeEEEecccccccC-ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 102 NV------ELP-EKVDIIVSEWMGFYLL-HESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 102 ~~------~~~-~~fDlIv~~~~~~~l~-~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.- +++ .+||+|=|..++|+.. .......+|.++.+.|+|||+|+.+.|.
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 44 223 3499999977766553 5557888999999999999999988874
No 135
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.71 E-value=8.4e-08 Score=87.15 Aligned_cols=84 Identities=21% Similarity=0.176 Sum_probs=59.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C--------ceEEEEccccccCC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L--------ILEVIQNKIENVEL 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~--------~i~~~~~d~~~~~~ 105 (252)
.++.+|||+|||+| .+ +..+++.| .+|+|+|+ . ++.|..+|+..+
T Consensus 143 ~~~~~VLDlGcGtG--~~--------a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-- 209 (315)
T PLN02585 143 LAGVTVCDAGCGTG--SL--------AIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-- 209 (315)
T ss_pred CCCCEEEEecCCCC--HH--------HHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--
Confidence 46789999999999 66 66777776 47999999 1 256777777554
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP 146 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~ 146 (252)
.++||+|+|..+++|++.. ....++..+.+ +.+||+++.
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~-~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQD-KADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CCCcCEEEEcCEEEecCHH-HHHHHHHHHHh-hcCCEEEEE
Confidence 3789999998776665433 34566777654 466666553
No 136
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=7.5e-08 Score=91.31 Aligned_cols=97 Identities=18% Similarity=0.173 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~-- 104 (252)
...++.+|||+|||+| .. +..++.. +..+++++|+ .++.++++|+..+.
T Consensus 247 ~~~~g~~VLDlgaG~G--~~--------t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 316 (444)
T PRK14902 247 DPKGGDTVLDACAAPG--GK--------TTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEK 316 (444)
T ss_pred CCCCCCEEEEeCCCCC--HH--------HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccch
Confidence 4567889999999999 54 4455543 2357999999 35889999998764
Q ss_pred CCCceeEEEecccccc---cCC---------hhh-------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773 105 LPEKVDIIVSEWMGFY---LLH---------ESM-------IDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~---l~~---------~~~-------~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
++++||+|+++.-... +.+ ..+ ...+|..+.++|+|||+|+.++++.+
T Consensus 317 ~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~ 383 (444)
T PRK14902 317 FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE 383 (444)
T ss_pred hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence 2378999998542111 111 111 14578999999999999998877644
No 137
>PRK04457 spermidine synthase; Provisional
Probab=98.69 E-value=7.1e-08 Score=85.43 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC------------------CceEEEEccccccC--C
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY------------------LILEVIQNKIENVE--L 105 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~------------------~~i~~~~~d~~~~~--~ 105 (252)
...+++|||||||+| .+ +..++.. +..+++++|+ .+++++.+|+..+- .
T Consensus 64 ~~~~~~vL~IG~G~G--~l--------~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 64 NPRPQHILQIGLGGG--SL--------AKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred CCCCCEEEEECCCHh--HH--------HHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 345689999999999 66 5555543 3357999999 46888999987652 2
Q ss_pred CCceeEEEecccc-cccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 106 PEKVDIIVSEWMG-FYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 106 ~~~fDlIv~~~~~-~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+++||+|+++... ...+..-....++..+.+.|+|||++++..
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 3689999985421 111111123689999999999999999854
No 138
>KOG1541|consensus
Probab=98.68 E-value=5.1e-08 Score=83.30 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccc-cCCC-CceeEEE
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIEN-VELP-EKVDIIV 113 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~-~~~~-~~fDlIv 113 (252)
..+.-||||||||| +- +..+...| ...+|+|+ -.-.++.+|+.. +|++ ++||.+|
T Consensus 49 ~~~~~iLDIGCGsG--LS--------g~vL~~~G-h~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~I 117 (270)
T KOG1541|consen 49 PKSGLILDIGCGSG--LS--------GSVLSDSG-HQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVI 117 (270)
T ss_pred CCCcEEEEeccCCC--cc--------hheeccCC-ceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEE
Confidence 35678999999999 55 44444455 56778887 123578888863 3555 8999999
Q ss_pred ecccccccCChh--------hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 114 SEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 114 ~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+..+..++-|.. .+..++..++..|++|++.++....
T Consensus 118 SISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 118 SISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred EeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 955544443221 4667888899999999999998753
No 139
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.68 E-value=3.5e-08 Score=82.43 Aligned_cols=118 Identities=24% Similarity=0.348 Sum_probs=93.6
Q ss_pred HHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------
Q psy9773 22 EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------- 90 (252)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------- 90 (252)
+||...+.|..|...+..++.+.. ...+.|+|+|+| .+ +..++.. +.+|++++.
T Consensus 9 ~yh~~LL~D~eRlavF~~ai~~va----~d~~~DLGaGsG--iL--------s~~Aa~~-A~rViAiE~dPk~a~~a~eN 73 (252)
T COG4076 9 SYHLDLLRDVERLAVFTSAIAEVA----EDTFADLGAGSG--IL--------SVVAAHA-AERVIAIEKDPKRARLAEEN 73 (252)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHHh----hhceeeccCCcc--hH--------HHHHHhh-hceEEEEecCcHHHHHhhhc
Confidence 467788888899999999987533 378999999999 98 8888877 689999988
Q ss_pred ------CceEEEEccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCC
Q psy9773 91 ------LILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS 156 (252)
Q Consensus 91 ------~~i~~~~~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~ 156 (252)
.++.++.+|+.+..+ ...|+|+|.+....+..+ ....+++++...|+-++.+++........+.
T Consensus 74 ~~v~g~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~E-~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv 143 (252)
T COG4076 74 LHVPGDVNWEVVVGDARDYDF-ENADVVICEMLDTALIEE-KQVPVINAVLEFLRYDPTIIPQEVRIGANPV 143 (252)
T ss_pred CCCCCCcceEEEecccccccc-cccceeHHHHhhHHhhcc-cccHHHHHHHHHhhcCCccccHHHhhccCcc
Confidence 678999999999988 578999996655444444 3456778888899999999988654444443
No 140
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.66 E-value=1.8e-07 Score=85.21 Aligned_cols=85 Identities=18% Similarity=0.026 Sum_probs=60.4
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVEL 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~ 105 (252)
....++.+|||+|||+| .+ +..+++... ..|+++|+ .++.++++|......
T Consensus 76 L~i~~g~~VLDIG~GtG--~~--------a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~ 145 (322)
T PRK13943 76 VGLDKGMRVLEIGGGTG--YN--------AAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP 145 (322)
T ss_pred cCCCCCCEEEEEeCCcc--HH--------HHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc
Confidence 45678899999999999 55 556655322 35999998 368889999876644
Q ss_pred C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 106 P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 106 ~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
. ++||+|++... .. .+...+.+.|+|||++++..
T Consensus 146 ~~~~fD~Ii~~~g---~~------~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 146 EFAPYDVIFVTVG---VD------EVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccCCccEEEECCc---hH------HhHHHHHHhcCCCCEEEEEe
Confidence 4 67999998532 21 12234567899999988753
No 141
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.65 E-value=8.9e-08 Score=89.08 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCCC--
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVELP-- 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~~-- 106 (252)
..|++||++.|-|| .+ |..++..|+.+|++||. .++.++++|+..+-..
T Consensus 216 ~~GkrvLNlFsYTG--gf--------Sv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 216 AAGKRVLNLFSYTG--GF--------SVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred ccCCeEEEecccCc--HH--------HHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHH
Confidence 33999999999999 77 88999999989999999 5578999999887432
Q ss_pred ---CceeEEEecccccccC------ChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773 107 ---EKVDIIVSEWMGFYLL------HESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155 (252)
Q Consensus 107 ---~~fDlIv~~~~~~~l~------~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~ 155 (252)
.+||+||+.+-.+.-. -..+...++..+.++|+|||++++++++.+...
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~ 343 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSS 343 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCH
Confidence 4899999976543211 123677888999999999999999988754433
No 142
>KOG3010|consensus
Probab=98.65 E-value=6.7e-08 Score=83.56 Aligned_cols=85 Identities=15% Similarity=0.180 Sum_probs=61.1
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------Cc-------eEEEEccccccCC-CCceeE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LI-------LEVIQNKIENVEL-PEKVDI 111 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~-------i~~~~~d~~~~~~-~~~fDl 111 (252)
+.++|+|||+| .- +..++.+ .++|+|+|+ .+ .+....++.++.- ++++|+
T Consensus 35 ~~a~DvG~G~G--qa--------~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDl 103 (261)
T KOG3010|consen 35 RLAWDVGTGNG--QA--------ARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDL 103 (261)
T ss_pred ceEEEeccCCC--cc--------hHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceee
Confidence 38999999999 33 4456665 588999999 22 2233333333432 389999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCe-EEEeeccc
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEG-VMYPYKCI 150 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG-~lv~~~~~ 150 (252)
|+|..+.|++ ++..+.+.+.|+||+.| ++.+....
T Consensus 104 I~~Aqa~HWF----dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 104 ITAAQAVHWF----DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ehhhhhHHhh----chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 9998887877 78999999999999755 77666543
No 143
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.64 E-value=1e-07 Score=91.79 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f 109 (252)
++.+|||+|||+| .+ +..++. .+..+|+|+|+ .++.++++|+......++|
T Consensus 138 ~~~~VLDlG~GsG--~i--------ai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~f 207 (506)
T PRK01544 138 KFLNILELGTGSG--CI--------AISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKF 207 (506)
T ss_pred CCCEEEEccCchh--HH--------HHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCc
Confidence 3468999999999 55 554443 33457999999 3578899997653323689
Q ss_pred eEEEecccccc-----------cCCh------------hhHHHHHHHHhccccCCeEEEeecc
Q psy9773 110 DIIVSEWMGFY-----------LLHE------------SMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 110 DlIv~~~~~~~-----------l~~~------------~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+|+|++-... ..++ ..+..++..+.++|+|||.+++...
T Consensus 208 DlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 208 DFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred cEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 99999542100 0011 1345677888899999999998754
No 144
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.3e-07 Score=77.64 Aligned_cols=77 Identities=21% Similarity=0.125 Sum_probs=59.3
Q ss_pred CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCCC
Q psy9773 44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELPE 107 (252)
Q Consensus 44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~~ 107 (252)
......|++|+|+||||| .| ++.++..|+..|+|+|+ .++.|+.+|+..+. +
T Consensus 40 ~~g~l~g~~V~DlG~GTG--~L--------a~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~--~ 107 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTG--IL--------AIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR--G 107 (198)
T ss_pred HcCCcCCCEEEEcCCCcC--HH--------HHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC--C
Confidence 367788999999999999 88 88888899999999999 47999999999886 5
Q ss_pred ceeEEEecccccccCChhhHHHHHH
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIF 132 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~ 132 (252)
.+|.++.++-+.......|..-+..
T Consensus 108 ~~dtvimNPPFG~~~rhaDr~Fl~~ 132 (198)
T COG2263 108 KFDTVIMNPPFGSQRRHADRPFLLK 132 (198)
T ss_pred ccceEEECCCCccccccCCHHHHHH
Confidence 6888888765432222234443333
No 145
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.63 E-value=9.4e-08 Score=79.51 Aligned_cols=93 Identities=24% Similarity=0.376 Sum_probs=62.7
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-------------------CceEEEEccccccC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-------------------LILEVIQNKIENVE 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-------------------~~i~~~~~d~~~~~ 104 (252)
.....+.+||+||||+| .. ++.++.. ++.+|+..|. .++.+...|+.+..
T Consensus 41 ~~~~~~~~VLELGaG~G--l~--------gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~ 110 (173)
T PF10294_consen 41 PELFRGKRVLELGAGTG--LP--------GIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDEL 110 (173)
T ss_dssp GGGTTTSEEEETT-TTS--HH--------HHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-H
T ss_pred hhhcCCceEEEECCccc--hh--------HHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcc
Confidence 45678899999999999 87 7888777 6678999998 34566666664421
Q ss_pred ----C-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 ----L-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ----~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
. +.+||+|++..+.+ +......++.-+.++|+|+|.+++....
T Consensus 111 ~~~~~~~~~~D~IlasDv~Y---~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 111 DSDLLEPHSFDVILASDVLY---DEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp HHHHHS-SSBSEEEEES--S----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccccccccCCEEEEecccc---hHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 1 15799999977644 4467888999999999999998777654
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.62 E-value=2.1e-07 Score=87.87 Aligned_cols=97 Identities=14% Similarity=0.033 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------C-ceEEEEccccccCC-
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------L-ILEVIQNKIENVEL- 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~-~i~~~~~d~~~~~~- 105 (252)
...+|.+|||+|||+| .. +..++. .+..+++|+|+ . .+.+..+|......
T Consensus 235 ~~~~g~~VLDlcag~G--~k--------t~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~ 304 (426)
T TIGR00563 235 APQNEETILDACAAPG--GK--------TTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQW 304 (426)
T ss_pred CCCCCCeEEEeCCCcc--HH--------HHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccc
Confidence 4567899999999999 44 444444 33357999999 1 23335666655443
Q ss_pred --CCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccccc
Q psy9773 106 --PEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 106 --~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.++||.|+++... ..+...++ ...+|..+.++|+|||+|+.++++..
T Consensus 305 ~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 305 AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 2679999974211 11211121 35789999999999999999988744
No 147
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.60 E-value=4.3e-07 Score=76.22 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=77.1
Q ss_pred HHHHHHHHHhC-CC-CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------Cce
Q psy9773 34 NEAYRAAICDN-PN-IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LIL 93 (252)
Q Consensus 34 ~~~~~~~l~~~-~~-~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i 93 (252)
....++++.+. .+ ...|.++||+-+||| .+ ++.++++|+.+++.+|. .+.
T Consensus 26 ~drVREalFNil~~~~i~g~~~LDlFAGSG--aL--------GlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~ 95 (187)
T COG0742 26 TDRVREALFNILAPDEIEGARVLDLFAGSG--AL--------GLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEA 95 (187)
T ss_pred chHHHHHHHHhccccccCCCEEEEecCCcc--Hh--------HHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccce
Confidence 34444555443 34 488999999999999 88 88999999999999999 567
Q ss_pred EEEEcccccc--CCC--CceeEEEecccccccCChhhHHHHHHH--HhccccCCeEEEeeccccccCC
Q psy9773 94 EVIQNKIENV--ELP--EKVDIIVSEWMGFYLLHESMIDSVIFA--RDKFLKPEGVMYPYKCILHSAP 155 (252)
Q Consensus 94 ~~~~~d~~~~--~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~--l~~~LkpgG~lv~~~~~~~~~~ 155 (252)
.++..|...+ ... ++||+|+.++-.+. ...+....+.. -..+|+|+|.+++........+
T Consensus 96 ~~~~~da~~~L~~~~~~~~FDlVflDPPy~~--~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~~~~ 161 (187)
T COG0742 96 RVLRNDALRALKQLGTREPFDLVFLDPPYAK--GLLDKELALLLLEENGWLKPGALIVVEHDKDVELP 161 (187)
T ss_pred EEEeecHHHHHHhcCCCCcccEEEeCCCCcc--chhhHHHHHHHHHhcCCcCCCcEEEEEeCCCcCcc
Confidence 7888888744 222 35999999775331 11111223333 4688999999999987644333
No 148
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.59 E-value=3.4e-07 Score=86.87 Aligned_cols=98 Identities=15% Similarity=0.050 Sum_probs=69.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEcc
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNK 99 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d 99 (252)
+...+.......++.+|||+|||+| .+ +..++..+ .+|+|+|+ .++.++++|
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG--~~--------sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d 353 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLG--NF--------TLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHAN 353 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCC--HH--------HHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeC
Confidence 3333333334567789999999999 66 67777765 68999999 468999999
Q ss_pred ccccC----CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 100 IENVE----LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 100 ~~~~~----~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
+.+.. +. ++||+|++++--. . +..++..+.+ ++|++++|+++....
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~-----g-~~~~~~~l~~-~~~~~ivyvSCnp~t 404 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRA-----G-AAEVMQALAK-LGPKRIVYVSCNPAT 404 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCc-----C-hHHHHHHHHh-cCCCeEEEEEeChHH
Confidence 87542 22 5799999866321 2 2345555544 699999999986533
No 149
>PLN02366 spermidine synthase
Probab=98.57 E-value=2.4e-07 Score=83.91 Aligned_cols=96 Identities=14% Similarity=-0.004 Sum_probs=67.0
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC-
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE- 104 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~- 104 (252)
..+++||+||||+| .+ +..+++.. ..+|+.+|+ ++++++.+|...+-
T Consensus 90 ~~pkrVLiIGgG~G--~~--------~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~ 159 (308)
T PLN02366 90 PNPKKVLVVGGGDG--GV--------LREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK 159 (308)
T ss_pred CCCCeEEEEcCCcc--HH--------HHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh
Confidence 45789999999999 55 45555543 357888887 47889999986552
Q ss_pred -C-CCceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 105 -L-PEKVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 105 -~-~~~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
. .++||+|++.......+.. ---..++..+.++|+|||+++....+.+.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~ 211 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWL 211 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCccc
Confidence 2 3689999995532221110 12356889999999999999887655343
No 150
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.56 E-value=1.6e-08 Score=84.99 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC-----
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE----- 104 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~----- 104 (252)
..|.+||||.|||| .+ ++.++++|+++|+.||. .++.++..|....-
T Consensus 41 ~~g~~vLDLFaGSG--al--------GlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~ 110 (183)
T PF03602_consen 41 LEGARVLDLFAGSG--AL--------GLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK 110 (183)
T ss_dssp HTT-EEEETT-TTS--HH--------HHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH
T ss_pred cCCCeEEEcCCccC--cc--------HHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc
Confidence 68999999999999 88 88999999999999999 35788888865442
Q ss_pred CCCceeEEEecccccccCChhh-HHHHHHHHh--ccccCCeEEEeecccc
Q psy9773 105 LPEKVDIIVSEWMGFYLLHESM-IDSVIFARD--KFLKPEGVMYPYKCIL 151 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~~~~~-~~~~l~~l~--~~LkpgG~lv~~~~~~ 151 (252)
...+||+|++++- +.. .. ...++..+. .+|+++|++++.+...
T Consensus 111 ~~~~fDiIflDPP-Y~~---~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 111 KGEKFDIIFLDPP-YAK---GLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp CTS-EEEEEE--S-TTS---CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred cCCCceEEEECCC-ccc---chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 2378999999774 222 22 356666665 8999999999998653
No 151
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.55 E-value=3.2e-07 Score=83.21 Aligned_cols=88 Identities=9% Similarity=0.030 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--CCc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--PEK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~~~ 108 (252)
.++.+|||+|||+| .+ +..+++.+ .+|+|+|+ .+++|+++|+..+.. .+.
T Consensus 172 ~~~~~VLDl~cG~G--~~--------sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~ 240 (315)
T PRK03522 172 LPPRSMWDLFCGVG--GF--------GLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEV 240 (315)
T ss_pred cCCCEEEEccCCCC--HH--------HHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCC
Confidence 35689999999999 77 77788776 68999999 468999999987643 257
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
||+|++++--.. ....++..+ ..++|++++|+++....
T Consensus 241 ~D~Vv~dPPr~G-----~~~~~~~~l-~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 241 PDLVLVNPPRRG-----IGKELCDYL-SQMAPRFILYSSCNAQT 278 (315)
T ss_pred CeEEEECCCCCC-----ccHHHHHHH-HHcCCCeEEEEECCccc
Confidence 999999764221 122333333 34688999999887543
No 152
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.54 E-value=4.5e-07 Score=80.53 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC--
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~-- 104 (252)
.+++||+||||+| .+ +..+.+.+ ..+++++|+ .+++++.+|...+-
T Consensus 72 ~p~~VL~iG~G~G--~~--------~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDG--GV--------LREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCEEEEEcCCch--HH--------HHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh
Confidence 4569999999999 44 44444443 467888888 24667777765542
Q ss_pred CCCceeEEEecccccccCChhh--HHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 LPEKVDIIVSEWMGFYLLHESM--IDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~~~~~--~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+++||+|++........ ... ...++..+.++|+|||++++...+
T Consensus 142 ~~~~yDvIi~D~~~~~~~-~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGP-AETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred CCCCccEEEEeCCCCCCc-ccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 136899999965422111 111 457888999999999999987543
No 153
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.54 E-value=4.1e-07 Score=79.03 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------Cce-EEEEcccc
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LIL-EVIQNKIE 101 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i-~~~~~d~~ 101 (252)
..+..++........+.+|||+||||| .+ +..+++.|+++|+|+|+ .++ .+...|+.
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG--~~--------t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~ 130 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTG--GF--------TDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIR 130 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCC--HH--------HHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcc
Confidence 334455554444568899999999999 77 78888888889999999 232 23444555
Q ss_pred ccCCC------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 102 NVELP------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 102 ~~~~~------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..... ..+|+++++ +..+|..+.++|+| |.+++-...
T Consensus 131 ~~~~~~~~~d~~~~DvsfiS-----------~~~~l~~i~~~l~~-~~~~~L~KP 173 (228)
T TIGR00478 131 YVTPADIFPDFATFDVSFIS-----------LISILPELDLLLNP-NDLTLLFKP 173 (228)
T ss_pred cCCHhHcCCCceeeeEEEee-----------hHhHHHHHHHHhCc-CeEEEEcCh
Confidence 33211 345655442 22357788888999 777765544
No 154
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.54 E-value=4.3e-07 Score=76.65 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=65.8
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC--C-
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE--L- 105 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~--~- 105 (252)
...+.+|||++||+| .+ ++.++++|+.+|+++|. .++.++++|+.... .
T Consensus 47 ~~~g~~vLDLfaGsG--~l--------glea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~ 116 (189)
T TIGR00095 47 EIQGAHLLDVFAGSG--LL--------GEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA 116 (189)
T ss_pred hcCCCEEEEecCCCc--HH--------HHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh
Confidence 356899999999999 88 88999999888999999 35789999995541 1
Q ss_pred -C-CceeEEEecccccccCChhhHHHHHHHH--hccccCCeEEEeeccc
Q psy9773 106 -P-EKVDIIVSEWMGFYLLHESMIDSVIFAR--DKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 -~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l--~~~LkpgG~lv~~~~~ 150 (252)
. ..||+|+..+-.. . .....++..+ ..+|+++|++++.+..
T Consensus 117 ~~~~~~dvv~~DPPy~-~---~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 117 KKPTFDNVIYLDPPFF-N---GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred ccCCCceEEEECcCCC-C---CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 1 2489998866422 1 1233333333 4689999999998765
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.53 E-value=3.9e-07 Score=81.72 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=47.1
Q ss_pred CceEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 LILEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..|.|.+.|+.+.+++ +.||+|+|..++.++ .......++..+.+.|+|||+|++....
T Consensus 204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred ccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 4457778888775443 789999998887766 4457889999999999999999988753
No 156
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=6e-07 Score=80.30 Aligned_cols=86 Identities=27% Similarity=0.329 Sum_probs=59.7
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC--------------C---ceEEEEccccccCCCCceeEEE
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY--------------L---ILEVIQNKIENVELPEKVDIIV 113 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~--------------~---~i~~~~~d~~~~~~~~~fDlIv 113 (252)
+|||+||||| .+ ++.++...+ .+|+|+|+ . ++.++++|+..-- .++||+||
T Consensus 113 ~ilDlGTGSG--~i--------ai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~-~~~fDlIV 181 (280)
T COG2890 113 RILDLGTGSG--AI--------AIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL-RGKFDLIV 181 (280)
T ss_pred cEEEecCChH--HH--------HHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc-CCceeEEE
Confidence 8999999999 66 666666544 48999999 2 2344444433322 25899999
Q ss_pred ecccccccCCh------------------------hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 114 SEWMGFYLLHE------------------------SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 114 ~~~~~~~l~~~------------------------~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|++- +++.. .....++..+.+.|+|||.+++....
T Consensus 182 sNPP--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~ 240 (280)
T COG2890 182 SNPP--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL 240 (280)
T ss_pred eCCC--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence 9652 22221 13567788889999999999998763
No 157
>PRK01581 speE spermidine synthase; Validated
Probab=98.50 E-value=3.7e-07 Score=84.06 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------------CceEEEEcccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------------LILEVIQNKIE 101 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------------~~i~~~~~d~~ 101 (252)
...+++||++|||+| .. ...+.+.+ ..+|+++|+ ++++++.+|..
T Consensus 148 h~~PkrVLIIGgGdG--~t--------lrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~ 217 (374)
T PRK01581 148 VIDPKRVLILGGGDG--LA--------LREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK 217 (374)
T ss_pred CCCCCEEEEECCCHH--HH--------HHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH
Confidence 345579999999999 44 34444443 357888888 46778888888
Q ss_pred ccCC--CCceeEEEeccccccc--CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 102 NVEL--PEKVDIIVSEWMGFYL--LHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 102 ~~~~--~~~fDlIv~~~~~~~l--~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+-. .+.||+|+++...... ...-.-..++..+++.|+|||+|++...+
T Consensus 218 ~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 218 EFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred HHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 7532 2689999996421111 01112356889999999999999987654
No 158
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.49 E-value=2.4e-07 Score=82.95 Aligned_cols=95 Identities=20% Similarity=0.176 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCC---
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVEL--- 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~--- 105 (252)
..+++|||+-|=|| .+ +..++..|+.+|++||. .++++++.|+..+..
T Consensus 122 ~~gkrvLnlFsYTG--gf--------sv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 122 AKGKRVLNLFSYTG--GF--------SVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp CTTCEEEEET-TTT--HH--------HHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred cCCCceEEecCCCC--HH--------HHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 45889999999999 77 77888889889999999 578899999977522
Q ss_pred -CCceeEEEecccccccC---ChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 106 -PEKVDIIVSEWMGFYLL---HESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 106 -~~~fDlIv~~~~~~~l~---~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.++||+||+.+-.+.-. -..+...++..+.++|+|||.|++.+++..
T Consensus 192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 27899999966543211 123677889999999999999998877533
No 159
>PRK03612 spermidine synthase; Provisional
Probab=98.49 E-value=3.8e-07 Score=88.27 Aligned_cols=93 Identities=17% Similarity=0.105 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------------CceEEEEccccc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------------LILEVIQNKIEN 102 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------------~~i~~~~~d~~~ 102 (252)
.++++|||+|||+| .. +..+.+.+. .+++++|+ ++++++.+|...
T Consensus 296 ~~~~rVL~IG~G~G--~~--------~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 296 ARPRRVLVLGGGDG--LA--------LREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCCeEEEEcCCcc--HH--------HHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 45689999999999 55 555556554 68999998 257788888877
Q ss_pred cC--CCCceeEEEecccccccCC--hhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 103 VE--LPEKVDIIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 103 ~~--~~~~fDlIv~~~~~~~l~~--~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+. .+++||+|+++......+. .-.-..+++.+.+.|+|||++++...+
T Consensus 366 ~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 366 WLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred HHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 52 2378999999653221110 011245788999999999999987654
No 160
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.48 E-value=4e-07 Score=79.93 Aligned_cols=94 Identities=21% Similarity=0.268 Sum_probs=67.1
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------------------CceEEEEccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------------------LILEVIQNKI 100 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------------------~~i~~~~~d~ 100 (252)
|.....+.+|.+||+.|.|+| .+ +..+++ .++ .+|+..|+ .++++.+.|+
T Consensus 32 I~~~l~i~pG~~VlEaGtGSG--~l--------t~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv 101 (247)
T PF08704_consen 32 ILMRLDIRPGSRVLEAGTGSG--SL--------THALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV 101 (247)
T ss_dssp HHHHTT--TT-EEEEE--TTS--HH--------HHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G
T ss_pred HHHHcCCCCCCEEEEecCCcH--HH--------HHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce
Confidence 333468899999999999999 65 556554 332 58999999 6899999999
Q ss_pred cccCCC----CceeEEEecccccccCChhhHHHHHHHHhccc-cCCeEEEeeccccc
Q psy9773 101 ENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFL-KPEGVMYPYKCILH 152 (252)
Q Consensus 101 ~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~L-kpgG~lv~~~~~~~ 152 (252)
....++ ..+|.|+... +++..++..+.+.| +|||++++..+++.
T Consensus 102 ~~~g~~~~~~~~~DavfLDl--------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFLDL--------PDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp GCG--STT-TTSEEEEEEES--------SSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred ecccccccccCcccEEEEeC--------CCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 754442 6799998744 56777889999999 89999999888643
No 161
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.47 E-value=6.6e-07 Score=83.17 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=64.3
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC--Cc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP--EK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~ 108 (252)
.++.+|||+|||+| .+ ++.++..+ .+|+|+|+ .++.++++|+.++... ++
T Consensus 232 ~~~~~vLDL~cG~G--~~--------~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~ 300 (374)
T TIGR02085 232 IPVTQMWDLFCGVG--GF--------GLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSA 300 (374)
T ss_pred cCCCEEEEccCCcc--HH--------HHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCC
Confidence 35679999999999 77 77777765 67999999 4688999999775422 56
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
||+|++++--. .....++..+. .++|++++|+++..
T Consensus 301 ~D~vi~DPPr~-----G~~~~~l~~l~-~~~p~~ivyvsc~p 336 (374)
T TIGR02085 301 PELVLVNPPRR-----GIGKELCDYLS-QMAPKFILYSSCNA 336 (374)
T ss_pred CCEEEECCCCC-----CCcHHHHHHHH-hcCCCeEEEEEeCH
Confidence 99999977422 22344555553 47999999999864
No 162
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.45 E-value=7.9e-07 Score=80.98 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEE
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQ 97 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~ 97 (252)
..+++++.+.+...+|..|||--|||| .+ .+.+...|+ +++|+|+ ....+..
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTG--gi--------LiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTG--GI--------LIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCcc--HH--------HHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEE
Confidence 446677877889999999999999999 44 445555674 6999999 2333444
Q ss_pred c-cccccCCC-CceeEEEecccccccCC-------hhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 98 N-KIENVELP-EKVDIIVSEWMGFYLLH-------ESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 98 ~-d~~~~~~~-~~fDlIv~~~~~~~l~~-------~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
. |+..++++ +++|.|++.+-- .... ..-...+|..+.++|++||++++..+
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPY-Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPY-GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCC-CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4 99999988 569999995532 1111 12367889999999999999999887
No 163
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.42 E-value=1.9e-06 Score=76.50 Aligned_cols=95 Identities=13% Similarity=0.171 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcC------CCcEEEeeC--------------------------------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH------PLDHYAPQY-------------------------------- 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g------~~~v~gvD~-------------------------------- 90 (252)
..-+|+-.||+||--.- .+++.+...+ ..+++|+|+
T Consensus 96 ~~irIWSaaCStGEEpY------SiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~ 169 (268)
T COG1352 96 RPIRIWSAACSTGEEPY------SLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFE 169 (268)
T ss_pred CceEEEecCcCCCccHH------HHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEe
Confidence 45799999999996333 0133333322 247889999
Q ss_pred --------------CceEEEEccccccC-CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 --------------LILEVIQNKIENVE-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 --------------~~i~~~~~d~~~~~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..|.|-+.|+.... .++.||+|+|..|+-++ +.+.-..++..++..|+|||+|++...-
T Consensus 170 ~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 170 RGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred ecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 56788888887776 66889999999988776 4446789999999999999999998754
No 164
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.41 E-value=1.2e-06 Score=82.73 Aligned_cols=88 Identities=17% Similarity=0.094 Sum_probs=63.5
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC---
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE--- 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--- 104 (252)
....++.+|||+|||+| .+ ++.+++.+ .+|+|+|+ .++.++++|+..+.
T Consensus 288 l~~~~~~~vLDl~cG~G--~~--------sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 288 LELQGEELVVDAYCGVG--TF--------TLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred hccCCCCEEEEcCCCcC--HH--------HHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 34566789999999999 77 77777664 68999999 47899999987641
Q ss_pred -C-CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 105 -L-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 105 -~-~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
. ..+||+|++++.-.. ....++..+. .|+|++++|+++.
T Consensus 357 ~~~~~~~D~vi~dPPr~G-----~~~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKG-----CAAEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred HhcCCCCCEEEECcCCCC-----CCHHHHHHHH-hcCCCEEEEEcCC
Confidence 2 257999998664221 1244555554 4789999988764
No 165
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.40 E-value=1.2e-06 Score=76.87 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-CCceeEEEeccc
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-PEKVDIIVSEWM 117 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-~~~fDlIv~~~~ 117 (252)
...++||||+|.| .. +..++.. .++|++++. ..++++ +..++.. +.+||+|.|.++
T Consensus 94 ~~~~lLDlGAGdG--~V--------T~~l~~~-f~~v~aTE~S~~Mr~rL~~kg~~vl--~~~~w~~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDG--EV--------TERLAPL-FKEVYATEASPPMRWRLSKKGFTVL--DIDDWQQTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCc--HH--------HHHHHhh-cceEEeecCCHHHHHHHHhCCCeEE--ehhhhhccCCceEEEeehhh
Confidence 4578999999999 44 4555554 467999999 445544 3333432 268999999665
Q ss_pred ccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 118 GFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 118 ~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+..-..+..+|+.+++.|+|+|++++..
T Consensus 161 ---LDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 161 ---LDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ---hhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4444688999999999999999999765
No 166
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.38 E-value=7.6e-07 Score=76.83 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=74.3
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~-- 104 (252)
..+.|.+|||.+.|-| .. ++.+.++|+..|+.++. .+|.++.+|+.++-
T Consensus 131 ~~~~G~rVLDtC~GLG--Yt--------Ai~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~ 200 (287)
T COG2521 131 KVKRGERVLDTCTGLG--YT--------AIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD 200 (287)
T ss_pred ccccCCEeeeeccCcc--HH--------HHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc
Confidence 4557999999999999 65 77888899878988877 46788899988773
Q ss_pred CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 105 LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 105 ~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++ .+||+|+..+--+.+...-.-..+-.+++|+|+|||+|+-...
T Consensus 201 ~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG 246 (287)
T COG2521 201 FDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVG 246 (287)
T ss_pred CCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeC
Confidence 33 7899999866544444444567888999999999999986554
No 167
>PRK04148 hypothetical protein; Provisional
Probab=98.36 E-value=3.3e-06 Score=67.34 Aligned_cols=94 Identities=16% Similarity=0.178 Sum_probs=67.3
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCcCchh-hhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCC
Q psy9773 38 RAAICDNPNIFAGKTVLDVGTGTGKSI-LLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELP 106 (252)
Q Consensus 38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~-ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~ 106 (252)
.+.|..+.....+.+|||+|||+| . + +..+++.| ..|+|+|+ ..+.++.+|+.+..+.
T Consensus 5 ~~~l~~~~~~~~~~kileIG~GfG--~~v--------A~~L~~~G-~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 5 AEFIAENYEKGKNKKIVELGIGFY--FKV--------AKKLKESG-FDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLE 73 (134)
T ss_pred HHHHHHhcccccCCEEEEEEecCC--HHH--------HHHHHHCC-CEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHH
Confidence 334444444456789999999999 4 5 66777777 57999999 3468999999988776
Q ss_pred --CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 --EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 --~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+|.+ +...+++...+.++.+.+.-+-++.+-.
T Consensus 74 ~y~~a~liys------irpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 74 IYKNAKLIYS------IRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred HHhcCCEEEE------eCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 88999987 3444567777777776665555555443
No 168
>PLN02476 O-methyltransferase
Probab=98.36 E-value=1.3e-06 Score=77.90 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=66.3
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccC-
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVE- 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~- 104 (252)
....+++|||+|||+|.+++ .++. .+ ..+++++|. ++++++.+|+.+..
T Consensus 115 ~~~~ak~VLEIGT~tGySal----------~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~ 184 (278)
T PLN02476 115 QILGAERCIEVGVYTGYSSL----------AVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLK 184 (278)
T ss_pred HhcCCCeEEEecCCCCHHHH----------HHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence 45567899999999995544 4443 11 246999999 58999999986642
Q ss_pred -C-----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 -L-----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 -~-----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ .++||+|+... +......++..+.++|+|||++++...-
T Consensus 185 ~l~~~~~~~~FD~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 185 SMIQNGEGSSYDFAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred HHHhcccCCCCCEEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 1 25799998843 2346778888889999999999987653
No 169
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.34 E-value=2e-06 Score=73.26 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=41.4
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCC
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYS 158 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~ 158 (252)
++||.|+|..++|..++. ....+|..+.++|+|||.|++..+..+.-....
T Consensus 101 ~~~D~i~~~N~lHI~p~~-~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts 151 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWS-AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS 151 (204)
T ss_pred CCcceeeehhHHHhcCHH-HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC
Confidence 589999999988877666 578999999999999999999988655443433
No 170
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.33 E-value=1.9e-06 Score=73.08 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=60.5
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEcccccc----CCCCce
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENV----ELPEKV 109 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~----~~~~~f 109 (252)
.+||||||.|..++ .+|. .+...++|+|+ .|+.++++|+..+ ..++++
T Consensus 20 l~lEIG~G~G~~l~----------~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v 89 (195)
T PF02390_consen 20 LILEIGCGKGEFLI----------ELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSV 89 (195)
T ss_dssp EEEEET-TTSHHHH----------HHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSE
T ss_pred eEEEecCCCCHHHH----------HHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCch
Confidence 89999999994443 4444 44478999999 8999999999874 234889
Q ss_pred eEEEecccccccC--Chh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773 110 DIIVSEWMGFYLL--HES---MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 110 DlIv~~~~~~~l~--~~~---~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|-|+...---+.- |.. --..++..+.++|+|||.|.+.+-
T Consensus 90 ~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 90 DRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp EEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred heEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 9998733221110 100 245788899999999999988764
No 171
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.33 E-value=1.1e-06 Score=73.16 Aligned_cols=105 Identities=23% Similarity=0.141 Sum_probs=62.7
Q ss_pred HHHHHHHhCCCCCC--CCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------CceEEEEccccccCC
Q psy9773 36 AYRAAICDNPNIFA--GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------LILEVIQNKIENVEL 105 (252)
Q Consensus 36 ~~~~~l~~~~~~~~--~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------~~i~~~~~d~~~~~~ 105 (252)
.+.+++.......+ +.+||||||++| -+ +..+..++ ..+|+|+|+ ..+.++++|+.+...
T Consensus 8 KL~ei~~~~~~~~~~~~~~vlDlG~aPG--Gw--------s~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~ 77 (181)
T PF01728_consen 8 KLYEIDEKFKIFKPGKGFTVLDLGAAPG--GW--------SQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPEN 77 (181)
T ss_dssp HHHHHHHTTSSS-TTTTEEEEEET-TTS--HH--------HHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEH
T ss_pred HHHHHHHHCCCCCcccccEEEEcCCccc--ce--------eeeeeecccccceEEEEeccccccccceeeeecccchhhH
Confidence 34444544332444 489999999999 66 66777765 468999999 456777778754311
Q ss_pred --------C---CceeEEEecccccccCC-----h---hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 --------P---EKVDIIVSEWMGFYLLH-----E---SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 --------~---~~fDlIv~~~~~~~l~~-----~---~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ ..+|+|+|......... . .-....+.-+...|+|||.+++-...
T Consensus 78 ~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 78 IKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred HHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 1 48999999663222111 1 12233344445779999988876543
No 172
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.31 E-value=1.7e-06 Score=74.07 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccCC-
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVEL- 105 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~- 105 (252)
....++||+|||++|.+++ .+++ .+ ..+++.+|. .+|+++.+|+.+.-.
T Consensus 43 ~~~~k~vLEIGt~~GySal----------~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~ 112 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSAL----------WLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPE 112 (205)
T ss_dssp HHT-SEEEEESTTTSHHHH----------HHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHH
T ss_pred hcCCceEEEeccccccHHH----------HHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHH
Confidence 4667899999999996655 3333 22 257999999 689999999976521
Q ss_pred ------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 ------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.++||+|+... .......++..+.++|+|||++++...-
T Consensus 113 l~~~~~~~~fD~VFiDa------~K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 113 LANDGEEGQFDFVFIDA------DKRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp HHHTTTTTSEEEEEEES------TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred HHhccCCCceeEEEEcc------cccchhhHHHHHhhhccCCeEEEEcccc
Confidence 25799998843 2245777888888999999999998754
No 173
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.31 E-value=7.8e-07 Score=72.95 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=49.4
Q ss_pred CceEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+++++++|+.+++++ ++||+|++..+++++ .++..+|++++|+|||||.|++....
T Consensus 26 ~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~---~d~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 26 KCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV---VDRLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred CceEEEEechhhCCCCCCCeeEEEecchhhcC---CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 4789999999999887 789999997765555 68899999999999999999987654
No 174
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.30 E-value=1.8e-06 Score=76.14 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------------------
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------------------- 90 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------------------- 90 (252)
.....|.++||||||.- +. ..+.+...+.+++..|.
T Consensus 52 ~g~~~g~~llDiGsGPt--iy--------~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPT--IY--------QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp TSSS-EEEEEEES-TT----G--------GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred ccCcCCCEEEEeCCCcH--HH--------hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 34556889999999996 44 33333333456777777
Q ss_pred -----------Cce-EEEEccccccCC-------CCceeEEEeccccccc-CChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 91 -----------LIL-EVIQNKIENVEL-------PEKVDIIVSEWMGFYL-LHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 91 -----------~~i-~~~~~d~~~~~~-------~~~fDlIv~~~~~~~l-~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..| .++.+|+.+.+. |.+||+|++..++... ........+++++.++|||||.|++...
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 223 377889877632 2359999997776444 3566889999999999999999998653
No 175
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=5.1e-06 Score=71.92 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceE-EEEcccc
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILE-VIQNKIE 101 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~-~~~~d~~ 101 (252)
..+..++.......+|+++||+|+.||++ +..+..+|++.|+|+|. .++. +...|++
T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGF----------Td~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r 134 (245)
T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGF----------TDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVR 134 (245)
T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccH----------HHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChh
Confidence 34566666666778899999999999954 55777889999999999 3333 4456666
Q ss_pred ccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 102 NVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 102 ~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.+... +..|+|+|.. .++ .+..+|..+..+|+|+|.++.-...++
T Consensus 135 ~l~~~~~~~~~d~~v~Dv--SFI----SL~~iLp~l~~l~~~~~~~v~LvKPQF 182 (245)
T COG1189 135 YLTPEDFTEKPDLIVIDV--SFI----SLKLILPALLLLLKDGGDLVLLVKPQF 182 (245)
T ss_pred hCCHHHcccCCCeEEEEe--ehh----hHHHHHHHHHHhcCCCceEEEEecchh
Confidence 66443 6789999844 333 678899999999999999987665443
No 176
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.30 E-value=3.8e-06 Score=71.87 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=72.3
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--CceEEEEccccccCCC----CceeEEEecccccccCCh
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--LILEVIQNKIENVELP----EKVDIIVSEWMGFYLLHE 124 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--~~i~~~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~ 124 (252)
.++|||||=+..+.. ...+...|+.||+ ..-.+.++|+-..|.| +.||+|.++.++++++..
T Consensus 53 lrlLEVGals~~N~~------------s~~~~fdvt~IDLns~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 53 LRLLEVGALSTDNAC------------STSGWFDVTRIDLNSQHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred ceEEeecccCCCCcc------------cccCceeeEEeecCCCCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 699999987652222 2344456999999 4556889999998776 689999999999999999
Q ss_pred hhHHHHHHHHhccccCCeE-----EEeeccc
Q psy9773 125 SMIDSVIFARDKFLKPEGV-----MYPYKCI 150 (252)
Q Consensus 125 ~~~~~~l~~l~~~LkpgG~-----lv~~~~~ 150 (252)
.....++.+++++|+|+|. |++..|.
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 8999999999999999999 8777664
No 177
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=3.9e-06 Score=71.47 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=68.6
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCC--cEEEeeC------CceEEEEccccccCCC------
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL--DHYAPQY------LILEVIQNKIENVELP------ 106 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~--~v~gvD~------~~i~~~~~d~~~~~~~------ 106 (252)
......+.++.+|+||||..| .+ +..+++.... .|+|+|+ .++.++++|++.-+..
T Consensus 37 ~~k~~i~~~~~~ViDLGAAPG--gW--------sQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 37 NEKFKLFKPGMVVVDLGAAPG--GW--------SQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHhcCeecCCCEEEEcCCCCC--cH--------HHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHH
Confidence 333445677899999999999 77 7777774322 4999999 6789999999877532
Q ss_pred ---CceeEEEeccccccc----CCh-h---hHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 ---EKVDIIVSEWMGFYL----LHE-S---MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ---~~fDlIv~~~~~~~l----~~~-~---~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.++|+|+|.++.... .++ . -...++.-+..+|+|||.+++-..
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 347999986654111 111 1 233444555789999999998653
No 178
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.26 E-value=8.8e-06 Score=68.47 Aligned_cols=89 Identities=25% Similarity=0.307 Sum_probs=64.9
Q ss_pred CCCCCCC-EEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCC
Q psy9773 45 PNIFAGK-TVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVEL 105 (252)
Q Consensus 45 ~~~~~~~-~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~ 105 (252)
....... +++|+|+|.| .- ++.++- .+..+++.+|. .++.++++.+.+...
T Consensus 43 ~~~~~~~~~~lDiGSGaG--fP--------GipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~ 112 (184)
T PF02527_consen 43 PFLPDFGKKVLDIGSGAG--FP--------GIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEY 112 (184)
T ss_dssp GCS-CCCSEEEEETSTTT--TT--------HHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTT
T ss_pred hhhccCCceEEecCCCCC--Ch--------hHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccccc
Confidence 3333333 8999999999 44 444444 23357999999 789999999999444
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+||+|++.-+ ..+..++.-+.++|++||++++.-..
T Consensus 113 ~~~fd~v~aRAv-------~~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 113 RESFDVVTARAV-------APLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp TT-EEEEEEESS-------SSHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred CCCccEEEeehh-------cCHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 489999999664 45667888889999999999987654
No 179
>KOG2904|consensus
Probab=98.26 E-value=8.2e-06 Score=72.00 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=62.7
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccC---C-
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVE---L- 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~---~- 105 (252)
..+..|||+|||+|++.+ ++ +...+...++|+|. +++.+++.++.... .
T Consensus 147 ~~~~~ildlgtGSGaIsl--------sl-l~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~ 217 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISL--------SL-LHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHP 217 (328)
T ss_pred cccceEEEecCCccHHHH--------HH-HhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccc
Confidence 455689999999996555 33 23344568999999 67777766664432 1
Q ss_pred -C-CceeEEEecccccccCCh-------------------------hhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 -P-EKVDIIVSEWMGFYLLHE-------------------------SMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 -~-~~fDlIv~~~~~~~l~~~-------------------------~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
. +++|+++|++- ++.+. ..+..++.-+.|.|+|||.+.+...
T Consensus 218 l~~~~~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 218 LLEGKIDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cccCceeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 2 88999999652 11111 1355666677899999999999875
No 180
>PLN02672 methionine S-methyltransferase
Probab=98.25 E-value=3.7e-06 Score=86.91 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCC-CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC--------------C---
Q psy9773 31 TVRNEAYRAAICDNPN-IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY--------------L--- 91 (252)
Q Consensus 31 ~~~~~~~~~~l~~~~~-~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~--------------~--- 91 (252)
+..+..+.+.+..... ..++.+|||+|||+| .+ ++.++... ..+|+|+|+ .
T Consensus 99 RpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG--~I--------ai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 99 EDWSFTFYEGLNRHPDSIFRDKTVAELGCGNG--WI--------SIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred chhHHHHHHHHHhcccccCCCCEEEEEecchH--HH--------HHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 3445555555432211 124579999999999 65 66665543 358999999 1
Q ss_pred ----------------ceEEEEccccccCCC--CceeEEEecccccccC------------Ch-----------------
Q psy9773 92 ----------------ILEVIQNKIENVELP--EKVDIIVSEWMGFYLL------------HE----------------- 124 (252)
Q Consensus 92 ----------------~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~------------~~----------------- 124 (252)
++.|+++|+.+.... .+||+||+++- +... ++
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~ 247 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGF 247 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCC
Confidence 478999998765432 36999999542 1000 00
Q ss_pred ---h----hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 125 ---S----MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 125 ---~----~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
. -+..++..+.++|+|||++++....
T Consensus 248 ~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 248 VEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred CCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1 2367777888999999999998764
No 181
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.21 E-value=3.4e-06 Score=72.74 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------Cce
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LIL 93 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i 93 (252)
...+...+. ....+++||++|++.|.+.+ +++. .+ ..+++.+|. .+|
T Consensus 47 ~g~~L~~L~---~~~~~k~iLEiGT~~GySal----------~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i 113 (219)
T COG4122 47 TGALLRLLA---RLSGPKRILEIGTAIGYSAL----------WMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRI 113 (219)
T ss_pred HHHHHHHHH---HhcCCceEEEeecccCHHHH----------HHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceE
Confidence 444445453 45678999999999995554 4443 22 357999999 568
Q ss_pred EEEE-ccccccCC---CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 94 EVIQ-NKIENVEL---PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 94 ~~~~-~d~~~~~~---~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.++. +|..+... .++||+|+... ...+...+|..+.++|+|||++++.+.-
T Consensus 114 ~~~~~gdal~~l~~~~~~~fDliFIDa------dK~~yp~~le~~~~lLr~GGliv~DNvl 168 (219)
T COG4122 114 ELLLGGDALDVLSRLLDGSFDLVFIDA------DKADYPEYLERALPLLRPGGLIVADNVL 168 (219)
T ss_pred EEEecCcHHHHHHhccCCCccEEEEeC------ChhhCHHHHHHHHHHhCCCcEEEEeecc
Confidence 8888 47765533 38999998733 2346778899999999999999998754
No 182
>KOG1501|consensus
Probab=98.20 E-value=2e-06 Score=80.11 Aligned_cols=126 Identities=28% Similarity=0.349 Sum_probs=94.2
Q ss_pred HHhccHHHHHHHHHHHHhC----CCCC-CC-CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------
Q psy9773 26 LMLDDTVRNEAYRAAICDN----PNIF-AG-KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------- 90 (252)
Q Consensus 26 ~~l~~~~~~~~~~~~l~~~----~~~~-~~-~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------- 90 (252)
.|+.|..|+.+|+..|... .+.. .| .-|||+|+||| ++ ++.+++.|+.+|+|++.
T Consensus 37 DMl~D~dRNiky~~gi~~tIte~kh~~~~gkv~vLdigtGTG--LL--------SmMAvragaD~vtA~EvfkPM~d~ar 106 (636)
T KOG1501|consen 37 DMLNDSDRNIKYRLGIEKTITEPKHVLDIGKVFVLDIGTGTG--LL--------SMMAVRAGADSVTACEVFKPMVDLAR 106 (636)
T ss_pred HHhhcccccHHHHHHHHHHhcccceeccCceEEEEEccCCcc--HH--------HHHHHHhcCCeEEeehhhchHHHHHH
Confidence 4889989988887776543 2221 22 35899999999 99 99999999989999998
Q ss_pred ---------CceEEEEccccccCCC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCCh
Q psy9773 91 ---------LILEVIQNKIENVELP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSP 159 (252)
Q Consensus 91 ---------~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~ 159 (252)
++|+++.....++... -..|+++...+..-+..+..+..+=.+..++++||...++...+.|+.+....
T Consensus 107 kI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~qlVES~ 186 (636)
T KOG1501|consen 107 KIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQLVEST 186 (636)
T ss_pred HHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEEEehhh
Confidence 6788887766666443 23788877554444445555666666777888999999999999998888776
Q ss_pred hH
Q psy9773 160 EI 161 (252)
Q Consensus 160 ~~ 161 (252)
.+
T Consensus 187 ~l 188 (636)
T KOG1501|consen 187 FL 188 (636)
T ss_pred hh
Confidence 53
No 183
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.19 E-value=6.4e-06 Score=72.71 Aligned_cols=66 Identities=27% Similarity=0.382 Sum_probs=51.7
Q ss_pred HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccC
Q psy9773 40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVE 104 (252)
Q Consensus 40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~ 104 (252)
.+.......++.+|||+|||+| .+ +..+++.+ .+++++|+ .++.++++|+..++
T Consensus 20 ~iv~~~~~~~~~~VLEIG~G~G--~l--------t~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~ 88 (258)
T PRK14896 20 RIVEYAEDTDGDPVLEIGPGKG--AL--------TDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD 88 (258)
T ss_pred HHHHhcCCCCcCeEEEEeCccC--HH--------HHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC
Confidence 3443345677899999999999 77 77777774 57999999 46889999998876
Q ss_pred CCCceeEEEeccc
Q psy9773 105 LPEKVDIIVSEWM 117 (252)
Q Consensus 105 ~~~~fDlIv~~~~ 117 (252)
++ .||.|+++..
T Consensus 89 ~~-~~d~Vv~NlP 100 (258)
T PRK14896 89 LP-EFNKVVSNLP 100 (258)
T ss_pred ch-hceEEEEcCC
Confidence 55 5899999664
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.17 E-value=2.6e-05 Score=69.49 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------Cc-eEE
Q psy9773 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY-----------------LI-LEV 95 (252)
Q Consensus 36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~-----------------~~-i~~ 95 (252)
.+..++..+......-+||||+||.|+..+ -.+...+ +.++.-.|. .. ++|
T Consensus 122 ~i~~ai~~L~~~g~pvrIlDIAaG~GRYvl---------Dal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f 192 (311)
T PF12147_consen 122 LIRQAIARLREQGRPVRILDIAAGHGRYVL---------DALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARF 192 (311)
T ss_pred HHHHHHHHHHhcCCceEEEEeccCCcHHHH---------HHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEE
Confidence 344444443444566799999999998776 2233332 246777777 34 499
Q ss_pred EEccccccCC----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 96 IQNKIENVEL----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 96 ~~~d~~~~~~----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.++|+.+... ...+++++.+.+...+++...+...|..+.++|.|||+|+.+.-..|
T Consensus 193 ~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH 253 (311)
T PF12147_consen 193 EQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH 253 (311)
T ss_pred EecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC
Confidence 9999877632 14579999988766665555567789999999999999998875433
No 185
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.16 E-value=5.6e-06 Score=70.82 Aligned_cols=90 Identities=12% Similarity=0.165 Sum_probs=53.5
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceEEEEc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILEVIQN 98 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~~~~~ 98 (252)
....++...+|||||.|+..+ ..++..++++++||++ .++.+.++
T Consensus 38 ~~l~~~dvF~DlGSG~G~~v~---------~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 38 LNLTPDDVFYDLGSGVGNVVF---------QAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp TT--TT-EEEEES-TTSHHHH---------HHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred hCCCCCCEEEECCCCCCHHHH---------HHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 457788999999999995444 2334466777999999 56778888
Q ss_pred cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
|+.+.+.. ...|+|+++.. .+. +++...|..+...|++|.+++..
T Consensus 109 dfl~~~~~~~~~s~AdvVf~Nn~---~F~-~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 109 DFLDPDFVKDIWSDADVVFVNNT---CFD-PDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp -TTTHHHHHHHGHC-SEEEE--T---TT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred CccccHhHhhhhcCCCEEEEecc---ccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence 88765432 45899999665 223 35666667777889999888754
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.15 E-value=4.2e-06 Score=73.58 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC------------------CceEEEEccccccCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY------------------LILEVIQNKIENVEL 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~ 105 (252)
.....++||+||+++|.+++ .+++ .+ ..+++++|. ++|+++.+++.+.-.
T Consensus 76 ~~~~ak~iLEiGT~~GySal----------~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 76 KLINAKNTMEIGVYTGYSLL----------ATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHhCCCEEEEEeChhhHHHH----------HHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 34567899999999996555 3332 11 247999998 689999999866521
Q ss_pred --------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 --------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 --------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.++||+|+...- ......++..+.++|+|||++++...-
T Consensus 146 ~l~~~~~~~~~fD~iFiDad------K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247)
T PLN02589 146 QMIEDGKYHGTFDFIFVDAD------KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_pred HHHhccccCCcccEEEecCC------HHHhHHHHHHHHHhcCCCeEEEEcCCC
Confidence 258999988432 245667788888999999999987643
No 187
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.14 E-value=1.3e-05 Score=67.05 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-C---------cEEEeeC-------------
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-L---------DHYAPQY------------- 90 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~---------~v~gvD~------------- 90 (252)
...+..+|.+.....++..|||.-||+| ++ .+.++..+. . +++|+|+
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsG--ti--------liEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~ 82 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSG--TI--------LIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK 82 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTS--HH--------HHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCC--HH--------HHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH
Confidence 3456666777777888999999999999 66 444444322 2 2789999
Q ss_pred -----CceEEEEccccccCCC-CceeEEEecccccccCC-h----hhHHHHHHHHhccccCCeEEEeec
Q psy9773 91 -----LILEVIQNKIENVELP-EKVDIIVSEWMGFYLLH-E----SMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 91 -----~~i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~-~----~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+.+.++|+..+++. +++|+|++++-...-.. . .-...++..+.++|++...+++..
T Consensus 83 ~ag~~~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 83 AAGVEDYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp HTT-CGGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred hcccCCceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 4688999999999944 89999999664221111 1 124566788889999954554443
No 188
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.12 E-value=7.9e-06 Score=72.68 Aligned_cols=65 Identities=25% Similarity=0.273 Sum_probs=50.3
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------CceEEEEccccccCCC
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------LILEVIQNKIENVELP 106 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~~i~~~~~d~~~~~~~ 106 (252)
+.......++.+|||+|||+| .+ +..++..+. +|+|+|+ .++.++++|+..++++
T Consensus 34 i~~~l~~~~~~~VLEiG~G~G--~l--------t~~L~~~~~-~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 34 IVDAAGPQPGDNVLEIGPGLG--AL--------TEPLLERAA-KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHhcCCCCcCeEEEeCCCcc--HH--------HHHHHHhCC-cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence 333345678889999999999 66 677777764 8999999 3788999999988765
Q ss_pred Cc-eeEEEecc
Q psy9773 107 EK-VDIIVSEW 116 (252)
Q Consensus 107 ~~-fDlIv~~~ 116 (252)
.. ++.||++.
T Consensus 103 ~~~~~~vv~Nl 113 (272)
T PRK00274 103 ELQPLKVVANL 113 (272)
T ss_pred HcCcceEEEeC
Confidence 32 58888865
No 189
>KOG0822|consensus
Probab=98.10 E-value=8.1e-06 Score=77.58 Aligned_cols=104 Identities=29% Similarity=0.423 Sum_probs=83.4
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC-----------------CceEEEEccccccCCC-Cce
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY-----------------LILEVIQNKIENVELP-EKV 109 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~-----------------~~i~~~~~d~~~~~~~-~~f 109 (252)
-.+|+-+|+|.| .+ |+.++.+++... .++++++. .+++++.+|++.++.| .+.
T Consensus 368 ~tVimvlGaGRG--PL-----v~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRG--PL-----VDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQA 440 (649)
T ss_pred eEEEEEecCCCc--cH-----HHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccccccCCchhhc
Confidence 357899999999 76 455555555322 35788877 7899999999999987 899
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCChhH
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI 161 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~ 161 (252)
|++|+...+.+..++-.+ ..|..+.+.|+|+|+.++...+.|.+|+....+
T Consensus 441 DI~VSELLGSFGDNELSP-ECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l 491 (649)
T KOG0822|consen 441 DIIVSELLGSFGDNELSP-ECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL 491 (649)
T ss_pred cchHHHhhccccCccCCH-HHHHHHHhhcCCCceEccchhhhhhcccccHHH
Confidence 999998776666666544 577888899999999999999999999988764
No 190
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=1.7e-05 Score=66.78 Aligned_cols=100 Identities=17% Similarity=0.276 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcc
Q psy9773 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNK 99 (252)
Q Consensus 36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d 99 (252)
.+.+.+..+.....|++|||+|+|+| +. ++.+++.|++.|++.|+ -.|.+...|
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsg--Lv--------aIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d 135 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSG--LV--------AIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHAD 135 (218)
T ss_pred HHHHHHhcCccccccceeeecccccC--hH--------HHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeecc
Confidence 35566776677888999999999999 88 88899999999999988 345566666
Q ss_pred ccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 100 ~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.. .+..||+|++..+ +.+.....+++.-..++...|-.+++..+.
T Consensus 136 ~~g--~~~~~Dl~LagDl---fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 136 LIG--SPPAFDLLLAGDL---FYNHTEADRLIPWKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ccC--CCcceeEEEeece---ecCchHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 655 3467999998554 333334445555333344455555555554
No 191
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.06 E-value=1.6e-05 Score=69.09 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=63.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-----------------CceEEEEccccccC---CC-Cc
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-----------------LILEVIQNKIENVE---LP-EK 108 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~~-~~ 108 (252)
..+||||||.|..+ ..+|.. +-..++||++ .|+.+++.|+..+. ++ ++
T Consensus 50 pi~lEIGfG~G~~l----------~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~s 119 (227)
T COG0220 50 PIVLEIGFGMGEFL----------VEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGS 119 (227)
T ss_pred cEEEEECCCCCHHH----------HHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCC
Confidence 58999999999443 344444 3468999999 48999999998772 23 59
Q ss_pred eeEEEecccccccCChh--------hHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.|-|+.+.-. +|.. --..++..+.+.|+|||.|.+.+-
T Consensus 120 l~~I~i~FPD---PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 120 LDKIYINFPD---PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred eeEEEEECCC---CCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 9999874332 2222 345788899999999999998763
No 192
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.05 E-value=4.1e-05 Score=73.17 Aligned_cols=95 Identities=19% Similarity=0.162 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-c-CCCcEEEeeC-----------------CceEEEEccccccC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-V-HPLDHYAPQY-----------------LILEVIQNKIENVE-- 104 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~-g~~~v~gvD~-----------------~~i~~~~~d~~~~~-- 104 (252)
...+|.+|||++||.|+=+ ..++. . +...+++.|+ .++.+...|...+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKT----------t~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKT----------TQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA 179 (470)
T ss_pred CCCCCCEEEEeCCCccHHH----------HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh
Confidence 4578899999999999543 33333 2 2247999999 56778888887663
Q ss_pred CCCceeEEEecccc---cccCChhh----------------HHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 LPEKVDIIVSEWMG---FYLLHESM----------------IDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ~~~~fDlIv~~~~~---~~l~~~~~----------------~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++..||.|+++.-. ..+...++ -..+|..+.++|+|||+|+-++++
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 23679999962211 11211111 157888889999999999988875
No 193
>PLN02823 spermine synthase
Probab=98.03 E-value=1.8e-05 Score=72.53 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------------CceEEEEccccccCC-
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY---------------------LILEVIQNKIENVEL- 105 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~---------------------~~i~~~~~d~~~~~~- 105 (252)
.+++||.||+|.| .. +..+.+. +..+++.+|+ ++++++.+|...+-.
T Consensus 103 ~pk~VLiiGgG~G--~~--------~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEG--ST--------AREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK 172 (336)
T ss_pred CCCEEEEECCCch--HH--------HHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh
Confidence 5679999999999 55 4555553 3467999999 467888888887632
Q ss_pred -CCceeEEEecccccc---cCChhhHHHHHH-HHhccccCCeEEEeecc
Q psy9773 106 -PEKVDIIVSEWMGFY---LLHESMIDSVIF-ARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 -~~~fDlIv~~~~~~~---l~~~~~~~~~l~-~l~~~LkpgG~lv~~~~ 149 (252)
.++||+|++...... ....---..++. .+.+.|+|||++++...
T Consensus 173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 268999999642110 000001235666 78899999999987654
No 194
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.03 E-value=2.6e-05 Score=64.22 Aligned_cols=106 Identities=14% Similarity=0.118 Sum_probs=75.4
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC------------CceEEEEcc
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY------------LILEVIQNK 99 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~------------~~i~~~~~d 99 (252)
...+.+.+........|.-||++|.||| .+ +....++| ...+++++. +.++++.+|
T Consensus 33 Ss~lA~~M~s~I~pesglpVlElGPGTG--V~--------TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gd 102 (194)
T COG3963 33 SSILARKMASVIDPESGLPVLELGPGTG--VI--------TKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGD 102 (194)
T ss_pred cHHHHHHHHhccCcccCCeeEEEcCCcc--Hh--------HHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccc
Confidence 4555666665555667789999999999 44 44444444 357999988 678899999
Q ss_pred ccccCC--C----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 100 IENVEL--P----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 100 ~~~~~~--~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.++.. . ..||.|||..-+-.++ .....++|..+...|.+||.++--...
T Consensus 103 a~~l~~~l~e~~gq~~D~viS~lPll~~P-~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 103 AFDLRTTLGEHKGQFFDSVISGLPLLNFP-MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred hhhHHHHHhhcCCCeeeeEEeccccccCc-HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 988852 1 5699999944322222 224668899999999999999865543
No 195
>KOG2940|consensus
Probab=98.02 E-value=8e-06 Score=70.49 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=66.9
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------C--ceEEEEccccccCCC-CceeEEE
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------L--ILEVIQNKIENVELP-EKVDIIV 113 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~--~i~~~~~d~~~~~~~-~~fDlIv 113 (252)
...++|+|||-| .+ +..+...+..+++-+|. + ......+|-..+++. +++|+|+
T Consensus 73 fp~a~diGcs~G--~v--------~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLii 142 (325)
T KOG2940|consen 73 FPTAFDIGCSLG--AV--------KRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLII 142 (325)
T ss_pred Ccceeecccchh--hh--------hHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhh
Confidence 357999999999 66 55555555667777776 2 244567888888877 8999999
Q ss_pred ecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++..+|+. .++...+.++...|||+|.|+-+-
T Consensus 143 sSlslHW~---NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 143 SSLSLHWT---NDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhhhhhh---ccCchHHHHHHHhcCCCccchhHH
Confidence 98876666 677788899999999999998653
No 196
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.01 E-value=6e-05 Score=66.20 Aligned_cols=64 Identities=31% Similarity=0.421 Sum_probs=48.6
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL 105 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~ 105 (252)
+.......++.+|||+|||+| .+ +..++..+ ..++++|+ .++.++.+|+..+++
T Consensus 21 i~~~~~~~~~~~VLEiG~G~G--~l--------t~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 21 IVEAANVLEGDVVLEIGPGLG--AL--------TEPLLKRA-KKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHhcCCCCcCEEEEeCCCCC--HH--------HHHHHHhC-CcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence 333345667899999999999 77 77777776 46999999 468899999988876
Q ss_pred CCcee---EEEecc
Q psy9773 106 PEKVD---IIVSEW 116 (252)
Q Consensus 106 ~~~fD---lIv~~~ 116 (252)
+ .+| +|+++.
T Consensus 90 ~-~~d~~~~vvsNl 102 (253)
T TIGR00755 90 P-DFPKQLKVVSNL 102 (253)
T ss_pred h-HcCCcceEEEcC
Confidence 5 456 777754
No 197
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=2.2e-05 Score=67.54 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=62.6
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCCCc-ee
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELPEK-VD 110 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~~~-fD 110 (252)
+.+++|||+|.| .- ++.++- .+..+++-+|. .+++++++.+.++..... ||
T Consensus 68 ~~~~~DIGSGaG--fP--------GipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D 137 (215)
T COG0357 68 AKRVLDIGSGAG--FP--------GIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYD 137 (215)
T ss_pred CCEEEEeCCCCC--Cc--------hhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCc
Confidence 689999999999 44 444442 22346999998 779999999999975544 99
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+|+|.-+ ..+..++.-+..++++||.++...
T Consensus 138 ~vtsRAv-------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 138 VVTSRAV-------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred EEEeehc-------cchHHHHHHHHHhcccCCcchhhh
Confidence 9998554 466777888899999999876443
No 198
>KOG1331|consensus
Probab=98.01 E-value=6.2e-06 Score=73.07 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------Cce-EEEEccccccCCC-CceeEEEe
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LIL-EVIQNKIENVELP-EKVDIIVS 114 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i-~~~~~d~~~~~~~-~~fDlIv~ 114 (252)
...+..+||+|||.|.... .. +...++|+|. .+. .+..+|+..++.+ .+||.+++
T Consensus 43 ~~~gsv~~d~gCGngky~~------------~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls 109 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG------------VN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS 109 (293)
T ss_pred cCCcceeeecccCCcccCc------------CC-CcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence 4558999999999993322 11 2234667776 344 6888999999888 88999999
Q ss_pred cccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+.||+........++.++.+.|+|||...+..
T Consensus 110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 8888999888788899999999999999977655
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.00 E-value=1.4e-05 Score=74.56 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=62.7
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCC-CCcee
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVEL-PEKVD 110 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-~~~fD 110 (252)
+.+|||++||+| .+ ++.++. .++..|+++|+ .++.+.++|+..+.. .+.||
T Consensus 58 ~~~vLDl~aGsG--~~--------~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD 127 (382)
T PRK04338 58 RESVLDALSASG--IR--------GIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFD 127 (382)
T ss_pred CCEEEECCCccc--HH--------HHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCC
Confidence 568999999999 77 777655 45568999999 345688899877643 46799
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+|++++. .....++..+.+.+++||+++++..
T Consensus 128 ~V~lDP~-------Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 128 VVDIDPF-------GSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred EEEECCC-------CCcHHHHHHHHHHhcCCCEEEEEec
Confidence 9998763 2334567775677899999999853
No 200
>KOG3178|consensus
Probab=97.99 E-value=4.1e-05 Score=69.72 Aligned_cols=86 Identities=19% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCCCceeEEEecc
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELPEKVDIIVSEW 116 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~~~fDlIv~~~ 116 (252)
-...+|+|.|.|+.+- .+.... .++-++++ +.|..+-+|+.+. .| +-|+||+.|
T Consensus 178 v~~avDvGgGiG~v~k----------~ll~~f-p~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~P-~~daI~mkW 244 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLK----------NLLSKY-PHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-TP-KGDAIWMKW 244 (342)
T ss_pred CceEEEcCCcHhHHHH----------HHHHhC-CCCceeecCHHHHHhhhhhhcCCcceeccccccc-CC-CcCeEEEEe
Confidence 3789999999994443 333332 23555555 2367777787666 33 457999999
Q ss_pred cccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++|++.+. ++.++|+++...|+|||.+++..+
T Consensus 245 iLhdwtDe-dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 245 ILHDWTDE-DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred ecccCChH-HHHHHHHHHHHhCCCCCEEEEEec
Confidence 99998665 799999999999999999998775
No 201
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.96 E-value=2.4e-05 Score=66.65 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------LILEVIQNKIENVELP 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~ 106 (252)
...+|.+|||+.||.| .+ ++.+++ ..++.|+|+|+ .++..+++|...+...
T Consensus 98 ~v~~~e~VlD~faGIG--~f--------~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~ 167 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIG--PF--------SLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPE 167 (200)
T ss_dssp C--TT-EEEETT-TTT--TT--------HHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---T
T ss_pred cCCcceEEEEccCCcc--HH--------HHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCc
Confidence 3678999999999999 66 677777 33467999999 6788999999998767
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
+.||-|++.... ....+|..+.+++++||++-
T Consensus 168 ~~~drvim~lp~-------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPE-------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TS-------SGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChH-------HHHHHHHHHHHHhcCCcEEE
Confidence 889999885431 12246677788889999874
No 202
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.95 E-value=3.3e-05 Score=70.61 Aligned_cols=77 Identities=14% Similarity=0.053 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-CCceeEEEec
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-PEKVDIIVSE 115 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-~~~fDlIv~~ 115 (252)
..+|.++|||||++| -+ +..+.++|+ +|+|||. ++|..+..|...+.. .+.+|+++|.
T Consensus 209 ~~~g~~vlDLGAsPG--GW--------T~~L~~rG~-~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcD 277 (357)
T PRK11760 209 LAPGMRAVDLGAAPG--GW--------TYQLVRRGM-FVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCD 277 (357)
T ss_pred cCCCCEEEEeCCCCc--HH--------HHHHHHcCC-EEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence 468899999999999 66 778888886 7999999 678888888877765 4789999997
Q ss_pred ccccccCChhhHHHHHHHHhccccCC
Q psy9773 116 WMGFYLLHESMIDSVIFARDKFLKPE 141 (252)
Q Consensus 116 ~~~~~l~~~~~~~~~l~~l~~~Lkpg 141 (252)
.+ ..+..+..-+.++|..|
T Consensus 278 mv-------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 278 MV-------EKPARVAELMAQWLVNG 296 (357)
T ss_pred cc-------cCHHHHHHHHHHHHhcC
Confidence 65 34556667777777665
No 203
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.92 E-value=4.4e-05 Score=70.48 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=58.4
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-------
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP------- 106 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~------- 106 (252)
.+|||+|||+| .+ ++.+++. +.+|+|+|+ .++.++++|+.++...
T Consensus 199 ~~vlDl~~G~G--~~--------sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 267 (353)
T TIGR02143 199 GDLLELYCGNG--NF--------SLALAQN-FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREF 267 (353)
T ss_pred CcEEEEecccc--HH--------HHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccc
Confidence 47999999999 88 7777665 468999999 4688999998764211
Q ss_pred ----------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 ----------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ----------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..||+|+.++-- ......++..+.+ |++++|+++..
T Consensus 268 ~~~~~~~~~~~~~d~v~lDPPR-----~G~~~~~l~~l~~---~~~ivYvsC~p 313 (353)
T TIGR02143 268 RRLKGIDLKSYNCSTIFVDPPR-----AGLDPDTCKLVQA---YERILYISCNP 313 (353)
T ss_pred ccccccccccCCCCEEEECCCC-----CCCcHHHHHHHHc---CCcEEEEEcCH
Confidence 137999997742 2223455555543 79999999865
No 204
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.92 E-value=6.3e-05 Score=67.37 Aligned_cols=94 Identities=18% Similarity=0.076 Sum_probs=67.6
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccCCC--
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVELP-- 106 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~~~-- 106 (252)
++||-+|.|.| .. ...+.++. ..+++.+|+ +|+.++..|...+-..
T Consensus 78 k~VLiiGgGdG--~t--------lRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDG--GT--------LREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE 147 (282)
T ss_pred CeEEEECCCcc--HH--------HHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC
Confidence 69999999999 44 44566654 468999998 6778888888877432
Q ss_pred CceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeeccccccC
Q psy9773 107 EKVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYKCILHSA 154 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~~~~~ 154 (252)
.+||+|++......-+... --..++..+++.|+++|+++..+.+.+..
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~ 196 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ 196 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence 5799999955432111000 23678999999999999999996554433
No 205
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.90 E-value=5.7e-05 Score=69.96 Aligned_cols=81 Identities=12% Similarity=0.050 Sum_probs=58.4
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--------
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL-------- 105 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-------- 105 (252)
.+|||++||+| .+ ++.+++. +++|+|+|+ .++.++.+|+.++..
T Consensus 208 ~~vLDl~~G~G--~~--------sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~ 276 (362)
T PRK05031 208 GDLLELYCGNG--NF--------TLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREF 276 (362)
T ss_pred CeEEEEecccc--HH--------HHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccc
Confidence 57999999999 77 7766655 568999999 478899999876411
Q ss_pred ---------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 ---------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ---------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+||+|+.++-- ......++..+.+ |++++|+++..
T Consensus 277 ~~~~~~~~~~~~~D~v~lDPPR-----~G~~~~~l~~l~~---~~~ivyvSC~p 322 (362)
T PRK05031 277 NRLKGIDLKSYNFSTIFVDPPR-----AGLDDETLKLVQA---YERILYISCNP 322 (362)
T ss_pred cccccccccCCCCCEEEECCCC-----CCCcHHHHHHHHc---cCCEEEEEeCH
Confidence 1148999997742 1223455555543 78999998865
No 206
>KOG3420|consensus
Probab=97.90 E-value=4.2e-05 Score=61.72 Aligned_cols=68 Identities=21% Similarity=0.230 Sum_probs=55.5
Q ss_pred HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc
Q psy9773 40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV 103 (252)
Q Consensus 40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~ 103 (252)
.|........|++++|+|||.| .+ +...+..++..|+|+|+ -++.++++|+.++
T Consensus 39 ~Ih~TygdiEgkkl~DLgcgcG--mL--------s~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl 108 (185)
T KOG3420|consen 39 TIHNTYGDIEGKKLKDLGCGCG--ML--------SIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL 108 (185)
T ss_pred HHHhhhccccCcchhhhcCchh--hh--------HHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch
Confidence 3444456689999999999999 77 76666677788999999 4678999999999
Q ss_pred CCC-CceeEEEeccc
Q psy9773 104 ELP-EKVDIIVSEWM 117 (252)
Q Consensus 104 ~~~-~~fDlIv~~~~ 117 (252)
.+. +.||.++.++-
T Consensus 109 e~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 109 ELKGGIFDTAVINPP 123 (185)
T ss_pred hccCCeEeeEEecCC
Confidence 777 78999998764
No 207
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.89 E-value=3e-05 Score=69.87 Aligned_cols=66 Identities=29% Similarity=0.358 Sum_probs=50.2
Q ss_pred HHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccc
Q psy9773 39 AAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKI 100 (252)
Q Consensus 39 ~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~ 100 (252)
..+.......++.+|||+|||+| .+ +..++..+ .+|+|+|+ .+++++++|+
T Consensus 26 ~~Iv~~~~~~~~~~VLEIG~G~G--~L--------T~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 26 DKIVEKAAIKPTDTVLEIGPGTG--NL--------TEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred HHHHHhcCCCCcCEEEEecCchH--HH--------HHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 33444456678899999999999 66 66666664 57999999 3588999999
Q ss_pred cccCCCCceeEEEecc
Q psy9773 101 ENVELPEKVDIIVSEW 116 (252)
Q Consensus 101 ~~~~~~~~fDlIv~~~ 116 (252)
.....+ .||+|+++.
T Consensus 95 l~~~~~-~~d~VvaNl 109 (294)
T PTZ00338 95 LKTEFP-YFDVCVANV 109 (294)
T ss_pred hhhccc-ccCEEEecC
Confidence 877553 689998855
No 208
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.87 E-value=3.3e-05 Score=71.83 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=65.2
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEeeC-----------------CceEEEEccccccCCC--Cc
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAPQY-----------------LILEVIQNKIENVELP--EK 108 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~ 108 (252)
+.+|||+.||+| .+ ++.++.. |+..|+++|+ .++.++++|+..+... ..
T Consensus 45 ~~~vLD~faGsG--~r--------gir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~ 114 (374)
T TIGR00308 45 YINIADALSASG--IR--------AIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRK 114 (374)
T ss_pred CCEEEECCCchh--HH--------HHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCC
Confidence 468999999999 88 8888775 6789999999 3467888888877433 57
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
||+|+.++. ..+..++..+.+.+++||+|+++.
T Consensus 115 fDvIdlDPf-------Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 115 FHVIDIDPF-------GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCEEEeCCC-------CCcHHHHHHHHHhcccCCEEEEEe
Confidence 999988662 233467888888999999999985
No 209
>KOG1661|consensus
Probab=97.87 E-value=3.6e-05 Score=65.55 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=57.6
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCC--CcEEEeeC---------------------------CceEE
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHP--LDHYAPQY---------------------------LILEV 95 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~--~~v~gvD~---------------------------~~i~~ 95 (252)
+..+|.+.||+|+||| .| +-.++ ..++ ..+.|||. .++.+
T Consensus 79 ~L~pG~s~LdvGsGSG--YL--------t~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSG--YL--------TACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred hhccCcceeecCCCcc--HH--------HHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 4789999999999999 55 44444 2333 23377776 56778
Q ss_pred EEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 96 IQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 96 ~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+.+|....... .+||.|++--. ...+..++...|+|||++++-.
T Consensus 149 vvGDgr~g~~e~a~YDaIhvGAa---------a~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVGAA---------ASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccCCccCCcceEEEccC---------ccccHHHHHHhhccCCeEEEee
Confidence 89999888666 88999988321 1223344556778888877643
No 210
>KOG3191|consensus
Probab=97.82 E-value=0.00017 Score=60.18 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=61.6
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhh-cC-CCcEEEeeC----------------CceEEEEccccccCCCCceeE
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VH-PLDHYAPQY----------------LILEVIQNKIENVELPEKVDI 111 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g-~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~fDl 111 (252)
...+|++|||+| .. +-++++ .+ ..-+.++|+ -++..++.|+.+--.+++.|+
T Consensus 44 ~~i~lEIG~GSG--vv--------stfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDv 113 (209)
T KOG3191|consen 44 PEICLEIGCGSG--VV--------STFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDV 113 (209)
T ss_pred ceeEEEecCCcc--hH--------HHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccE
Confidence 678999999999 55 445444 33 245778898 346778888876655588999
Q ss_pred EEecccccc------------------cCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 112 IVSEWMGFY------------------LLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 112 Iv~~~~~~~------------------l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++.++-.-- -....-...++..+-.+|.|.|.||+....
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 887542100 011112566777778899999999987643
No 211
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.82 E-value=0.00023 Score=63.31 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=43.7
Q ss_pred CceEEEEccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 91 LILEVIQNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.++....||+..+-.+ ++||+|+.. +++.-..++...|..+.++|||||+.|=..|-.|
T Consensus 144 ~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLly 206 (270)
T PF07942_consen 144 SNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLY 206 (270)
T ss_pred CceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEEecCCccc
Confidence 3566777888777433 589999873 5566677899999999999999996664444333
No 212
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.73 E-value=5.9e-05 Score=66.26 Aligned_cols=93 Identities=18% Similarity=0.058 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccCC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVEL 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~~ 105 (252)
..+++||=||.|.| .. +..+.+.. ..+++.+|+ ++++++.+|...+-.
T Consensus 75 ~~p~~VLiiGgG~G--~~--------~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~ 144 (246)
T PF01564_consen 75 PNPKRVLIIGGGDG--GT--------ARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK 144 (246)
T ss_dssp SST-EEEEEESTTS--HH--------HHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH
T ss_pred CCcCceEEEcCCCh--hh--------hhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH
Confidence 36799999999999 55 45555554 468999999 488999999987733
Q ss_pred --CC-ceeEEEecccccccCCh-hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 --PE-KVDIIVSEWMGFYLLHE-SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 --~~-~fDlIv~~~~~~~l~~~-~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.. +||+|+........+.. ---..++..+.+.|+|||+++....+
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 25 89999995432111110 12357889999999999999988744
No 213
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00014 Score=68.90 Aligned_cols=90 Identities=20% Similarity=0.108 Sum_probs=69.4
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC-
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP- 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~- 106 (252)
....++.++||+-||.| ++ ++.++.. .++|+|+++ .++.|+.+++..+...
T Consensus 289 ~~~~~~~~vlDlYCGvG--~f--------~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 289 LELAGGERVLDLYCGVG--TF--------GLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW 357 (432)
T ss_pred HhhcCCCEEEEeccCCC--hh--------hhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhc
Confidence 45567789999999999 88 8888866 478999999 6699999999888544
Q ss_pred ---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 107 ---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 107 ---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
..+|+|+.++--..+ -..++..+ ..++|-.++|++++..
T Consensus 358 ~~~~~~d~VvvDPPR~G~-----~~~~lk~l-~~~~p~~IvYVSCNP~ 399 (432)
T COG2265 358 WEGYKPDVVVVDPPRAGA-----DREVLKQL-AKLKPKRIVYVSCNPA 399 (432)
T ss_pred cccCCCCEEEECCCCCCC-----CHHHHHHH-HhcCCCcEEEEeCCHH
Confidence 478999987743333 23455555 5569999999998753
No 214
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.70 E-value=0.00012 Score=66.06 Aligned_cols=107 Identities=18% Similarity=0.107 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHh------hcCCCcEEEeeC-------------------
Q psy9773 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT------KVHPLDHYAPQY------------------- 90 (252)
Q Consensus 36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a------~~g~~~v~gvD~------------------- 90 (252)
.+.+.+.......++.+|||.+||+|+.++ +..-. .....+++|+|+
T Consensus 33 ~i~~l~~~~~~~~~~~~VlDPacGsG~fL~--------~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 33 EIVDLMVKLLNPKKGDSVLDPACGSGGFLV--------AAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp HHHHHHHHHHTT-TTEEEEETT-TTSHHHH--------HHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred HHHHHHHhhhhccccceeechhhhHHHHHH--------HHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 344444444456777899999999994443 22110 123357999999
Q ss_pred CceEEEEccccccCCC---CceeEEEeccccccc--C----------------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 91 LILEVIQNKIENVELP---EKVDIIVSEWMGFYL--L----------------HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l--~----------------~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
....+..+|....+.. ..||+|++++-.... . ....-..++..+.+.|++||++.+..+
T Consensus 105 ~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 105 SNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp BGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 2345777776555432 589999996543222 0 001123477778899999999877666
Q ss_pred c
Q psy9773 150 I 150 (252)
Q Consensus 150 ~ 150 (252)
.
T Consensus 185 ~ 185 (311)
T PF02384_consen 185 N 185 (311)
T ss_dssp H
T ss_pred c
Confidence 4
No 215
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.69 E-value=9.5e-05 Score=71.43 Aligned_cols=91 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccC--CC-C
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVE--LP-E 107 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~ 107 (252)
.+..+||||||.|..++ .+|. .+-..++|+|+ .|+.+++.|+..+. ++ +
T Consensus 347 ~~p~~lEIG~G~G~~~~----------~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~ 416 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFI----------NQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNN 416 (506)
T ss_pred CCceEEEECCCchHHHH----------HHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcc
Confidence 45789999999994443 4444 33468999999 57788888875442 33 7
Q ss_pred ceeEEEeccccccc--CChh---hHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYL--LHES---MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l--~~~~---~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
++|.|+.+.-.-+. .|.. --..++..+.++|+|||.+.+.+-
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD 463 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD 463 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence 89999874432211 0111 345788899999999999998764
No 216
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00034 Score=61.84 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=56.8
Q ss_pred HHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccc
Q psy9773 38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIEN 102 (252)
Q Consensus 38 ~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~ 102 (252)
.+.+.......++..||+||+|.| .+ +..+++.+ .+|+++++ .+++++.+|+-.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~G--aL--------T~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk 87 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLG--AL--------TEPLLERA-ARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALK 87 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCC--HH--------HHHHHhhc-CeEEEEEeCHHHHHHHHHhcccccceEEEeCchhc
Confidence 344445566677899999999999 77 77888886 46999999 678999999999
Q ss_pred cCCCC--ceeEEEeccccccc
Q psy9773 103 VELPE--KVDIIVSEWMGFYL 121 (252)
Q Consensus 103 ~~~~~--~fDlIv~~~~~~~l 121 (252)
..++. .++.|+++. .+.+
T Consensus 88 ~d~~~l~~~~~vVaNl-PY~I 107 (259)
T COG0030 88 FDFPSLAQPYKVVANL-PYNI 107 (259)
T ss_pred CcchhhcCCCEEEEcC-CCcc
Confidence 98885 788998855 3444
No 217
>KOG1663|consensus
Probab=97.64 E-value=0.00018 Score=62.09 Aligned_cols=91 Identities=14% Similarity=0.070 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC--
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL-- 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~-- 105 (252)
....++++||||.=||.+.+ +..++-....+|+++|+ +.|+++++...+.-.
T Consensus 70 ~~~~ak~~lelGvfTGySaL--------~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSAL--------AVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDEL 141 (237)
T ss_pred HHhCCceEEEEecccCHHHH--------HHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHH
Confidence 35677899999988886666 44333322357999999 778999888755411
Q ss_pred -----CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 -----PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 -----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.++||++|... +.........++.++||+||++++....
T Consensus 142 ~~~~~~~tfDfaFvDa------dK~nY~~y~e~~l~Llr~GGvi~~DNvl 185 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA------DKDNYSNYYERLLRLLRVGGVIVVDNVL 185 (237)
T ss_pred HhcCCCCceeEEEEcc------chHHHHHHHHHHHhhcccccEEEEeccc
Confidence 27899998722 2245557888889999999999998743
No 218
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.62 E-value=0.00023 Score=64.92 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=38.1
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------C-----ceEEEE-ccccccC----
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------L-----ILEVIQ-NKIENVE---- 104 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------~-----~i~~~~-~d~~~~~---- 104 (252)
.+.++||||||+|++.. +++++....+++|+|+ . +|.+.. .+...+.
T Consensus 114 ~~~~vLDIGtGag~I~~---------lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~ 184 (321)
T PRK11727 114 ANVRVLDIGVGANCIYP---------LIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII 184 (321)
T ss_pred CCceEEEecCCccHHHH---------HHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc
Confidence 45799999999994433 3333333357999999 2 455543 3333321
Q ss_pred C-CCceeEEEeccc
Q psy9773 105 L-PEKVDIIVSEWM 117 (252)
Q Consensus 105 ~-~~~fDlIv~~~~ 117 (252)
. .+.||+|+|++-
T Consensus 185 ~~~~~fDlivcNPP 198 (321)
T PRK11727 185 HKNERFDATLCNPP 198 (321)
T ss_pred ccCCceEEEEeCCC
Confidence 1 268999999875
No 219
>KOG1269|consensus
Probab=97.60 E-value=8.4e-05 Score=68.80 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~ 106 (252)
..+.++..++|+|||.|.+ +.+.+......++|++. ....++.+|+..-+++
T Consensus 106 ~~~~~~~~~~~~~~g~~~~----------~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fe 175 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGP----------SRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFE 175 (364)
T ss_pred hcCcccccccccCcCcCch----------hHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCC
Confidence 3567778999999999944 44555544456888887 3344577888888887
Q ss_pred -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+.||.+.+..+.+|. +++..++.++.++++|||+++...
T Consensus 176 dn~fd~v~~ld~~~~~---~~~~~~y~Ei~rv~kpGG~~i~~e 215 (364)
T KOG1269|consen 176 DNTFDGVRFLEVVCHA---PDLEKVYAEIYRVLKPGGLFIVKE 215 (364)
T ss_pred ccccCcEEEEeecccC---CcHHHHHHHHhcccCCCceEEeHH
Confidence 899999887766666 888999999999999999999765
No 220
>PRK00536 speE spermidine synthase; Provisional
Probab=97.60 E-value=0.00029 Score=62.50 Aligned_cols=85 Identities=18% Similarity=-0.086 Sum_probs=60.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------CceEEEEccccccCCC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------------LILEVIQNKIENVELP 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------------~~i~~~~~d~~~~~~~ 106 (252)
..+++||=+|.|.| .. .....++. .+|+-||+ +|++++.. +.+ ...
T Consensus 71 ~~pk~VLIiGGGDG--g~--------~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~ 137 (262)
T PRK00536 71 KELKEVLIVDGFDL--EL--------AHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDI 137 (262)
T ss_pred CCCCeEEEEcCCch--HH--------HHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccC
Confidence 55689999999999 43 44666664 48999999 56666641 111 112
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
++||+||+... + ...+.+.+++.|+|||+++....+.+.
T Consensus 138 ~~fDVIIvDs~----~----~~~fy~~~~~~L~~~Gi~v~Qs~sp~~ 176 (262)
T PRK00536 138 KKYDLIICLQE----P----DIHKIDGLKRMLKEDGVFISVAKHPLL 176 (262)
T ss_pred CcCCEEEEcCC----C----ChHHHHHHHHhcCCCcEEEECCCCccc
Confidence 68999998642 1 245678889999999999998766543
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.59 E-value=0.00053 Score=59.13 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=65.3
Q ss_pred HHHHHHHHhC---CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------CceEE
Q psy9773 35 EAYRAAICDN---PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------LILEV 95 (252)
Q Consensus 35 ~~~~~~l~~~---~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------~~i~~ 95 (252)
..+..++... .++.+|.+||-||+++|. +. |...--.| ...|+|++. +||--
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGT-TV--------SHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiP 126 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGT-TV--------SHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIP 126 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSH-HH--------HHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEE
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCC-cc--------chhhhccCCCCcEEEEEecchhHHHHHHHhccCCceee
Confidence 3455555432 467889999999999992 22 33333344 247999999 78887
Q ss_pred EEccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 96 IQNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 96 ~~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+-+|++....- +.+|+|++.-. ...+..-++.++...||+||.+++....
T Consensus 127 Il~DAr~P~~Y~~lv~~VDvI~~DVa-----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa 180 (229)
T PF01269_consen 127 ILEDARHPEKYRMLVEMVDVIFQDVA-----QPDQARIAALNARHFLKPGGHLIISIKA 180 (229)
T ss_dssp EES-TTSGGGGTTTS--EEEEEEE-S-----STTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred eeccCCChHHhhcccccccEEEecCC-----ChHHHHHHHHHHHhhccCCcEEEEEEec
Confidence 88898755321 78999988543 2335666777778899999999988654
No 222
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.58 E-value=0.0014 Score=49.28 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=56.0
Q ss_pred EEEEcCCcCchhhhhccCccchHHHhhcCC--CcEEEeeC----------Cc-------eEEEEccccc--cCCCC--ce
Q psy9773 53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHP--LDHYAPQY----------LI-------LEVIQNKIEN--VELPE--KV 109 (252)
Q Consensus 53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~--~~v~gvD~----------~~-------i~~~~~d~~~--~~~~~--~f 109 (252)
++|+|||+| .. . .+..... ..++++|+ .. +.+..++... +++.. .|
T Consensus 52 ~ld~~~g~g--~~--------~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (257)
T COG0500 52 VLDIGCGTG--RL--------A-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASF 120 (257)
T ss_pred eEEecCCcC--HH--------H-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCce
Confidence 999999999 43 2 2222211 25777777 11 4677778776 55553 79
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|++.+....++. ....++..+.+.|+|+|.+++....
T Consensus 121 d~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 121 DLVISLLVLHLL----PPAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eEEeeeeehhcC----CHHHHHHHHHHhcCCCcEEEEEecc
Confidence 999433322222 2778899999999999999988765
No 223
>KOG1709|consensus
Probab=97.57 E-value=0.00043 Score=59.38 Aligned_cols=90 Identities=24% Similarity=0.333 Sum_probs=68.6
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCC--C-C
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVEL--P-E 107 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~--~-~ 107 (252)
..+|.|||.||-|-| +. .-....+.+..-+.|+. .++..+.+-.++... + +
T Consensus 99 ~tkggrvLnVGFGMg--Ii--------dT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~ 168 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMG--II--------DTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDK 168 (271)
T ss_pred hhCCceEEEeccchH--HH--------HHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhcccccc
Confidence 488999999999999 77 66666666666777777 677777777766632 2 7
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.||.|+-...+ ++-.++..+...+.++|||+|.+-+-..
T Consensus 169 ~FDGI~yDTy~---e~yEdl~~~hqh~~rLLkP~gv~SyfNg 207 (271)
T KOG1709|consen 169 HFDGIYYDTYS---ELYEDLRHFHQHVVRLLKPEGVFSYFNG 207 (271)
T ss_pred CcceeEeechh---hHHHHHHHHHHHHhhhcCCCceEEEecC
Confidence 89999875543 3346888999999999999999865543
No 224
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.56 E-value=0.0004 Score=69.73 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCC-CCCCEEEEEcCCcCchhh-hhcc--------Cccc-----------------hHH--H---hh--
Q psy9773 34 NEAYRAAICDNPNI-FAGKTVLDVGTGTGKSIL-LQGH--------GVDH-----------------HSF--C---TK-- 79 (252)
Q Consensus 34 ~~~~~~~l~~~~~~-~~~~~VLDlGcGtG~~~l-l~~~--------~v~~-----------------s~~--~---a~-- 79 (252)
...+..+|+....- .++..++|.+||+| ++ +.++ |..- .+. + .+
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSG--TilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSG--TLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCcc--HHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 45566666665554 56789999999999 66 1111 1100 000 0 00
Q ss_pred --cCCCcEEEeeC------------------CceEEEEccccccCCC---CceeEEEeccccc-ccCChhhHHHHHHHHh
Q psy9773 80 --VHPLDHYAPQY------------------LILEVIQNKIENVELP---EKVDIIVSEWMGF-YLLHESMIDSVIFARD 135 (252)
Q Consensus 80 --~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~-~l~~~~~~~~~l~~l~ 135 (252)
....+++|+|+ ..+.+.++|+.+++.+ ++||+|++++-.. .+....++..+...+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 01126999999 4588999999988654 4699999976421 1222234444444443
Q ss_pred ccc---cCCeEEEeecc
Q psy9773 136 KFL---KPEGVMYPYKC 149 (252)
Q Consensus 136 ~~L---kpgG~lv~~~~ 149 (252)
+.| .+|+.+++.++
T Consensus 332 ~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 332 RRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHhCCCCeEEEEeC
Confidence 333 48888877665
No 225
>KOG0820|consensus
Probab=97.55 E-value=0.00031 Score=62.17 Aligned_cols=70 Identities=24% Similarity=0.280 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEE
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVI 96 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~ 96 (252)
......|...+.+.++..||++|.||| .+ +..+...| ++|+|+++ +..+++
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTG--nL--------T~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTG--NL--------TVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCC--HH--------HHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 334555666688999999999999999 77 77888876 67999998 568899
Q ss_pred EccccccCCCCceeEEEecc
Q psy9773 97 QNKIENVELPEKVDIIVSEW 116 (252)
Q Consensus 97 ~~d~~~~~~~~~fDlIv~~~ 116 (252)
.+|....++| .||++|++.
T Consensus 113 ~gD~lK~d~P-~fd~cVsNl 131 (315)
T KOG0820|consen 113 HGDFLKTDLP-RFDGCVSNL 131 (315)
T ss_pred ecccccCCCc-ccceeeccC
Confidence 9999888765 688888833
No 226
>KOG4589|consensus
Probab=97.55 E-value=0.00031 Score=58.99 Aligned_cols=94 Identities=22% Similarity=0.231 Sum_probs=62.0
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CC-CcEEEeeC------CceEEEEc-cccccC--------CC-
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HP-LDHYAPQY------LILEVIQN-KIENVE--------LP- 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~-~~v~gvD~------~~i~~~~~-d~~~~~--------~~- 106 (252)
..+.++.+|||+||..| .+ +..+.+. ++ ..|.|||+ ..++++++ |+++.. .|
T Consensus 65 ~~l~p~~~VlD~G~APG--sW--------sQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 65 RFLRPEDTVLDCGAAPG--SW--------SQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred cccCCCCEEEEccCCCC--hH--------HHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhCCC
Confidence 45678999999999999 76 6666553 23 57999999 55667776 666542 23
Q ss_pred CceeEEEecccccc-----cCChhh---HHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFY-----LLHESM---IDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~-----l~~~~~---~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.++|+|++.+.... ..|... ...++.-....+.|+|.|++-.
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~ 184 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL 184 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence 67999999654211 111111 1223334457788999999764
No 227
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.45 E-value=0.0004 Score=63.68 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC-C
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP-E 107 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~ 107 (252)
...|.+|||+-||.| .+ ++.+++.|..+|+|+|+ ..+..+++|....... +
T Consensus 186 v~~GE~V~DmFAGVG--pf--------si~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~ 255 (341)
T COG2520 186 VKEGETVLDMFAGVG--PF--------SIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELG 255 (341)
T ss_pred hcCCCEEEEccCCcc--cc--------hhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccc
Confidence 456999999999999 77 88888888666999999 4588999999999877 8
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+|-|++... .....++..+.+++++||++-.....
T Consensus 256 ~aDrIim~~p-------~~a~~fl~~A~~~~k~~g~iHyy~~~ 291 (341)
T COG2520 256 VADRIIMGLP-------KSAHEFLPLALELLKDGGIIHYYEFV 291 (341)
T ss_pred cCCEEEeCCC-------CcchhhHHHHHHHhhcCcEEEEEecc
Confidence 8999988443 23345666777888999999776644
No 228
>PTZ00357 methyltransferase; Provisional
Probab=97.40 E-value=0.00052 Score=67.50 Aligned_cols=103 Identities=24% Similarity=0.243 Sum_probs=73.7
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC--------------------------CceEEEEccccc
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY--------------------------LILEVIQNKIEN 102 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~--------------------------~~i~~~~~d~~~ 102 (252)
..|+-+|+|.| .| |+.++.++. .+. .++++|+. +.++++..|++.
T Consensus 702 vVImVVGAGRG--PL-----VdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 702 LHLVLLGCGRG--PL-----IDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred EEEEEEcCCcc--HH-----HHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 36899999999 66 444444444 222 35778777 137999999999
Q ss_pred cCCC------------CceeEEEecccccccCChhhHHHHHHHHhccccC----Ce-------EEEeeccccccCCCCCh
Q psy9773 103 VELP------------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKP----EG-------VMYPYKCILHSAPSYSP 159 (252)
Q Consensus 103 ~~~~------------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkp----gG-------~lv~~~~~~~~~~~~~~ 159 (252)
+..+ +++|+||+...+.+-.++-.+ ..|..+.+.||+ +| +.|+...+.|.+|+...
T Consensus 775 W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNELSP-ECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSp 853 (1072)
T PTZ00357 775 IATAAENGSLTLPADFGLCDLIVSELLGSLGDNELSP-ECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSA 853 (1072)
T ss_pred cccccccccccccccccccceehHhhhcccccccCCH-HHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccH
Confidence 8533 379999998776666666544 456666777765 55 58999999999999887
Q ss_pred hH
Q psy9773 160 EI 161 (252)
Q Consensus 160 ~~ 161 (252)
.+
T Consensus 854 KL 855 (1072)
T PTZ00357 854 TF 855 (1072)
T ss_pred HH
Confidence 64
No 229
>KOG2915|consensus
Probab=97.35 E-value=0.00093 Score=59.14 Aligned_cols=92 Identities=24% Similarity=0.278 Sum_probs=67.8
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------------------CceEEEEccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------------------LILEVIQNKI 100 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------------------~~i~~~~~d~ 100 (252)
|.....+.+|.+||+-|+|+| .+ |..+++ .++ .+++..|+ .++++..-|+
T Consensus 97 I~~~L~i~PGsvV~EsGTGSG--Sl--------ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV 166 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSG--SL--------SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV 166 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcc--hH--------HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec
Confidence 333457899999999999999 66 666665 222 58999998 7889999999
Q ss_pred cccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCe-EEEeeccc
Q psy9773 101 ENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEG-VMYPYKCI 150 (252)
Q Consensus 101 ~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG-~lv~~~~~ 150 (252)
-...+. ..+|.|+... +.+..++..+.+.|+.+| +|+.-++.
T Consensus 167 c~~GF~~ks~~aDaVFLDl--------PaPw~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 167 CGSGFLIKSLKADAVFLDL--------PAPWEAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred ccCCccccccccceEEEcC--------CChhhhhhhhHHHhhhcCceEEeccHH
Confidence 877665 6799997744 345556677777888765 66655554
No 230
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.34 E-value=0.00019 Score=54.22 Aligned_cols=85 Identities=22% Similarity=0.131 Sum_probs=40.0
Q ss_pred EEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC--CC-CceeEEE
Q psy9773 54 LDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE--LP-EKVDIIV 113 (252)
Q Consensus 54 LDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~--~~-~~fDlIv 113 (252)
|++|+..|.+++ +++..+...+..+++++|. .++.+++++....- .+ +++|+|+
T Consensus 1 lEiG~~~G~st~------~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTL------WLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred Cccccccccccc------cccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 689988886554 1122222222236889988 46788888876552 22 6899998
Q ss_pred ecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.... | ........+..+.+.|+|||++++..
T Consensus 75 iDg~-H---~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 75 IDGD-H---SYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp EES-------HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred ECCC-C---CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 8552 2 22456677888899999999999864
No 231
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.29 E-value=0.0014 Score=60.61 Aligned_cols=86 Identities=20% Similarity=0.115 Sum_probs=51.2
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL-- 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~-- 105 (252)
....++ +|||+-||+| ++ ++.++.. +++|+|+++ .++.|+.+++.++..
T Consensus 193 l~~~~~-~vlDlycG~G--~f--------sl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 193 LDLSKG-DVLDLYCGVG--TF--------SLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp CTT-TT-EEEEES-TTT--CC--------HHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred hhcCCC-cEEEEeecCC--HH--------HHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence 334444 8999999999 88 8888876 478999999 678999887654421
Q ss_pred --------------C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 --------------P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 --------------~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
. ..+|+|+.++--.++. ..++..+. ++.=++|+++..
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~-----~~~~~~~~---~~~~ivYvSCnP 312 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLD-----EKVIELIK---KLKRIVYVSCNP 312 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SC-----HHHHHHHH---HSSEEEEEES-H
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch-----HHHHHHHh---cCCeEEEEECCH
Confidence 1 2589999877544431 23333332 335677787754
No 232
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.28 E-value=0.0019 Score=57.64 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=54.8
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEE-----EccccccCCC-C
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVI-----QNKIENVELP-E 107 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~-----~~d~~~~~~~-~ 107 (252)
....+.+|||+|||+|..++ .+...-. ....++++|. ....-. .........+ .
T Consensus 30 p~f~P~~vLD~GsGpGta~w-------Aa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALW-------AAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred cCCCCceEEEecCChHHHHH-------HHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 45677899999999993222 1111111 3457888888 000000 0111110111 3
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..|+|++++++.-+.. .....++..+.+.+.+ .|++..+
T Consensus 102 ~~DLvi~s~~L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEp 140 (274)
T PF09243_consen 102 PDDLVIASYVLNELPS-AARAELVRSLWNKTAP--VLVLVEP 140 (274)
T ss_pred CCcEEEEehhhhcCCc-hHHHHHHHHHHHhccC--cEEEEcC
Confidence 4599999999888877 6677888888776666 5555543
No 233
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.28 E-value=0.0014 Score=55.97 Aligned_cols=110 Identities=12% Similarity=0.124 Sum_probs=65.4
Q ss_pred HhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC---------------
Q psy9773 27 MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY--------------- 90 (252)
Q Consensus 27 ~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~--------------- 90 (252)
.++.+.....+...|-+ .+++.|+++|.-.|++.+ +++-.+... +..+|+|+|+
T Consensus 14 i~q~P~Dm~~~qeli~~----~kPd~IIE~Gi~~GGSli------~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~ 83 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWE----LKPDLIIETGIAHGGSLI------FWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM 83 (206)
T ss_dssp ESS-HHHHHHHHHHHHH----H--SEEEEE--TTSHHHH------HHHHHHHHTT---EEEEEES-GTT--S-GGGG---
T ss_pred hhcCHHHHHHHHHHHHH----hCCCeEEEEecCCCchHH------HHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc
Confidence 45556667777777754 556899999999998776 344444444 3368999999
Q ss_pred -CceEEEEccccccCC-------C--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 -LILEVIQNKIENVEL-------P--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 -~~i~~~~~d~~~~~~-------~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++|+++++|..+... . ....+|+... .|.- ......|.....++++|+++++....
T Consensus 84 ~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs-~H~~---~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQVRELASPPHPVLVILDS-SHTH---EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206)
T ss_dssp -TTEEEEES-SSSTHHHHTSGSS----SSEEEEESS--------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred cCceEEEECCCCCHHHHHHHHHhhccCCceEEEECC-CccH---HHHHHHHHHhCccCCCCCEEEEEecc
Confidence 699999999976621 1 2344555532 2222 34566777789999999999987753
No 234
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.002 Score=59.71 Aligned_cols=107 Identities=16% Similarity=0.068 Sum_probs=76.2
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-------------------------------
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP------------------------------- 82 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~------------------------------- 82 (252)
...+..+|...+.-.++..++|.=||+| ++ .+.++..+.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSG--Ti--------~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~ 245 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSG--TI--------LIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE 245 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCcc--HH--------HHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence 5667778888788888899999999999 87 455444431
Q ss_pred ---------CcEEEeeC------------------CceEEEEccccccCCC-CceeEEEecccc-cccCChhh----HHH
Q psy9773 83 ---------LDHYAPQY------------------LILEVIQNKIENVELP-EKVDIIVSEWMG-FYLLHESM----IDS 129 (252)
Q Consensus 83 ---------~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~fDlIv~~~~~-~~l~~~~~----~~~ 129 (252)
..++|+|+ ..|.|.++|+..+..+ ..+|+|||++-. .-+..... ...
T Consensus 246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~ 325 (381)
T COG0116 246 ERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYRE 325 (381)
T ss_pred HHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHH
Confidence 13779999 6799999999999887 899999997642 22222222 223
Q ss_pred HHHHHhccccCCeEEEeeccc
Q psy9773 130 VIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 130 ~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+...+.+.++.-+++++++..
T Consensus 326 fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 326 FGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHHHHhcCCceEEEEccH
Confidence 444556777777788877653
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.23 E-value=0.0027 Score=57.96 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=56.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHH--Hhhc-CCCcEEEeeC-----------------CceEE--EEcccccc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSF--CTKV-HPLDHYAPQY-----------------LILEV--IQNKIENV 103 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~--~a~~-g~~~v~gvD~-----------------~~i~~--~~~d~~~~ 103 (252)
.+.++.+|+|+|||+|+=+. .++ +... ....++++|+ +.+.+ +++|..+.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~--------~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVG--------ILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred hcCCCCEEEEECCCchHHHH--------HHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34667799999999995322 111 1111 1245888888 33444 67777543
Q ss_pred ----CCC---CceeEEEecc-cccccCChhhHHHHHHHHhc-cccCCeEEEeec
Q psy9773 104 ----ELP---EKVDIIVSEW-MGFYLLHESMIDSVIFARDK-FLKPEGVMYPYK 148 (252)
Q Consensus 104 ----~~~---~~fDlIv~~~-~~~~l~~~~~~~~~l~~l~~-~LkpgG~lv~~~ 148 (252)
+.+ ....+++... +... ........+|+.+++ .|+|||.|++..
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGN-f~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGN-FSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HhhcccccccCCccEEEEeCccccC-CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 211 3356665522 1122 233467789999999 999999998854
No 236
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.18 E-value=0.00033 Score=57.79 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=38.3
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC---C-c
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP---E-K 108 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~---~-~ 108 (252)
..|+|+.||.|++++ .+++. ..+|+|+|+ ++|.++++|+.++... . .
T Consensus 1 ~~vlD~fcG~GGNtI----------qFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~ 69 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTI----------QFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKI 69 (163)
T ss_dssp SEEEETT-TTSHHHH----------HHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-----
T ss_pred CEEEEeccCcCHHHH----------HHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcccccc
Confidence 369999999997765 55555 468999999 6899999999887433 2 2
Q ss_pred eeEEEeccc
Q psy9773 109 VDIIVSEWM 117 (252)
Q Consensus 109 fDlIv~~~~ 117 (252)
+|+|++++-
T Consensus 70 ~D~vFlSPP 78 (163)
T PF09445_consen 70 FDVVFLSPP 78 (163)
T ss_dssp -SEEEE---
T ss_pred ccEEEECCC
Confidence 899998553
No 237
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.16 E-value=0.0012 Score=64.00 Aligned_cols=27 Identities=4% Similarity=-0.186 Sum_probs=20.7
Q ss_pred HHHhccccCCeEEEeeccccccCCCCC
Q psy9773 132 FARDKFLKPEGVMYPYKCILHSAPSYS 158 (252)
Q Consensus 132 ~~l~~~LkpgG~lv~~~~~~~~~~~~~ 158 (252)
..+.++|+|||++.+..+..+......
T Consensus 180 ~~~~~lL~~~G~~~~I~P~s~l~~~~~ 206 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPASWLGDKTG 206 (524)
T ss_pred HHHHHhcCCCCEEEEEEChHHhcCccH
Confidence 456899999999999888766555444
No 238
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.08 E-value=0.0057 Score=56.60 Aligned_cols=101 Identities=21% Similarity=0.174 Sum_probs=65.9
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVELP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~~ 106 (252)
....+|.+|||++++.|+=+. .+..+..+ ...|+++|. .++.++..|...++..
T Consensus 152 L~p~pge~VlD~cAAPGGKTt--------hla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~ 223 (355)
T COG0144 152 LDPKPGERVLDLCAAPGGKTT--------HLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223 (355)
T ss_pred cCCCCcCEEEEECCCCCCHHH--------HHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccc
Confidence 467889999999999996333 12222221 134799999 4567778887655322
Q ss_pred ----CceeEEEecccc---cccCChh----------------hHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 107 ----EKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 107 ----~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
.+||.|++..-. ..+...+ --..+|..+.++|||||+|+-+++++..
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 359999982211 1111001 1346788889999999999999987543
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.07 E-value=0.0015 Score=57.75 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=50.3
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL 105 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~ 105 (252)
|.......++..|||+|+|+| .+ +..+...+ ++++++++ .++.++.+|+..+..
T Consensus 22 Iv~~~~~~~~~~VlEiGpG~G--~l--------T~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 22 IVDALDLSEGDTVLEIGPGPG--AL--------TRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHTCGTTSEEEEESSTTS--CC--------HHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCG
T ss_pred HHHhcCCCCCCEEEEeCCCCc--cc--------hhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhcccc
Confidence 333334568899999999999 77 77888876 78999999 689999999999876
Q ss_pred CC----ceeEEEecc
Q psy9773 106 PE----KVDIIVSEW 116 (252)
Q Consensus 106 ~~----~fDlIv~~~ 116 (252)
+. ....|+++.
T Consensus 91 ~~~~~~~~~~vv~Nl 105 (262)
T PF00398_consen 91 YDLLKNQPLLVVGNL 105 (262)
T ss_dssp GGHCSSSEEEEEEEE
T ss_pred HHhhcCCceEEEEEe
Confidence 63 566777643
No 240
>KOG3987|consensus
Probab=96.91 E-value=0.00025 Score=60.50 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=61.2
Q ss_pred HHHHHHHHHhCCCC--CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEcccc
Q psy9773 34 NEAYRAAICDNPNI--FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIE 101 (252)
Q Consensus 34 ~~~~~~~l~~~~~~--~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~ 101 (252)
...+++.+....+. ..+.++||+|+|.| -+ +..++.. ...|+|.+. .+.+++ ...
T Consensus 95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdG--ei--------t~~m~p~-feevyATElS~tMr~rL~kk~ynVl--~~~ 161 (288)
T KOG3987|consen 95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDG--EI--------TLRMAPT-FEEVYATELSWTMRDRLKKKNYNVL--TEI 161 (288)
T ss_pred HHHHHHHHhcCCCccCCCCeeEEeccCCCc--ch--------hhhhcch-HHHHHHHHhhHHHHHHHhhcCCcee--eeh
Confidence 34566666543222 23479999999999 44 4555443 245667666 233332 112
Q ss_pred ccC-CCCceeEEEecccccccCChhhHHHHHHHHhccccC-CeEEEeec
Q psy9773 102 NVE-LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKP-EGVMYPYK 148 (252)
Q Consensus 102 ~~~-~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkp-gG~lv~~~ 148 (252)
++. ..-+||+|.|..+ +..-.++-.+|..++.+|+| .|++++.-
T Consensus 162 ew~~t~~k~dli~clNl---LDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 162 EWLQTDVKLDLILCLNL---LDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred hhhhcCceeehHHHHHH---HHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 221 1136999988554 33334788999999999999 89888653
No 241
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.91 E-value=0.0076 Score=53.50 Aligned_cols=91 Identities=11% Similarity=0.155 Sum_probs=54.3
Q ss_pred CEEEEEcCCcCchhhhhccCccc-hHHHhh-cCCCcEEEeeC---------------Cc--eEEEEccccccC-------
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDH-HSFCTK-VHPLDHYAPQY---------------LI--LEVIQNKIENVE------- 104 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~-s~~~a~-~g~~~v~gvD~---------------~~--i~~~~~d~~~~~------- 104 (252)
...||||||-= +. .+ ...+.. ....+|+-+|. .+ ..++++|+++..
T Consensus 70 rQFLDlGsGlP--T~------~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 70 RQFLDLGSGLP--TA------GNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp -EEEEET--S----S------S-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred ceEEEcccCCC--CC------CCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHH
Confidence 67999999943 11 11 222333 33368999998 34 789999997652
Q ss_pred ------CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 ------LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ------~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+..++-++++ .++|++....++..++..++..|.||.+|++++.+
T Consensus 142 ~~~~lD~~rPVavll~-~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLV-AVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp HHCC--TTS--EEEEC-T-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred HHhcCCCCCCeeeeee-eeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 1134445444 66788888789999999999999999999999875
No 242
>KOG3201|consensus
Probab=96.90 E-value=0.0003 Score=57.76 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--------------------Cc
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--------------------LI 92 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--------------------~~ 92 (252)
..++.-.+++......|++||++|.|--+ +- +++.+. .....|.-.|. .+
T Consensus 14 eeala~~~l~~~n~~rg~~ilelgggft~-la--------glmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts 84 (201)
T KOG3201|consen 14 EEALAWTILRDPNKIRGRRILELGGGFTG-LA--------GLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTS 84 (201)
T ss_pred HHHHHHHHHhchhHHhHHHHHHhcCchhh-hh--------hhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccce
Confidence 44555566666667788999999998431 21 233333 33456777777 11
Q ss_pred eEEEEccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 93 LEVIQNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 93 i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.++..+....... .+||+|+|....++- .....++..+.++|+|.|.-++..|.
T Consensus 85 c~vlrw~~~~aqsq~eq~tFDiIlaADClFfd---E~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 85 CCVLRWLIWGAQSQQEQHTFDIILAADCLFFD---EHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ehhhHHHHhhhHHHHhhCcccEEEeccchhHH---HHHHHHHHHHHHHhCcccceeEecCc
Confidence 21222222222211 589999996664444 45567788889999999998887765
No 243
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.012 Score=50.22 Aligned_cols=102 Identities=23% Similarity=0.180 Sum_probs=69.4
Q ss_pred HHHHHHHHhC---CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEE
Q psy9773 35 EAYRAAICDN---PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVI 96 (252)
Q Consensus 35 ~~~~~~l~~~---~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~ 96 (252)
..+..+++.- .++.+|.+||=||+.+| +- .|....-.+...++|+++ .|+--+
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasG--TT-------vSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PI 129 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASG--TT-------VSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPI 129 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCC--Cc-------HhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceee
Confidence 3445555442 46789999999999999 33 033333344457999998 667777
Q ss_pred EccccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 97 QNKIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 97 ~~d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+|+.....- +.+|+|+..-+ ......-+..++...|++||.+++....
T Consensus 130 L~DA~~P~~Y~~~Ve~VDviy~DVA-----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKA 182 (231)
T COG1889 130 LEDARKPEKYRHLVEKVDVIYQDVA-----QPNQAEILADNAEFFLKKGGYVVIAIKA 182 (231)
T ss_pred ecccCCcHHhhhhcccccEEEEecC-----CchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence 7887665322 67999988443 2234556677788999999988776654
No 244
>KOG2187|consensus
Probab=96.85 E-value=0.0068 Score=57.96 Aligned_cols=101 Identities=18% Similarity=0.123 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEE
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVI 96 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~ 96 (252)
...+.+.+........+..+||+.|||| ++ ++.+++ ++++|+||++ .+.+|+
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG--~i--------glala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi 436 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTG--TI--------GLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNATFI 436 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCC--ce--------ehhhhc-cccceeeeecChhhcchhhhcchhcCccceeee
Confidence 3445555666667888899999999999 77 555554 4688999998 788999
Q ss_pred EccccccCCC------Ccee-EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 97 QNKIENVELP------EKVD-IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 97 ~~d~~~~~~~------~~fD-lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
++.+.++-.. .+-+ ++|.++.-. .--..++..+.+.-++-=++|++++.
T Consensus 437 ~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~-----Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 437 VGQAEDLFPSLLTPCCDSETLVAIIDPPRK-----GLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred ecchhhccchhcccCCCCCceEEEECCCcc-----cccHHHHHHHHhccCccceEEEEcCH
Confidence 9966665322 2345 344433211 22335566665555577777777654
No 245
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.82 E-value=0.0037 Score=59.62 Aligned_cols=45 Identities=13% Similarity=0.328 Sum_probs=38.7
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|.+||+|+++.++....+.-++..+|-++-|+|+|||.+++....
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~ 469 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV 469 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence 489999999887766666678999999999999999999997643
No 246
>PRK10742 putative methyltransferase; Provisional
Probab=96.81 E-value=0.0037 Score=54.90 Aligned_cols=71 Identities=17% Similarity=0.033 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCCCCCCC--EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------------
Q psy9773 34 NEAYRAAICDNPNIFAGK--TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------- 90 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~--~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------- 90 (252)
...+.+++ .+.+|. +|||+-+|+| .. ++.++.+|+. |++++.
T Consensus 75 ~~~l~kAv----glk~g~~p~VLD~TAGlG--~D--------a~~las~G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~ 139 (250)
T PRK10742 75 GEAVAKAV----GIKGDYLPDVVDATAGLG--RD--------AFVLASVGCR-VRMLERNPVVAALLDDGLARGYADAEI 139 (250)
T ss_pred ccHHHHHh----CCCCCCCCEEEECCCCcc--HH--------HHHHHHcCCE-EEEEECCHHHHHHHHHHHHHhhhcccc
Confidence 34455554 456666 9999999999 77 7888888876 999998
Q ss_pred -----CceEEEEccccccCC--CCceeEEEeccccc
Q psy9773 91 -----LILEVIQNKIENVEL--PEKVDIIVSEWMGF 119 (252)
Q Consensus 91 -----~~i~~~~~d~~~~~~--~~~fDlIv~~~~~~ 119 (252)
.+++++++|...+.. +.+||+|++.+|..
T Consensus 140 ~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 140 GGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred chhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCC
Confidence 136677777766632 25799999988743
No 247
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.73 E-value=0.0099 Score=50.86 Aligned_cols=82 Identities=27% Similarity=0.172 Sum_probs=55.3
Q ss_pred EEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------------CceEEEEccccccCCC-CceeEE
Q psy9773 53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------------LILEVIQNKIENVELP-EKVDII 112 (252)
Q Consensus 53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------------~~i~~~~~d~~~~~~~-~~fDlI 112 (252)
|.|+||-.| .+ +..+.+.|. .+++++|+ .++.+..+|-...-.+ ...|+|
T Consensus 1 vaDIGtDHg--yL--------pi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~i 70 (205)
T PF04816_consen 1 VADIGTDHG--YL--------PIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTI 70 (205)
T ss_dssp EEEET-STT--HH--------HHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EE
T ss_pred Cceeccchh--HH--------HHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEE
Confidence 689999999 77 778877765 57999999 6799999996554333 348888
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+...|+.. -+..+|.+....++....|++.-.
T Consensus 71 vIAGMGG~-----lI~~ILe~~~~~~~~~~~lILqP~ 102 (205)
T PF04816_consen 71 VIAGMGGE-----LIIEILEAGPEKLSSAKRLILQPN 102 (205)
T ss_dssp EEEEE-HH-----HHHHHHHHTGGGGTT--EEEEEES
T ss_pred EEecCCHH-----HHHHHHHhhHHHhccCCeEEEeCC
Confidence 88776544 477888888777777667776543
No 248
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0031 Score=57.84 Aligned_cols=43 Identities=14% Similarity=-0.069 Sum_probs=28.0
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..|++++...-+-.......+...+..+..++.|||.|++...
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5577766522111112333566688899999999999998764
No 249
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.67 E-value=0.015 Score=46.41 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=41.5
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-----cCCCcEEEeeC--------------------CceEEEEccc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-----VHPLDHYAPQY--------------------LILEVIQNKI 100 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-----~g~~~v~gvD~--------------------~~i~~~~~d~ 100 (252)
...+..+|+|+|||.| .+ +..++. ....+|+++|. .++.+..+++
T Consensus 22 ~~~~~~~vvD~GsG~G--yL--------s~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKG--YL--------SRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI 91 (141)
T ss_pred ccCCCCEEEEeCCChh--HH--------HHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence 3467789999999999 77 667666 43468999998 2344555554
Q ss_pred cccCCCCceeEEEecc
Q psy9773 101 ENVELPEKVDIIVSEW 116 (252)
Q Consensus 101 ~~~~~~~~fDlIv~~~ 116 (252)
.........++++.-+
T Consensus 92 ~~~~~~~~~~~~vgLH 107 (141)
T PF13679_consen 92 ADESSSDPPDILVGLH 107 (141)
T ss_pred hhhcccCCCeEEEEee
Confidence 4443345678887733
No 250
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.63 E-value=0.007 Score=55.56 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEcCCcCchhh--hhccCccch-HHHhhcC-----CCcEEEeeC---------------------Cce---
Q psy9773 46 NIFAGKTVLDVGTGTGKSIL--LQGHGVDHH-SFCTKVH-----PLDHYAPQY---------------------LIL--- 93 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~l--l~~~~v~~s-~~~a~~g-----~~~v~gvD~---------------------~~i--- 93 (252)
.....-+|+|+||.+|.+++ ++.+ ++.. ......+ .-.|+--|. .+-
T Consensus 13 ~~~~~~~iaD~GcS~G~Nsl~~~~~i-i~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~ 91 (334)
T PF03492_consen 13 NNPKPFRIADLGCSSGPNSLLAVSNI-IDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFV 91 (334)
T ss_dssp TTTTEEEEEEES--SSHHHHHHHHHH-HHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEE
T ss_pred CCCCceEEEecCCCCCccHHHHHHHH-HHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEE
Confidence 34455799999999998877 1111 0000 0000000 125666677 122
Q ss_pred EEEEccccccCCC-CceeEEEecccccccCCh------------------------------------hhHHHHHHHHhc
Q psy9773 94 EVIQNKIENVELP-EKVDIIVSEWMGFYLLHE------------------------------------SMIDSVIFARDK 136 (252)
Q Consensus 94 ~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~------------------------------------~~~~~~l~~l~~ 136 (252)
.-+.+.+..--+| ++.|++++.+.+|++... .|+..+|+...+
T Consensus 92 ~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ 171 (334)
T PF03492_consen 92 SGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE 171 (334)
T ss_dssp EEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2234555544555 899999998888777532 156777888889
Q ss_pred cccCCeEEEeeccc
Q psy9773 137 FLKPEGVMYPYKCI 150 (252)
Q Consensus 137 ~LkpgG~lv~~~~~ 150 (252)
=|+|||+|++....
T Consensus 172 ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 172 ELVPGGRMVLTFLG 185 (334)
T ss_dssp HEEEEEEEEEEEEE
T ss_pred eeccCcEEEEEEee
Confidence 99999999988764
No 251
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.60 E-value=0.0096 Score=54.96 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=72.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------------CceEEEEccccc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------------LILEVIQNKIEN 102 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------------~~i~~~~~d~~~ 102 (252)
+...+||-+|.|.| .- ...+.+.+ ..+++-+|. +|++++..|+.+
T Consensus 288 ~~a~~vLvlGGGDG--LA--------lRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~ 357 (508)
T COG4262 288 RGARSVLVLGGGDG--LA--------LRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQ 357 (508)
T ss_pred cccceEEEEcCCch--HH--------HHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHH
Confidence 34478999999999 54 44555554 467888877 788999999988
Q ss_pred cCCC--CceeEEEecccccccCChh--hHHHHHHHHhccccCCeEEEeeccccccCCCCChhH
Q psy9773 103 VELP--EKVDIIVSEWMGFYLLHES--MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI 161 (252)
Q Consensus 103 ~~~~--~~fDlIv~~~~~~~l~~~~--~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~ 161 (252)
+-.. ..||+||.......-+... --..+-.-+.+.|+++|+++++..+.|..+..+...
T Consensus 358 wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i 420 (508)
T COG4262 358 WLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRI 420 (508)
T ss_pred HHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeee
Confidence 8544 6899999844211111111 223455667899999999999998878777765433
No 252
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.54 E-value=0.033 Score=52.08 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=36.9
Q ss_pred CCC-CceeEEEecccccccCChh-----------------------------------hHHHHHHHHhccccCCeEEEee
Q psy9773 104 ELP-EKVDIIVSEWMGFYLLHES-----------------------------------MIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 104 ~~~-~~fDlIv~~~~~~~l~~~~-----------------------------------~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
-+| ++.+++++++.+|++...+ |+..+|+...+-|.|||++++.
T Consensus 157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~ 236 (386)
T PLN02668 157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV 236 (386)
T ss_pred ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence 344 8899999988888876311 4667777888899999999998
Q ss_pred cccc
Q psy9773 148 KCIL 151 (252)
Q Consensus 148 ~~~~ 151 (252)
....
T Consensus 237 ~~Gr 240 (386)
T PLN02668 237 CLGR 240 (386)
T ss_pred EecC
Confidence 7643
No 253
>KOG2352|consensus
Probab=96.50 E-value=0.013 Score=55.85 Aligned_cols=93 Identities=14% Similarity=0.197 Sum_probs=71.5
Q ss_pred CCCCC-EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-Cc
Q psy9773 47 IFAGK-TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP-EK 108 (252)
Q Consensus 47 ~~~~~-~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~-~~ 108 (252)
..+-. ++|-+|||.- .+ +..+-..|...++.+|+ ..+.+...|+..+.++ .+
T Consensus 45 ~~p~~~~~l~lGCGNS--~l--------~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedES 114 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNS--EL--------SEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDES 114 (482)
T ss_pred hchhhceeEeecCCCC--HH--------HHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcc
Confidence 34444 9999999999 66 66777778888999999 4577889999999888 89
Q ss_pred eeEEEecccccccCChh-------hHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLHES-------MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~-------~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||+|+.-..+..+.... .....+..+.++|+|||+++....
T Consensus 115 FdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 115 FDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred eeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999966655543222 234567788999999999876554
No 254
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=96.50 E-value=0.005 Score=55.55 Aligned_cols=61 Identities=18% Similarity=0.080 Sum_probs=43.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC---------------CceEEEEccccccCC--C
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY---------------LILEVIQNKIENVEL--P 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~---------------~~i~~~~~d~~~~~~--~ 106 (252)
...++..+||++||.|+.+ ..+++.. ..+|+|+|. .++.++++|+.++.. +
T Consensus 16 ~~~pg~~vlD~TlG~GGhS----------~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 16 AIKPDGIYVDGTFGGGGHS----------RAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCCCCCEEEEeCcCChHHH----------HHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 4567889999999999554 4545542 257999999 268888888887632 1
Q ss_pred C---ceeEEEecc
Q psy9773 107 E---KVDIIVSEW 116 (252)
Q Consensus 107 ~---~fDlIv~~~ 116 (252)
. ++|.|+++.
T Consensus 86 ~~~~~vDgIl~DL 98 (296)
T PRK00050 86 EGLGKVDGILLDL 98 (296)
T ss_pred cCCCccCEEEECC
Confidence 2 789888844
No 255
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.49 E-value=0.011 Score=53.05 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC--C
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL--P 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~--~ 106 (252)
...++.+|||+++|.|+=+. .+.....+...+++.|+ .++.++..|...... .
T Consensus 82 ~~~~~~~VLD~CAapGgKt~--------~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 82 DPQPGERVLDMCAAPGGKTT--------HLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP 153 (283)
T ss_dssp TTTTTSEEEESSCTTSHHHH--------HHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH
T ss_pred cccccccccccccCCCCcee--------eeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc
Confidence 46788999999999995433 12222122358999999 677777778877732 2
Q ss_pred -CceeEEEecccc---cccCChh----------------hHHHHHHHHhccc----cCCeEEEeecccccc
Q psy9773 107 -EKVDIIVSEWMG---FYLLHES----------------MIDSVIFARDKFL----KPEGVMYPYKCILHS 153 (252)
Q Consensus 107 -~~fDlIv~~~~~---~~l~~~~----------------~~~~~l~~l~~~L----kpgG~lv~~~~~~~~ 153 (252)
..||.|++..-. ..+...+ --..+|..+.+++ +|||+++-+++++..
T Consensus 154 ~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~ 224 (283)
T PF01189_consen 154 ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP 224 (283)
T ss_dssp TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence 459999982211 1111111 1346788889999 999999999887443
No 256
>KOG2798|consensus
Probab=96.41 E-value=0.015 Score=52.67 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=34.5
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHS 153 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~ 153 (252)
+.||+|+.. +++....++...|..+.++|+|||+.+=..|-.|.
T Consensus 258 ~~~d~VvTc---fFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH 301 (369)
T KOG2798|consen 258 GSYDVVVTC---FFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH 301 (369)
T ss_pred CccceEEEE---EEeechHHHHHHHHHHHHhccCCcEEEeccceeee
Confidence 579999874 44666678889999999999999998866664443
No 257
>KOG2920|consensus
Probab=96.40 E-value=0.0033 Score=55.93 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=27.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.-...+++|||+|||+| +. .+.+...++..+...|.
T Consensus 112 ~~~~~~k~vLELgCg~~--Lp--------~i~~~~~~~~~~~fqD~ 147 (282)
T KOG2920|consen 112 QMSFSGKRVLELGCGAA--LP--------GIFAFVKGAVSVHFQDF 147 (282)
T ss_pred heEecCceeEecCCccc--cc--------chhhhhhccceeeeEec
Confidence 45678999999999999 66 66666666556666666
No 258
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.36 E-value=0.008 Score=50.94 Aligned_cols=96 Identities=26% Similarity=0.282 Sum_probs=62.6
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-----------------------CceEEEEcc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-----------------------LILEVIQNK 99 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-----------------------~~i~~~~~d 99 (252)
..+++|.+|+|+-.|.| .+ +..++. .|+ ..|+++-. .+...+-..
T Consensus 44 aGlkpg~tVid~~PGgG--y~--------TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~ 113 (238)
T COG4798 44 AGLKPGATVIDLIPGGG--YF--------TRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP 113 (238)
T ss_pred eccCCCCEEEEEecCCc--cH--------hhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc
Confidence 56789999999999999 33 444433 333 25666543 334444444
Q ss_pred ccccCCCCceeEEEeccccccc----CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 100 IENVELPEKVDIIVSEWMGFYL----LHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 100 ~~~~~~~~~fDlIv~~~~~~~l----~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
...+..+...|+++.....+.+ .+......+...+.+.|||||++++....
T Consensus 114 ~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 114 LVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred ccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 4555544667777763332222 24446788889999999999999987643
No 259
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.28 E-value=0.035 Score=49.63 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC-------------------CceEEEEccccccCCC-
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY-------------------LILEVIQNKIENVELP- 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~-------------------~~i~~~~~d~~~~~~~- 106 (252)
.+.+|+=||||.= .+ .++.+++ .+. ..+.++|+ .++.|+.+|.......
T Consensus 120 ~p~rVaFIGSGPL--Pl-------T~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl 190 (276)
T PF03059_consen 120 PPSRVAFIGSGPL--PL-------TSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL 190 (276)
T ss_dssp ---EEEEE---SS---H-------HHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG-
T ss_pred ccceEEEEcCCCc--ch-------HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc
Confidence 4469999999986 33 0233443 332 35889999 6789999999887655
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..||+|+...... .....-..+|..+.+.++||+++++-...
T Consensus 191 ~~~DvV~lAalVg--~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 191 KEYDVVFLAALVG--MDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp ---SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred ccCCEEEEhhhcc--cccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 7899998733211 12236789999999999999999987543
No 260
>KOG2793|consensus
Probab=95.98 E-value=0.023 Score=49.95 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------CceEEEEccccccCCC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------------LILEVIQNKIENVELP 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------------~~i~~~~~d~~~~~~~ 106 (252)
...+||++|+|+| .. .+.++..+...|...|. ..+.+...+.......
T Consensus 86 ~~~~vlELGsGtg--lv--------G~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~ 155 (248)
T KOG2793|consen 86 KYINVLELGSGTG--LV--------GILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDV 155 (248)
T ss_pred cceeEEEecCCcc--HH--------HHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccH
Confidence 4567999999999 66 66666644456777777 1333333333333211
Q ss_pred ----Cc-eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 ----EK-VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ----~~-fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.. +|+|+++.+.+. +..+..++.-+..+|..+|.+++...
T Consensus 156 ~~~~~~~~DlilasDvvy~---~~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 156 SFRLPNPFDLILASDVVYE---EESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred hhccCCcccEEEEeeeeec---CCcchhHHHHHHHHHhcCCeEEEEEe
Confidence 34 899999776443 35566667777778888885555543
No 261
>KOG1596|consensus
Probab=95.94 E-value=0.037 Score=48.52 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC---------------CceEEEEccccccCCC--
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY---------------LILEVIQNKIENVELP-- 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~---------------~~i~~~~~d~~~~~~~-- 106 (252)
.++.+|.+||=||+++|.+. |....-.|+ .-||+++. .||--+.-|++....-
T Consensus 152 ihikpGsKVLYLGAasGttV---------SHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRm 222 (317)
T KOG1596|consen 152 IHIKPGSKVLYLGAASGTTV---------SHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRM 222 (317)
T ss_pred eeecCCceEEEeeccCCcee---------ehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheee
Confidence 57889999999999999322 222222333 35888888 4555566676654321
Q ss_pred --CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCC
Q psy9773 107 --EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS 156 (252)
Q Consensus 107 --~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~ 156 (252)
+-.|+|++... ......-+..++.-.|++||-|+++.........
T Consensus 223 lVgmVDvIFaDva-----qpdq~RivaLNA~~FLk~gGhfvisikancidst 269 (317)
T KOG1596|consen 223 LVGMVDVIFADVA-----QPDQARIVALNAQYFLKNGGHFVISIKANCIDST 269 (317)
T ss_pred eeeeEEEEeccCC-----CchhhhhhhhhhhhhhccCCeEEEEEeccccccc
Confidence 56899987442 2223344445567899999999998765333333
No 262
>KOG2730|consensus
Probab=95.77 E-value=0.0034 Score=54.06 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC----
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP---- 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~---- 106 (252)
...+|+|..||-|+++. .+ +..++ .|++||+ ++|+|+++|+.++-..
T Consensus 94 ~~~~iidaf~g~gGnti---------qf-a~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~ 162 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTI---------QF-ALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD 162 (263)
T ss_pred CcchhhhhhhcCCchHH---------HH-HHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh
Confidence 55789999999998776 22 33333 4777777 6999999999877332
Q ss_pred -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773 107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
..+|+++.++-.. ...-...-+..+...+.|.|.-+
T Consensus 163 K~~~~~vf~sppwg---gp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 163 KIKYDCVFLSPPWG---GPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred hheeeeeecCCCCC---CcchhhhhhhhhhhhcchhHHHH
Confidence 3466776644321 22334455556666666664433
No 263
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.0042 Score=50.78 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=44.1
Q ss_pred eEEEEccccccCCC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 93 LEVIQNKIENVELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 93 i~~~~~d~~~~~~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
+.+++-......+. ++.|+|.+..++.|+... ....+++.+++.|||||+|-++.+..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~-Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYD-EGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHH-HHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 44444333444454 899999998888777554 57789999999999999999998753
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.47 E-value=0.06 Score=47.33 Aligned_cols=66 Identities=17% Similarity=0.009 Sum_probs=42.4
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC----------------CceEEEEccccccCCCCc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY----------------LILEVIQNKIENVELPEK 108 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~----------------~~i~~~~~d~~~~~~~~~ 108 (252)
.+.+..+|+|||||.- .+ ++...... ...++|+|+ .+..+...|+...+.+..
T Consensus 102 ~~~~p~sVlDigCGlN--Pl--------alp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~ 171 (251)
T PF07091_consen 102 RIPPPDSVLDIGCGLN--PL--------ALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEP 171 (251)
T ss_dssp CS---SEEEEET-TTC--HH--------HHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSE
T ss_pred cCCCCchhhhhhccCC--ce--------ehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCC
Confidence 4566899999999998 66 55544432 258999999 456677778887766688
Q ss_pred eeEEEeccccccc
Q psy9773 109 VDIIVSEWMGFYL 121 (252)
Q Consensus 109 fDlIv~~~~~~~l 121 (252)
.|+.+..=+++.+
T Consensus 172 ~DlaLllK~lp~l 184 (251)
T PF07091_consen 172 ADLALLLKTLPCL 184 (251)
T ss_dssp ESEEEEET-HHHH
T ss_pred cchhhHHHHHHHH
Confidence 9999875444444
No 265
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=95.43 E-value=0.0074 Score=46.41 Aligned_cols=42 Identities=12% Similarity=0.183 Sum_probs=30.9
Q ss_pred ceeEEEecccccccC---ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGFYLL---HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~---~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.||+|+|..+.-+++ .+.-+..+|.++.++|+|||+|++.--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999966654332 344688999999999999999998753
No 266
>KOG1099|consensus
Probab=95.40 E-value=0.03 Score=48.68 Aligned_cols=93 Identities=20% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCCC-CEEEEEcCCcCchhhhhccCccchHHHhhc--------CC--CcEEEeeC------CceEEEEccccccCC---
Q psy9773 46 NIFAG-KTVLDVGTGTGKSILLQGHGVDHHSFCTKV--------HP--LDHYAPQY------LILEVIQNKIENVEL--- 105 (252)
Q Consensus 46 ~~~~~-~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--------g~--~~v~gvD~------~~i~~~~~d~~~~~~--- 105 (252)
++..| .|+.||.+..| .+ +..+.+. +. +.+++||+ ..+.-+++|++....
T Consensus 37 ~i~~gv~rvVDLCAAPG--SW--------SQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~ 106 (294)
T KOG1099|consen 37 QIFEGVKRVVDLCAAPG--SW--------SQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEA 106 (294)
T ss_pred hHHhhhhHHhhhhcCCC--cH--------HHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHH
Confidence 34455 68999999999 66 6655442 11 23999999 667788999988743
Q ss_pred -----C-CceeEEEecccc--cccCChh------hHHHHHHHHhccccCCeEEEeec
Q psy9773 106 -----P-EKVDIIVSEWMG--FYLLHES------MIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 106 -----~-~~fDlIv~~~~~--~~l~~~~------~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
. .+.|+|+|..+. ..++... -+...|.-...+|+|||.|+--.
T Consensus 107 Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 107 IIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 2 489999995543 1121111 23445555678999999998543
No 267
>KOG3115|consensus
Probab=95.35 E-value=0.028 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=16.1
Q ss_pred HHHHHHHhccccCCeEEEeec
Q psy9773 128 DSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 128 ~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..++.+..=+|++||.++..+
T Consensus 163 ~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 163 STLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hhHHHHHHhhhhcCceEEEEe
Confidence 356666778899999998765
No 268
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.26 E-value=0.26 Score=43.15 Aligned_cols=102 Identities=17% Similarity=0.096 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------------CceEEE
Q psy9773 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------------LILEVI 96 (252)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------------~~i~~~ 96 (252)
+...+..+........|++||-||=..- . |+.++. ..+++|+.+|+ -+|+.+
T Consensus 29 T~~~Ra~~~~~~gdL~gk~il~lGDDDL---t--------SlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~ 97 (243)
T PF01861_consen 29 TTLRRAALMAERGDLEGKRILFLGDDDL---T--------SLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAV 97 (243)
T ss_dssp HHHHHHHHHHHTT-STT-EEEEES-TT----H--------HHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE
T ss_pred HHHHHHHHHHhcCcccCCEEEEEcCCcH---H--------HHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEE
Confidence 3334444444467788999999996664 2 333333 33578999999 458889
Q ss_pred EccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhccccCCe-EEEeeccc
Q psy9773 97 QNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEG-VMYPYKCI 150 (252)
Q Consensus 97 ~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG-~lv~~~~~ 150 (252)
..|++.--++ ++||++++.+. . ...-+.-++.+....|+..| ..++....
T Consensus 98 ~~DlR~~LP~~~~~~fD~f~TDPP-y---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 98 HYDLRDPLPEELRGKFDVFFTDPP-Y---TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp ---TTS---TTTSS-BSEEEE----S---SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred EecccccCCHHHhcCCCEEEeCCC-C---CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 9999876433 89999999774 2 22567788899889998644 66665443
No 269
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=95.00 E-value=0.037 Score=43.54 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=23.4
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY 90 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~ 90 (252)
++||+|||.| .+ +..++..++. +++++|+
T Consensus 1 ~vlDiGa~~G--~~--------~~~~~~~~~~~~v~~~E~ 30 (143)
T TIGR01444 1 VVIDVGANIG--DT--------SLYFARKGAEGRVIAFEP 30 (143)
T ss_pred CEEEccCCcc--HH--------HHHHHHhCCCCEEEEEec
Confidence 4899999999 66 6677766553 7999999
No 270
>KOG2671|consensus
Probab=94.92 E-value=0.04 Score=50.54 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=63.4
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceE
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILE 94 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~ 94 (252)
+.+.+...+|+.|+|--.||| .+ ...++..|+ -|+|.|| .-+.
T Consensus 200 ~AN~Amv~pGdivyDPFVGTG--sl--------Lvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fld 268 (421)
T KOG2671|consen 200 MANQAMVKPGDIVYDPFVGTG--SL--------LVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLD 268 (421)
T ss_pred HhhhhccCCCCEEecCccccC--ce--------eeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhh
Confidence 344467899999999999999 44 334566664 5888888 2234
Q ss_pred EEEccccccCCC--CceeEEEeccccc------------------------ccCChh------hHHHHHHHHhccccCCe
Q psy9773 95 VIQNKIENVELP--EKVDIIVSEWMGF------------------------YLLHES------MIDSVIFARDKFLKPEG 142 (252)
Q Consensus 95 ~~~~d~~~~~~~--~~fDlIv~~~~~~------------------------~l~~~~------~~~~~l~~l~~~LkpgG 142 (252)
++.+|...-+.. ..||.|||.+-.. |.+... .+..+|.-..+.|..||
T Consensus 269 vl~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~gg 348 (421)
T KOG2671|consen 269 VLTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGG 348 (421)
T ss_pred eeeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCc
Confidence 455555554443 5799999954211 111000 13345555678999999
Q ss_pred EEEeeccc
Q psy9773 143 VMYPYKCI 150 (252)
Q Consensus 143 ~lv~~~~~ 150 (252)
++++.-+.
T Consensus 349 rlv~w~p~ 356 (421)
T KOG2671|consen 349 RLVFWLPT 356 (421)
T ss_pred eEEEecCc
Confidence 99988763
No 271
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.79 E-value=0.068 Score=44.02 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=55.6
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEE---cccccc----------CCCCceeEEEecc
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQ---NKIENV----------ELPEKVDIIVSEW 116 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~---~d~~~~----------~~~~~fDlIv~~~ 116 (252)
+++++-+|+..= |.-..+...|+.+++.++....++.. -.+..+ ...++||++.|..
T Consensus 2 ~~~g~V~GS~~P----------wvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQP----------WVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCCc----------hhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheec
Confidence 466777776643 33666777888889999884332211 122222 1127899998854
Q ss_pred cccccC--------ChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 117 MGFYLL--------HESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 117 ~~~~l~--------~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+..+.- +..--...+.++.++|||||.|++..|.
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 432221 1112334567788999999999998873
No 272
>KOG1122|consensus
Probab=94.38 E-value=0.23 Score=46.68 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccC---C
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVE---L 105 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~---~ 105 (252)
...+|-||||+.|..|+=+. -++.++... .-++|.|. .+..+...|...++ +
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt------~IAalMkn~--G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTT------HIAALMKNT--GVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred CCCCCCeecchhcCCCchHH------HHHHHHcCC--ceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence 45678999999999997443 012223323 36888886 44555666666554 2
Q ss_pred CCceeEEEecccccc---cCC----------------hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 106 PEKVDIIVSEWMGFY---LLH----------------ESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~---l~~----------------~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
+++||-|+..--... +.- ..--.++|..+..++++||+|+-+++++
T Consensus 310 ~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 310 PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred CcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 358999987221111 110 0112356667779999999999888764
No 273
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.19 E-value=0.38 Score=37.44 Aligned_cols=85 Identities=22% Similarity=0.189 Sum_probs=62.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------CceEEEEccccccCCC--CceeEEEecccccc
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------LILEVIQNKIENVELP--EKVDIIVSEWMGFY 120 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~ 120 (252)
...+|.++|-|-= + +.+..++++|+ .++++|+ ..+++...|+++.... ...|+|.+
T Consensus 13 ~~gkVvEVGiG~~-~--------~VA~~L~e~g~-dv~atDI~~~~a~~g~~~v~DDitnP~~~iY~~A~lIYS------ 76 (129)
T COG1255 13 ARGKVVEVGIGFF-L--------DVAKRLAERGF-DVLATDINEKTAPEGLRFVVDDITNPNISIYEGADLIYS------ 76 (129)
T ss_pred cCCcEEEEccchH-H--------HHHHHHHHcCC-cEEEEecccccCcccceEEEccCCCccHHHhhCccceee------
Confidence 3348999998874 2 33677888884 6999999 4577999999888766 78999977
Q ss_pred cCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 121 LLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 121 l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+...+.+...+-.+.+.++-.-++.+-..
T Consensus 77 iRpppEl~~~ildva~aVga~l~I~pL~G 105 (129)
T COG1255 77 IRPPPELQSAILDVAKAVGAPLYIKPLTG 105 (129)
T ss_pred cCCCHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 55556777777777777766666655443
No 274
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=94.13 E-value=0.34 Score=42.95 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=55.8
Q ss_pred cHHHHHHHHHHHHh-CCCCCCCCEEEEEcCCcCc--hhhhhccCccchHHHhhcCCC--cEEEeeC-----CceEEEEcc
Q psy9773 30 DTVRNEAYRAAICD-NPNIFAGKTVLDVGTGTGK--SILLQGHGVDHHSFCTKVHPL--DHYAPQY-----LILEVIQNK 99 (252)
Q Consensus 30 ~~~~~~~~~~~l~~-~~~~~~~~~VLDlGcGtG~--~~ll~~~~v~~s~~~a~~g~~--~v~gvD~-----~~i~~~~~d 99 (252)
+...+..+...|.. ..-.+.+.|||.+|+|+-. ..- +..+.+.-+. -++..|+ +.-..+.+|
T Consensus 41 NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPG--------t~VLrqwlP~~ailvDnDi~d~vSDa~~~~~~D 112 (299)
T PF06460_consen 41 NVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPG--------TAVLRQWLPEDAILVDNDIRDYVSDADQSIVGD 112 (299)
T ss_dssp HHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HH--------HHHHHHHS-TT-EEEEEESS--B-SSSEEEES-
T ss_pred eHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCc--------hHHHHHhCCCCcEEEecchhhhccccCCceecc
Confidence 33455666666643 1335667899999998631 111 2233332222 3555566 333467899
Q ss_pred ccccCCCCceeEEEeccccc--------ccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 100 IENVELPEKVDIIVSEWMGF--------YLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 100 ~~~~~~~~~fDlIv~~~~~~--------~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
...+..+.+||+||+.+... ....+.-...+..-++..|+=||.+.+-.
T Consensus 113 c~t~~~~~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKi 169 (299)
T PF06460_consen 113 CRTYMPPDKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKI 169 (299)
T ss_dssp GGGEEESS-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCCCCcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEe
Confidence 99998889999999966421 11112223444555677888899998754
No 275
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=93.99 E-value=0.71 Score=39.27 Aligned_cols=116 Identities=9% Similarity=0.064 Sum_probs=75.4
Q ss_pred HhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC------------Cce
Q psy9773 27 MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY------------LIL 93 (252)
Q Consensus 27 ~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~------------~~i 93 (252)
.++.+.....|...|-. ..+..|++.|.-.|++.+ +.+-.+...|. .+|+++|+ ++|
T Consensus 51 ~~k~p~D~~~yQellw~----~~P~lvIE~Gs~~GGSal------~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i 120 (237)
T COG3510 51 CIKSPSDMWNYQELLWE----LQPSLVIEFGSRHGGSAL------FFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDI 120 (237)
T ss_pred ccCCHHHHHHHHHHHHh----cCCceeEeeccccCchhh------hhhHhHHhcCCCceEEEEecccCcCChhhhcCCCe
Confidence 34555666777777753 456789999999997766 33334445552 46999998 678
Q ss_pred EEEEccccccCCC-------CceeEEEe-cccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCC
Q psy9773 94 EVIQNKIENVELP-------EKVDIIVS-EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155 (252)
Q Consensus 94 ~~~~~d~~~~~~~-------~~fDlIv~-~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~ 155 (252)
.|+.++..+.... +.+--|+. ....|+ .....+.|+.+.++|..|-++++........+
T Consensus 121 ~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs---~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 121 LFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHS---MEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCch---HHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 9999998776431 22223333 222222 24556677778899999999998876544333
No 276
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=93.95 E-value=0.56 Score=41.35 Aligned_cols=110 Identities=10% Similarity=0.006 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC--CCcEEEeeC-----------------
Q psy9773 30 DTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH--PLDHYAPQY----------------- 90 (252)
Q Consensus 30 ~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g--~~~v~gvD~----------------- 90 (252)
...|...+..++.......-+..|+++||-.|+..++ +...+...+ .+++++.|-
T Consensus 55 g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~------~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~ 128 (248)
T PF05711_consen 55 GRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSIL------MRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKG 128 (248)
T ss_dssp HHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHH------HHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCH
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHH------HHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccch
Confidence 3445666666666554445667899999999964430 011111122 256888877
Q ss_pred ----------------------------CceEEEEccccccCCC---CceeEEEecccccccCChhhHHHHHHHHhcccc
Q psy9773 91 ----------------------------LILEVIQNKIENVELP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK 139 (252)
Q Consensus 91 ----------------------------~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lk 139 (252)
.++.++.|.+.+.... ..+-++....- .-..-..+|..+...|.
T Consensus 129 ~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~D-----lYesT~~aLe~lyprl~ 203 (248)
T PF05711_consen 129 WEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCD-----LYESTKDALEFLYPRLS 203 (248)
T ss_dssp CTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE--------SHHHHHHHHHHHGGGEE
T ss_pred hhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEecc-----chHHHHHHHHHHHhhcC
Confidence 4677888887555322 44555444221 11356788899999999
Q ss_pred CCeEEEeeccc
Q psy9773 140 PEGVMYPYKCI 150 (252)
Q Consensus 140 pgG~lv~~~~~ 150 (252)
|||++++....
T Consensus 204 ~GGiIi~DDY~ 214 (248)
T PF05711_consen 204 PGGIIIFDDYG 214 (248)
T ss_dssp EEEEEEESSTT
T ss_pred CCeEEEEeCCC
Confidence 99999999865
No 277
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.83 E-value=0.1 Score=45.49 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=38.5
Q ss_pred CCCCC--CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceEEEE
Q psy9773 46 NIFAG--KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILEVIQ 97 (252)
Q Consensus 46 ~~~~~--~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~~~~ 97 (252)
.+.++ .+|||.=||-|+..+ .++..|+ +|++++- .+|+++.
T Consensus 70 Glk~~~~~~VLDaTaGLG~Da~----------vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 70 GLKPGMRPSVLDATAGLGRDAF----------VLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp T-BTTB---EEETT-TTSHHHH----------HHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred CCCCCCCCEEEECCCcchHHHH----------HHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34554 489999999996544 5556675 6999998 4899999
Q ss_pred ccccccCCC--CceeEEEeccccc
Q psy9773 98 NKIENVELP--EKVDIIVSEWMGF 119 (252)
Q Consensus 98 ~d~~~~~~~--~~fDlIv~~~~~~ 119 (252)
+|..++-.. .+||+|+..+|+.
T Consensus 139 ~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 139 GDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp S-CCCHCCCHSS--SEEEE--S--
T ss_pred CCHHHHHhhcCCCCCEEEECCCCC
Confidence 999887433 7999999999854
No 278
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.42 E-value=0.24 Score=46.26 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=71.1
Q ss_pred hhhHhhhhccHHHHHHHhccHHHHHHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc--CCCcEEEe
Q psy9773 11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV--HPLDHYAP 88 (252)
Q Consensus 11 ~~~yf~~y~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~--g~~~v~gv 88 (252)
...||+..+.+......+- . . +...... ....+.+|||.=||+| .. ++..+.- +...|++-
T Consensus 18 ~~vFYNP~~~~nRDlsvl~--~--~-~~~~~~~--~~~~~~~~lDalaasG--vR--------~iRy~~E~~~~~~v~~N 80 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLA--I--R-YLAVLKE--KRKGPIRVLDALAASG--VR--------GIRYAKELAGVDKVTAN 80 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH--------HHHHHH--CH-S-EEEEETT-TTS--HH--------HHHHHHH-SSECEEEEE
T ss_pred CCcccCcchhcccceeehh--H--H-HHHHhhh--hhcCCceEEecccccc--HH--------HHHHHHHcCCCCEEEEe
Confidence 4557777777654443331 0 0 1222221 1234568999999999 77 6666553 45789999
Q ss_pred eC------------------C-ceEEEEccccccC--CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 89 QY------------------L-ILEVIQNKIENVE--LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 89 D~------------------~-~i~~~~~d~~~~~--~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
|+ . ++.+.+.|+..+. ....||+|=.++. ..+..+|..+.+.++.||+|+++
T Consensus 81 Di~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDPf-------GSp~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 81 DISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDPF-------GSPAPFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp ES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--S-------S--HHHHHHHHHHEEEEEEEEEE
T ss_pred cCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCCC-------CCccHhHHHHHHHhhcCCEEEEe
Confidence 99 2 5788888998876 4588999966443 45677888888999999999998
Q ss_pred cc
Q psy9773 148 KC 149 (252)
Q Consensus 148 ~~ 149 (252)
..
T Consensus 154 aT 155 (377)
T PF02005_consen 154 AT 155 (377)
T ss_dssp E-
T ss_pred cc
Confidence 75
No 279
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=93.39 E-value=1.2 Score=38.43 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC------------------CceEEEEccccccCCC-C
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY------------------LILEVIQNKIENVELP-E 107 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~------------------~~i~~~~~d~~~~~~~-~ 107 (252)
..+.++.|+||-.| .| +.++.+.+ +..+++.|+ +++++..+|-...--. .
T Consensus 15 ~~~~~iaDIGsDHA--YL--------p~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d 84 (226)
T COG2384 15 KQGARIADIGSDHA--YL--------PIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED 84 (226)
T ss_pred HcCCceeeccCchh--Hh--------HHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence 45566999999999 76 66766654 467889998 6677777776333222 4
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEe
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP 146 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~ 146 (252)
.+|+|+...|+.. -+..+|.+....|+.=-+|+.
T Consensus 85 ~~d~ivIAGMGG~-----lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 85 EIDVIVIAGMGGT-----LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CcCEEEEeCCcHH-----HHHHHHHHhhhhhcCcceEEE
Confidence 7999988776543 366677777666654334443
No 280
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.31 E-value=0.25 Score=39.77 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=38.5
Q ss_pred CceEEEEccccccCCC---CceeEEEecccccccCChh--------hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 91 LILEVIQNKIENVELP---EKVDIIVSEWMGFYLLHES--------MIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~---~~fDlIv~~~~~~~l~~~~--------~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.+++++...=..+..- +++|+++.+. .+++... .-...+..+.++|+|||++.+....-|
T Consensus 26 ~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 26 DRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp SGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--ST
T ss_pred CcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCC
Confidence 5789988777766432 4899998743 4454322 455677788899999999998876533
No 281
>KOG4058|consensus
Probab=93.24 E-value=0.32 Score=39.68 Aligned_cols=87 Identities=9% Similarity=0.018 Sum_probs=54.5
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~ 106 (252)
....+..+.+|+|+|.|+ + .+.+++.|..+.+|++. .+..|...|+....+.
T Consensus 68 l~~n~~GklvDlGSGDGR--i--------Vlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 68 LRGNPKGKLVDLGSGDGR--I--------VLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred ccCCCCCcEEeccCCCce--e--------ehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 344666789999999994 4 45777777777888888 5677888888777654
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.|..++.+.+-. .+..+-.++..-|..+..++...
T Consensus 138 -dy~~vviFgaes------~m~dLe~KL~~E~p~nt~vvacR 172 (199)
T KOG4058|consen 138 -DYRNVVIFGAES------VMPDLEDKLRTELPANTRVVACR 172 (199)
T ss_pred -ccceEEEeehHH------HHhhhHHHHHhhCcCCCeEEEEe
Confidence 233333322222 23334455555566677766543
No 282
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.17 E-value=0.16 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+.....|||||.| +| ...+.+-| .+-+|+|.
T Consensus 58 ~~~~FVDlGCGNG--LL--------V~IL~~EG-y~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNG--LL--------VYILNSEG-YPGWGIDA 88 (112)
T ss_pred CCCceEEccCCch--HH--------HHHHHhCC-CCcccccc
Confidence 4568999999999 88 77777777 45888888
No 283
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=93.07 E-value=0.82 Score=39.55 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=29.9
Q ss_pred ceEEEEccccccC------CCCceeEEEecc-cccccCChh-----hHHHHHHHHhccccCCeEEEeec
Q psy9773 92 ILEVIQNKIENVE------LPEKVDIIVSEW-MGFYLLHES-----MIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 92 ~i~~~~~d~~~~~------~~~~fDlIv~~~-~~~~l~~~~-----~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
...+.+.|+.+.. .....|+|+... .+....|.. -...+|..+.++|-+++++.++.
T Consensus 146 p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v~~ 214 (246)
T PF11599_consen 146 PHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAVSD 214 (246)
T ss_dssp -EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEEEE
T ss_pred chhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEEec
Confidence 4567788887742 224579999832 122222322 46789999999996666666643
No 284
>KOG2198|consensus
Probab=93.07 E-value=0.58 Score=43.35 Aligned_cols=99 Identities=16% Similarity=0.070 Sum_probs=56.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-C--cEEEeeC-----------------CceEEEEccccccC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-L--DHYAPQY-----------------LILEVIQNKIENVE 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~--~v~gvD~-----------------~~i~~~~~d~~~~~ 104 (252)
..+.+|.+|||+++..|+-++ .++.+-... . .|++=|. .++.+...++...+
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~--------qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p 222 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTA--------QLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP 222 (375)
T ss_pred cccCCCCeeeeeccCCCccHH--------HHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecc
Confidence 467899999999999997554 233222211 1 4666666 22333333333221
Q ss_pred C---------C-CceeEEEeccc-c--cccCCh----------------hh-HHHHHHHHhccccCCeEEEeecccc
Q psy9773 105 L---------P-EKVDIIVSEWM-G--FYLLHE----------------SM-IDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 105 ~---------~-~~fDlIv~~~~-~--~~l~~~----------------~~-~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
. . -.||-|+|.-- + ..+... +. -..+|.+..++|++||+++-++++.
T Consensus 223 ~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 223 NIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred ccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 1 1 46999988211 0 000000 01 2357777789999999999998763
No 285
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.19 E-value=0.92 Score=41.08 Aligned_cols=58 Identities=19% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-------------------CceEEEEccccccCCC---
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-------------------LILEVIQNKIENVELP--- 106 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~~--- 106 (252)
.-++||||||..++. +++.++ .+ -+.+|+|+ .+|.++...-...-+.
T Consensus 103 ~v~glDIGTGAscIY---------pLLg~~~~~-W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~ 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIY---------PLLGAKLYG-WSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII 172 (299)
T ss_dssp --EEEEES-TTTTHH---------HHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST
T ss_pred ceEeecCCccHHHHH---------HHHhhhhcC-CeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh
Confidence 468999999998544 344444 44 57999999 5688775533222111
Q ss_pred ---CceeEEEeccc
Q psy9773 107 ---EKVDIIVSEWM 117 (252)
Q Consensus 107 ---~~fDlIv~~~~ 117 (252)
..||+.+|++-
T Consensus 173 ~~~e~~dftmCNPP 186 (299)
T PF05971_consen 173 QPNERFDFTMCNPP 186 (299)
T ss_dssp T--S-EEEEEE---
T ss_pred cccceeeEEecCCc
Confidence 57999999885
No 286
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=92.19 E-value=0.12 Score=46.89 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=38.7
Q ss_pred ceEEEEccccccCCC--------CceeEEEecccccccC--ChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 92 ILEVIQNKIENVELP--------EKVDIIVSEWMGFYLL--HESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 92 ~i~~~~~d~~~~~~~--------~~fDlIv~~~~~~~l~--~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++.|.+.|+-....+ ...++|.....++-+. +...-.++|.++...++||.+|++..
T Consensus 176 ~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 176 NVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred eeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 467788888776543 1367776544333332 34466789999999999999998754
No 287
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.00 E-value=0.54 Score=41.84 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=40.5
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCC---CCceeEEEecc
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVEL---PEKVDIIVSEW 116 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~---~~~fDlIv~~~ 116 (252)
+|+|+.||.| .+ +..+...|...+.++|+ ..-.++.+|+..+.. .+.+|+|++.+
T Consensus 2 ~v~dLFsG~G--g~--------~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIG--GF--------RLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcc--hH--------HHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999 55 45566667778899998 122367788888753 25799999844
No 288
>PHA01634 hypothetical protein
Probab=91.92 E-value=0.21 Score=39.76 Aligned_cols=34 Identities=12% Similarity=-0.082 Sum_probs=29.1
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+++|+|+|++-| .- +++++..||+.|++++.
T Consensus 26 dvk~KtV~dIGA~iG--dS--------aiYF~l~GAK~Vva~E~ 59 (156)
T PHA01634 26 NVYQRTIQIVGADCG--SS--------ALYFLLRGASFVVQYEK 59 (156)
T ss_pred eecCCEEEEecCCcc--ch--------hhHHhhcCccEEEEecc
Confidence 467899999999999 33 66777889999999999
No 289
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.50 E-value=0.79 Score=42.20 Aligned_cols=85 Identities=22% Similarity=0.158 Sum_probs=55.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEccccccCCC---Cce
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIENVELP---EKV 109 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~---~~f 109 (252)
....+|.+|+=+|+| |--.+ +..+++ .| .+|+++|. ..-.++... ...... +.|
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~--------avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~~ 230 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHM--------AVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEIA 230 (339)
T ss_pred cCCCCCCEEEEECCc-HHHHH--------HHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhhC
Confidence 567889999999999 74344 555555 66 57999999 223344333 111111 449
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
|+|+..- . ...+....+.|++||++++....
T Consensus 231 d~ii~tv-----~-----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTV-----G-----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECC-----C-----hhhHHHHHHHHhcCCEEEEECCC
Confidence 9997722 1 23455556888999999987654
No 290
>KOG1562|consensus
Probab=91.21 E-value=0.45 Score=42.96 Aligned_cols=94 Identities=16% Similarity=0.007 Sum_probs=59.4
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC---------------------CceEEEEccccccC
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY---------------------LILEVIQNKIENVE 104 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~---------------------~~i~~~~~d~~~~~ 104 (252)
....++||-||.|.|+... ...++. ..++.-+|+ +++.++-||-..+-
T Consensus 119 ~~npkkvlVVgggDggvlr----------evikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl 188 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLR----------EVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFL 188 (337)
T ss_pred CCCCCeEEEEecCCcccee----------eeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHH
Confidence 3556899999999994333 222221 124444544 77888888876662
Q ss_pred --C-CCceeEEEecccccccCChh-hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 --L-PEKVDIIVSEWMGFYLLHES-MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 --~-~~~fDlIv~~~~~~~l~~~~-~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
. .++||+|+....--..+... -...++..+.+.||+||+++...-+
T Consensus 189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 2 28899999843211121111 2345667778999999999987644
No 291
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=90.77 E-value=0.82 Score=37.18 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=46.1
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-----CCceeEEEe
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-----PEKVDIIVS 114 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-----~~~fDlIv~ 114 (252)
..-|||+|-|.|++.- .+.- ....+.++.+|- ..-.++.+|+.+.-. ..+.-++.+
T Consensus 29 ~G~VlElGLGNGRTyd--------HLRe-~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~tl~~~~~~g~~a~laHa 99 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYD--------HLRE-IFPDRRIYVFDRALACHPSSTPPEEDLILGDIRETLPALARFGAGAALAHA 99 (160)
T ss_dssp -S-EEEE--TTSHHHH--------HHHH-H--SS-EEEEESS--S-GGG---GGGEEES-HHHHHHHHHHH-S-EEEEEE
T ss_pred CCceEEeccCCCccHH--------HHHH-hCCCCeEEEEeeecccCCCCCCchHheeeccHHHHhHHHHhcCCceEEEEe
Confidence 3679999999996543 2222 233478999998 344688999876622 145667766
Q ss_pred cccccccCChhhHHHHH-HHHhccccCCeEEEeecc
Q psy9773 115 EWMGFYLLHESMIDSVI-FARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 115 ~~~~~~l~~~~~~~~~l-~~l~~~LkpgG~lv~~~~ 149 (252)
..-.+.-.........+ .-+..+|.|||+++-..+
T Consensus 100 D~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~p 135 (160)
T PF12692_consen 100 DIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQP 135 (160)
T ss_dssp ----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS-
T ss_pred ecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCc
Confidence 44322211111122222 235789999999987654
No 292
>KOG3924|consensus
Probab=90.48 E-value=0.59 Score=43.70 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=62.1
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------------------------CceEEEEc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------------------------LILEVIQN 98 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------------------------~~i~~~~~ 98 (252)
..+.++....|+|+|.|+... ..++..+++.-+|+++ ..+.++++
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~---------~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~g 258 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVC---------FVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHG 258 (419)
T ss_pred hccCCCCcccCCCcccchhhH---------HHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccc
Confidence 567888999999999994432 4455566677788887 44667777
Q ss_pred cccccCCC----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 99 KIENVELP----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 99 d~~~~~~~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+..+...- ...++|+++.+.+ .+ ++..=+..+..-+++|.+++-..+
T Consensus 259 sf~~~~~v~eI~~eatvi~vNN~~F---dp-~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 259 SFLDPKRVTEIQTEATVIFVNNVAF---DP-ELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred ccCCHHHHHHHhhcceEEEEecccC---CH-HHHHhhHHHHhhCCCcceEecccc
Confidence 76655332 5789999877633 22 333333466677788988876654
No 293
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=90.21 E-value=1.5 Score=42.46 Aligned_cols=106 Identities=13% Similarity=0.032 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC--------------CceE----EE
Q psy9773 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY--------------LILE----VI 96 (252)
Q Consensus 36 ~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~--------------~~i~----~~ 96 (252)
.+.+.|.......+..+|+|..||||+..+ . ....+.+.. ....+|.++ +.+. ..
T Consensus 173 ~v~~liv~~l~~~~~~~i~DpacGsgg~l~--~----a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~ 246 (489)
T COG0286 173 EVSELIVELLDPEPRNSIYDPACGSGGMLL--Q----AAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR 246 (489)
T ss_pred HHHHHHHHHcCCCCCCeecCCCCchhHHHH--H----HHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc
Confidence 344444443333566799999999995443 0 011111111 145888886 3333 33
Q ss_pred EccccccCC-----C-CceeEEEecccccccC---------------------C-hhhHHHHHHHHhccccCCeEEEee
Q psy9773 97 QNKIENVEL-----P-EKVDIIVSEWMGFYLL---------------------H-ESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 97 ~~d~~~~~~-----~-~~fDlIv~~~~~~~l~---------------------~-~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
.+|...-+. . +.||+|++++-..... . ......++..+...|+|||+.-+.
T Consensus 247 ~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 247 HGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 333322221 1 5699999955432000 0 012267888889999998755443
No 294
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=90.16 E-value=0.59 Score=42.45 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=42.9
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCC---
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVEL--- 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~--- 105 (252)
....++..++|.=||.|+.+. .++ ...+..+|+|+|. .++.+++++..++..
T Consensus 16 L~~~~ggiyVD~TlG~GGHS~--------~iL-~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 16 LNIKPDGIYIDCTLGFGGHSK--------AIL-EQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred cCcCCCCEEEEeCCCChHHHH--------HHH-HhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHH
Confidence 345678899999999997765 332 2233367999998 378888888776521
Q ss_pred --C-CceeEEEec
Q psy9773 106 --P-EKVDIIVSE 115 (252)
Q Consensus 106 --~-~~fDlIv~~ 115 (252)
. .++|.|+.+
T Consensus 87 ~~~~~~vDgIl~D 99 (305)
T TIGR00006 87 ELLVTKIDGILVD 99 (305)
T ss_pred hcCCCcccEEEEe
Confidence 1 457777773
No 295
>PRK11524 putative methyltransferase; Provisional
Probab=90.06 E-value=0.35 Score=43.22 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=38.9
Q ss_pred ceEEEEcccccc--CCC-CceeEEEecccccccC-------------ChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 92 ILEVIQNKIENV--ELP-EKVDIIVSEWMGFYLL-------------HESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 92 ~i~~~~~d~~~~--~~~-~~fDlIv~~~~~~~l~-------------~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
...++++|+.++ .++ ++||+|++++-..... +..-+..++..+.++|+|||.|++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 346788888875 233 7899999975321100 00123578899999999999999854
No 296
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=89.27 E-value=2.1 Score=37.83 Aligned_cols=89 Identities=9% Similarity=0.003 Sum_probs=60.7
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccC-------
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVE------- 104 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~------- 104 (252)
..|+.||||-- +. ...+.......++-+|. .+..++.+|+....
T Consensus 83 ~qvV~LGaGlD--Tr--------~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~ 152 (260)
T TIGR00027 83 RQVVILGAGLD--TR--------AYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAA 152 (260)
T ss_pred cEEEEeCCccc--cH--------HHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhC
Confidence 57999999987 55 33332221135666666 46778888886210
Q ss_pred -CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 -LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 -~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+. ...-++++..++.++.. .....+|..+.+...||+.+++....
T Consensus 153 gfd~~~ptl~i~EGvl~YL~~-~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYLTE-EAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CCCCCCCeeeeecchhhcCCH-HHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 11 34668888887777644 46888999998888899999998654
No 297
>KOG1098|consensus
Probab=89.10 E-value=0.8 Score=45.21 Aligned_cols=93 Identities=12% Similarity=0.010 Sum_probs=55.0
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCC-CcEEEeeC------CceEEEEccccccCCC---------C
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHP-LDHYAPQY------LILEVIQNKIENVELP---------E 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~-~~v~gvD~------~~i~~~~~d~~~~~~~---------~ 107 (252)
..+.++..||||||..| .+ ...+.. .+. .-|+|+|+ +++..++.|++..... -
T Consensus 40 ~fl~~a~~vlDLcaAPG--~W--------~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPG--GW--------LQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred ccccccchheeeccCCc--HH--------HHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhC
Confidence 44567889999999999 55 333333 333 35899999 4455556676544211 3
Q ss_pred ceeEEEeccccccc-CChhh-------HHHHHHHHhccccCCeEEEee
Q psy9773 108 KVDIIVSEWMGFYL-LHESM-------IDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 108 ~fDlIv~~~~~~~l-~~~~~-------~~~~l~~l~~~LkpgG~lv~~ 147 (252)
+.|+|+...+.+.- .|..+ ....|.-+...|+.||.|+--
T Consensus 110 ~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtk 157 (780)
T KOG1098|consen 110 KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTK 157 (780)
T ss_pred CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccc
Confidence 57999885432111 01111 123344456788999997643
No 298
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=88.72 E-value=1.8 Score=34.14 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------CceEEEEccccccCCC--CceeEEEecccccc
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------LILEVIQNKIENVELP--EKVDIIVSEWMGFY 120 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------~~i~~~~~d~~~~~~~--~~fDlIv~~~~~~~ 120 (252)
...+|.++|-|.- ... +..+...| ..|+++|+ ..+.++.-|+.+..+. ...|+|.+
T Consensus 13 ~~~kiVEVGiG~~-~~v--------A~~L~~~G-~dV~~tDi~~~~a~~g~~~v~DDif~P~l~iY~~a~lIYS------ 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFN-PEV--------AKKLKERG-FDVIATDINPRKAPEGVNFVVDDIFNPNLEIYEGADLIYS------ 76 (127)
T ss_dssp -SSEEEEET-TT---HH--------HHHHHHHS--EEEEE-SS-S----STTEE---SSS--HHHHTTEEEEEE------
T ss_pred CCCcEEEECcCCC-HHH--------HHHHHHcC-CcEEEEECcccccccCcceeeecccCCCHHHhcCCcEEEE------
Confidence 3459999999985 233 66677787 57999999 3678888888876554 78999988
Q ss_pred cCChhhHHHHHHHHhccccCCeEEE
Q psy9773 121 LLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 121 l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
+...+++...+.++.+.+.-+-++.
T Consensus 77 iRPP~El~~~il~lA~~v~adlii~ 101 (127)
T PF03686_consen 77 IRPPPELQPPILELAKKVGADLIIR 101 (127)
T ss_dssp ES--TTSHHHHHHHHHHHT-EEEEE
T ss_pred eCCChHHhHHHHHHHHHhCCCEEEE
Confidence 3334456666666665554443333
No 299
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.91 E-value=1.7 Score=42.28 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccc-----------c--
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIEN-----------V-- 103 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~-----------~-- 103 (252)
..++.+|+=+|||.=+..- ...+...|+ .|+++|. -..+++..+..+ .
T Consensus 162 ~~pg~kVlViGaG~iGL~A--------i~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAA--------IGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred CcCCCEEEEECCcHHHHHH--------HHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcch
Confidence 4578999999999743322 233444776 6999999 223333222211 0
Q ss_pred C---------CC--CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 104 E---------LP--EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 104 ~---------~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
. .. ..+|+||.... .+..+.+..+...+.+.+||||.++....
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIetag---~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITTAL---IPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEECCC---CCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 0 01 35999988332 23323343445888899999999886543
No 300
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.98 E-value=6.6 Score=34.80 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=41.2
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhc------CCCcEEEeeC--------------C---ce
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV------HPLDHYAPQY--------------L---IL 93 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~------g~~~v~gvD~--------------~---~i 93 (252)
+...|.......++..++|+|||.| .| +.+++.. ....++.||- . .+
T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg--~L--------S~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~~ 75 (259)
T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRG--EL--------SRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPKF 75 (259)
T ss_pred HHHHHHHcCCCCCCCEEEEECCCch--HH--------HHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCce
Confidence 3444544444567789999999999 66 6665553 2346788888 1 46
Q ss_pred EEEEccccccCCC
Q psy9773 94 EVIQNKIENVELP 106 (252)
Q Consensus 94 ~~~~~d~~~~~~~ 106 (252)
.-+..|+.++.+.
T Consensus 76 ~R~riDI~dl~l~ 88 (259)
T PF05206_consen 76 ERLRIDIKDLDLS 88 (259)
T ss_pred EEEEEEeeccchh
Confidence 7788899888654
No 301
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.95 E-value=1.7 Score=40.11 Aligned_cols=94 Identities=16% Similarity=0.056 Sum_probs=53.1
Q ss_pred CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeCC-----------ceEEEEccccc-c-------
Q psy9773 45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQYL-----------ILEVIQNKIEN-V------- 103 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~~-----------~i~~~~~d~~~-~------- 103 (252)
....++.+||.+|||+ | .+ +..+++ .|..++++++.. ...++...-.+ +
T Consensus 180 ~~~~~g~~VlV~g~G~vG--~~--------~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~ 249 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVG--LF--------AARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL 249 (386)
T ss_pred ccCCCCCEEEEECCCHHH--HH--------HHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH
Confidence 4567889999999876 5 33 333333 555468888761 22333211111 1
Q ss_pred CCCCceeEEEecccccc------------cCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 104 ELPEKVDIIVSEWMGFY------------LLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 104 ~~~~~fDlIv~~~~~~~------------l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.....+|+|+-...... +....+....+..+.+.|+|+|+++...
T Consensus 250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 11136899877321100 0111223456777889999999998764
No 302
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=86.84 E-value=1.3 Score=39.30 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=39.2
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCC--C-ceeEEEec
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELP--E-KVDIIVSE 115 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~--~-~fDlIv~~ 115 (252)
+++||.||.| .+ +.-+...|...+.++|+ .. ....+|+..+... . .+|+++..
T Consensus 2 ~~~dlFsG~G--g~--------~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIG--GF--------SLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTT--HH--------HHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCcc--HH--------HHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccccccccccccceEEEec
Confidence 6999999999 55 55666667677999999 22 8889999988643 3 59999883
No 303
>PRK11524 putative methyltransferase; Provisional
Probab=86.44 E-value=1.3 Score=39.60 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=27.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
....+|..|||.-||+| +- +..+.+.| ++.+|+|+
T Consensus 204 ~~S~~GD~VLDPF~GSG--TT--------~~AA~~lg-R~~IG~Ei 238 (284)
T PRK11524 204 ASSNPGDIVLDPFAGSF--TT--------GAVAKASG-RKFIGIEI 238 (284)
T ss_pred HhCCCCCEEEECCCCCc--HH--------HHHHHHcC-CCEEEEeC
Confidence 34689999999999999 54 44555565 68999999
No 304
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=86.25 E-value=0.9 Score=37.98 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+|..|||.-||+| +- +..+...| ++.+|+|+
T Consensus 188 ~t~~gdiVlDpF~GSG--TT--------~~aa~~l~-R~~ig~E~ 221 (231)
T PF01555_consen 188 STNPGDIVLDPFAGSG--TT--------AVAAEELG-RRYIGIEI 221 (231)
T ss_dssp HS-TT-EEEETT-TTT--HH--------HHHHHHTT--EEEEEES
T ss_pred hhccceeeehhhhccC--hH--------HHHHHHcC-CeEEEEeC
Confidence 3577999999999999 65 45555565 67999987
No 305
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=84.87 E-value=2.6 Score=37.66 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=49.6
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-CCceeEEE
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-PEKVDIIV 113 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-~~~fDlIv 113 (252)
....+|....|+|+..| -+ +..+.+++. .|++||. ..++....|-..+.+ +...|-.+
T Consensus 207 ~rL~~~M~avDLGAcPG--GW--------TyqLVkr~m-~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P~r~~idWmV 275 (358)
T COG2933 207 KRLAPGMWAVDLGACPG--GW--------TYQLVKRNM-RVYAVDNGPMAQSLMDTGQVTHLREDGFKFRPTRSNIDWMV 275 (358)
T ss_pred hhhcCCceeeecccCCC--cc--------chhhhhcce-EEEEeccchhhhhhhcccceeeeeccCcccccCCCCCceEE
Confidence 45678899999999999 55 667777764 6999998 678888888888865 47899999
Q ss_pred eccc
Q psy9773 114 SEWM 117 (252)
Q Consensus 114 ~~~~ 117 (252)
|.++
T Consensus 276 CDmV 279 (358)
T COG2933 276 CDMV 279 (358)
T ss_pred eehh
Confidence 9765
No 306
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.53 E-value=2.4 Score=38.49 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=37.6
Q ss_pred EEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC--CceeEEEec
Q psy9773 53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP--EKVDIIVSE 115 (252)
Q Consensus 53 VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~--~~fDlIv~~ 115 (252)
|+||.||.| -+ +.-+...|..-+.++|+ +. .++.+|+.++... ..+|+++..
T Consensus 1 vidLF~G~G--G~--------~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIG--GI--------RLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCcc--HH--------HHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999 55 55555667666778998 22 4567888887543 468999883
No 307
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=84.48 E-value=3.1 Score=34.31 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=30.6
Q ss_pred CceeEEEeccccccc-----------CChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYL-----------LHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l-----------~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.||.||-+.- |.- .+..-+..+|..+.++|+++|.+.++...
T Consensus 74 ~~FDrIiFNFP-H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~ 127 (166)
T PF10354_consen 74 QRFDRIIFNFP-HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKD 127 (166)
T ss_pred CcCCEEEEeCC-CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 67999987442 211 11124667888899999999999998765
No 308
>PRK13699 putative methylase; Provisional
Probab=84.39 E-value=1.2 Score=38.60 Aligned_cols=55 Identities=16% Similarity=0.255 Sum_probs=36.4
Q ss_pred eEEEEcccccc--CCC-CceeEEEecccccc-cC---C--------hhhHHHHHHHHhccccCCeEEEee
Q psy9773 93 LEVIQNKIENV--ELP-EKVDIIVSEWMGFY-LL---H--------ESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 93 i~~~~~d~~~~--~~~-~~fDlIv~~~~~~~-l~---~--------~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
++++++|..+. .++ +++|+|+.++--.. .. . ..-+..++.++.|+|||||.+++.
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35677888765 344 78999998653210 00 0 012457889999999999999864
No 309
>KOG1227|consensus
Probab=83.97 E-value=0.29 Score=44.24 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCce
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKV 109 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~f 109 (252)
-.+..|.|+-+|-|.+++ . ++...|++.|+|+|. .+..++.+|-+...+....
T Consensus 193 c~~eviVDLYAGIGYFTl--------p-flV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~A 263 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTL--------P-FLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRA 263 (351)
T ss_pred cccchhhhhhcccceEEe--------e-hhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccc
Confidence 345789999999996655 2 556688999999999 3344556666666655778
Q ss_pred eEEEecccccccCCh-hhHHHHHHHHhccccC-CeEEEe
Q psy9773 110 DIIVSEWMGFYLLHE-SMIDSVIFARDKFLKP-EGVMYP 146 (252)
Q Consensus 110 DlIv~~~~~~~l~~~-~~~~~~l~~l~~~Lkp-gG~lv~ 146 (252)
|-|.. ..++.. ..+. .+.++|+| ||-++-
T Consensus 264 drVnL----GLlPSse~~W~----~A~k~Lk~eggsilH 294 (351)
T KOG1227|consen 264 DRVNL----GLLPSSEQGWP----TAIKALKPEGGSILH 294 (351)
T ss_pred hheee----ccccccccchH----HHHHHhhhcCCcEEE
Confidence 88865 334322 2333 33467787 442443
No 310
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=83.91 E-value=2.2 Score=42.67 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=34.7
Q ss_pred eEEEEccccccCC--CCceeEEEecccccccCChhhH-HHHHHHHhccccCCeEEEeec
Q psy9773 93 LEVIQNKIENVEL--PEKVDIIVSEWMGFYLLHESMI-DSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 93 i~~~~~d~~~~~~--~~~fDlIv~~~~~~~l~~~~~~-~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++++.+|+.+.-. ...||+++....+-. .+...+ ..+|..+.++++|||+|.-.+
T Consensus 149 l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~-~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 149 LDLWFGDANELLPQLDARADAWFLDGFAPA-KNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEEEecCHHHHHHhccccccEEEeCCCCCc-cChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 3456677765422 256999988553211 111111 478999999999999998443
No 311
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=83.42 E-value=18 Score=29.80 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=60.7
Q ss_pred HHHHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC--------CceEEEEcccccc-CC
Q psy9773 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY--------LILEVIQNKIENV-EL 105 (252)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~--------~~i~~~~~d~~~~-~~ 105 (252)
..+.+.+.. ....+.+|+-|||=|- .. .+........+++..|+ .. .|+.-|.... ..
T Consensus 13 ~~l~~~l~~--~~~~~~~iaclstPsl--~~--------~l~~~~~~~~~~~Lle~D~RF~~~~~~-~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 13 EFLARELLD--GALDDTRIACLSTPSL--YE--------ALKKESKPRIQSFLLEYDRRFEQFGGD-EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHH--hcCCCCEEEEEeCcHH--HH--------HHHhhcCCCccEEEEeecchHHhcCCc-ceEECCCCChhhh
Confidence 444555543 2345689999999885 22 11111122356777777 12 3555555443 22
Q ss_pred C----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 106 P----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 106 ~----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+ ++||+||+.+-. ....-+..+...++.++++++.+++.++.
T Consensus 80 ~~~l~~~~d~vv~DPPF---l~~ec~~k~a~ti~~L~k~~~kii~~Tg~ 125 (162)
T PF10237_consen 80 PEELKGKFDVVVIDPPF---LSEECLTKTAETIRLLLKPGGKIILCTGE 125 (162)
T ss_pred hhhcCCCceEEEECCCC---CCHHHHHHHHHHHHHHhCccceEEEecHH
Confidence 2 789999998752 34445556667777777899999887764
No 312
>KOG1253|consensus
Probab=83.19 E-value=0.35 Score=46.36 Aligned_cols=86 Identities=13% Similarity=0.006 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhh--cCCCcEEEeeC------------------CceEEEEccccccCCC-
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK--VHPLDHYAPQY------------------LILEVIQNKIENVELP- 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~--~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~- 106 (252)
..+.+|||.=|+|| +. ++..+. -|..+|++-|. ..+.....|+..+...
T Consensus 108 ~~~l~vLealsAtG--lr--------slRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 108 EKSLRVLEALSATG--LR--------SLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH 177 (525)
T ss_pred cCcchHHHHhhhhh--HH--------HHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc
Confidence 44578999999999 76 666555 23456777777 2233445555554322
Q ss_pred ----CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 ----EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ----~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..||+|-..+. .....+|..+.+.++.||+|+++...
T Consensus 178 ~~~~~~FDvIDLDPy-------Gs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 178 PMVAKFFDVIDLDPY-------GSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cccccccceEecCCC-------CCccHHHHHHHHHhhcCCEEEEEecc
Confidence 67999976553 34556888888999999999998754
No 313
>PRK13699 putative methylase; Provisional
Probab=82.30 E-value=3 Score=36.06 Aligned_cols=34 Identities=15% Similarity=0.013 Sum_probs=26.0
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+|..|||.-||+| +. ...+.+.| .+.+|+|+
T Consensus 160 ~s~~g~~vlDpf~Gsg--tt--------~~aa~~~~-r~~~g~e~ 193 (227)
T PRK13699 160 FTHPNAIVLDPFAGSG--ST--------CVAALQSG-RRYIGIEL 193 (227)
T ss_pred hCCCCCEEEeCCCCCC--HH--------HHHHHHcC-CCEEEEec
Confidence 3568899999999999 54 44455555 67899988
No 314
>KOG0024|consensus
Probab=81.59 E-value=7.6 Score=35.67 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeC----------CceEEEEccccc--cC------
Q psy9773 45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LILEVIQNKIEN--VE------ 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i~~~~~d~~~--~~------ 104 (252)
.....|.+||=+|+|. | ++ +.+.++ .|+.+|+.+|+ -..+.+..+... ..
T Consensus 165 ~~vk~Gs~vLV~GAGPIG--l~--------t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIG--LL--------TGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELV 234 (354)
T ss_pred cCcccCCeEEEECCcHHH--HH--------HHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHH
Confidence 6788999999999995 5 44 555555 78889999999 111111111110 10
Q ss_pred ---CC-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 ---LP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ---~~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.. ..+|+.+-.. -....++.....+++||.+++....
T Consensus 235 ~~~~g~~~~d~~~dCs---------G~~~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCS---------GAEVTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred HhhccccCCCeEEEcc---------CchHHHHHHHHHhccCCEEEEeccC
Confidence 01 3478876522 1234455566788999998876643
No 315
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=80.83 E-value=3.5 Score=38.37 Aligned_cols=83 Identities=17% Similarity=0.074 Sum_probs=59.5
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------------CceEEEEccccccCCC--Cce
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------------LILEVIQNKIENVELP--EKV 109 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--~~f 109 (252)
..+|||.=|||| +. ++..+. .+..+|+.=|+ ..+..+..|+..+... ..|
T Consensus 53 ~~~v~DalsatG--iR--------gIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~f 122 (380)
T COG1867 53 PKRVLDALSATG--IR--------GIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAF 122 (380)
T ss_pred CeEEeecccccc--hh--------HhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCc
Confidence 789999999999 77 666555 44336888888 2344555677666544 789
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+|=..+. ..+..++..+.+.++.||+|.++..
T Consensus 123 d~IDiDPF-------GSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 123 DVIDIDPF-------GSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cEEecCCC-------CCCchHHHHHHHHhhcCCEEEEEec
Confidence 99955442 3455677777788899999998764
No 316
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=78.89 E-value=5.2 Score=36.45 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=41.4
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC---C-ceeEEE
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP---E-KVDIIV 113 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~---~-~fDlIv 113 (252)
..+++||.||.| -+ ++-+...|..-+.++|+ ....++..|+..+... . .+|+|+
T Consensus 3 ~~~~idLFsG~G--G~--------~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIG--GL--------SLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCc--hH--------HHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEE
Confidence 357999999999 55 55666667777889999 2256777888777543 2 789999
Q ss_pred ecc
Q psy9773 114 SEW 116 (252)
Q Consensus 114 ~~~ 116 (252)
..+
T Consensus 73 gGp 75 (328)
T COG0270 73 GGP 75 (328)
T ss_pred eCC
Confidence 833
No 317
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=77.70 E-value=4.4 Score=37.11 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=55.4
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCC-CceeEEEecc
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELP-EKVDIIVSEW 116 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~-~~fDlIv~~~ 116 (252)
.+|.=+|.|.-+..- +..+.-.|+ +|+-+|. .++.....+..++... ..+|++|..-
T Consensus 169 ~kv~iiGGGvvgtna--------AkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV 239 (371)
T COG0686 169 AKVVVLGGGVVGTNA--------AKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV 239 (371)
T ss_pred ccEEEECCccccchH--------HHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence 556667777543332 334444554 6888888 4455555554444333 6799999843
Q ss_pred cccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773 117 MGFYLLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
. ++....+.-+.+++.+.|+||+.++
T Consensus 240 L---IpgakaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 240 L---IPGAKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred E---ecCCCCceehhHHHHHhcCCCcEEE
Confidence 3 5666778888899899999999997
No 318
>KOG2539|consensus
Probab=77.46 E-value=2.8 Score=40.11 Aligned_cols=98 Identities=9% Similarity=-0.033 Sum_probs=54.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------C----ceEEEEc-ccccc--C
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------L----ILEVIQN-KIENV--E 104 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~----~i~~~~~-d~~~~--~ 104 (252)
........++|+|.|.|.-.. ....+-+....-++.||. + .-.++.. -+... +
T Consensus 196 ~p~f~pd~~~dfgsg~~~~~~-------a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~p 268 (491)
T KOG2539|consen 196 SPKFRPDLLRDFGSGAGNGGW-------AAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLP 268 (491)
T ss_pred CcccChHHHHHHHhhcccchh-------hhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCC
Confidence 345566789999999883332 222222222345667777 1 0111111 11111 2
Q ss_pred CC--CceeEEEecccccccCChhhHHHHHHH-HhccccCCeEEEeecc
Q psy9773 105 LP--EKVDIIVSEWMGFYLLHESMIDSVIFA-RDKFLKPEGVMYPYKC 149 (252)
Q Consensus 105 ~~--~~fDlIv~~~~~~~l~~~~~~~~~l~~-l~~~LkpgG~lv~~~~ 149 (252)
.+ +.||+|+|...++.+.+......+... +.+..++||.+++...
T Consensus 269 i~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 269 IDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred CCcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 22 569999998887776554443344443 4667788999987654
No 319
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=74.72 E-value=6.7 Score=38.23 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccc-----------c--
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIEN-----------V-- 103 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~-----------~-- 103 (252)
..++.+||=+|||.=+... ...+...|+ .|+++|. -...++..+... .
T Consensus 161 ~vp~akVlViGaG~iGl~A--------a~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~ 231 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAA--------IGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSE 231 (511)
T ss_pred CCCCCEEEEECCCHHHHHH--------HHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCH
Confidence 3457899999998653333 334444675 4888888 223343333211 0
Q ss_pred --C------CC---CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEE
Q psy9773 104 --E------LP---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 104 --~------~~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
. ++ ..+|+||..-. ++..+.+.-+...+.+.+|||+.++
T Consensus 232 ~~~~~~~~~~~e~~~~~DIVI~Tal---ipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 232 EFIAAEMELFAAQAKEVDIIITTAL---IPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcc---cCCCCCCeeehHHHHhhCCCCCEEE
Confidence 0 11 46999988443 3444444456677789999999987
No 320
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=72.75 E-value=39 Score=27.57 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=38.3
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCC-cEEEeeC-----------CceEEEEccccccCCCCceeEEEec
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY-----------LILEVIQNKIENVELPEKVDIIVSE 115 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~-----------~~i~~~~~d~~~~~~~~~fDlIv~~ 115 (252)
..|++|.=.|+|+.+.++ ..++ ..+.. -.+.+|. .++.++.-+.... ...|+|+..
T Consensus 66 ~~gk~I~~yGA~~kg~tl--------ln~~-g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~---~~pd~vivl 133 (160)
T PF08484_consen 66 AEGKRIAGYGAGAKGNTL--------LNYF-GLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKE---RKPDYVIVL 133 (160)
T ss_dssp HTT--EEEE---SHHHHH--------HHHH-T--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--S---S--SEEEES
T ss_pred HcCCEEEEECcchHHHHH--------HHHh-CCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhh---CCCCEEEEc
Confidence 467899999999987766 2222 22111 2445565 2333333221111 346877651
Q ss_pred ccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 116 ~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
. . .-...++..+...+..||.|++-.
T Consensus 134 a-w------~y~~EI~~~~~~~~~~gg~fi~pl 159 (160)
T PF08484_consen 134 A-W------NYKDEIIEKLREYLERGGKFIVPL 159 (160)
T ss_dssp --G------GGHHHHHHHTHHHHHTT-EEEE-S
T ss_pred C-h------hhHHHHHHHHHHHHhcCCEEEEeC
Confidence 1 1 134677888888889999999754
No 321
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=72.14 E-value=11 Score=34.00 Aligned_cols=86 Identities=15% Similarity=0.151 Sum_probs=46.0
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeC----------CceE-EEE---ccccccCC-CCce
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQY----------LILE-VIQ---NKIENVEL-PEKV 109 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~----------~~i~-~~~---~d~~~~~~-~~~f 109 (252)
...++.+||=.|||.=+ .+ +..++ ..|+.+|++++. .... ++. .++..+.. .+.+
T Consensus 166 ~~~~g~~VlV~G~G~vG-~~--------aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~ 236 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIG-CL--------IVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCCEEEEECCCHHH-HH--------HHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence 34578899999875211 22 23333 356667888876 1111 111 11111111 1458
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
|+|+-... . ...+..+.++|++||+++....
T Consensus 237 D~vid~~G-----~----~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG-----H----PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC-----C----HHHHHHHHHHhhcCCEEEEEcc
Confidence 98875221 1 1244556688899999987654
No 322
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.62 E-value=4.5 Score=37.88 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=47.2
Q ss_pred CceEEEEccccccCC---CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 LILEVIQNKIENVEL---PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~---~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+++++.+++.+... ++++|.++......++.. ..+...+..+.+.++|||++++-+..
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~-~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDP-EQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCH-HHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 788999999988732 489999988655555533 57889999999999999999987754
No 323
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=71.34 E-value=30 Score=30.90 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHh----hcC-CCcEEEeeC------------------CceEEEEccccc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT----KVH-PLDHYAPQY------------------LILEVIQNKIEN 102 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a----~~g-~~~v~gvD~------------------~~i~~~~~d~~~ 102 (252)
.+..+...+|+|+|+. .- +..+. ..+ +.+.+.+|+ -.+.-+++|...
T Consensus 75 ~~~g~~~lveLGsGns--~K--------tr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~ 144 (321)
T COG4301 75 SITGACTLVELGSGNS--TK--------TRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL 144 (321)
T ss_pred HhhCcceEEEecCCcc--HH--------HHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH
Confidence 3455789999999988 43 22221 122 246778888 234445555532
Q ss_pred c--CCCCceeEEEecc--cccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 103 V--ELPEKVDIIVSEW--MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 103 ~--~~~~~fDlIv~~~--~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
. .+++.---+++.. .+.. ........+|..+...|+||-.|++..-
T Consensus 145 ~La~~~~~~~Rl~~flGStlGN-~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 145 ALAELPRGGRRLFVFLGSTLGN-LTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred HHhcccCCCeEEEEEecccccC-CChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 2 1222222233311 1111 2344678899999999999999988653
No 324
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=71.16 E-value=13 Score=33.61 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=60.1
Q ss_pred CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcC-CCcEEEeeC-----------------CceEEEEccccccCC
Q psy9773 44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVH-PLDHYAPQY-----------------LILEVIQNKIENVEL 105 (252)
Q Consensus 44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g-~~~v~gvD~-----------------~~i~~~~~d~~~~~~ 105 (252)
.++...|+.|+-+|-- - +. ++.++-.| ++++..+|+ +++..+..|+++.-+
T Consensus 147 ~RGDL~gK~I~vvGDD-D--Lt--------sia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plp 215 (354)
T COG1568 147 SRGDLEGKEIFVVGDD-D--LT--------SIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLP 215 (354)
T ss_pred cccCcCCCeEEEEcCc-h--hh--------HHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccCh
Confidence 3566778899999932 2 33 33333322 478889998 668888888877643
Q ss_pred C---CceeEEEecccccccCChhhHHHHHHHHhccccCC---eEEEeec
Q psy9773 106 P---EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPE---GVMYPYK 148 (252)
Q Consensus 106 ~---~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~Lkpg---G~lv~~~ 148 (252)
. ..||+.+..+. . ....+..++.+=...|+.- |++.++.
T Consensus 216 e~~~~kFDvfiTDPp-e---Ti~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 216 EDLKRKFDVFITDPP-E---TIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred HHHHhhCCeeecCch-h---hHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 3 78999988664 2 2256777777766777764 6666654
No 325
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.12 E-value=18 Score=32.67 Aligned_cols=89 Identities=11% Similarity=0.102 Sum_probs=64.0
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------CceEEEEccccccCCC----
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------------LILEVIQNKIENVELP---- 106 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------------~~i~~~~~d~~~~~~~---- 106 (252)
-..|+-||||-- +. ...+......+|+-+|. .+.+++..|+.....+
T Consensus 93 ~~qvViLgaGLD--TR--------ayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~ 162 (297)
T COG3315 93 IRQVVILGAGLD--TR--------AYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALA 162 (297)
T ss_pred ccEEEEeccccc--cc--------eeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHH
Confidence 478999999976 44 33333321146888887 2788999999844322
Q ss_pred ------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 ------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
...-++++..++.+++.. ....+|..+..++.||.++++...
T Consensus 163 ~~G~d~~~pt~~iaEGLl~YL~~~-~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 163 AAGFDRSRPTLWIAEGLLMYLPEE-AVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred hcCCCcCCCeEEEeccccccCCHH-HHHHHHHHHHHhCCCCceEEEecc
Confidence 456788888887777544 588999999999989999888764
No 326
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=69.88 E-value=17 Score=31.99 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=11.6
Q ss_pred CCCEEEEEcCCcCch
Q psy9773 49 AGKTVLDVGTGTGKS 63 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~ 63 (252)
++.++||||.|..++
T Consensus 78 ~~i~~LDIGvGAnCI 92 (292)
T COG3129 78 KNIRILDIGVGANCI 92 (292)
T ss_pred CceEEEeeccCcccc
Confidence 456899999998743
No 327
>KOG2651|consensus
Probab=69.07 E-value=7.1 Score=36.68 Aligned_cols=35 Identities=29% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
....-..|.|+|+|.| .+ +.++.-...-+|+|||-
T Consensus 150 ~f~gi~~vvD~GaG~G--~L--------Sr~lSl~y~lsV~aIeg 184 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQG--HL--------SRFLSLGYGLSVKAIEG 184 (476)
T ss_pred hhcCCCeeEEcCCCch--HH--------HHHHhhccCceEEEecc
Confidence 3444478999999999 87 77766543357999998
No 328
>PRK10458 DNA cytosine methylase; Provisional
Probab=67.64 E-value=42 Score=32.39 Aligned_cols=45 Identities=9% Similarity=0.101 Sum_probs=31.1
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------C------ceEEEEccccccC
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------L------ILEVIQNKIENVE 104 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~------~i~~~~~d~~~~~ 104 (252)
..+++|+.||.|+..+ -+...|...|.++|+ . ....+.+|+..+.
T Consensus 88 ~~~~iDLFsGiGGl~l----------Gfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRR----------GFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHH----------HHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCc
Confidence 4599999999995544 444456667888898 1 1345567887764
No 329
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=67.26 E-value=24 Score=29.84 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+|+=+|||.=+..+ +..+++.|..+++.+|.
T Consensus 20 ~~~~V~IvG~GglGs~i--------a~~La~~Gvg~i~lvD~ 53 (200)
T TIGR02354 20 EQATVAICGLGGLGSNV--------AINLARAGIGKLILVDF 53 (200)
T ss_pred hCCcEEEECcCHHHHHH--------HHHHHHcCCCEEEEECC
Confidence 34789999998654555 67778888778888888
No 330
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=67.24 E-value=17 Score=34.44 Aligned_cols=83 Identities=13% Similarity=0.015 Sum_probs=48.4
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceE--------EEEccccccCCCCceeEEEeccc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE--------VIQNKIENVELPEKVDIIVSEWM 117 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~--------~~~~d~~~~~~~~~fDlIv~~~~ 117 (252)
...+|++|+=+|||.=+... +..+...|+ +|+.+|..... +...++.+. -..+|+|+....
T Consensus 198 ~~l~GktVvViG~G~IG~~v--------a~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~~~e~--v~~aDVVI~atG 266 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGC--------AQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMTMEEA--VKEGDIFVTTTG 266 (413)
T ss_pred CCCCCCEEEEECCCHHHHHH--------HHHHHHCCC-EEEEEECChhhHHHHHhcCCEEccHHHH--HcCCCEEEECCC
Confidence 34689999999999743333 445555776 68888872111 111111111 045799986321
Q ss_pred ccccCChhhHHHHHHH-HhccccCCeEEEeec
Q psy9773 118 GFYLLHESMIDSVIFA-RDKFLKPEGVMYPYK 148 (252)
Q Consensus 118 ~~~l~~~~~~~~~l~~-l~~~LkpgG~lv~~~ 148 (252)
.. .++.. ..+.+++||+++...
T Consensus 267 --------~~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 267 --------NK-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred --------CH-HHHHHHHHhcCCCCcEEEEeC
Confidence 11 23443 368899999997654
No 331
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=65.39 E-value=15 Score=30.78 Aligned_cols=45 Identities=11% Similarity=0.132 Sum_probs=35.1
Q ss_pred CceeEEEecccccccCC---------hhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 107 EKVDIIVSEWMGFYLLH---------ESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~---------~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
+..|+|+.++.++-+.. ..++..++.++..+|+|...+++.....
T Consensus 49 g~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 49 GRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred CceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 56799999887755532 3478899999999999999999887653
No 332
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=64.99 E-value=39 Score=30.92 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------CceEEEEccccc-c-----CCC-
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------LILEVIQNKIEN-V-----ELP- 106 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~~i~~~~~d~~~-~-----~~~- 106 (252)
....+.+|+=+|||.=+ ++ +..+++ .|+.+|+++|. .....+.....+ . ...
T Consensus 165 ~~~~~~~V~V~GaGpIG-Ll--------a~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 165 AVRPGGTVVVVGAGPIG-LL--------AIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTG 235 (350)
T ss_pred CCCCCCEEEEECCCHHH-HH--------HHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhC
Confidence 34555599999999632 33 344444 78889999999 111222211111 0 111
Q ss_pred -CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 -EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 -~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+|+++=..- ....+..+.++++|||.+++....
T Consensus 236 g~g~D~vie~~G---------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 236 GRGADVVIEAVG---------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCCCEEEECCC---------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 35999975221 223667777999999999876543
No 333
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=64.09 E-value=54 Score=28.83 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=46.2
Q ss_pred CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHh-hcCCCcEEEeeC----------CceEEEEccccc-------cCC
Q psy9773 45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCT-KVHPLDHYAPQY----------LILEVIQNKIEN-------VEL 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~----------~~i~~~~~d~~~-------~~~ 105 (252)
....++.+||..|||. | .. ...++ ..|. +|++++. ..+..+...-.. ...
T Consensus 161 ~~~~~~~~vli~g~g~vG--~~--------~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 229 (338)
T cd08254 161 GEVKPGETVLVIGLGGLG--LN--------AVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGL 229 (338)
T ss_pred cCCCCCCEEEEECCcHHH--HH--------HHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhc
Confidence 4567788999988753 4 32 23333 3553 4777765 112222111111 111
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+.+|+++.... ....+..+.+.|+++|.++...
T Consensus 230 ~~~~D~vid~~g---------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 230 GGGFDVIFDFVG---------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred CCCceEEEECCC---------CHHHHHHHHHHhhcCCEEEEEC
Confidence 256898875211 1235666779999999998654
No 334
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=63.74 E-value=3.8 Score=32.14 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=34.0
Q ss_pred ceEEEEccccccC--CCCceeEEEecccccccCChhh-HHHHHHHHhccccCCeEEEeecc
Q psy9773 92 ILEVIQNKIENVE--LPEKVDIIVSEWMGFYLLHESM-IDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 92 ~i~~~~~d~~~~~--~~~~fDlIv~~~~~~~l~~~~~-~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.+++..+|+.+.- ....||+|+.+..+..- +... -..+|..+.++++|||.+...+.
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~-nPelWs~e~~~~l~~~~~~~~~l~Tys~ 91 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAK-NPELWSEELFKKLARLSKPGGTLATYSS 91 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTT-SGGGSSHHHHHHHHHHEEEEEEEEES--
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcC-CcccCCHHHHHHHHHHhCCCcEEEEeec
Confidence 4567788886642 23789999886532211 1111 14789999999999999976554
No 335
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=63.59 E-value=9.6 Score=36.70 Aligned_cols=37 Identities=11% Similarity=0.127 Sum_probs=27.8
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
...|+|++. ++... -..+...+.+.|+||..|.+++.
T Consensus 96 ~~ADvVviL-----lPDt~-q~~v~~~i~p~LK~Ga~L~fsHG 132 (487)
T PRK05225 96 PQADLVINL-----TPDKQ-HSDVVRAVQPLMKQGAALGYSHG 132 (487)
T ss_pred HhCCEEEEc-----CChHH-HHHHHHHHHhhCCCCCEEEecCC
Confidence 578999872 23332 44555888999999999999875
No 336
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=63.33 E-value=20 Score=38.42 Aligned_cols=89 Identities=12% Similarity=-0.030 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC-----------CceEEEEccccccCCC--CceeEEE
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY-----------LILEVIQNKIENVELP--EKVDIIV 113 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~-----------~~i~~~~~d~~~~~~~--~~fDlIv 113 (252)
..+..+||+|+|.= +..+...+. ..|+.+|. ..-.|+++|......- .++|.+.
T Consensus 821 ~~~~~~lDLGTGPE------------~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vt 888 (1289)
T PF06016_consen 821 TDPDHWLDLGTGPE------------CRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVT 888 (1289)
T ss_dssp CCC-CEEEET--TT-------------CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEE
T ss_pred cCcceEEEccCCcc------------ceeeeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEE
Confidence 35789999998887 333333333 47999999 4567899998766443 6799999
Q ss_pred ecccccc--cCChhhHHHHHHHHhccccCCeE--EEeec
Q psy9773 114 SEWMGFY--LLHESMIDSVIFARDKFLKPEGV--MYPYK 148 (252)
Q Consensus 114 ~~~~~~~--l~~~~~~~~~l~~l~~~LkpgG~--lv~~~ 148 (252)
|...+.. ....-++...|+.+.+.+++.|. +++.-
T Consensus 889 ailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQL 927 (1289)
T PF06016_consen 889 AILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQL 927 (1289)
T ss_dssp ECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE-
T ss_pred EEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEEe
Confidence 8444321 11222677888888888887664 44443
No 337
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=63.03 E-value=34 Score=34.17 Aligned_cols=34 Identities=15% Similarity=-0.038 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+|+=+|.|..+..+ ..-++..|..++.++|.
T Consensus 128 R~akVlVlG~Gg~~s~l--------v~sL~~sG~~~I~~vd~ 161 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKL--------VRSLIDSGFPRFHAIVT 161 (637)
T ss_pred hcccEEEEecCchHHHH--------HHHHHhcCCCcEEEEec
Confidence 56789999999965555 56667788888888866
No 338
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=61.74 E-value=18 Score=32.63 Aligned_cols=88 Identities=13% Similarity=0.001 Sum_probs=46.4
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC--CceEEEE-ccc----cccCCCCceeEEEecccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY--LILEVIQ-NKI----ENVELPEKVDIIVSEWMG 118 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~--~~i~~~~-~d~----~~~~~~~~fDlIv~~~~~ 118 (252)
..++.+||-+|||.=+... ...++. .|+.+|+++|. .+..+.. .+. ..+.....+|+|+-.. .
T Consensus 161 ~~~g~~VlV~G~G~vGl~~--------~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~-G 231 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYIT--------ALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECV-G 231 (341)
T ss_pred CCCCCEEEEECCCHHHHHH--------HHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECC-C
Confidence 4678999999986422221 222333 35567988887 1111100 011 0111112488887521 1
Q ss_pred cccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
. ......+....++|++||++++..
T Consensus 232 ~-----~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 232 G-----RGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred C-----CccHHHHHHHHHhCcCCcEEEEEe
Confidence 1 012345666678999999998654
No 339
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=61.57 E-value=64 Score=26.99 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhh-cCCCcEEEeeCCc----------e-EEEEcccccc------CC
Q psy9773 45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTK-VHPLDHYAPQYLI----------L-EVIQNKIENV------EL 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~~~----------i-~~~~~d~~~~------~~ 105 (252)
....++.+||-.|+|+ | .. ...+++ .| .++++++... . .++....... ..
T Consensus 130 ~~~~~~~~vli~g~~~~G--~~--------~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 198 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVG--LL--------AAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTG 198 (271)
T ss_pred cCCCCCCEEEEECCCHHH--HH--------HHHHHHHcC-CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhc
Confidence 4447889999999986 4 33 233333 55 5677776610 1 1111110000 01
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.+.+|+++.... .. ..+..+.+.|+++|.++....
T Consensus 199 ~~~~d~vi~~~~-----~~----~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 199 GGGADVVIDAVG-----GP----ETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred CCCCCEEEECCC-----CH----HHHHHHHHhcccCCEEEEEcc
Confidence 256899976221 11 234555678899999986543
No 340
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=61.22 E-value=15 Score=33.47 Aligned_cols=49 Identities=16% Similarity=0.053 Sum_probs=29.6
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEcccccc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENV 103 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~ 103 (252)
...++..++|.=-|.|+.+. +++- ..+..+++|+|. .++.++++++.++
T Consensus 17 ~~~~~g~~vD~T~G~GGHS~--------aiL~-~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 17 NPKPGGIYVDCTFGGGGHSK--------AILE-KLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp T--TT-EEEETT-TTSHHHH--------HHHH-T-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred CcCCCceEEeecCCcHHHHH--------HHHH-hCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 36778899999999997776 4333 333368999999 4566666665554
No 341
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=61.09 E-value=31 Score=28.03 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=24.3
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+|++++. +.. .+......|+|||++++....
T Consensus 56 ~~~Dilv~l----------~~~-~~~~~~~~l~~~g~vi~ns~~ 88 (173)
T PF01558_consen 56 GEADILVAL----------DPE-ALERHLKGLKPGGVVIINSSL 88 (173)
T ss_dssp SSESEEEES----------SHH-HHHHCGTTCETTEEEEEETTT
T ss_pred CCCCEEEEc----------CHH-HHHHHhcCcCcCeEEEEECCC
Confidence 789999882 222 333667889999999998753
No 342
>PRK07411 hypothetical protein; Validated
Probab=60.72 E-value=33 Score=32.09 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+||=+|||.-+... +..++..|..+++-+|.
T Consensus 37 ~~~~VlivG~GGlG~~v--------a~~La~~Gvg~l~lvD~ 70 (390)
T PRK07411 37 KAASVLCIGTGGLGSPL--------LLYLAAAGIGRIGIVDF 70 (390)
T ss_pred hcCcEEEECCCHHHHHH--------HHHHHHcCCCEEEEECC
Confidence 34689999999655555 67788888889999988
No 343
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=60.50 E-value=11 Score=31.26 Aligned_cols=73 Identities=14% Similarity=0.251 Sum_probs=43.0
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEEeeC-------------------CceEEEEccccccCC-----
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYAPQY-------------------LILEVIQNKIENVEL----- 105 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~gvD~-------------------~~i~~~~~d~~~~~~----- 105 (252)
..|+-||||-- +. ...+... +...++-+|. .+.+++.+|+.+...
T Consensus 80 ~qvV~LGaGlD--Tr--------~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~ 149 (183)
T PF04072_consen 80 RQVVNLGAGLD--TR--------AYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALP 149 (183)
T ss_dssp SEEEEET-TT----H--------HHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHH
T ss_pred cEEEEcCCCCC--ch--------HHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHH
Confidence 48999999988 66 5555543 2346777777 235678888875421
Q ss_pred -----CCceeEEEecccccccCChhhHHHHHHHH
Q psy9773 106 -----PEKVDIIVSEWMGFYLLHESMIDSVIFAR 134 (252)
Q Consensus 106 -----~~~fDlIv~~~~~~~l~~~~~~~~~l~~l 134 (252)
+...-++++..++.++... ....+|..+
T Consensus 150 ~~g~~~~~ptl~i~Egvl~Yl~~~-~~~~ll~~i 182 (183)
T PF04072_consen 150 KAGFDPDRPTLFIAEGVLMYLSPE-QVDALLRAI 182 (183)
T ss_dssp HCTT-TTSEEEEEEESSGGGS-HH-HHHHHHHHH
T ss_pred HhCCCCCCCeEEEEcchhhcCCHH-HHHHHHHHh
Confidence 1557788888877777333 455555543
No 344
>PRK06701 short chain dehydrogenase; Provisional
Probab=59.25 E-value=32 Score=30.28 Aligned_cols=95 Identities=17% Similarity=0.071 Sum_probs=51.9
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC---
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP--- 106 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~--- 106 (252)
...+++||-.|++.| +- -.++..+++.|+ +|+.++. .++.++.+|+.+...-
T Consensus 43 ~~~~k~iLItGasgg--IG-----~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 43 KLKGKVALITGGDSG--IG-----RAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred CCCCCEEEEeCCCcH--HH-----HHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 345688999998776 21 122444555664 4666543 2466788888665210
Q ss_pred --------CceeEEEeccccccc----C-------------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 --------EKVDIIVSEWMGFYL----L-------------HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 --------~~fDlIv~~~~~~~l----~-------------~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+.+|+||.+...... . +......++..+.+.++++|.+++...
T Consensus 115 ~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 115 VEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 467988864321111 0 011233445555566677777765543
No 345
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=59.19 E-value=25 Score=29.33 Aligned_cols=86 Identities=14% Similarity=0.032 Sum_probs=48.3
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------------------CceEEEEcccc
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------------------LILEVIQNKIE 101 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------------------~~i~~~~~d~~ 101 (252)
+|-=+|.|.=+..+ +..++..| .+|+|+|+ .+..+. .|..
T Consensus 2 ~I~ViGlGyvGl~~--------A~~lA~~G-~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~ 71 (185)
T PF03721_consen 2 KIAVIGLGYVGLPL--------AAALAEKG-HQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIE 71 (185)
T ss_dssp EEEEE--STTHHHH--------HHHHHHTT-SEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHH
T ss_pred EEEEECCCcchHHH--------HHHHHhCC-CEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhh
Confidence 45667888766666 78888887 57999999 111111 1111
Q ss_pred ccCCCCceeEEEeccc-cc---ccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 102 NVELPEKVDIIVSEWM-GF---YLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 102 ~~~~~~~fDlIv~~~~-~~---~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.. ....|+++..-- .. ...+...+..++..+.+.|+++.++++.+.
T Consensus 72 ~a--i~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST 121 (185)
T PF03721_consen 72 EA--IKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST 121 (185)
T ss_dssp HH--HHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred hh--hhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence 10 034677766111 11 111223577888999999999888887664
No 346
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=59.16 E-value=23 Score=28.41 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=49.3
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------------CceEEEEccccccCCCC
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------------LILEVIQNKIENVELPE 107 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------------~~i~~~~~d~~~~~~~~ 107 (252)
+|.=+|+|.++..+ +..++..| .+|+-... .++.+ ..|+...- .
T Consensus 1 KI~ViGaG~~G~Al--------A~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTAL--------AALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--E 68 (157)
T ss_dssp EEEEESSSHHHHHH--------HHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--T
T ss_pred CEEEECcCHHHHHH--------HHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--C
Confidence 36678999998888 78888776 45655544 11211 11221110 4
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecccc
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL 151 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~ 151 (252)
..|+|+... .......++..+...|+++-.+++....+
T Consensus 69 ~ad~Iiiav------Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 69 DADIIIIAV------PSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp T-SEEEE-S-------GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred cccEEEecc------cHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 678887622 12246789999999998888888766553
No 347
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=56.33 E-value=30 Score=29.12 Aligned_cols=35 Identities=14% Similarity=-0.015 Sum_probs=26.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+.+||=+|||.-+..+ +..++..|..+++.+|.
T Consensus 19 l~~~~VlviG~GglGs~i--------a~~La~~Gv~~i~lvD~ 53 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPA--------ALYLAGAGVGTIVIVDD 53 (202)
T ss_pred hcCCCEEEECCCHHHHHH--------HHHHHHcCCCeEEEecC
Confidence 345789999999644445 56777788888998887
No 348
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=56.28 E-value=27 Score=29.87 Aligned_cols=34 Identities=18% Similarity=-0.014 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+|+=+|||.-+..+ +..+++.|..+++.+|.
T Consensus 20 ~~~~VlivG~GglGs~v--------a~~La~~Gvg~i~lvD~ 53 (228)
T cd00757 20 KNARVLVVGAGGLGSPA--------AEYLAAAGVGKLGLVDD 53 (228)
T ss_pred hCCcEEEECCCHHHHHH--------HHHHHHcCCCEEEEEcC
Confidence 35789999998654455 67777888888998887
No 349
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.25 E-value=32 Score=31.26 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=49.7
Q ss_pred CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC-----------C---ceEEEEcccccc----C
Q psy9773 44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY-----------L---ILEVIQNKIENV----E 104 (252)
Q Consensus 44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~-----------~---~i~~~~~d~~~~----~ 104 (252)
.....+|.+||=.|+..|.-.+ +..+++ .|+ .++++-. . -+.+...|+.+- .
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~--------aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSA--------AIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELT 207 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHH--------HHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHc
Confidence 3567779999999987775466 566666 454 3443333 1 122222222111 1
Q ss_pred CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
....+|+|+...- ...+....+.|+++|+++.....
T Consensus 208 ~g~gvDvv~D~vG----------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 208 GGKGVDVVLDTVG----------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCCCceEEEECCC----------HHHHHHHHHHhccCCEEEEEecC
Confidence 1136999976221 12344556888999999876543
No 350
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=56.07 E-value=47 Score=31.67 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=48.7
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEE--------EccccccCCCCceeEEEecccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVI--------QNKIENVELPEKVDIIVSEWMG 118 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~--------~~d~~~~~~~~~fDlIv~~~~~ 118 (252)
...|++|+=+|+|.=+..+ +..+...|+ +|+.+|....... ..++... -..+|+||...
T Consensus 209 ~l~Gk~VlViG~G~IG~~v--------A~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~v~~l~ea--l~~aDVVI~aT-- 275 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGC--------AQRLRGLGA-RVIVTEVDPICALQAAMDGFRVMTMEEA--AELGDIFVTAT-- 275 (425)
T ss_pred CCCCCEEEEECCCHHHHHH--------HHHHHhCCC-EEEEEcCCchhhHHHHhcCCEecCHHHH--HhCCCEEEECC--
Confidence 3588999999998654444 455555675 6888887322111 1111111 14689997732
Q ss_pred cccCChhhHHHHHH-HHhccccCCeEEEeec
Q psy9773 119 FYLLHESMIDSVIF-ARDKFLKPEGVMYPYK 148 (252)
Q Consensus 119 ~~l~~~~~~~~~l~-~l~~~LkpgG~lv~~~ 148 (252)
.. ..++. .....+++|++++...
T Consensus 276 ------G~-~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 276 ------GN-KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ------CC-HHHHHHHHHhcCCCCCEEEEcC
Confidence 11 12343 4568889999987654
No 351
>KOG2015|consensus
Probab=55.15 E-value=34 Score=31.61 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=19.3
Q ss_pred CceEEEEccccccCCC--CceeEEEe
Q psy9773 91 LILEVIQNKIENVELP--EKVDIIVS 114 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~--~~fDlIv~ 114 (252)
..+.++.+++++.+.. ..||+|+|
T Consensus 110 ~~v~~h~~kIqd~~~~FYk~F~~iic 135 (422)
T KOG2015|consen 110 CVVVPHRQKIQDKPISFYKRFDLIIC 135 (422)
T ss_pred cEEeeeecchhcCCHHHHhhhceEEe
Confidence 3456778888888766 88999998
No 352
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=54.93 E-value=37 Score=30.95 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=43.6
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------------CceEEEEcccccc
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------------LILEVIQNKIENV 103 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------------~~i~~~~~d~~~~ 103 (252)
+.......++...+|.--|.|+..- ..+.+.+. .+++|+|. .++++++.++.++
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~---------~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l 85 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSR---------AILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANL 85 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHH---------HHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHH
Confidence 3333456778999999999996654 23333332 56999998 5788888877666
Q ss_pred CCC------CceeEEEe
Q psy9773 104 ELP------EKVDIIVS 114 (252)
Q Consensus 104 ~~~------~~fDlIv~ 114 (252)
... +.+|.|+.
T Consensus 86 ~~~l~~~~i~~vDGiL~ 102 (314)
T COG0275 86 AEALKELGIGKVDGILL 102 (314)
T ss_pred HHHHHhcCCCceeEEEE
Confidence 321 46677766
No 353
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=54.66 E-value=32 Score=29.99 Aligned_cols=34 Identities=15% Similarity=0.064 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+||=+|||.=+... +..++..|..+++.+|.
T Consensus 31 ~~~~VliiG~GglGs~v--------a~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 31 KAARVLVVGLGGLGCAA--------SQYLAAAGVGTLTLVDF 64 (245)
T ss_pred cCCeEEEECCCHHHHHH--------HHHHHHcCCCEEEEEcC
Confidence 45789999998533444 56677788888888887
No 354
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=54.48 E-value=28 Score=32.60 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+||=+|||.-+... +..++..|..+++.+|.
T Consensus 41 ~~~~VlviG~GGlGs~v--------a~~La~~Gvg~i~lvD~ 74 (392)
T PRK07878 41 KNARVLVIGAGGLGSPT--------LLYLAAAGVGTLGIVEF 74 (392)
T ss_pred hcCCEEEECCCHHHHHH--------HHHHHHcCCCeEEEECC
Confidence 45689999998655555 67778888888999988
No 355
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.32 E-value=43 Score=27.89 Aligned_cols=93 Identities=17% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC--------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL-------- 105 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~-------- 105 (252)
.+++||-.|++.| += -.+...+++.|+ +|++++. .++.++.+|+.+...
T Consensus 4 ~~~~vlItGa~g~--iG-----~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVSEG--LG-----YAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCCch--HH-----HHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 4678999998765 21 112344455664 5887765 246788888876421
Q ss_pred ---CCceeEEEecccccccC--------------ChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 ---PEKVDIIVSEWMGFYLL--------------HESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 ---~~~fDlIv~~~~~~~l~--------------~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
-+.+|.|+......... +......++..+.+.++++|.+++...
T Consensus 76 ~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 03468877644221100 001122335555666777887776543
No 356
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=53.59 E-value=41 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=22.3
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.+|++++.. ...+ .+....|+|||++++.+..
T Consensus 66 ~~~D~lva~d----------~~~~-~~~~~~l~~gg~ii~ns~~ 98 (197)
T PRK06274 66 GQADLLLALE----------PAEV-ARNLHFLKKGGKIIVNAYA 98 (197)
T ss_pred CCCCEEEEcC----------HHHH-HHHHhhcCCCcEEEEECCC
Confidence 6899998822 1222 2334678999999988643
No 357
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.28 E-value=53 Score=24.29 Aligned_cols=69 Identities=17% Similarity=0.032 Sum_probs=42.2
Q ss_pred hHHHhhcCCCcEEEeeC----------CceEEEEccccccCC----C-CceeEEEecccccccCChhhHHHHHHHHhccc
Q psy9773 74 HSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL----P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFL 138 (252)
Q Consensus 74 s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~----~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~L 138 (252)
...+... ..+++.+|. ..+.++.+|..+... . ..++.|++.. .+ ......+....+-+
T Consensus 14 ~~~L~~~-~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~-----~~-d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 14 AEQLKEG-GIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT-----DD-DEENLLIALLAREL 86 (116)
T ss_dssp HHHHHHT-TSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES-----SS-HHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc-----CC-HHHHHHHHHHHHHH
Confidence 3444443 347999998 568899999987732 2 6788887722 12 22333344445777
Q ss_pred cCCeEEEeecc
Q psy9773 139 KPEGVMYPYKC 149 (252)
Q Consensus 139 kpgG~lv~~~~ 149 (252)
.|...++....
T Consensus 87 ~~~~~ii~~~~ 97 (116)
T PF02254_consen 87 NPDIRIIARVN 97 (116)
T ss_dssp TTTSEEEEEES
T ss_pred CCCCeEEEEEC
Confidence 88888876654
No 358
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=52.84 E-value=18 Score=29.47 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccCCCCc
Q psy9773 40 AICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVELPEK 108 (252)
Q Consensus 40 ~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~~~~~ 108 (252)
.+.++.....|++||=+|.=.. .+ ...+... +.++.+... .++.+..+ ...+....
T Consensus 3 vllR~~~~f~~k~vL~~g~~~D--~~--------~~~L~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~f~--~~~~~~~~ 69 (155)
T PF08468_consen 3 VLLRNSDLFEGKSVLFAGDPQD--DL--------PAQLPAI-AVSVHVFSYHHWYALQKQAQSNVQFHFG--AELPADQD 69 (155)
T ss_dssp HHHTTHHHHTT-EEEEEE---S--SH--------HHHS--S-EEEEEESBHHHHHHHHHHHGGGEEE-SS----HHHHTT
T ss_pred hhhhhHHHHCCCeEEEEcCCch--hh--------HHHhhhc-CCEEEEEEchHHHHHhHhcccCceEeee--ccCCcccC
Confidence 3455555677888999985554 33 2222222 123433332 23333311 01111157
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
||.||..+ --......-.|..+...|++||.+++..-
T Consensus 70 ~D~vvly~----PKaK~e~~~lL~~l~~~L~~g~~i~vVGE 106 (155)
T PF08468_consen 70 FDTVVLYW----PKAKAEAQYLLANLLSHLPPGTEIFVVGE 106 (155)
T ss_dssp -SEEEEE------SSHHHHHHHHHHHHTTS-TT-EEEEEEE
T ss_pred CCEEEEEc----cCcHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 99997643 23445677788889999999999988653
No 359
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=52.65 E-value=82 Score=27.67 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=44.5
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEc--c------c-cccCC-CCceeEE
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQN--K------I-ENVEL-PEKVDII 112 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~--d------~-~~~~~-~~~fDlI 112 (252)
+|+=+|+|.-+..+ +..+++.| ..|+.++. ..+.+... + . .+... ...+|+|
T Consensus 2 kI~IiG~G~iG~~~--------a~~L~~~g-~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 2 RIAVVGAGAVGGTF--------GGRLLEAG-RDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred eEEEECCCHHHHHH--------HHHHHHCC-CceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 57888999876666 66666655 34666654 11222111 1 0 01111 1568988
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
+...- ......++..+...+.++..+++.
T Consensus 73 ilavk------~~~~~~~~~~l~~~~~~~~~ii~~ 101 (305)
T PRK12921 73 ILAVK------AYQLDAAIPDLKPLVGEDTVIIPL 101 (305)
T ss_pred EEEec------ccCHHHHHHHHHhhcCCCCEEEEe
Confidence 76221 124566777777777777766544
No 360
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.40 E-value=51 Score=30.33 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=29.7
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..||+|+..+- -+.......|..+.+.|+|||.+++...
T Consensus 75 ~~~d~~~~~~p----k~k~~~~~~l~~~~~~l~~g~~i~~~G~ 113 (342)
T PRK09489 75 ADCDTLIYYWP----KNKQEAQFQLMNLLSLLPVGTDIFVVGE 113 (342)
T ss_pred CCCCEEEEECC----CCHHHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 57999976442 2334677888899999999999998753
No 361
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=52.08 E-value=24 Score=31.84 Aligned_cols=31 Identities=13% Similarity=-0.044 Sum_probs=21.7
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+||=+|||.=+..+ ...++..|..+++.+|.
T Consensus 1 kVlVVGaGGlG~ei--------lknLal~Gvg~I~IvD~ 31 (291)
T cd01488 1 KILVIGAGGLGCEL--------LKNLALSGFRNIHVIDM 31 (291)
T ss_pred CEEEECCCHHHHHH--------HHHHHHcCCCeEEEECC
Confidence 47889997332333 45666778888998888
No 362
>PLN02494 adenosylhomocysteinase
Probab=51.70 E-value=37 Score=32.87 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=48.4
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEEcc---ccccCCC---CceeEEEecccccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNK---IENVELP---EKVDIIVSEWMGFY 120 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~~d---~~~~~~~---~~fDlIv~~~~~~~ 120 (252)
...|++|+=+|+|.=+..+ +..+...|+ +|+.++........+- +...+.. ...|+|++..-
T Consensus 251 ~LaGKtVvViGyG~IGr~v--------A~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~tTG--- 318 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGC--------AAAMKAAGA-RVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTTTG--- 318 (477)
T ss_pred ccCCCEEEEECCCHHHHHH--------HHHHHHCCC-EEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEECCC---
Confidence 4679999999998643344 455555676 6888877322211100 0000111 46899987221
Q ss_pred cCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 121 LLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 121 l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
....+.....+.|++||+|+...
T Consensus 319 -----t~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 319 -----NKDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred -----CccchHHHHHhcCCCCCEEEEcC
Confidence 11122345567889999998654
No 363
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=51.33 E-value=36 Score=31.42 Aligned_cols=34 Identities=12% Similarity=-0.114 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+.+||=+|||.-+... +..++..|..+++.+|.
T Consensus 27 ~~~~VlivG~GGlGs~~--------a~~La~~Gvg~i~lvD~ 60 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPA--------LLYLAGAGVGHITIIDD 60 (355)
T ss_pred hCCeEEEECCCHHHHHH--------HHHHHHcCCCeEEEEeC
Confidence 45789999998644444 57778888888999988
No 364
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=50.98 E-value=57 Score=30.90 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceE--------EEEccccccCCCCceeEEEecccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE--------VIQNKIENVELPEKVDIIVSEWMG 118 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~--------~~~~d~~~~~~~~~fDlIv~~~~~ 118 (252)
...|++|+=+|+|.=+..+ +..+...|+ +|+++|..... +...++.+. -...|+||+..-
T Consensus 192 ~l~Gk~VvViG~G~IG~~v--------A~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~v~~leea--l~~aDVVItaTG- 259 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGI--------AMRARGMGA-RVIVTEVDPIRALEAAMDGFRVMTMEEA--AKIGDIFITATG- 259 (406)
T ss_pred CCCcCEEEEECCCHHHHHH--------HHHHhhCcC-EEEEEeCChhhHHHHHhcCCEeCCHHHH--HhcCCEEEECCC-
Confidence 4689999999999754444 455555665 58888763221 111111111 045799877221
Q ss_pred cccCChhhHHHHHH-HHhccccCCeEEEeec
Q psy9773 119 FYLLHESMIDSVIF-ARDKFLKPEGVMYPYK 148 (252)
Q Consensus 119 ~~l~~~~~~~~~l~-~l~~~LkpgG~lv~~~ 148 (252)
. ..++. .....+++|++++...
T Consensus 260 -------~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 260 -------N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred -------C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 1 22333 3568889999998654
No 365
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=50.92 E-value=50 Score=30.07 Aligned_cols=31 Identities=19% Similarity=-0.060 Sum_probs=22.1
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+||=+|||.-+..+ ..-++..|..+++.+|.
T Consensus 1 kVlIVGaGGlG~Ei--------aKnLal~Gvg~ItIvD~ 31 (312)
T cd01489 1 KVLVVGAGGIGCEL--------LKNLVLTGFGEIHIIDL 31 (312)
T ss_pred CEEEECCCHHHHHH--------HHHHHHhcCCeEEEEcC
Confidence 47889998443333 45666778888888887
No 366
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=50.39 E-value=40 Score=29.89 Aligned_cols=82 Identities=16% Similarity=-0.135 Sum_probs=44.2
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeCC--ceEE----EEccccccCCCCceeEEEecccccc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQYL--ILEV----IQNKIENVELPEKVDIIVSEWMGFY 120 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~~--~i~~----~~~d~~~~~~~~~fDlIv~~~~~~~ 120 (252)
.++.+||=+|||.=+ .+ +..++ ..|+..++++|.. +... ...|.... ....+|+|+-...
T Consensus 143 ~~~~~vlV~G~G~vG-~~--------a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~-~~~g~Dvvid~~G--- 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLG-RL--------LARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKD-PRRDYRAIYDASG--- 209 (308)
T ss_pred cCCCcEEEECCCHHH-HH--------HHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhc-cCCCCCEEEECCC---
Confidence 357788888876311 33 33344 3676667777761 1111 11111110 1246898875221
Q ss_pred cCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 121 LLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 121 l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+ ...+..+.++|+++|++++..
T Consensus 210 --~----~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 --D----PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred --C----HHHHHHHHHhhhcCcEEEEEe
Confidence 1 124556668899999998654
No 367
>PRK08223 hypothetical protein; Validated
Probab=49.91 E-value=26 Score=31.56 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+||=+|||-=+... +..++..|..+++.+|.
T Consensus 26 ~~s~VlIvG~GGLGs~v--------a~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIH--------LLTLARLGIGKFTIADF 59 (287)
T ss_pred hcCCEEEECCCHHHHHH--------HHHHHHhCCCeEEEEeC
Confidence 45789999998533344 57788888888998888
No 368
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.73 E-value=74 Score=28.75 Aligned_cols=87 Identities=8% Similarity=-0.079 Sum_probs=46.2
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------Cce-EEEEcccccc-------CC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LIL-EVIQNKIENV-------EL 105 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i-~~~~~d~~~~-------~~ 105 (252)
....++.+||=.|||.=+ .+ ...+++ .|+.+|++++. ... .++...-.++ ..
T Consensus 172 ~~~~~g~~VlV~G~g~vG-~~--------a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~ 242 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVG-DA--------AIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTG 242 (358)
T ss_pred cCCCCCCEEEEECCCHHH-HH--------HHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhC
Confidence 456788999999874311 22 233333 56556888876 111 1221110111 11
Q ss_pred CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 ~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
...+|+|+-.. -. ...+....+.|++||++++...
T Consensus 243 ~~g~d~vid~~-----g~----~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 243 GFGADVVIDAV-----GR----PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCCCEEEECC-----CC----HHHHHHHHHHhccCCEEEEECC
Confidence 13589886521 11 1234455678899999987543
No 369
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=49.66 E-value=63 Score=29.43 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=45.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeCC----------ce-EEEEccccccC------CC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQYL----------IL-EVIQNKIENVE------LP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~~----------~i-~~~~~d~~~~~------~~ 106 (252)
....++.+||=.|+|.=+ .+ +..++ ..|+.+|++++.. .+ .++...-.++. .+
T Consensus 187 ~~i~~g~~VlV~G~G~vG-~~--------a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~ 257 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVG-LS--------ALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTG 257 (371)
T ss_pred cCCCCCCEEEEECCCHHH-HH--------HHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhC
Confidence 456788899989875311 22 23333 3666568888761 11 11211111110 01
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+.+|+|+-.. .. ...+....+.|+++|+++...
T Consensus 258 ~g~d~vid~~-----G~----~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 258 GGVDYAFEMA-----GS----VPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred CCCCEEEECC-----CC----hHHHHHHHHHHhcCCEEEEEc
Confidence 3589887521 11 123455567889999998654
No 370
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.53 E-value=29 Score=29.14 Aligned_cols=34 Identities=6% Similarity=-0.202 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+||=+|||.=+... +..++..|..+++.+|.
T Consensus 20 ~~s~VlIiG~gglG~ev--------ak~La~~GVg~i~lvD~ 53 (197)
T cd01492 20 RSARILLIGLKGLGAEI--------AKNLVLSGIGSLTILDD 53 (197)
T ss_pred HhCcEEEEcCCHHHHHH--------HHHHHHcCCCEEEEEEC
Confidence 34689999998654444 56677788888998887
No 371
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=49.35 E-value=55 Score=29.34 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC----------ceEEEEccccccCCC-CceeEEEe
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------ILEVIQNKIENVELP-EKVDIIVS 114 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------~i~~~~~d~~~~~~~-~~fDlIv~ 114 (252)
....+++|+=+|+|.=+..+ ...+...|+ +|+.+|.. ...+. ....+..- ..+|+||.
T Consensus 148 ~~l~g~kvlViG~G~iG~~~--------a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~ 216 (296)
T PRK08306 148 ITIHGSNVLVLGFGRTGMTL--------ARTLKALGA-NVTVGARKSAHLARITEMGLSPF--HLSELAEEVGKIDIIFN 216 (296)
T ss_pred CCCCCCEEEEECCcHHHHHH--------HHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee--cHHHHHHHhCCCCEEEE
Confidence 34468999999998654444 455556775 78888872 11111 11111111 57999987
Q ss_pred cccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
.. +. ..+-..+.+.++||++++-.
T Consensus 217 t~-----p~----~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 217 TI-----PA----LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred CC-----Ch----hhhhHHHHHcCCCCcEEEEE
Confidence 32 11 11223445678898877733
No 372
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=49.19 E-value=41 Score=29.28 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+.+||=+|||.=+... +..+++.|..+++.+|.
T Consensus 23 ~~~~VlvvG~GglGs~v--------a~~La~~Gvg~i~lvD~ 56 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAA--------SQYLAAAGVGNLTLLDF 56 (240)
T ss_pred hCCcEEEECcCHHHHHH--------HHHHHHcCCCEEEEEeC
Confidence 34789999998544444 57777888888998888
No 373
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.12 E-value=97 Score=27.13 Aligned_cols=82 Identities=11% Similarity=0.100 Sum_probs=46.8
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccc----cccCCC---CceeEEEe
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKI----ENVELP---EKVDIIVS 114 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~----~~~~~~---~~fDlIv~ 114 (252)
+|+=+|||.-+..+ +..+++.| ..|+.++. ..+.+..++. ...... ..+|+|+.
T Consensus 2 ~I~IiG~G~~G~~~--------a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vil 72 (304)
T PRK06522 2 KIAILGAGAIGGLF--------GAALAQAG-HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVIL 72 (304)
T ss_pred EEEEECCCHHHHHH--------HHHHHhCC-CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEE
Confidence 58889998876666 66666665 45777765 1111101110 001111 56899887
Q ss_pred cccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..- ..+...++..+...+.++..+++..
T Consensus 73 a~k------~~~~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 73 AVK------AYQLPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred ecc------cccHHHHHHHHhhhcCCCCEEEEec
Confidence 221 1246677888888888776666543
No 374
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=47.44 E-value=95 Score=27.81 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=46.0
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCCCCceeEEEe
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVELPEKVDIIVS 114 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~~~~fDlIv~ 114 (252)
....+|.+||=.|+|.-+... ...+...|+ +|++++. .....+ .+.... ..+.+|+++.
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a--------~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~v-i~~~~~-~~~~~d~~i~ 229 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLT--------AQVALAQGA-TVHVMTRGAAARRLALALGAASA-GGAYDT-PPEPLDAAIL 229 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHH--------HHHHHHCCC-eEEEEeCChHHHHHHHHhCCcee-cccccc-CcccceEEEE
Confidence 466789999999985332222 223333565 5887776 111111 111111 1245787654
Q ss_pred cccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 115 EWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 115 ~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
... . . ..+....+.|++||++++...
T Consensus 230 ~~~---~---~---~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 230 FAP---A---G---GLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred CCC---c---H---HHHHHHHHhhCCCcEEEEEec
Confidence 111 1 1 246666788999999987543
No 375
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=46.84 E-value=56 Score=25.46 Aligned_cols=31 Identities=19% Similarity=0.003 Sum_probs=22.2
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+||=+|||.=+..+ +..+++.|..+++.+|.
T Consensus 1 ~VliiG~GglGs~i--------a~~L~~~Gv~~i~ivD~ 31 (143)
T cd01483 1 RVLLVGLGGLGSEI--------ALNLARSGVGKITLIDF 31 (143)
T ss_pred CEEEECCCHHHHHH--------HHHHHHCCCCEEEEEcC
Confidence 47889998443444 56677778778888887
No 376
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=46.24 E-value=90 Score=24.24 Aligned_cols=38 Identities=8% Similarity=0.213 Sum_probs=28.2
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+|+|+... -..+...++..+.+.+.|+..+++..+.
T Consensus 66 ~~~D~viv~v------Ka~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 66 GPYDLVIVAV------KAYQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp STESEEEE-S------SGGGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred CCCcEEEEEe------cccchHHHHHHHhhccCCCcEEEEEeCC
Confidence 6799998722 1235678899999999999888776554
No 377
>PRK10867 signal recognition particle protein; Provisional
Probab=46.10 E-value=1.3e+02 Score=28.70 Aligned_cols=42 Identities=10% Similarity=0.178 Sum_probs=29.7
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..||+|+....+.. +....+..-+..+.++++|..++++...
T Consensus 182 ~~~DvVIIDTaGrl-~~d~~lm~eL~~i~~~v~p~evllVlda 223 (433)
T PRK10867 182 NGYDVVIVDTAGRL-HIDEELMDELKAIKAAVNPDEILLVVDA 223 (433)
T ss_pred cCCCEEEEeCCCCc-ccCHHHHHHHHHHHHhhCCCeEEEEEec
Confidence 46999999776543 2233566677778888899988777654
No 378
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=45.93 E-value=82 Score=27.39 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=44.2
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceE-EEEc-cc----cccCCCCcee
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILE-VIQN-KI----ENVELPEKVD 110 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~-~~~~-d~----~~~~~~~~fD 110 (252)
..++.+||=+|+|.=+ .+ ...++...|+.+|++++. .... ++.. +. ..+.....+|
T Consensus 118 ~~~g~~VlV~G~G~vG-~~-------~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLG-LT-------AAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCCEEEEECCCHHH-HH-------HHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCC
Confidence 4578899999875321 22 022333356655888875 1111 1110 00 0011113588
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+++-... . ...+..+.+.|+|+|+++...
T Consensus 190 ~vid~~G-----~----~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSG-----A----TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCC-----C----hHHHHHHHHHhcCCCEEEEec
Confidence 8865211 1 124555668889999998755
No 379
>KOG2013|consensus
Probab=45.69 E-value=28 Score=33.77 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=39.2
Q ss_pred CCCEEEEEcCC-cCchhhhhccCccchHHHhhcCCCcEEEeeC-------------------------------------
Q psy9773 49 AGKTVLDVGTG-TGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------------------------- 90 (252)
Q Consensus 49 ~~~~VLDlGcG-tG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------------------------- 90 (252)
.+.|||=|||| -|+-+| --++..|...+..||.
T Consensus 11 ~~~riLvVGaGGIGCELL---------KnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn 81 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELL---------KNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPN 81 (603)
T ss_pred ccCeEEEEecCcccHHHH---------HHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCC
Confidence 57899999996 564444 3445566777888877
Q ss_pred CceEEEEccccccCCC----CceeEEEe
Q psy9773 91 LILEVIQNKIENVELP----EKVDIIVS 114 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~~----~~fDlIv~ 114 (252)
..+...++++....+. ++||+|+.
T Consensus 82 ~~l~~yhanI~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 82 IKLVPYHANIKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred CceEeccccccCcchHHHHHHHHHHHHH
Confidence 3455667777777554 67888844
No 380
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=45.33 E-value=44 Score=31.97 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=62.2
Q ss_pred CCCCEEEEEcC-CcCchhhhhccCccchHHHhhcCCC-cEEEeeC---------------CceEEEEccccccCCC----
Q psy9773 48 FAGKTVLDVGT-GTGKSILLQGHGVDHHSFCTKVHPL-DHYAPQY---------------LILEVIQNKIENVELP---- 106 (252)
Q Consensus 48 ~~~~~VLDlGc-GtG~~~ll~~~~v~~s~~~a~~g~~-~v~gvD~---------------~~i~~~~~d~~~~~~~---- 106 (252)
.++..||=+|- |+|-++.-.++ +.++.+.+.+ -++++|. -++.|+..+-...|..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KL----A~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~ 173 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKL----AKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKA 173 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHH----HHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHH
Confidence 45678999994 88866651111 3344444432 3667777 4566665533333321
Q ss_pred -------CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 -------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 -------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..||+||...++.+- -+..+..=+..+...++|.=+|++...
T Consensus 174 al~~ak~~~~DvvIvDTAGRl~-ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 174 ALEKAKEEGYDVVIVDTAGRLH-IDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred HHHHHHHcCCCEEEEeCCCccc-ccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 569999998876443 344677777888999999999988764
No 381
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=45.27 E-value=47 Score=30.91 Aligned_cols=35 Identities=11% Similarity=-0.091 Sum_probs=27.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+.+||=+|||.-+... +..++..|..+++.+|.
T Consensus 39 l~~~~VliiG~GglG~~v--------~~~La~~Gvg~i~ivD~ 73 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPA--------MQSLASAGVGTITLIDD 73 (370)
T ss_pred hcCCcEEEECCCHHHHHH--------HHHHHHcCCCEEEEEeC
Confidence 445789999998654455 67777888888999988
No 382
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=45.00 E-value=39 Score=30.92 Aligned_cols=88 Identities=13% Similarity=-0.011 Sum_probs=53.8
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEE--------EccccccCCCCceeEEEecccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVI--------QNKIENVELPEKVDIIVSEWMG 118 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~--------~~d~~~~~~~~~fDlIv~~~~~ 118 (252)
...+++|.=||||+=+... ++-++..|..-++|+-....++. ..++.+.- ...|+|+.
T Consensus 15 ~LkgK~iaIIGYGsQG~ah--------alNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~--k~ADvim~---- 80 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQ--------ALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAA--KRADVVMI---- 80 (338)
T ss_pred HhcCCeEEEEecChHHHHH--------HhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHh--hcCCEEEE----
Confidence 3467899999999975555 55566666554555544222211 11111111 56899865
Q ss_pred cccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.+++.....-+-..+...|+.|-.|.|++.
T Consensus 81 -L~PDe~q~~vy~~~I~p~Lk~G~aL~FaHG 110 (338)
T COG0059 81 -LLPDEQQKEVYEKEIAPNLKEGAALGFAHG 110 (338)
T ss_pred -eCchhhHHHHHHHHhhhhhcCCceEEeccc
Confidence 134444444444489999999999999875
No 383
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=44.99 E-value=1.5e+02 Score=26.59 Aligned_cols=83 Identities=10% Similarity=-0.018 Sum_probs=45.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC-----------ceEEEE-ccccccC-------CCCceeE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL-----------ILEVIQ-NKIENVE-------LPEKVDI 111 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~-----------~i~~~~-~d~~~~~-------~~~~fDl 111 (252)
.+|+=+|||.=+..+ +..+++.|. .|+.++.. .+.+.. +....++ ..+.||+
T Consensus 3 m~I~IiGaGaiG~~~--------a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~ 73 (305)
T PRK05708 3 MTWHILGAGSLGSLW--------ACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHR 73 (305)
T ss_pred ceEEEECCCHHHHHH--------HHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCE
Confidence 468899998643455 555555553 46666551 122211 1111111 1157999
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
|+... -. .+...++..+..++.++..+++..
T Consensus 74 viv~v--K~----~~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 74 LLLAC--KA----YDAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred EEEEC--CH----HhHHHHHHHHHhhCCCCCEEEEEe
Confidence 87722 11 245677788888888888776543
No 384
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=44.27 E-value=1.3e+02 Score=24.50 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=21.8
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+|++++.. ...+ ......|+|||++++...
T Consensus 63 ~~~D~lval~----------~~~~-~~~~~~l~~~g~vi~n~~ 94 (170)
T PRK08338 63 TKADVLVALH----------QLGY-ETAKSSLKEDGLLIIDTD 94 (170)
T ss_pred CCCCEEEEcC----------HHHH-HHHhcccCCCeEEEEeCC
Confidence 6799998722 1222 334577899999998853
No 385
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=44.15 E-value=58 Score=29.92 Aligned_cols=35 Identities=17% Similarity=0.012 Sum_probs=26.3
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+.+||=+|||.=+..+ +..+++.|..+++.+|.
T Consensus 22 L~~~~VlIiG~GglGs~v--------a~~La~aGvg~i~lvD~ 56 (338)
T PRK12475 22 IREKHVLIVGAGALGAAN--------AEALVRAGIGKLTIADR 56 (338)
T ss_pred hcCCcEEEECCCHHHHHH--------HHHHHHcCCCEEEEEcC
Confidence 345789999999654555 67777788778888887
No 386
>TIGR03334 IOR_beta indolepyruvate ferredoxin oxidoreductase, beta subunit. This model represents the beta subunit of indolepyruvate ferredoxin oxidoreductase, an alpha(2)/beta(2) tetramer, as found in Pyrococcus furiosus and Methanobacterium thermoautotrophicum. Cofactors for the tetramer include TPP, 4Fe4S, and 3Fe-4S. It shows considerable sequence similarity to subunits of several other ketoacid oxidoreductases.
Probab=43.75 E-value=1.1e+02 Score=25.24 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=22.0
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
+.+|++++.. ...+.+. ...|+|||++++...
T Consensus 63 ~~~Dilvald----------~~~~~~~-~~~l~~~g~ii~n~~ 94 (189)
T TIGR03334 63 GGADLLLAFE----------PLEALRY-LPYLSEGGEVILNTS 94 (189)
T ss_pred CCCCEEEEeC----------HHHHHHH-HHhcCCCcEEEEeCC
Confidence 7899998822 2233333 467899999998754
No 387
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=43.36 E-value=71 Score=27.70 Aligned_cols=34 Identities=15% Similarity=-0.031 Sum_probs=25.6
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+.+||=+|||.=+... +..+++.|..+++-+|.
T Consensus 10 ~~~~VlVvG~GGvGs~v--------a~~Lar~GVg~i~LvD~ 43 (231)
T cd00755 10 RNAHVAVVGLGGVGSWA--------AEALARSGVGKLTLIDF 43 (231)
T ss_pred hCCCEEEECCCHHHHHH--------HHHHHHcCCCEEEEECC
Confidence 34689999998543444 57778888888999987
No 388
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=43.30 E-value=48 Score=29.54 Aligned_cols=87 Identities=14% Similarity=-0.003 Sum_probs=45.4
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC----------ce-EEEEccc------cccCCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------IL-EVIQNKI------ENVELPE 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------~i-~~~~~d~------~~~~~~~ 107 (252)
....++.+||=+|+|.=+... ..++...|+++|++++.. .+ .++...- ..+....
T Consensus 159 ~~~~~g~~vlV~G~G~vG~~~--------~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 159 VGVSGRDTVLVVGAGPVGLGA--------LMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGA 230 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHH--------HHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCC
Confidence 456678999999875321221 233344665558888761 11 1111110 0111113
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+|+|+-... . ...+....+.|+++|++++..
T Consensus 231 ~~d~vid~~g-----~----~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 231 GADVAIECSG-----N----TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCEEEECCC-----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 6899875221 1 123444557889999998654
No 389
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=42.92 E-value=84 Score=30.46 Aligned_cols=85 Identities=19% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEEc---cccccCCC---CceeEEEeccccc
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQN---KIENVELP---EKVDIIVSEWMGF 119 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~~---d~~~~~~~---~~fDlIv~~~~~~ 119 (252)
....|++|+=+|+|.=+-.+ +..+...|+ +|+.++......... .+...++. ...|+|++....
T Consensus 250 ~~LaGKtVgVIG~G~IGr~v--------A~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt- 319 (476)
T PTZ00075 250 VMIAGKTVVVCGYGDVGKGC--------AQALRGFGA-RVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGN- 319 (476)
T ss_pred CCcCCCEEEEECCCHHHHHH--------HHHHHHCCC-EEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCc-
Confidence 45688999999999733333 455555675 588886632211100 01111111 568999874311
Q ss_pred ccCChhhHHHHH-HHHhccccCCeEEEeec
Q psy9773 120 YLLHESMIDSVI-FARDKFLKPEGVMYPYK 148 (252)
Q Consensus 120 ~l~~~~~~~~~l-~~l~~~LkpgG~lv~~~ 148 (252)
..++ ......||||++|+-..
T Consensus 320 --------~~iI~~e~~~~MKpGAiLINvG 341 (476)
T PTZ00075 320 --------KDIITLEHMRRMKNNAIVGNIG 341 (476)
T ss_pred --------ccccCHHHHhccCCCcEEEEcC
Confidence 1123 24567889999998653
No 390
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=42.43 E-value=53 Score=28.73 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.8
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...++..|||.-+|+| +. ...+...| ...+|+++
T Consensus 219 ~s~~~diVlDpf~GsG--tt--------~~aa~~~~-r~~ig~e~ 252 (302)
T COG0863 219 YSFPGDIVLDPFAGSG--TT--------GIAAKNLG-RRFIGIEI 252 (302)
T ss_pred cCCCCCEEeecCCCCC--hH--------HHHHHHcC-CceEEEec
Confidence 6789999999999999 65 44444454 67888888
No 391
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=41.71 E-value=75 Score=28.64 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=44.4
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeC-------------CceEEEEcccccc-----CCCC
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQY-------------LILEVIQNKIENV-----ELPE 107 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~-------------~~i~~~~~d~~~~-----~~~~ 107 (252)
..++.+||=+|||.=+ .+ +..++ ..|+ +|++++. ..+.++ +..+. ...+
T Consensus 170 ~~~g~~vlI~G~G~vG-~~--------a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~ 237 (355)
T cd08230 170 TWNPRRALVLGAGPIG-LL--------AALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVG 237 (355)
T ss_pred cCCCCEEEEECCCHHH-HH--------HHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcC
Confidence 4578899999986321 22 33333 3565 5888763 112222 11111 1124
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+|+|+-... . ...+....+.|+++|++++..
T Consensus 238 ~~d~vid~~g-----~----~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 238 EFDLIIEATG-----V----PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred CCCEEEECcC-----C----HHHHHHHHHHccCCcEEEEEe
Confidence 6898876221 1 124566678899999997654
No 392
>PRK08265 short chain dehydrogenase; Provisional
Probab=41.04 E-value=1.1e+02 Score=26.20 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=37.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCC--------
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELP-------- 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~-------- 106 (252)
..++++|=.|++.| +- --++..+++.|+ +|+.++. .++.++++|+.+...-
T Consensus 4 ~~~k~vlItGas~g--IG-----~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (261)
T PRK08265 4 LAGKVAIVTGGATL--IG-----AAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVV 75 (261)
T ss_pred CCCCEEEEECCCCh--HH-----HHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHH
Confidence 35678999997665 21 111444555664 6777765 2467888898765210
Q ss_pred ---CceeEEEec
Q psy9773 107 ---EKVDIIVSE 115 (252)
Q Consensus 107 ---~~fDlIv~~ 115 (252)
+..|++|.+
T Consensus 76 ~~~g~id~lv~~ 87 (261)
T PRK08265 76 ARFGRVDILVNL 87 (261)
T ss_pred HHhCCCCEEEEC
Confidence 468988874
No 393
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=40.40 E-value=45 Score=29.76 Aligned_cols=46 Identities=7% Similarity=-0.027 Sum_probs=29.1
Q ss_pred HHHHHHhCCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 37 YRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 37 ~~~~l~~~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+...+........+++|+=+|||--+-.. ...++..|+++++.++.
T Consensus 114 ~~~~l~~~~~~~~~k~vlIlGaGGaarai--------a~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 114 FAESFRRGLPDASLERVVQLGAGGAGAAV--------AHALLTLGVERLTIFDV 159 (284)
T ss_pred HHHHHHhhccCccCCEEEEECCcHHHHHH--------HHHHHHcCCCEEEEECC
Confidence 33444322223466899999998653333 45566677777888877
No 394
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=40.18 E-value=1e+02 Score=26.82 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=21.1
Q ss_pred EEEEEcCC-cCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 52 TVLDVGTG-TGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 52 ~VLDlGcG-tG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+||=+||| .|+.. ...++..|..+++.+|.
T Consensus 1 kVlvvG~GGlG~ei---------lk~La~~Gvg~i~ivD~ 31 (234)
T cd01484 1 KVLLVGAGGIGCEL---------LKNLALMGFGQIHVIDM 31 (234)
T ss_pred CEEEECCCHHHHHH---------HHHHHHcCCCeEEEEeC
Confidence 47888987 44333 45566678888888888
No 395
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=39.84 E-value=18 Score=30.00 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.5
Q ss_pred hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 126 MIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 126 ~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
-+..++..+.|+|+|||.+++......
T Consensus 34 ~~~~~~~~~~rvLk~~g~~~i~~~~~~ 60 (231)
T PF01555_consen 34 WMEEWLKECYRVLKPGGSIFIFIDDRE 60 (231)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE-CCE
T ss_pred HHHHHHHHHHhhcCCCeeEEEEecchh
Confidence 467888999999999999998765533
No 396
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=39.71 E-value=25 Score=32.01 Aligned_cols=27 Identities=11% Similarity=0.112 Sum_probs=22.7
Q ss_pred hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 126 MIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 126 ~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.+..+|..+..+|+|||+|++.+.+..
T Consensus 218 ~L~~~L~~~~~~L~~gGrl~VISfHSL 244 (305)
T TIGR00006 218 ELEEALQFAPNLLAPGGRLSIISFHSL 244 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 578889999999999999998876533
No 397
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=39.71 E-value=1.1e+02 Score=22.13 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=10.9
Q ss_pred CCCCCCCEEEEEcCCcCc
Q psy9773 45 PNIFAGKTVLDVGTGTGK 62 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~ 62 (252)
.....+++||-+||.||.
T Consensus 34 ~~~~GpK~VLViGaStGy 51 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGY 51 (78)
T ss_dssp ---TS-SEEEEES-SSHH
T ss_pred CCCCCCceEEEEecCCcc
Confidence 344445899999999993
No 398
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=39.65 E-value=1.2e+02 Score=26.99 Aligned_cols=87 Identities=14% Similarity=0.072 Sum_probs=44.7
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC----------ce-EEEEccc---c---ccCCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------IL-EVIQNKI---E---NVELPE 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------~i-~~~~~d~---~---~~~~~~ 107 (252)
....++.+||=.|||+=+... ...+...|++.+++++.. .. .++..+- . ......
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~--------~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~ 227 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLA--------IQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLREL 227 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHH--------HHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCC
Confidence 456678899999875422222 233334666557777650 11 1111110 0 011113
Q ss_pred cee-EEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVD-IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fD-lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+| +|+- .+. . ...+....++|++||++++..
T Consensus 228 ~~d~~v~d-~~G----~----~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 228 RFDQLILE-TAG----V----PQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCeEEEE-CCC----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 577 5533 221 1 234566678889999998764
No 399
>KOG2918|consensus
Probab=39.47 E-value=1.3e+02 Score=27.68 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=29.5
Q ss_pred CceEEEEccccccCC-----------CCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 91 LILEVIQNKIENVEL-----------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~-----------~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++..++-+|++++.- .+-+-++++..++.++... .-..+++.+.+.. +.+.++...
T Consensus 160 ~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe-~S~~Li~w~~~~F-~~a~fv~YE 226 (335)
T KOG2918|consen 160 GRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPE-ESANLIKWAASKF-ENAHFVNYE 226 (335)
T ss_pred CceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHH-HHHHHHHHHHHhC-CcccEEEEe
Confidence 556666777765521 1345566666666666443 3445566554443 444444443
No 400
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=39.28 E-value=2.6e+02 Score=24.25 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhCCCCCCCCEEEEEcCCcCc--hhhhhccCccchHHHhh-cCCCcEEEeeC------------------C
Q psy9773 33 RNEAYRAAICDNPNIFAGKTVLDVGTGTGK--SILLQGHGVDHHSFCTK-VHPLDHYAPQY------------------L 91 (252)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~VLDlGcGtG~--~~ll~~~~v~~s~~~a~-~g~~~v~gvD~------------------~ 91 (252)
....|..+|. .=...+.+++..|+.|. +++ ++..|. +-..++++|-. +
T Consensus 28 ~~aEfISAlA---AG~nAkliVe~~s~g~~~~tti--------aLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~ 96 (218)
T PF07279_consen 28 GVAEFISALA---AGWNAKLIVEAWSSGGAISTTI--------ALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSD 96 (218)
T ss_pred CHHHHHHHHh---ccccceEEEEEecCCCchHhHH--------HHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccc
Confidence 3444555553 23344678888766442 344 444333 22246777755 3
Q ss_pred ceEEEEccccc-cCCC-CceeEEEecccccccCChhhHH-HHHHHHhccccCCeEEEeeccc
Q psy9773 92 ILEVIQNKIEN-VELP-EKVDIIVSEWMGFYLLHESMID-SVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 92 ~i~~~~~d~~~-~~~~-~~fDlIv~~~~~~~l~~~~~~~-~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+.|+.++... +... ...|+++.+.= . .+.. .+|+.+ + +.|.|.+++..+.
T Consensus 97 ~vEfvvg~~~e~~~~~~~~iDF~vVDc~---~---~d~~~~vl~~~-~-~~~~GaVVV~~Na 150 (218)
T PF07279_consen 97 VVEFVVGEAPEEVMPGLKGIDFVVVDCK---R---EDFAARVLRAA-K-LSPRGAVVVCYNA 150 (218)
T ss_pred cceEEecCCHHHHHhhccCCCEEEEeCC---c---hhHHHHHHHHh-c-cCCCceEEEEecc
Confidence 35777777533 3222 66888876331 2 3455 666664 3 5566666665443
No 401
>PRK06128 oxidoreductase; Provisional
Probab=39.02 E-value=1.5e+02 Score=26.04 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC----
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL---- 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~---- 105 (252)
..+++||=.|++.| +- --++..+++.|+ +|+.+.. ..+.++.+|+.+...
T Consensus 53 l~~k~vlITGas~g--IG-----~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 53 LQGRKALITGADSG--IG-----RATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred cCCCEEEEecCCCc--HH-----HHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 34688999997666 21 112344555664 4554322 245677888876421
Q ss_pred -------CCceeEEEecccccccC------Chh-----------hHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 -------PEKVDIIVSEWMGFYLL------HES-----------MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 -------~~~fDlIv~~~~~~~l~------~~~-----------~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
-+..|++|.+....... ... ....++..+.+.|+++|.++....
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 04689998744321110 011 122355556667777888776543
No 402
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=38.74 E-value=74 Score=29.07 Aligned_cols=86 Identities=13% Similarity=-0.018 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEEcccccc-CCC---CceeEEEecccccccCC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENV-ELP---EKVDIIVSEWMGFYLLH 123 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~~d~~~~-~~~---~~fDlIv~~~~~~~l~~ 123 (252)
..|++|.=||+|.=+..+ +..+...| .+|+++|...-.... ..... .+. ...|+|+... +.
T Consensus 144 l~g~~VgIIG~G~IG~~v--------A~~L~~~G-~~V~~~d~~~~~~~~-~~~~~~~l~ell~~aDiVil~l-----P~ 208 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAAT--------AKIYAGFG-ATITAYDAYPNKDLD-FLTYKDSVKEAIKDADIISLHV-----PA 208 (330)
T ss_pred cCCCEEEEECCCHHHHHH--------HHHHHhCC-CEEEEEeCChhHhhh-hhhccCCHHHHHhcCCEEEEeC-----CC
Confidence 467789999999854445 55555566 469999872111000 00000 111 5689887633 22
Q ss_pred hh-hHHHHHHHHhccccCCeEEEeec
Q psy9773 124 ES-MIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 124 ~~-~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+ ....+...+...++||.+|+-..
T Consensus 209 t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 209 NKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred cHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 22 23344556778889988776543
No 403
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=38.71 E-value=1.3e+02 Score=28.27 Aligned_cols=90 Identities=9% Similarity=0.017 Sum_probs=51.1
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccc----------c---CCCC
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIEN----------V---ELPE 107 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~----------~---~~~~ 107 (252)
.+|.=+|.|.-+..+ +..+++.| .+|+++|. ..+.+...++.. + ....
T Consensus 4 ~kI~VIGlG~~G~~~--------A~~La~~G-~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 4 ETISVIGLGYIGLPT--------AAAFASRQ-KQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred cEEEEECcchhhHHH--------HHHHHhCC-CEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccc
Confidence 468888999876677 77777777 57999998 111111111100 0 0013
Q ss_pred ceeEEEeccccc----ccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 108 KVDIIVSEWMGF----YLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 108 ~fDlIv~~~~~~----~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..|+|+...-.. .-.+......++..+.+.|++|.+++..+.
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 568887622110 001123556667778888888877766543
No 404
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=38.70 E-value=21 Score=32.16 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=31.2
Q ss_pred CceEEEEccccccCC-----CCceeEEEecc-cccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 LILEVIQNKIENVEL-----PEKVDIIVSEW-MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~-----~~~fDlIv~~~-~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
-.|.|+..+...... .+.||+|+... +.+.+ .+ .+.++++|+|+|++....
T Consensus 200 vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L----~p-----~l~~~~a~~A~LvvEtaK 256 (289)
T PF14740_consen 200 VKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFL----KP-----ELFQALAPDAVLVVETAK 256 (289)
T ss_pred cEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhc----ch-----HHHHHhCCCCEEEEEcch
Confidence 345666655533321 17899998733 22222 11 256788999999999864
No 405
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=38.50 E-value=51 Score=27.08 Aligned_cols=31 Identities=13% Similarity=-0.004 Sum_probs=22.2
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+|+=+|||.=+..+ +..+++.|..+++.+|.
T Consensus 1 ~VlViG~GglGs~i--------a~~La~~Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNI--------AVLLARSGVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHH--------HHHHHHcCCCeEEEEeC
Confidence 47889998533344 56677778778888888
No 406
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=38.28 E-value=97 Score=26.31 Aligned_cols=34 Identities=12% Similarity=-0.064 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+|+=+|||.=+..+ +..+++.|..+++.+|.
T Consensus 27 ~~~~V~ViG~GglGs~i--------a~~La~~Gvg~i~lvD~ 60 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNI--------AVALARSGVGNLKLVDF 60 (212)
T ss_pred hCCCEEEECcCHHHHHH--------HHHHHHcCCCeEEEEeC
Confidence 45689999998533344 56677788888888888
No 407
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=38.24 E-value=43 Score=26.14 Aligned_cols=63 Identities=16% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCCC-CceeEEE
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVELP-EKVDIIV 113 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~~-~~fDlIv 113 (252)
...+++||=+|+|--+-.. ...+...|+++++-+.- ....+....+.++... ..+|+||
T Consensus 9 ~l~~~~vlviGaGg~ar~v--------~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI 80 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAV--------AAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVI 80 (135)
T ss_dssp TGTTSEEEEESSSHHHHHH--------HHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEE
T ss_pred CcCCCEEEEECCHHHHHHH--------HHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEE
Confidence 5678999999997543333 45566678777887766 1112223333344311 5799999
Q ss_pred eccc
Q psy9773 114 SEWM 117 (252)
Q Consensus 114 ~~~~ 117 (252)
+...
T Consensus 81 ~aT~ 84 (135)
T PF01488_consen 81 NATP 84 (135)
T ss_dssp E-SS
T ss_pred EecC
Confidence 8544
No 408
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=38.03 E-value=45 Score=28.95 Aligned_cols=14 Identities=29% Similarity=0.724 Sum_probs=10.9
Q ss_pred CCEEEEEcCCcCchhh
Q psy9773 50 GKTVLDVGTGTGKSIL 65 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~l 65 (252)
..+|+++|+|+| ++
T Consensus 19 ~~~ivE~GaG~G--~L 32 (252)
T PF02636_consen 19 PLRIVEIGAGRG--TL 32 (252)
T ss_dssp -EEEEEES-TTS--HH
T ss_pred CcEEEEECCCch--HH
Confidence 479999999999 66
No 409
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=37.79 E-value=1.4e+02 Score=24.47 Aligned_cols=32 Identities=13% Similarity=0.030 Sum_probs=20.9
Q ss_pred CceeEEEecccccccCChhhHHHHHH-HHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIF-ARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~-~l~~~LkpgG~lv~~~ 148 (252)
..+|++++... ..+.. +..+.|+|||.+++..
T Consensus 65 ~~~D~lva~~~----------~~~~~~~~~~~l~~gg~vi~ns 97 (181)
T PRK08534 65 YEPDYVIVQDP----------TLLDSVDVTSGLKKDGIIIINT 97 (181)
T ss_pred CCCCEEEEcCH----------HHhcchhHhcCcCCCcEEEEEC
Confidence 67899988221 11111 2356789999999875
No 410
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=37.73 E-value=1.5e+02 Score=26.52 Aligned_cols=37 Identities=5% Similarity=-0.037 Sum_probs=24.0
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+|+|+... -. .+...++..+..+++|++.+++..+
T Consensus 71 ~~~D~vilav--K~----~~~~~~~~~l~~~~~~~~~iv~lqN 107 (313)
T PRK06249 71 PPCDWVLVGL--KT----TANALLAPLIPQVAAPDAKVLLLQN 107 (313)
T ss_pred CCCCEEEEEe--cC----CChHhHHHHHhhhcCCCCEEEEecC
Confidence 5789997722 11 1345677777788888888765543
No 411
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=37.33 E-value=97 Score=27.42 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=35.0
Q ss_pred ceEEEEccccccCCC--C---ceeEEEecccccccCChhh-HHHHHHHHhccccCCeEEEeec
Q psy9773 92 ILEVIQNKIENVELP--E---KVDIIVSEWMGFYLLHESM-IDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 92 ~i~~~~~d~~~~~~~--~---~fDlIv~~~~~~~l~~~~~-~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
...+..+|+.....+ . .+|+.+........ +... -..+|..+.+..+|||.+.-.+
T Consensus 147 ~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~k-NP~mW~~e~l~~~a~~~~~~~~l~t~s 208 (252)
T COG4121 147 LLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVK-NPEMWEDELLNLMARIPYRDPTLATFA 208 (252)
T ss_pred eeeeeeeehhhcCCcccccccCccEEecCCccccC-ChhhccHHHHHHHHhhcCCCCceechH
Confidence 455677777666433 3 68888774432221 1111 1367888899999999997544
No 412
>PRK06398 aldose dehydrogenase; Validated
Probab=37.06 E-value=1.4e+02 Score=25.39 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=39.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----CceEEEEccccccCC-----------CCceeE
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----LILEVIQNKIENVEL-----------PEKVDI 111 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----~~i~~~~~d~~~~~~-----------~~~fDl 111 (252)
..++++|=.|++.| +- --++..++..|. +|+.++. .++.++.+|+.+... -+.+|+
T Consensus 4 l~gk~vlItGas~g--IG-----~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~ 75 (258)
T PRK06398 4 LKDKVAIVTGGSQG--IG-----KAVVNRLKEEGS-NVINFDIKEPSYNDVDYFKVDVSNKEQVIKGIDYVISKYGRIDI 75 (258)
T ss_pred CCCCEEEEECCCch--HH-----HHHHHHHHHCCC-eEEEEeCCccccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45789999998776 21 111445556664 5887776 357788889876521 046899
Q ss_pred EEecc
Q psy9773 112 IVSEW 116 (252)
Q Consensus 112 Iv~~~ 116 (252)
+|.+.
T Consensus 76 li~~A 80 (258)
T PRK06398 76 LVNNA 80 (258)
T ss_pred EEECC
Confidence 98743
No 413
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.04 E-value=29 Score=31.58 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=22.9
Q ss_pred hhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 125 SMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 125 ~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+..+|..+.++|+|||+|++.+.+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFH 246 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEec
Confidence 47889999999999999999987765
No 414
>PRK06853 indolepyruvate oxidoreductase subunit beta; Reviewed
Probab=36.87 E-value=1.2e+02 Score=25.18 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=22.1
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
+.+|++++.. ...+. .....|+|||++++....
T Consensus 67 ~~~D~lva~d----------~~~~~-~~~~~lk~gg~ii~n~~~ 99 (197)
T PRK06853 67 GKADLLLAFE----------PLEAL-RYLPYLKKGGKVVVNTQP 99 (197)
T ss_pred CCCCEEEEeC----------HHHHH-HHHHhcCCCcEEEEECCC
Confidence 3799998822 12222 344678999999988643
No 415
>PRK08324 short chain dehydrogenase; Validated
Probab=36.82 E-value=1e+02 Score=30.96 Aligned_cols=61 Identities=20% Similarity=0.076 Sum_probs=38.5
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------C--ceEEEEccccccCC-------
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------L--ILEVIQNKIENVEL------- 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~--~i~~~~~d~~~~~~------- 105 (252)
..+++||=.|++.| +- -.++..++..|+ +|+.++. . ++.++.+|+.+...
T Consensus 420 l~gk~vLVTGasgg--IG-----~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 420 LAGKVALVTGAAGG--IG-----KATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCCEEEEecCCCH--HH-----HHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHH
Confidence 35789999997555 21 111344555675 6888886 1 56788888865421
Q ss_pred ----CCceeEEEecc
Q psy9773 106 ----PEKVDIIVSEW 116 (252)
Q Consensus 106 ----~~~fDlIv~~~ 116 (252)
-+.+|+||.+.
T Consensus 492 ~~~~~g~iDvvI~~A 506 (681)
T PRK08324 492 AALAFGGVDIVVSNA 506 (681)
T ss_pred HHHHcCCCCEEEECC
Confidence 04689998743
No 416
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=36.73 E-value=36 Score=31.58 Aligned_cols=33 Identities=9% Similarity=-0.011 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
++.+|+=+|+|.=+... ...+...|+ +|+.+|.
T Consensus 166 ~~~~VlViGaG~vG~~a--------a~~a~~lGa-~V~v~d~ 198 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNA--------AKMANGLGA-TVTILDI 198 (370)
T ss_pred CCceEEEEcCCHHHHHH--------HHHHHHCCC-eEEEEEC
Confidence 45779999988432222 333445675 5888887
No 417
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=36.62 E-value=1.6e+02 Score=28.42 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=13.1
Q ss_pred CCCEEEEEcCCcCchh
Q psy9773 49 AGKTVLDVGTGTGKSI 64 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ 64 (252)
++..|.|..||+|+.+
T Consensus 217 p~~~~~Dp~~Gsg~~L 232 (501)
T TIGR00497 217 TVDDVYDMACGSGSLL 232 (501)
T ss_pred CCCcccccccchHHHH
Confidence 5679999999999443
No 418
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=36.12 E-value=1.6e+02 Score=28.36 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=52.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccc---------cCC----C
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIEN---------VEL----P 106 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~---------~~~----~ 106 (252)
.+|.=+|+|..+..+ +..++..|. .+|+++|+ ....+....+.. +.+ .
T Consensus 2 m~I~ViG~GyvGl~~--------A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~ 73 (473)
T PLN02353 2 VKICCIGAGYVGGPT--------MAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVE 73 (473)
T ss_pred CEEEEECCCHHHHHH--------HHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHH
Confidence 367888999988777 788887753 46999998 111111111110 100 1
Q ss_pred ---CceeEEEec-cccc--------ccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 ---EKVDIIVSE-WMGF--------YLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ---~~fDlIv~~-~~~~--------~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
...|+|+.. .+.. .-++...+..+.+.+.+.|++|-++++.+.
T Consensus 74 ~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST 128 (473)
T PLN02353 74 KHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST 128 (473)
T ss_pred HHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence 346777551 1111 012333567788888899988777666543
No 419
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=36.06 E-value=1.2e+02 Score=28.86 Aligned_cols=91 Identities=11% Similarity=0.017 Sum_probs=54.1
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEcccc-------------ccCCC-
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIE-------------NVELP- 106 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~-------------~~~~~- 106 (252)
.+|-=+|-|.=+..+ +..++++|. +|+|+|+ .......-+.. ....+
T Consensus 10 ~~I~ViGLGYVGLPl--------A~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~ 80 (436)
T COG0677 10 ATIGVIGLGYVGLPL--------AAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE 80 (436)
T ss_pred eEEEEEccccccHHH--------HHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh
Confidence 678888888766666 788888884 6999999 12222211211 11111
Q ss_pred --CceeEEEe-cccccccCChh---hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 --EKVDIIVS-EWMGFYLLHES---MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 --~~fDlIv~-~~~~~~l~~~~---~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
...|+++. -+...--.+.+ ......+.+.+.|++|-.+++.+..
T Consensus 81 ~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~ 130 (436)
T COG0677 81 ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTT 130 (436)
T ss_pred hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 24565544 22211111333 4556677788999999999988754
No 420
>PRK12937 short chain dehydrogenase; Provisional
Probab=35.94 E-value=1.9e+02 Score=24.02 Aligned_cols=93 Identities=12% Similarity=0.004 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCC------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVEL------ 105 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~------ 105 (252)
.+++||=.|++.| +- -.++..+++.|. +++.+.. .++.++.+|+.+...
T Consensus 4 ~~~~vlItG~~~~--iG-----~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 4 SNKVAIVTGASRG--IG-----AAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCCEEEEeCCCch--HH-----HHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 4678899998665 21 122344555564 3444321 346778888876421
Q ss_pred -----CCceeEEEeccccccc---C--Chh-----------hHHHHHHHHhccccCCeEEEeecc
Q psy9773 106 -----PEKVDIIVSEWMGFYL---L--HES-----------MIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 106 -----~~~fDlIv~~~~~~~l---~--~~~-----------~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
.+..|+++........ . ... ....++..+.+.++++|.++....
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 76 AAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 0467888874321110 0 011 122334455566677787776654
No 421
>PRK07806 short chain dehydrogenase; Provisional
Probab=35.86 E-value=1.7e+02 Score=24.48 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------------CceEEEEccccccCCC----
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------------LILEVIQNKIENVELP---- 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------------~~i~~~~~d~~~~~~~---- 106 (252)
..++++|-.|++.| +- --+...++..|. +|+++.. .++.++.+|+.+...-
T Consensus 4 ~~~k~vlItGasgg--iG-----~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (248)
T PRK07806 4 LPGKTALVTGSSRG--IG-----ADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALM 75 (248)
T ss_pred CCCcEEEEECCCCc--HH-----HHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 35678999997555 21 011233444553 5666543 1356778888765210
Q ss_pred -------CceeEEEeccccccc----------CChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 -------EKVDIIVSEWMGFYL----------LHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 -------~~fDlIv~~~~~~~l----------~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+.+|++|.+...... .+......+++.+.+.++.+|.+++..
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 76 DTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 357887763321110 011124466677777766666666543
No 422
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=35.75 E-value=86 Score=29.03 Aligned_cols=35 Identities=14% Similarity=-0.044 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+.+||=+|||.-+..+ +..+++.|..+++.+|.
T Consensus 133 l~~~~VlvvG~GG~Gs~i--------a~~La~~Gvg~i~lvD~ 167 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPA--------ALYLAAAGVGTLGIVDH 167 (376)
T ss_pred HhcCcEEEECCCHHHHHH--------HHHHHHcCCCeEEEEeC
Confidence 356789999998543444 56777888888888887
No 423
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=35.64 E-value=2.5e+02 Score=24.66 Aligned_cols=86 Identities=13% Similarity=-0.012 Sum_probs=45.6
Q ss_pred CCCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------Cce-EEEEcc----cccc---C
Q psy9773 44 NPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LIL-EVIQNK----IENV---E 104 (252)
Q Consensus 44 ~~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i-~~~~~d----~~~~---~ 104 (252)
.....+|.+||=.|++.|--.+ ...+++ .|+ +|++++. ..+ .++..+ .... .
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~--------aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~ 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSV--------VGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHH--------HHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh
Confidence 3567789999999864331133 333444 564 5777665 111 112111 1110 0
Q ss_pred CCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 105 LPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 105 ~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+.+|+|+-.. .. ..+..+.+.|+++|+++...
T Consensus 204 ~~~gvdvv~d~~--------G~--~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 204 SPDGYDCYFDNV--------GG--EFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CCCCeEEEEECC--------CH--HHHHHHHHHhCcCcEEEEec
Confidence 114589886511 11 12355668899999998654
No 424
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=35.46 E-value=15 Score=27.70 Aligned_cols=9 Identities=44% Similarity=1.047 Sum_probs=8.0
Q ss_pred EEEEcCCcC
Q psy9773 53 VLDVGTGTG 61 (252)
Q Consensus 53 VLDlGcGtG 61 (252)
=+|||||.|
T Consensus 6 NIDIGcG~G 14 (124)
T PF07101_consen 6 NIDIGCGAG 14 (124)
T ss_pred ccccccCCC
Confidence 479999999
No 425
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=35.40 E-value=32 Score=31.14 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.9
Q ss_pred hHHHHHHHHhccccCCeEEEeeccccc
Q psy9773 126 MIDSVIFARDKFLKPEGVMYPYKCILH 152 (252)
Q Consensus 126 ~~~~~l~~l~~~LkpgG~lv~~~~~~~ 152 (252)
.+..+|..+..+|+|||++++.+.+..
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSl 240 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSL 240 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcH
Confidence 578889999999999999998876533
No 426
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=34.67 E-value=1.4e+02 Score=26.45 Aligned_cols=81 Identities=17% Similarity=0.227 Sum_probs=43.4
Q ss_pred CCCEEEEEcCCc-CchhhhhccCccchH-HHhhcCCCcEEEeeCC----------ce-EEEEcc---ccccCCC-CceeE
Q psy9773 49 AGKTVLDVGTGT-GKSILLQGHGVDHHS-FCTKVHPLDHYAPQYL----------IL-EVIQNK---IENVELP-EKVDI 111 (252)
Q Consensus 49 ~~~~VLDlGcGt-G~~~ll~~~~v~~s~-~~a~~g~~~v~gvD~~----------~i-~~~~~d---~~~~~~~-~~fDl 111 (252)
++.+||-.|||. | .. .. .+...|..++++++.. .+ .++..+ +..+... +.+|+
T Consensus 165 ~~~~VLI~g~g~vG--~~--------~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIG--AL--------VVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHH--HH--------HHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccE
Confidence 788999988764 3 22 22 3333565457777651 11 122111 1111111 45899
Q ss_pred EEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 112 IVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 112 Iv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
++.... . ...+..+.+.|+++|+++...
T Consensus 235 vld~~g-----~----~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 235 VFEASG-----A----PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred EEECCC-----C----HHHHHHHHHHHhcCCEEEEEe
Confidence 876221 0 123556678889999998643
No 427
>KOG1209|consensus
Probab=34.39 E-value=2.4e+02 Score=24.80 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-----------CceEEEEccccccC-----------CC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-----------LILEVIQNKIENVE-----------LP 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-----------~~i~~~~~d~~~~~-----------~~ 106 (252)
..+.||-.||..|++-. -++..+++.|+ .|+++-- .++.....|+.+.. ++
T Consensus 6 ~~k~VlItgcs~GGIG~------ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGY------ALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCCeEEEeecCCcchhH------HHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCC
Confidence 45789999999995432 11445566664 5777755 44556666665442 12
Q ss_pred -CceeEEEe
Q psy9773 107 -EKVDIIVS 114 (252)
Q Consensus 107 -~~fDlIv~ 114 (252)
++.|+++.
T Consensus 79 ~Gkld~L~N 87 (289)
T KOG1209|consen 79 DGKLDLLYN 87 (289)
T ss_pred CCceEEEEc
Confidence 67888876
No 428
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=34.37 E-value=2.1e+02 Score=24.45 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=30.2
Q ss_pred hHHHhhcCCCcEEEeeC--------CceEEEEccccccCC--C--CceeEEEecc
Q psy9773 74 HSFCTKVHPLDHYAPQY--------LILEVIQNKIENVEL--P--EKVDIIVSEW 116 (252)
Q Consensus 74 s~~~a~~g~~~v~gvD~--------~~i~~~~~d~~~~~~--~--~~fDlIv~~~ 116 (252)
...+.++| ..|+++=- ..++.++.|+.++.. . ..||+||+..
T Consensus 17 ~~EA~~RG-HeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~ 70 (211)
T COG2910 17 LKEALKRG-HEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAF 70 (211)
T ss_pred HHHHHhCC-CeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEec
Confidence 44555566 56888755 567788999988865 3 6799999944
No 429
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=33.63 E-value=87 Score=28.67 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=13.5
Q ss_pred CCCCCEEEEEcCCcCchh
Q psy9773 47 IFAGKTVLDVGTGTGKSI 64 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ 64 (252)
...+++||-+|+.+|.-+
T Consensus 38 ~ngPKkVLviGaSsGyGL 55 (398)
T COG3007 38 KNGPKKVLVIGASSGYGL 55 (398)
T ss_pred cCCCceEEEEecCCcccH
Confidence 345689999999888433
No 430
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=33.48 E-value=1.9e+02 Score=26.15 Aligned_cols=83 Identities=16% Similarity=0.104 Sum_probs=47.3
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEccc----ccc--C--C-CCceeEE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQNKI----ENV--E--L-PEKVDII 112 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~d~----~~~--~--~-~~~fDlI 112 (252)
.+|+=+|||.=+..+ +..+++.| ..|+.+-- ..+.+....- ... . . ...+|+|
T Consensus 1 mkI~IlGaGAvG~l~--------g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLL--------GARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHH--------HHHHHhCC-CeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEE
Confidence 368889998654555 56666666 44444433 2233322222 000 0 0 1579999
Q ss_pred EecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 113 v~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+... -..+...++..+.+.++|...+++..
T Consensus 72 iv~v------Ka~q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 72 IVTV------KAYQLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred EEEe------ccccHHHHHHHhhhcCCCCcEEEEEe
Confidence 8722 12256778888888888887666544
No 431
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=33.07 E-value=1.6e+02 Score=22.86 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=35.7
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC--------
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL-------- 105 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~-------- 105 (252)
++|=.|+++| + |..++..+++.|...|+.+.. .++.++++|+.+...
T Consensus 2 ~~lItGa~~g--i-----G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGASSG--I-----GRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTTSH--H-----HHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCCCH--H-----HHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 5677787766 2 122244455555555665543 467888888876521
Q ss_pred ---CCceeEEEecc
Q psy9773 106 ---PEKVDIIVSEW 116 (252)
Q Consensus 106 ---~~~fDlIv~~~ 116 (252)
.++.|++|++.
T Consensus 75 ~~~~~~ld~li~~a 88 (167)
T PF00106_consen 75 IKRFGPLDILINNA 88 (167)
T ss_dssp HHHHSSESEEEEEC
T ss_pred cccccccccccccc
Confidence 16899999843
No 432
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=33.02 E-value=1.9e+02 Score=25.93 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=46.3
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEc----------cc--c-ccCCCCc
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQN----------KI--E-NVELPEK 108 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~----------d~--~-~~~~~~~ 108 (252)
.+|.=+|+|.-+..+ +..+++.| .+|+.++. ..+.+... .+ . .......
T Consensus 3 mkI~IiG~G~mG~~~--------A~~L~~~G-~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 3 ARICVLGAGSIGCYL--------GGRLAAAG-ADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred ceEEEECCCHHHHHH--------HHHHHhcC-CcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence 368888999766666 66666666 46887776 11111100 00 0 0111146
Q ss_pred eeEEEecccccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 109 VDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 109 fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
+|+|+...- ......++..+...++++.+++..
T Consensus 74 ~D~vil~vk------~~~~~~~~~~l~~~~~~~~iii~~ 106 (341)
T PRK08229 74 ADLVLVTVK------SAATADAAAALAGHARPGAVVVSF 106 (341)
T ss_pred CCEEEEEec------CcchHHHHHHHHhhCCCCCEEEEe
Confidence 898877221 123456777777778887766543
No 433
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=32.39 E-value=26 Score=31.96 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.2
Q ss_pred hHHHHHHHHhccccCCeEEEeeccc
Q psy9773 126 MIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 126 ~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.+..+|..+..+|+|||++++.+.+
T Consensus 219 ~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 219 ELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEec
Confidence 6888999999999999999988765
No 434
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=32.35 E-value=1.6e+02 Score=26.25 Aligned_cols=79 Identities=14% Similarity=0.094 Sum_probs=42.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeCCc----------e-EEEEccccccCCCCceeEEEecccc
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQYLI----------L-EVIQNKIENVELPEKVDIIVSEWMG 118 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~~~----------i-~~~~~d~~~~~~~~~fDlIv~~~~~ 118 (252)
.+|.=||+|.-+..+ +..+...|. ..|+++|... + .....+.... -...|+|+...-
T Consensus 7 ~~I~IIG~G~mG~sl--------a~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~--~~~aDvViiavp- 75 (307)
T PRK07502 7 DRVALIGIGLIGSSL--------ARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEA--VKGADLVILCVP- 75 (307)
T ss_pred cEEEEEeeCHHHHHH--------HHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHH--hcCCCEEEECCC-
Confidence 578889998743444 455555553 3688888711 0 0011111100 146899877331
Q ss_pred cccCChhhHHHHHHHHhccccCCeEEE
Q psy9773 119 FYLLHESMIDSVIFARDKFLKPEGVMY 145 (252)
Q Consensus 119 ~~l~~~~~~~~~l~~l~~~LkpgG~lv 145 (252)
. .....++..+...+++|++++
T Consensus 76 ----~-~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 76 ----V-GASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred ----H-HHHHHHHHHHHhhCCCCCEEE
Confidence 1 223455666666777777554
No 435
>PRK07985 oxidoreductase; Provisional
Probab=32.21 E-value=1.5e+02 Score=25.94 Aligned_cols=93 Identities=9% Similarity=0.011 Sum_probs=50.6
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCC----
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVEL---- 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~---- 105 (252)
..++++|-.|++.| +- --++..+++.|+ +|+.++. .++.++.+|+.+...
T Consensus 47 ~~~k~vlITGas~g--IG-----~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 47 LKDRKALVTGGDSG--IG-----RAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred cCCCEEEEECCCCc--HH-----HHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHH
Confidence 45679999998665 21 122445555664 4665532 235677888876421
Q ss_pred ------C-CceeEEEecccccc----cC--Chh-----------hHHHHHHHHhccccCCeEEEeec
Q psy9773 106 ------P-EKVDIIVSEWMGFY----LL--HES-----------MIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 106 ------~-~~fDlIv~~~~~~~----l~--~~~-----------~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
. +..|+++.+..... +. ... ....++..+.+.|+.+|.+++..
T Consensus 119 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 119 VHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 1 46788887432110 00 011 12344555666667778777644
No 436
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=31.85 E-value=2.7e+02 Score=24.27 Aligned_cols=85 Identities=16% Similarity=0.033 Sum_probs=45.1
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhh-cCCCcEEEeeC----------Cce-EEEEccccccC------CC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTK-VHPLDHYAPQY----------LIL-EVIQNKIENVE------LP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~-~g~~~v~gvD~----------~~i-~~~~~d~~~~~------~~ 106 (252)
....+|.+||=.|++.|--.. ...+++ .|+ +++++.. ..+ .++...-.++. .+
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~--------aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~ 209 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSL--------VGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAP 209 (329)
T ss_pred cCCCCCCEEEEecCccHHHHH--------HHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCC
Confidence 456788999998864432133 333333 564 5777664 011 12211111110 11
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+.+|+|+-.. .. ..+....+.|+++|+++...
T Consensus 210 ~gvd~vld~~--------g~--~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 210 DGIDCYFDNV--------GG--EFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred CCcEEEEECC--------CH--HHHHHHHHhhccCCEEEEEc
Confidence 4589886521 11 23456678889999998643
No 437
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=31.75 E-value=1.3e+02 Score=25.18 Aligned_cols=61 Identities=16% Similarity=0.162 Sum_probs=37.5
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------CceEEEEccccccCCC-----------Cce
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------LILEVIQNKIENVELP-----------EKV 109 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------~~i~~~~~d~~~~~~~-----------~~f 109 (252)
..++++|=.|++.| +- ..++..+++.|. +|++++. .++.++.+|+.+...- +++
T Consensus 6 ~~~k~vlItGas~~--iG-----~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 6 FSGKTVWVTGAAQG--IG-----YAVALAFVEAGA-KVIGFDQAFLTQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred CCCCEEEEeCCCch--HH-----HHHHHHHHHCCC-EEEEEecchhhhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45678998888765 21 112344555664 5777765 3567788888655211 458
Q ss_pred eEEEecc
Q psy9773 110 DIIVSEW 116 (252)
Q Consensus 110 DlIv~~~ 116 (252)
|+|+.+.
T Consensus 78 d~vi~~a 84 (252)
T PRK08220 78 DVLVNAA 84 (252)
T ss_pred CEEEECC
Confidence 9998843
No 438
>PRK07877 hypothetical protein; Provisional
Probab=31.73 E-value=1.1e+02 Score=31.30 Aligned_cols=34 Identities=12% Similarity=0.061 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~ 90 (252)
....+|+=+|||-|+.. +..++..|. .+++-+|.
T Consensus 105 L~~~~V~IvG~GlGs~~---------a~~LaraGvvG~l~lvD~ 139 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAI---------AHTLAAEGLCGELRLADF 139 (722)
T ss_pred HhcCCEEEEEecHHHHH---------HHHHHHccCCCeEEEEcC
Confidence 34578999999976433 577777784 78998888
No 439
>PRK14851 hypothetical protein; Provisional
Probab=31.24 E-value=1.1e+02 Score=30.93 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=25.8
Q ss_pred CCCCEEEEEcCC-cCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTG-TGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcG-tG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+.+|+=+||| .|+. . +..+++.|..+++-+|.
T Consensus 41 L~~~~VlIvG~GGlGs~-v--------a~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGV-H--------LITMVRTGIGRFHIADF 75 (679)
T ss_pred HhcCeEEEECcCHHHHH-H--------HHHHHHhCCCeEEEEcC
Confidence 345899999998 5633 3 56777788888888887
No 440
>KOG3851|consensus
Probab=31.09 E-value=81 Score=29.36 Aligned_cols=35 Identities=20% Similarity=-0.000 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHh-hcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCT-KVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~ 90 (252)
...-.||-+|.|+|+... +..+. +.+..+|-.+|.
T Consensus 37 ~~h~kvLVvGGGsgGi~~--------A~k~~rkl~~g~vgIvep 72 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGM--------AAKFYRKLGSGSVGIVEP 72 (446)
T ss_pred ccceEEEEEcCCcchhHH--------HHHHHhhcCCCceEEecc
Confidence 345689999999997665 33333 355556777776
No 441
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=30.75 E-value=51 Score=33.22 Aligned_cols=34 Identities=15% Similarity=-0.077 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+.+||=+|||+=+... +..++..|..+++.+|.
T Consensus 337 ~~~kVLIvGaGGLGs~V--------A~~La~~GVg~ItlVD~ 370 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNV--------ARCLIGWGVRHITFVDN 370 (664)
T ss_pred hcCeEEEECCcHHHHHH--------HHHHHHcCCCeEEEEcC
Confidence 46899999999843444 57788889899999998
No 442
>KOG0022|consensus
Probab=30.74 E-value=77 Score=29.32 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
+...+|.++.-+|+|.=+... ..-+..+|+.+++|+|+
T Consensus 188 Akv~~GstvAVfGLG~VGLav--------~~Gaka~GAsrIIgvDi 225 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAV--------AMGAKAAGASRIIGVDI 225 (375)
T ss_pred cccCCCCEEEEEecchHHHHH--------HHhHHhcCcccEEEEec
Confidence 456677777777777643333 44455588899999999
No 443
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=30.43 E-value=1.2e+02 Score=28.63 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=39.5
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCC----CceeEEE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELP----EKVDIIV 113 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~----~~fDlIv 113 (252)
.+||=||||.=+... +.-+++.+..+|+..|- .+++.++.|+.+.+.- ..+|+||
T Consensus 2 ~~ilviGaG~Vg~~v--------a~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVV--------AHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHH--------HHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 478999997544444 45556666567888887 3678888888877422 5679998
Q ss_pred e
Q psy9773 114 S 114 (252)
Q Consensus 114 ~ 114 (252)
+
T Consensus 74 n 74 (389)
T COG1748 74 N 74 (389)
T ss_pred E
Confidence 7
No 444
>KOG2352|consensus
Probab=30.33 E-value=58 Score=31.51 Aligned_cols=92 Identities=14% Similarity=0.101 Sum_probs=52.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEcc--------cccc-----C-
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQNK--------IENV-----E- 104 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~d--------~~~~-----~- 104 (252)
..+..+|-+|-|.| .+ .+++....+...++++++ ....|.+.+ -... .
T Consensus 294 ~~~~~~lvvg~ggG--~l-------~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~ 364 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGG--GL-------PSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKS 364 (482)
T ss_pred cccCcEEEEecCCC--cc-------ccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhc
Confidence 34567888998888 44 023333355467888887 111222222 1111 0
Q ss_pred --CCCceeEEEeccc---ccccCChh---hHHHHHHHHhccccCCeEEEeec
Q psy9773 105 --LPEKVDIIVSEWM---GFYLLHES---MIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 105 --~~~~fDlIv~~~~---~~~l~~~~---~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
-...||+++...- .+.+...+ -...++..++..|.|.|.+++.-
T Consensus 365 ~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl 416 (482)
T KOG2352|consen 365 QQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL 416 (482)
T ss_pred cccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence 1146999987221 12222222 34577888899999999997754
No 445
>PRK14852 hypothetical protein; Provisional
Probab=30.03 E-value=1.2e+02 Score=32.20 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=26.1
Q ss_pred CCCCEEEEEcCC-cCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTG-TGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcG-tG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
....+|+=+||| .|+. . +..++..|..+++.+|.
T Consensus 330 L~~srVlVvGlGGlGs~-i--------a~~LAraGVG~I~L~D~ 364 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGI-H--------LMTLARTGIGNFNLADF 364 (989)
T ss_pred HhcCcEEEECCcHHHHH-H--------HHHHHHcCCCeEEEEcC
Confidence 345799999999 5633 3 57777888888998888
No 446
>PRK14029 pyruvate/ketoisovalerate ferredoxin oxidoreductase subunit gamma; Provisional
Probab=29.73 E-value=2.8e+02 Score=22.80 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=21.4
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+|++++... ..+. . .+....|+|||++++...
T Consensus 65 ~~~Dilva~~~-------~~~~-~-~~~~~~l~~~g~vi~n~~ 98 (185)
T PRK14029 65 YEPDVVVVLDP-------SLLD-T-VDVTAGLKDGGIVIVNTE 98 (185)
T ss_pred CCCCEEEEcCH-------HHhh-h-chHhhCcCCCcEEEEECC
Confidence 78999988221 1111 1 123467899999998854
No 447
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=29.60 E-value=3.4e+02 Score=23.92 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=20.3
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+|+.... . . .+..+.+.|+++|+++...
T Consensus 223 ~gvd~vid~~g-----~-~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 223 EGVDVYFDNVG-----G-E----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred CCceEEEECCC-----c-H----HHHHHHHHhccCCEEEEEe
Confidence 46899875211 1 1 1345568899999998643
No 448
>PRK07576 short chain dehydrogenase; Provisional
Probab=29.50 E-value=1.7e+02 Score=25.04 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=35.9
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCC------
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVEL------ 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~------ 105 (252)
..++++|-.|++.| += -.++..++..|+ +|++++. .++.++.+|+.+...
T Consensus 7 ~~~k~ilItGasgg--IG-----~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 7 FAGKNVVVVGGTSG--IN-----LGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCCCEEEEECCCch--HH-----HHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 45788999997555 21 111334555664 5888775 245667888865421
Q ss_pred -----CCceeEEEec
Q psy9773 106 -----PEKVDIIVSE 115 (252)
Q Consensus 106 -----~~~fDlIv~~ 115 (252)
-+.+|++|++
T Consensus 79 ~~~~~~~~iD~vi~~ 93 (264)
T PRK07576 79 QIADEFGPIDVLVSG 93 (264)
T ss_pred HHHHHcCCCCEEEEC
Confidence 0457999874
No 449
>PRK09072 short chain dehydrogenase; Provisional
Probab=29.36 E-value=1.7e+02 Score=24.76 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCC--------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVEL-------- 105 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~-------- 105 (252)
.++++|=.|++.| +- -.++..++..|+ +|++++. .++.++.+|+.+...
T Consensus 4 ~~~~vlItG~s~~--iG-----~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 4 KDKRVLLTGASGG--IG-----QALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCCEEEEECCCch--HH-----HHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 4678999998776 21 122444566674 5888775 256788888876531
Q ss_pred --CCceeEEEecc
Q psy9773 106 --PEKVDIIVSEW 116 (252)
Q Consensus 106 --~~~fDlIv~~~ 116 (252)
-+..|+|+...
T Consensus 76 ~~~~~id~lv~~a 88 (263)
T PRK09072 76 REMGGINVLINNA 88 (263)
T ss_pred HhcCCCCEEEECC
Confidence 04579888843
No 450
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=29.20 E-value=1.1e+02 Score=27.18 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=21.1
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
+.+|+++.... . ...+....+.|+++|+++...
T Consensus 235 ~~~d~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 235 RGVDCVIEAVG-----F----EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCCcEEEEccC-----C----HHHHHHHHHHhhcCCEEEEEc
Confidence 46898875211 1 134566668889999988543
No 451
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=28.82 E-value=1.8e+02 Score=25.89 Aligned_cols=87 Identities=18% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC----------ce-EEEEccccc-------cCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------IL-EVIQNKIEN-------VELP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------~i-~~~~~d~~~-------~~~~ 106 (252)
....++.+||=.|+|.=+... ...+...|+..+++++.. .+ .++...-.+ +...
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~--------~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~ 233 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMA--------VAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGG 233 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHH--------HHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCC
Confidence 456778899988865221121 223333566568887761 11 111111111 1111
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+|+.... + ...+..+.+.|+++|+++...
T Consensus 234 ~~~d~vld~~g-----~----~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 234 KGVDAVIIAGG-----G----QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CCCcEEEECCC-----C----HHHHHHHHHHhhcCCEEEEec
Confidence 45898875211 1 134566678889999988543
No 452
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=28.19 E-value=3.3e+02 Score=22.24 Aligned_cols=82 Identities=10% Similarity=0.148 Sum_probs=49.8
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------------------------CceEEEE
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------------------------LILEVIQ 97 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------------------------~~i~~~~ 97 (252)
+|.=+|+|+=+..+ +..++..| .+|+.+|. .++++ .
T Consensus 1 ~V~ViGaG~mG~~i--------A~~~a~~G-~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~-~ 70 (180)
T PF02737_consen 1 KVAVIGAGTMGRGI--------AALFARAG-YEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF-T 70 (180)
T ss_dssp EEEEES-SHHHHHH--------HHHHHHTT-SEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE-E
T ss_pred CEEEEcCCHHHHHH--------HHHHHhCC-CcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc-c
Confidence 35667887654444 67777777 57999988 23332 2
Q ss_pred ccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 98 NKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 98 ~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.|+..+ ...|+|+=.. .....--..+|.++.+++.|+.+|...+.+
T Consensus 71 ~dl~~~---~~adlViEai----~E~l~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 71 TDLEEA---VDADLVIEAI----PEDLELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp SSGGGG---CTESEEEE-S-----SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred cCHHHH---hhhheehhhc----cccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence 344333 3688886533 234456678999999999999998876654
No 453
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=27.88 E-value=54 Score=27.09 Aligned_cols=87 Identities=16% Similarity=0.058 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceEEEEccccc---cCCC---CceeEEEecccccccC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIEN---VELP---EKVDIIVSEWMGFYLL 122 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~~~~~d~~~---~~~~---~~fDlIv~~~~~~~l~ 122 (252)
.+++|.=||.|+=+... +.-+...|..-+++.-...-.+..+...- .+.. ...|+|+.. ++
T Consensus 3 ~~k~IAViGyGsQG~a~--------AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L-----~P 69 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAH--------ALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLL-----LP 69 (165)
T ss_dssp CTSEEEEES-SHHHHHH--------HHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE------S-
T ss_pred CCCEEEEECCChHHHHH--------HHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEe-----CC
Confidence 46889999998765554 55566666432223322110110000000 0111 458888651 23
Q ss_pred ChhhHHHHH-HHHhccccCCeEEEeecc
Q psy9773 123 HESMIDSVI-FARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 123 ~~~~~~~~l-~~l~~~LkpgG~lv~~~~ 149 (252)
+. ....+. ..+...|+||-.|+|.+.
T Consensus 70 D~-~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 70 DE-VQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HH-HHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred hH-HHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 33 334444 788899999999999886
No 454
>TIGR02175 PorC_KorC 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes the gamma subunit. In Pyrococcus furious, enzymes active on pyruvate and 2-ketoisovalerate share a common gamma subunit.
Probab=27.50 E-value=2.4e+02 Score=22.98 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=20.5
Q ss_pred CceeEEEecccccccCChhhHHHHHH--HHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIF--ARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~--~l~~~LkpgG~lv~~~ 148 (252)
...|++++... . .+. +..+.|+|||++++..
T Consensus 65 ~~~D~lva~~~-~----------~~~~~~~~~~l~~gg~ii~d~ 97 (177)
T TIGR02175 65 YEPDYVVVLDP-T----------LLKTVNVTAGLKEDGILIVNT 97 (177)
T ss_pred CCCCEEEEcCH-H----------HhCccchhhCcCCCeEEEEEC
Confidence 67899988321 1 111 1346789999999875
No 455
>KOG2811|consensus
Probab=27.16 E-value=1.7e+02 Score=27.53 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=29.9
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhc-CCCcEEE---eeC----------------CceEEEEccccccCC
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKV-HPLDHYA---PQY----------------LILEVIQNKIENVEL 105 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~-g~~~v~g---vD~----------------~~i~~~~~d~~~~~~ 105 (252)
.-++++|||.| -| +.+.+.. +..+++- +|- ..+.-++.|+.++.+
T Consensus 184 ~~~vEFGAGrg--~L--------s~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~~vi~R~riDI~dLkL 248 (420)
T KOG2811|consen 184 SCFVEFGAGRG--EL--------SRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNSLVIKRIRIDIEDLKL 248 (420)
T ss_pred ceEEEecCCch--HH--------HHHHHHHhccccEEEEEeecccchhhhhhhhhhccCcchhheeEeeHHhcCc
Confidence 68999999999 77 6666553 2244555 554 234556778877754
No 456
>PRK12742 oxidoreductase; Provisional
Probab=27.08 E-value=2e+02 Score=23.80 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------CceEEEEccccccCC-------CCc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------LILEVIQNKIENVEL-------PEK 108 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------~~i~~~~~d~~~~~~-------~~~ 108 (252)
..+++||=.|++.| += -.++..++..|+ +|+.+.. ..+.++.+|+.+... .+.
T Consensus 4 ~~~k~vlItGasgg--IG-----~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 4 FTGKKVLVLGGSRG--IG-----AAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCCCEEEEECCCCh--HH-----HHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCC
Confidence 34678999998666 21 111344455564 4555432 135666777755421 146
Q ss_pred eeEEEecc
Q psy9773 109 VDIIVSEW 116 (252)
Q Consensus 109 fDlIv~~~ 116 (252)
+|++|.+.
T Consensus 76 id~li~~a 83 (237)
T PRK12742 76 LDILVVNA 83 (237)
T ss_pred CcEEEECC
Confidence 89888743
No 457
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=26.82 E-value=4.6e+02 Score=23.38 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=21.0
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+|+.... . ...+....+.|+++|+++...
T Consensus 248 ~~~d~vid~~g-----~----~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 248 RGADVVIEASG-----H----PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CCCcEEEECCC-----C----hHHHHHHHHHhccCCEEEEEc
Confidence 46899875211 1 123455568889999998654
No 458
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=26.51 E-value=3.1e+02 Score=24.00 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCCCCCEEEEEcCCc-CchhhhhccCccchHHHhhcCCCcEEEeeCC----------ce-EEEEcccccc-----CCCC
Q psy9773 45 PNIFAGKTVLDVGTGT-GKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------IL-EVIQNKIENV-----ELPE 107 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGt-G~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------~i-~~~~~d~~~~-----~~~~ 107 (252)
....++.+||-+|+|. | .. ....+...|++.+++++.. .+ .++..+-... ....
T Consensus 155 ~~~~~g~~vlI~g~g~vg--~~-------~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 225 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIG--LL-------LAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPY 225 (334)
T ss_pred cCCCCCCEEEEECCCHHH--HH-------HHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCC
Confidence 5667889999998642 3 22 0223333554446666541 11 1221111110 1125
Q ss_pred ceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.+|+++.... . ...+..+.+.|+++|+++...
T Consensus 226 ~vd~v~~~~~-----~----~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATG-----V----PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCC-----C----hHHHHHHHHHHhcCCEEEEEe
Confidence 6899976211 1 134555668889999997653
No 459
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=26.48 E-value=54 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.009 Sum_probs=24.8
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+|+=+|||.=+..+ +..+++.|..+++-+|.
T Consensus 2 ~~~v~iiG~G~vGs~v--------a~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEV--------AKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHH--------HHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHH--------HHHHHHhCCCceeecCC
Confidence 4689999998554555 67777788888888887
No 460
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=25.52 E-value=4.6e+02 Score=24.19 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=22.3
Q ss_pred CCCCCCCEEEEEcC-C-cCchhhhhccCccchHHHhhc---CCCcEEEeeC
Q psy9773 45 PNIFAGKTVLDVGT-G-TGKSILLQGHGVDHHSFCTKV---HPLDHYAPQY 90 (252)
Q Consensus 45 ~~~~~~~~VLDlGc-G-tG~~~ll~~~~v~~s~~~a~~---g~~~v~gvD~ 90 (252)
....++.+||=+|+ | .| .+ +..+++. |+.+|+++|.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG--~~--------aiq~ak~~G~g~~~Vi~~~~ 211 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMG--LM--------AIDYAIHGPIGPSLLVVTDV 211 (410)
T ss_pred cCCCCCCEEEEEeCCCHHH--HH--------HHHHHHhcccCCceEEEEcC
Confidence 45677889999974 3 33 33 3434443 3456888877
No 461
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=25.01 E-value=2.8e+02 Score=29.58 Aligned_cols=33 Identities=12% Similarity=-0.130 Sum_probs=25.0
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+||=+|||.=+..+ +.-++..|.++++.+|.
T Consensus 24 ~s~VLIiG~gGLG~Ei--------aKnL~laGVg~iti~D~ 56 (1008)
T TIGR01408 24 KSNVLISGMGGLGLEI--------AKNLVLAGVKSVTLHDT 56 (1008)
T ss_pred hCcEEEECCCHHHHHH--------HHHHHHcCCCeEEEEeC
Confidence 4789999997543344 66677788889999987
No 462
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=24.78 E-value=2.4e+02 Score=25.55 Aligned_cols=87 Identities=9% Similarity=-0.107 Sum_probs=46.2
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceE---EEEc-cccccCC-CCceeEEEeccccccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE---VIQN-KIENVEL-PEKVDIIVSEWMGFYL 121 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~---~~~~-d~~~~~~-~~~fDlIv~~~~~~~l 121 (252)
...+++|.=+|+|.=+-.+ +..+...|. +|+++|...-. +... ...++.. -...|+|++..
T Consensus 133 ~l~g~tvgIvG~G~IG~~v--------A~~l~afG~-~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~l----- 198 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKV--------AQSLQTWGF-PLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLL----- 198 (312)
T ss_pred CcCCCEEEEECCCHHHHHH--------HHHHHHCCC-EEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECC-----
Confidence 3467899999999632223 344444564 68888862110 1100 0111110 05679997632
Q ss_pred CChhhHHHHH-HHHhccccCCeEEEee
Q psy9773 122 LHESMIDSVI-FARDKFLKPEGVMYPY 147 (252)
Q Consensus 122 ~~~~~~~~~l-~~l~~~LkpgG~lv~~ 147 (252)
+..+.-..++ ......|+||++|+-.
T Consensus 199 Plt~~T~~li~~~~l~~mk~ga~lIN~ 225 (312)
T PRK15469 199 PNTPETVGIINQQLLEQLPDGAYLLNL 225 (312)
T ss_pred CCCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence 3333334444 3466888999877643
No 463
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.74 E-value=2.3e+02 Score=26.23 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=55.1
Q ss_pred CCEEEEEc-CCcCchhhhhccCccchHHHhhcCCCcEE--EeeC---------------CceEEEEccccccCC----C-
Q psy9773 50 GKTVLDVG-TGTGKSILLQGHGVDHHSFCTKVHPLDHY--APQY---------------LILEVIQNKIENVEL----P- 106 (252)
Q Consensus 50 ~~~VLDlG-cGtG~~~ll~~~~v~~s~~~a~~g~~~v~--gvD~---------------~~i~~~~~d~~~~~~----~- 106 (252)
+-.||=+| -|+|.++-+.++ +..+...| ++|. |.|- .++.++.+.-...|. .
T Consensus 139 p~Vil~vGVNG~GKTTTIaKL----A~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKL----AKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred cEEEEEEecCCCchHhHHHHH----HHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHH
Confidence 46789999 488875542222 23333444 3444 3444 556777654322222 1
Q ss_pred ------CceeEEEecccccccCChhhHHHHHHHHhccccCCe
Q psy9773 107 ------EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEG 142 (252)
Q Consensus 107 ------~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG 142 (252)
..+|+|++..+ ..+++..++..=|.++.|+++|.-
T Consensus 214 i~~Akar~~DvvliDTA-GRLhnk~nLM~EL~KI~rV~~k~~ 254 (340)
T COG0552 214 IQAAKARGIDVVLIDTA-GRLHNKKNLMDELKKIVRVIKKDD 254 (340)
T ss_pred HHHHHHcCCCEEEEeCc-ccccCchhHHHHHHHHHHHhcccc
Confidence 67999999775 556777788888899999998855
No 464
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=24.66 E-value=1e+02 Score=28.32 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=47.4
Q ss_pred CceEEEEccccccCC--C-CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 91 LILEVIQNKIENVEL--P-EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 91 ~~i~~~~~d~~~~~~--~-~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
.++.++.+|+..+-. + +.+|.++...+-.+++.. .+..++..+.+-+.||..+++-...
T Consensus 307 ~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~-qln~lws~isrta~~gA~VifRtaa 368 (414)
T COG5379 307 RRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDG-QLNSLWSEISRTAEAGARVIFRTAA 368 (414)
T ss_pred hheeeecccHHHHhccCCCCCcceEEEecchhhcccc-hHHHHHHHHhhccCCCcEEEEeccc
Confidence 678899999988754 3 789998886665555443 6899999999999999999997653
No 465
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=24.29 E-value=2.4e+02 Score=19.81 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=21.3
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEee
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQ 89 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD 89 (252)
....+++++-+|+|.-+..+ ...+...+..+++.+|
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~--------a~~l~~~~~~~v~v~~ 54 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGI--------AKLLADEGGKKVVLCD 54 (86)
T ss_pred CCCCCCEEEEECCCHHHHHH--------HHHHHHcCCCEEEEEc
Confidence 44677899999998654333 3444444334454443
No 466
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.18 E-value=1.4e+02 Score=27.88 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=39.2
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC---------------ceEEEEccccccCCCCceeEEE
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL---------------ILEVIQNKIENVELPEKVDIIV 113 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~---------------~i~~~~~d~~~~~~~~~fDlIv 113 (252)
.+++|+=+|+|..+..+ +..++..|+ .|+++|.. ++.++.++..+. ..+.+|+||
T Consensus 4 ~~k~v~iiG~g~~G~~~--------A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGVSGLAL--------AKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVLGEYPEE-FLEGVDLVV 73 (450)
T ss_pred CCCEEEEECCCHHHHHH--------HHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh-HhhcCCEEE
Confidence 46889999998765566 777888884 69999882 344555554431 125689888
Q ss_pred ecc
Q psy9773 114 SEW 116 (252)
Q Consensus 114 ~~~ 116 (252)
.+.
T Consensus 74 ~~~ 76 (450)
T PRK14106 74 VSP 76 (450)
T ss_pred ECC
Confidence 744
No 467
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=24.14 E-value=2.8e+02 Score=23.93 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEe--eC----------CceEEEEccccccCCCCceeEEEe
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAP--QY----------LILEVIQNKIENVELPEKVDIIVS 114 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gv--D~----------~~i~~~~~d~~~~~~~~~fDlIv~ 114 (252)
..+++||=+|+|.-+..- ...+...|+ +|+-+ ++ .+++++...+..-.. ..+++|++
T Consensus 23 ~~~~~VLVVGGG~VA~RK--------~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl-~g~~LVia 91 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIK--------GKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFI-KDKHLIVI 91 (223)
T ss_pred CCCCEEEEECCCHHHHHH--------HHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHh-CCCcEEEE
Confidence 457899999999875444 344555665 35544 43 467777755543322 35677776
No 468
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=23.86 E-value=1.7e+02 Score=21.70 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=24.8
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI 150 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~ 150 (252)
..+|+|+-.. .. ...+.....+|+|+|++++....
T Consensus 57 ~~~d~vid~~-----g~----~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 57 RGVDVVIDCV-----GS----GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp SSEEEEEESS-----SS----HHHHHHHHHHEEEEEEEEEESST
T ss_pred ccceEEEEec-----Cc----HHHHHHHHHHhccCCEEEEEEcc
Confidence 4799997521 11 24667777899999999987655
No 469
>PRK06153 hypothetical protein; Provisional
Probab=23.72 E-value=90 Score=29.48 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+.+|+=+|||.-+..+ ...+++.|..+++.+|.
T Consensus 175 ~~~~VaIVG~GG~GS~V--------a~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYI--------LDLVAKTPVREIHLFDG 208 (393)
T ss_pred hhCcEEEEcCCccHHHH--------HHHHHHcCCCEEEEECC
Confidence 45799999997544445 67788888888999988
No 470
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=23.43 E-value=4e+02 Score=23.38 Aligned_cols=82 Identities=18% Similarity=0.247 Sum_probs=48.7
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC--ceE------------------------------E-EE
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL--ILE------------------------------V-IQ 97 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~--~i~------------------------------~-~~ 97 (252)
.+|.=||+|+-+..+ +..++..| ..|+.+|.. .+. + ..
T Consensus 5 ~kI~vIGaG~mG~~i--------A~~la~~G-~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 75 (292)
T PRK07530 5 KKVGVIGAGQMGNGI--------AHVCALAG-YDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA 75 (292)
T ss_pred CEEEEECCcHHHHHH--------HHHHHHCC-CeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee
Confidence 468889999766566 66677776 468888871 000 0 01
Q ss_pred ccccccCCCCceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 98 NKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 98 ~d~~~~~~~~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
.++.. -...|+|+... .........++..+...++|+.+++..+
T Consensus 76 ~~~~~---~~~aD~Vieav----pe~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 76 TDLED---LADCDLVIEAA----TEDETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred CCHHH---hcCCCEEEEcC----cCCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 11111 14678887622 1122334577788888899988776443
No 471
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=23.41 E-value=3.1e+02 Score=24.82 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=22.3
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+|.=+|+|+=+..+ +..++..+...++-+|+
T Consensus 7 ~KI~IIGaG~vG~~i--------a~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 7 RKISLIGSGNIGGVM--------AYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CEEEEECCCHHHHHH--------HHHHHhCCCCeEEEEeC
Confidence 689999998844455 55556555445888887
No 472
>PRK12939 short chain dehydrogenase; Provisional
Probab=23.36 E-value=2.6e+02 Score=23.11 Aligned_cols=61 Identities=15% Similarity=0.077 Sum_probs=36.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCCC-----
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVELP----- 106 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~~----- 106 (252)
..++++|=.|++.| +- -.++..+++.|. ++++++. .++.++.+|+.+...-
T Consensus 5 ~~~~~vlItGa~g~--iG-----~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 5 LAGKRALVTGAARG--LG-----AAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCCEEEEeCCCCh--HH-----HHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 35688998887554 21 112344455664 5777664 2467888888765310
Q ss_pred ------CceeEEEecc
Q psy9773 107 ------EKVDIIVSEW 116 (252)
Q Consensus 107 ------~~fDlIv~~~ 116 (252)
+.+|+|+...
T Consensus 77 ~~~~~~~~id~vi~~a 92 (250)
T PRK12939 77 AAAAALGGLDGLVNNA 92 (250)
T ss_pred HHHHHcCCCCEEEECC
Confidence 4689888743
No 473
>KOG0821|consensus
Probab=23.36 E-value=3.6e+02 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.3
Q ss_pred HHhCCCCCCCCEEEEEcCCcCchhh
Q psy9773 41 ICDNPNIFAGKTVLDVGTGTGKSIL 65 (252)
Q Consensus 41 l~~~~~~~~~~~VLDlGcGtG~~~l 65 (252)
|...+....+.-|+++|.|.|+++.
T Consensus 42 IvK~A~~~~~~~v~eIgPgpggitR 66 (326)
T KOG0821|consen 42 IVKKAGNLTNAYVYEIGPGPGGITR 66 (326)
T ss_pred HHHhccccccceeEEecCCCCchhH
Confidence 4444566677889999999997776
No 474
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=23.35 E-value=36 Score=27.88 Aligned_cols=88 Identities=14% Similarity=-0.028 Sum_probs=47.0
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCce--------EEEEccccccCCCCceeEEEecc
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLIL--------EVIQNKIENVELPEKVDIIVSEW 116 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i--------~~~~~d~~~~~~~~~fDlIv~~~ 116 (252)
.....|++|.=+|+|.=+-.+ +..+...|+ +|+++|...- .+...++.++. ...|+|+...
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~v--------A~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~~~l~ell--~~aDiv~~~~ 99 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAV--------ARRLKAFGM-RVIGYDRSPKPEEGADEFGVEYVSLDELL--AQADIVSLHL 99 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHH--------HHHHHHTT--EEEEEESSCHHHHHHHHTTEEESSHHHHH--HH-SEEEE-S
T ss_pred ccccCCCEEEEEEEcCCcCeE--------eeeeecCCc-eeEEecccCChhhhcccccceeeehhhhc--chhhhhhhhh
Confidence 345678999999998754444 556666775 7999998211 11222222221 4689998733
Q ss_pred cccccCChhhHHHHHHHHhccccCCeEEEee
Q psy9773 117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPY 147 (252)
Q Consensus 117 ~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~ 147 (252)
-+. .....-+=......|++|.+|+-.
T Consensus 100 plt----~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 100 PLT----PETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SSS----TTTTTSBSHHHHHTSTTTEEEEES
T ss_pred ccc----cccceeeeeeeeeccccceEEEec
Confidence 211 000011112234777888887754
No 475
>PRK06484 short chain dehydrogenase; Validated
Probab=23.14 E-value=2.8e+02 Score=26.39 Aligned_cols=60 Identities=13% Similarity=0.038 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCCC---------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVELP--------- 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~~--------- 106 (252)
.++++|=.|++.| += --++..+++.|+ +|+.++. ..+..+.+|+.+...-
T Consensus 268 ~~k~~lItGas~g--IG-----~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 268 SPRVVAITGGARG--IG-----RAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred CCCEEEEECCCcH--HH-----HHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHH
Confidence 4577888887776 21 122445566674 6887775 2445677888665210
Q ss_pred --CceeEEEecc
Q psy9773 107 --EKVDIIVSEW 116 (252)
Q Consensus 107 --~~fDlIv~~~ 116 (252)
+..|++|.+-
T Consensus 340 ~~g~id~li~nA 351 (520)
T PRK06484 340 RWGRLDVLVNNA 351 (520)
T ss_pred HcCCCCEEEECC
Confidence 5689998743
No 476
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.97 E-value=5.6e+02 Score=23.64 Aligned_cols=104 Identities=12% Similarity=0.076 Sum_probs=60.7
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCC-CcEEEeeC----------CceEEEEccccccCC----C-----Ccee
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHP-LDHYAPQY----------LILEVIQNKIENVEL----P-----EKVD 110 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~-~~v~gvD~----------~~i~~~~~d~~~~~~----~-----~~fD 110 (252)
.+|.=+|+|+-++.+ +..+++.|. ..+++.|. .+..++.+-...... . ..+|
T Consensus 2 ~kI~ViGaGswGTAL--------A~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 2 MKIAVIGAGSWGTAL--------AKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred ceEEEEcCChHHHHH--------HHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 467889999998888 888888753 35666654 233333311111110 1 3488
Q ss_pred EEEecccccccCChhhHHHHHHHHhccccCCeEEEeeccccccCCCCChhHHHHhhhhhC
Q psy9773 111 IIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAG 170 (252)
Q Consensus 111 lIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~w~~~~g 170 (252)
+|+... ++ .-+..++..+...|+++-.++.....+.. .....+...+....+
T Consensus 74 ~iv~av-----Ps-~~~r~v~~~l~~~l~~~~~iv~~sKGie~--~t~~l~seii~e~l~ 125 (329)
T COG0240 74 IIVIAV-----PS-QALREVLRQLKPLLLKDAIIVSATKGLEP--ETGRLLSEIIEEELP 125 (329)
T ss_pred EEEEEC-----Ch-HHHHHHHHHHhhhccCCCeEEEEeccccC--CCcchHHHHHHHHcC
Confidence 887622 22 24667778877788888888877655332 233344555555444
No 477
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=22.84 E-value=1.4e+02 Score=27.90 Aligned_cols=35 Identities=20% Similarity=0.086 Sum_probs=25.4
Q ss_pred CCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC
Q psy9773 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL 91 (252)
Q Consensus 46 ~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~ 91 (252)
.+.++.+||-|.+|-. +.+ ++ ...++++|++||++
T Consensus 32 ~i~~~d~vl~ItSaG~-N~L--------~y--L~~~P~~I~aVDlN 66 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGC-NAL--------DY--LLAGPKRIHAVDLN 66 (380)
T ss_pred CCCCCCeEEEEccCCc-hHH--------HH--HhcCCceEEEEeCC
Confidence 5788999999976543 455 44 34456899999993
No 478
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=22.69 E-value=1.4e+02 Score=26.87 Aligned_cols=34 Identities=12% Similarity=-0.130 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+||=+|||.=+..+ +.-++..|.++++.+|.
T Consensus 18 ~~s~VLIvG~gGLG~Ei--------aKnLalaGVg~itI~D~ 51 (286)
T cd01491 18 QKSNVLISGLGGLGVEI--------AKNLILAGVKSVTLHDT 51 (286)
T ss_pred hcCcEEEEcCCHHHHHH--------HHHHHHcCCCeEEEEcC
Confidence 34789999998544444 56677788888999987
No 479
>PRK08328 hypothetical protein; Provisional
Probab=22.69 E-value=80 Score=27.17 Aligned_cols=34 Identities=15% Similarity=-0.052 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+.+||=+|||.-+..+ +..+++.|..+++.+|.
T Consensus 26 ~~~~VlIiG~GGlGs~i--------a~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPV--------AYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHH--------HHHHHHcCCCEEEEEcC
Confidence 44789999999543444 57777888888999887
No 480
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.62 E-value=4.1e+02 Score=21.91 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------------CceEEEEccccccCCC-------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------------LILEVIQNKIENVELP------- 106 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------------~~i~~~~~d~~~~~~~------- 106 (252)
.+++||=.|++.| +- ..++..+++.|. +|++++. .++.++.+|+.+...-
T Consensus 4 ~~~~vlItGasg~--iG-----~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 4 EGKVAIVTGASSG--IG-----EGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CCcEEEEECCCCh--HH-----HHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4678999997655 21 112444555664 4888876 1255788888755211
Q ss_pred ----CceeEEEecc
Q psy9773 107 ----EKVDIIVSEW 116 (252)
Q Consensus 107 ----~~fDlIv~~~ 116 (252)
+.+|+||...
T Consensus 76 ~~~~~~~d~vi~~a 89 (251)
T PRK07231 76 LERFGSVDILVNNA 89 (251)
T ss_pred HHHhCCCCEEEECC
Confidence 3689998844
No 481
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=22.61 E-value=1.7e+02 Score=26.98 Aligned_cols=85 Identities=14% Similarity=-0.015 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC-c--------eEEEEccccccCCCCceeEEEecccc
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL-I--------LEVIQNKIENVELPEKVDIIVSEWMG 118 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~-~--------i~~~~~d~~~~~~~~~fDlIv~~~~~ 118 (252)
..+++|-=||+|+-+..+ +..+...|. +|+..+.. . ..+...+..+. ....|+|+...
T Consensus 15 L~gktIgIIG~GsmG~Al--------A~~L~~sG~-~Vvv~~r~~~~s~~~A~~~G~~~~s~~ea--a~~ADVVvLaV-- 81 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAH--------ALNLRDSGV-DVVVGLREGSKSWKKAEADGFEVLTVAEA--AKWADVIMILL-- 81 (330)
T ss_pred hCCCEEEEEeeHHHHHHH--------HHHHHHCCC-EEEEEECCchhhHHHHHHCCCeeCCHHHH--HhcCCEEEEcC--
Confidence 456789999999865555 555555664 45544331 0 01111111111 15679997722
Q ss_pred cccCChhhHHHHH-HHHhccccCCeEEEeecc
Q psy9773 119 FYLLHESMIDSVI-FARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 119 ~~l~~~~~~~~~l-~~l~~~LkpgG~lv~~~~ 149 (252)
+.. ....++ ..+...|+||.+|++...
T Consensus 82 ---Pd~-~~~~V~~~~I~~~Lk~g~iL~~a~G 109 (330)
T PRK05479 82 ---PDE-VQAEVYEEEIEPNLKEGAALAFAHG 109 (330)
T ss_pred ---CHH-HHHHHHHHHHHhcCCCCCEEEECCC
Confidence 222 335666 668888999998876654
No 482
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=22.27 E-value=2.7e+02 Score=23.37 Aligned_cols=61 Identities=13% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------------CceEEEEccccccCC------
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------------LILEVIQNKIENVEL------ 105 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------------~~i~~~~~d~~~~~~------ 105 (252)
..++++|=.|+++| +- -.++..+++.|+ +|+.++. .++.++.+|+.+...
T Consensus 7 l~~k~~lItGas~g--iG-----~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 7 LAGKNILITGSAQG--IG-----FLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred CCCCEEEEECCCCh--HH-----HHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHH
Confidence 35778999997766 21 122444555664 5777665 135567788765521
Q ss_pred -----CCceeEEEecc
Q psy9773 106 -----PEKVDIIVSEW 116 (252)
Q Consensus 106 -----~~~fDlIv~~~ 116 (252)
-+.+|+|+.+.
T Consensus 79 ~~~~~~~~id~vi~~a 94 (254)
T PRK08085 79 HIEKDIGPIDVLINNA 94 (254)
T ss_pred HHHHhcCCCCEEEECC
Confidence 04689998844
No 483
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=22.23 E-value=5.5e+02 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=21.3
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+|+.. . ......+..+.+.|+++|+++...
T Consensus 274 ~gvDvvld~-~-------g~~~~~~~~~~~~l~~~G~~v~~g 307 (384)
T cd08265 274 WGADIQVEA-A-------GAPPATIPQMEKSIAINGKIVYIG 307 (384)
T ss_pred CCCCEEEEC-C-------CCcHHHHHHHHHHHHcCCEEEEEC
Confidence 458988752 1 111234555667889999998653
No 484
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=22.23 E-value=1.5e+02 Score=26.77 Aligned_cols=86 Identities=17% Similarity=0.048 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCC----------ceE-EEEccccc-------cCCC
Q psy9773 45 PNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL----------ILE-VIQNKIEN-------VELP 106 (252)
Q Consensus 45 ~~~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~----------~i~-~~~~d~~~-------~~~~ 106 (252)
....++.+||-.|+|.=+... ...+...|+..+++++.. .+. ++..+-.. .. .
T Consensus 182 ~~~~~g~~vlI~g~g~vG~~~--------~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~-~ 252 (365)
T cd08278 182 LKPRPGSSIAVFGAGAVGLAA--------VMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT-G 252 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHH--------HHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh-C
Confidence 456678899888865311111 223334666568888761 111 12111111 11 2
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+|+-.. .. ...+..+.+.|+++|+++...
T Consensus 253 ~~~d~vld~~-----g~----~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 253 GGVDYALDTT-----GV----PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred CCCcEEEECC-----CC----cHHHHHHHHHhccCCEEEEeC
Confidence 4588886521 01 123556668889999988654
No 485
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.17 E-value=4e+02 Score=22.53 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCC--cCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCC-------
Q psy9773 48 FAGKTVLDVGTG--TGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVEL------- 105 (252)
Q Consensus 48 ~~~~~VLDlGcG--tG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~------- 105 (252)
..++++|-.|++ .| += --++..+++.|+ +|+.++. ..+.++++|+.+...
T Consensus 5 l~~k~~lItGas~~~g--IG-----~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 5 LSGKKIVVMGVANKRS--IA-----WGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred cCCCEEEEeCCCCCCc--hH-----HHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHH
Confidence 457889999986 34 11 112445556664 4666543 246678888875521
Q ss_pred ---C-CceeEEEecc
Q psy9773 106 ---P-EKVDIIVSEW 116 (252)
Q Consensus 106 ---~-~~fDlIv~~~ 116 (252)
. +.+|++|.+.
T Consensus 77 ~~~~~g~iD~lv~nA 91 (252)
T PRK06079 77 IKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHhCCCCEEEEcc
Confidence 0 5689988744
No 486
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.05 E-value=4.2e+02 Score=21.23 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC---------CceEEEEccccccCCCCceeEEEe
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY---------LILEVIQNKIENVELPEKVDIIVS 114 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~---------~~i~~~~~d~~~~~~~~~fDlIv~ 114 (252)
...|++||=+|+|.=+... ...+...|+ .|+-++. ..+.+....+..... ..+|+|++
T Consensus 10 ~l~~~~vlVvGGG~va~rk--------a~~Ll~~ga-~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl-~~a~lVia 76 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRK--------ASGLKDTGA-FVTVVSPEICKEMKELPYITWKQKTFSNDDI-KDAHLIYA 76 (157)
T ss_pred EcCCCEEEEECCCHHHHHH--------HHHHHhCCC-EEEEEcCccCHHHHhccCcEEEecccChhcC-CCceEEEE
Confidence 3578999999999764444 444555664 5666655 122332222222111 56899887
No 487
>KOG4364|consensus
Probab=22.04 E-value=2.2e+02 Score=28.91 Aligned_cols=15 Identities=0% Similarity=-0.385 Sum_probs=9.0
Q ss_pred CCCCCCCEEEEEcCC
Q psy9773 45 PNIFAGKTVLDVGTG 59 (252)
Q Consensus 45 ~~~~~~~~VLDlGcG 59 (252)
....++....++||-
T Consensus 93 ~~~~p~~~~s~~~~K 107 (811)
T KOG4364|consen 93 LPLSPLVDESYLKLK 107 (811)
T ss_pred cccCCccccccccCc
Confidence 344556666777763
No 488
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=21.96 E-value=1.4e+02 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=22.4
Q ss_pred CCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 48 FAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 48 ~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
..+.+|+-+|+|.=+... ...+...|+..++.++.
T Consensus 176 l~~~~V~ViGaG~iG~~~--------a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 176 LKGKKVLVIGAGEMGELA--------AKHLAAKGVAEITIANR 210 (311)
T ss_pred ccCCEEEEECcHHHHHHH--------HHHHHHcCCCEEEEEeC
Confidence 578999999997532222 23333345567887777
No 489
>PRK06182 short chain dehydrogenase; Validated
Probab=21.95 E-value=2.8e+02 Score=23.63 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC----------CceEEEEccccccCC-----------CCc
Q psy9773 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY----------LILEVIQNKIENVEL-----------PEK 108 (252)
Q Consensus 50 ~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~----------~~i~~~~~d~~~~~~-----------~~~ 108 (252)
+++||=.|++.| +- -.++..++..|. +|++++. .++.++.+|+.+... .+.
T Consensus 3 ~k~vlItGasgg--iG-----~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGASSG--IG-----KATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECCCCh--HH-----HHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 568898897665 21 111334455553 5777765 346788888876531 146
Q ss_pred eeEEEecc
Q psy9773 109 VDIIVSEW 116 (252)
Q Consensus 109 fDlIv~~~ 116 (252)
.|++|.+.
T Consensus 75 id~li~~a 82 (273)
T PRK06182 75 IDVLVNNA 82 (273)
T ss_pred CCEEEECC
Confidence 89998844
No 490
>PRK06500 short chain dehydrogenase; Provisional
Probab=21.77 E-value=3.9e+02 Score=22.07 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC-------------CceEEEEccccccCC----------
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY-------------LILEVIQNKIENVEL---------- 105 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~-------------~~i~~~~~d~~~~~~---------- 105 (252)
.+++||=.|++.| +- -.++..++..|+ +|++++. .++.++++|+.+...
T Consensus 5 ~~k~vlItGasg~--iG-----~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 5 QGKTALITGGTSG--IG-----LETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CCCEEEEeCCCch--HH-----HHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4678898998665 21 112344555664 5777764 245677788765421
Q ss_pred -CCceeEEEec
Q psy9773 106 -PEKVDIIVSE 115 (252)
Q Consensus 106 -~~~fDlIv~~ 115 (252)
.+.+|+||.+
T Consensus 77 ~~~~id~vi~~ 87 (249)
T PRK06500 77 AFGRLDAVFIN 87 (249)
T ss_pred HhCCCCEEEEC
Confidence 0468988873
No 491
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.71 E-value=1.9e+02 Score=25.49 Aligned_cols=31 Identities=19% Similarity=0.010 Sum_probs=22.9
Q ss_pred CEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 51 KTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 51 ~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
.+|.=||+|+-+..+ +..++..| ..|+.+|.
T Consensus 4 ~kIaViGaG~mG~~i--------A~~la~~G-~~V~l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQI--------AFQTAFHG-FDVTIYDI 34 (287)
T ss_pred cEEEEECCCHHHHHH--------HHHHHhcC-CeEEEEeC
Confidence 468888998765566 67777766 46888888
No 492
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=21.64 E-value=75 Score=27.17 Aligned_cols=31 Identities=13% Similarity=-0.021 Sum_probs=20.0
Q ss_pred CCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC
Q psy9773 49 AGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY 90 (252)
Q Consensus 49 ~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~ 90 (252)
...+++|+-||+| .+ ++.+... ...++.-|+
T Consensus 20 ~~~~~vepF~G~g--~V--------~~~~~~~-~~~vi~ND~ 50 (260)
T PF02086_consen 20 KHKTYVEPFAGGG--SV--------FLNLKQP-GKRVIINDI 50 (260)
T ss_dssp S-SEEEETT-TTS--HH--------HHCC----SSEEEEEES
T ss_pred CCCEEEEEecchh--HH--------HHHhccc-ccceeeeec
Confidence 6789999999999 44 3333223 467888888
No 493
>PRK05844 pyruvate flavodoxin oxidoreductase subunit gamma; Validated
Probab=21.22 E-value=3.9e+02 Score=21.90 Aligned_cols=31 Identities=13% Similarity=-0.184 Sum_probs=19.9
Q ss_pred ceeEEEecccccccCChhhHHHH-HHHHhccccCCeEEEeec
Q psy9773 108 KVDIIVSEWMGFYLLHESMIDSV-IFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 108 ~fDlIv~~~~~~~l~~~~~~~~~-l~~l~~~LkpgG~lv~~~ 148 (252)
.+|++++... ..+ .....+.|+|||++++.+
T Consensus 66 ~~Dilv~ld~----------~~~~~~~~~~~l~~~g~iiins 97 (186)
T PRK05844 66 QPDYVLVIDP----------GLVFIENIFANEKEDTKYIITT 97 (186)
T ss_pred CCCEEEEecH----------HHhccccHhcCcCCCeEEEEEC
Confidence 7999988221 111 123357889999997763
No 494
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=21.21 E-value=2.8e+02 Score=24.81 Aligned_cols=35 Identities=14% Similarity=-0.024 Sum_probs=21.9
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+|+|++..- . .....+.+...|+|||++++...
T Consensus 66 ~~~D~lv~~~~-------~-~~~~~~~~~~~l~~gg~vi~n~~ 100 (312)
T PRK14028 66 KTPDVAVIFDD-------K-LIDPMRFAIDAVKPGGYVILNTG 100 (312)
T ss_pred CCCCEEEEeCh-------h-hhccccHHhcCcCCCeEEEEeCC
Confidence 77999988321 1 11111223578899999998863
No 495
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=21.14 E-value=2.3e+02 Score=25.51 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=21.1
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
..+|+++.... . ...+..+.+.|+++|+++...
T Consensus 250 ~~vd~vld~~~-----~----~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 250 RGADYAFEAVG-----R----AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred CCCCEEEEcCC-----C----hHHHHHHHHHhhcCCeEEEEe
Confidence 45898865221 0 134566678889999998653
No 496
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=21.10 E-value=5.1e+02 Score=22.55 Aligned_cols=84 Identities=18% Similarity=0.083 Sum_probs=44.0
Q ss_pred CCCCCCCEEEEEcCC-cCchhhhhccCccchHHHh-hcCCCcEEEeeCC----------ceE-EEEccccccC--CCCce
Q psy9773 45 PNIFAGKTVLDVGTG-TGKSILLQGHGVDHHSFCT-KVHPLDHYAPQYL----------ILE-VIQNKIENVE--LPEKV 109 (252)
Q Consensus 45 ~~~~~~~~VLDlGcG-tG~~~ll~~~~v~~s~~~a-~~g~~~v~gvD~~----------~i~-~~~~d~~~~~--~~~~f 109 (252)
....++.+||-+||| .| .. ...++ ..|. +|++++.. ... ++...-.... ..+.+
T Consensus 158 ~~~~~~~~vlI~g~g~iG--~~--------~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 226 (330)
T cd08245 158 AGPRPGERVAVLGIGGLG--HL--------AVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGA 226 (330)
T ss_pred hCCCCCCEEEEECCCHHH--HH--------HHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCC
Confidence 456778899999886 44 22 23333 3453 57776551 111 1111100000 11458
Q ss_pred eEEEecccccccCChhhHHHHHHHHhccccCCeEEEeec
Q psy9773 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 110 DlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~ 148 (252)
|+++.... . ...+..+.+.|+++|.++...
T Consensus 227 d~vi~~~~-----~----~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVV-----S----GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCC-----c----HHHHHHHHHhcccCCEEEEEC
Confidence 88875211 1 124455668899999988654
No 497
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=21.05 E-value=3.4e+02 Score=23.42 Aligned_cols=37 Identities=3% Similarity=-0.052 Sum_probs=25.4
Q ss_pred CceeEEEecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 107 EKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 107 ~~fDlIv~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+|+|+...= ..+...++..+...+.+++.+++..+
T Consensus 58 ~~~D~iiv~vK------s~~~~~~l~~l~~~l~~~~~iv~~qN 94 (293)
T TIGR00745 58 PPADLVIITVK------AYQTEEAAALLLPLIGKNTKVLFLQN 94 (293)
T ss_pred CCCCEEEEecc------chhHHHHHHHhHhhcCCCCEEEEccC
Confidence 57999877221 12466778888888888888776543
No 498
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=21.02 E-value=4.1e+02 Score=24.02 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=14.3
Q ss_pred HHHHHhccccCCeEEEeec
Q psy9773 130 VIFARDKFLKPEGVMYPYK 148 (252)
Q Consensus 130 ~l~~l~~~LkpgG~lv~~~ 148 (252)
.+....+.|++||+++...
T Consensus 260 ~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 260 ALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred HHHHHHHHhcCCcEEEEeC
Confidence 4555668899999998654
No 499
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=20.96 E-value=3.4e+02 Score=25.37 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=49.0
Q ss_pred EEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeC------------------CceEEEEccccccCCCCceeEEE
Q psy9773 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQY------------------LILEVIQNKIENVELPEKVDIIV 113 (252)
Q Consensus 52 ~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~------------------~~i~~~~~d~~~~~~~~~fDlIv 113 (252)
+||=++=.-| .+ +..++..++. ...|- ..++++ +.. .++++.+|+|+
T Consensus 47 ~~~i~nd~fG--al--------~~~l~~~~~~--~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~-~~~~~~~d~vl 111 (378)
T PRK15001 47 PVLILNDAFG--AL--------SCALAEHKPY--SIGDSYISELATRENLRLNGIDESSVKFL--DST-ADYPQQPGVVL 111 (378)
T ss_pred CEEEEcCchh--HH--------HHHHHhCCCC--eeehHHHHHHHHHHHHHHcCCCcccceee--ccc-ccccCCCCEEE
Confidence 7999999999 66 5555543322 12344 122222 111 13346799997
Q ss_pred ecccccccCChhhHHHHHHHHhccccCCeEEEeecc
Q psy9773 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 114 ~~~~~~~l~~~~~~~~~l~~l~~~LkpgG~lv~~~~ 149 (252)
..+- -...-+...+..+.+.|.||+.++....
T Consensus 112 ~~~P----K~~~~l~~~l~~l~~~l~~~~~ii~g~~ 143 (378)
T PRK15001 112 IKVP----KTLALLEQQLRALRKVVTSDTRIIAGAK 143 (378)
T ss_pred EEeC----CCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 6332 2334677888999999999999886554
No 500
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=20.81 E-value=2e+02 Score=26.57 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=50.1
Q ss_pred CCCCCEEEEEcCCcCchhhhhccCccchHHHhhcCCCcEEEeeCCceE--EEEc-cccccCCC---CceeEEEecccccc
Q psy9773 47 IFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE--VIQN-KIENVELP---EKVDIIVSEWMGFY 120 (252)
Q Consensus 47 ~~~~~~VLDlGcGtG~~~ll~~~~v~~s~~~a~~g~~~v~gvD~~~i~--~~~~-d~~~~~~~---~~fDlIv~~~~~~~ 120 (252)
...+++|.=||+|+=+..+ +..+...|. +|++.+..... .... .+...... ...|+|+...
T Consensus 13 ~LkgKtVGIIG~GsIG~am--------A~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llL---- 79 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQ--------AQNLRDSGV-EVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLL---- 79 (335)
T ss_pred hhCcCEEEEEeEcHHHHHH--------HHHHHHCcC-EEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeC----
Confidence 4567899999998644444 555555664 56665431100 0000 01101111 5689997632
Q ss_pred cCChhhHHHHH-HHHhccccCCeEEEeecc
Q psy9773 121 LLHESMIDSVI-FARDKFLKPEGVMYPYKC 149 (252)
Q Consensus 121 l~~~~~~~~~l-~~l~~~LkpgG~lv~~~~ 149 (252)
+.... ..++ ..+...|+||.+|++++.
T Consensus 80 -Pd~~t-~~V~~~eil~~MK~GaiL~f~hg 107 (335)
T PRK13403 80 -PDEQQ-AHVYKAEVEENLREGQMLLFSHG 107 (335)
T ss_pred -CChHH-HHHHHHHHHhcCCCCCEEEECCC
Confidence 33333 3444 468899999999999875
Done!