RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9773
(252 letters)
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 51.8 bits (125), Expect = 9e-08
Identities = 27/99 (27%), Positives = 53/99 (53%)
Query: 143 VMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE 202
V+ I P + + F E E E + ++ ++ E +KK +EE++E
Sbjct: 370 VLPFLSIIFKHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKE 429
Query: 203 EEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+++K + ++EE E E+E++EE ++++ E EEE+EE
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 46.1 bits (110), Expect = 7e-06
Identities = 23/62 (37%), Positives = 44/62 (70%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ I + EKK E+E +E++ + K+++ +EEE+E++E+++E+E E+ E E EEEEE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Query: 225 EE 226
++
Sbjct: 472 KK 473
Score = 40.7 bits (96), Expect = 5e-04
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E+ F I + + + EEE++ ++ ++ +K E +K E E
Sbjct: 369 EVLPFLSIIF-KHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEK 427
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+E++++ +KK EEEEEE+E + +EEEE
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 30.3 bits (69), Expect = 0.93
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK 206
F EEE++E+++ EEE+ EEEEE +++K +EEE+++++
Sbjct: 434 AFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 29.9 bits (68), Expect = 1.2
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+EE E K+ + K+ E E++ EE K+KK + +++ + EE+E+
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 51.1 bits (122), Expect = 2e-07
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E + E + E +E E + + E +++EK + + G++EEEEEEE +++
Sbjct: 816 EGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEE 875
Query: 232 KNEEEEEEEEVLIKLEEEEEN 252
+ EEEEEEE EEEEEN
Sbjct: 876 EEEEEEEEE------EEEEEN 890
Score = 49.2 bits (117), Expect = 8e-07
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 18/94 (19%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE-------EEKKEEDEIEKEEG------ 217
E E + ++ E E E + + E E+E E K++E ++ G
Sbjct: 804 EGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDS 863
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E EEEEEEE ++++ EEEEEEEE EE EE
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEE-----EENEE 892
Score = 49.2 bits (117), Expect = 9e-07
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEE---EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
E+ E + ++ E+++E E+E E + K E+ + + + E+EE E EEE
Sbjct: 814 EHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEE 873
Query: 223 EEEEVVKQKKNEEEEEEEEVL 243
EEEE ++++ EEEEE EE L
Sbjct: 874 EEEEEEEEEEEEEEEENEEPL 894
Score = 49.2 bits (117), Expect = 1e-06
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN------ 219
E E + E ++E + E ++E E+E E++ E ++ E
Sbjct: 797 AEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGG 856
Query: 220 --------EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EEEEEEE ++++ EEEEEEEE EEE E
Sbjct: 857 GSDGGDSEEEEEEEEEEEEEEEEEEEEEEE-----EEENE 891
Score = 46.5 bits (110), Expect = 7e-06
Identities = 28/83 (33%), Positives = 40/83 (48%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
GE + + E E E E +E K E EE E E + E E ++EGE E EE E V+
Sbjct: 683 GEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVE 742
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
+ E E + EV + + +E
Sbjct: 743 DEGEGEAEGKHEVETEGDRKETE 765
Score = 46.5 bits (110), Expect = 8e-06
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
S E E++ E + E ++E+ V + + EEE++EE+E E+EE
Sbjct: 819 SETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEE 878
Query: 218 ENEEEEEEEVVKQKKNEEEEE 238
E EEEEEEE EE EE
Sbjct: 879 EEEEEEEEE-------EENEE 892
Score = 42.7 bits (100), Expect = 1e-04
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 170 GEEEKKEEDEIEEEENEEE-EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ E++ E EIE +E + + E ++ E E E E ++E EIE E E E+E E
Sbjct: 689 RKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ K+E E E + + E E E
Sbjct: 749 AEGKHEVETEGDRKETEHEGETE 771
Score = 42.7 bits (100), Expect = 1e-04
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE-EEEEVV 228
GE E EE E E+E E E E K + E + +E E + E E E +E E+E E + E
Sbjct: 730 GEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG 789
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ K +E E + E + E E+
Sbjct: 790 EMKGDEGAEGKVEHEGETEAGEK 812
Score = 41.9 bits (98), Expect = 2e-04
Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
G+ E++EE+E EEEE EEEEE EEEEEEEE +E +E E
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEE-------EEEEEEEENEEPLSLEWPE 900
Score = 41.1 bits (96), Expect = 3e-04
Identities = 26/81 (32%), Positives = 40/81 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E + E E E + E E +++ E E E E K++EDE E + GE+ E + +E +
Sbjct: 740 EVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEG 799
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K E E E + E + E
Sbjct: 800 KVEHEGETEAGEKDEHEGQSE 820
Score = 40.7 bits (95), Expect = 6e-04
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 8/54 (14%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
G + ++EE+E EEEE EEEEE EEEEEEE++ E+ + E E +++
Sbjct: 860 GGDSEEEEEEEEEEEEEEEEE--------EEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 40.4 bits (94), Expect = 7e-04
Identities = 27/80 (33%), Positives = 42/80 (52%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E K+ + + E E E E E + + E+E E E EE E ++EGE E E + EV +
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+E E E E + +E+E+
Sbjct: 760 DRKETEHEGETEAEGKEDED 779
Score = 39.2 bits (91), Expect = 0.002
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 11/68 (16%)
Query: 169 AGEEEKKEEDEIE----EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
A ++EK + + E EEEEE EEEEEEEE++EE+E E+EE E E
Sbjct: 845 AKQDEKGVDGGGGSDGGDSEEEEEEE-------EEEEEEEEEEEEEEEEEEENEEPLSLE 897
Query: 225 EEVVKQKK 232
+QK+
Sbjct: 898 WPETRQKQ 905
Score = 38.4 bits (89), Expect = 0.003
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE--IEKEEGENE-EEEEEE 226
E E EE E E+ E E + +++ E E + ++E E IE +E +++ E E EE
Sbjct: 655 AEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEE 714
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
V + + E E E+E I+ EE E
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGE 739
Score = 38.4 bits (89), Expect = 0.003
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE----EGENEE 221
E A E E + E E E E+E E E ++ + E+E E E + + E+E E E E+E
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEG 768
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E E E + + E + E+ +K +E E
Sbjct: 769 ETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
Score = 37.3 bits (86), Expect = 0.007
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E E EE E E E + + E E+E + E + EGE E + E
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGE---- 692
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ E E E +E K E E E
Sbjct: 693 QEGEGEIEAKEADHKGETEAE 713
Score = 37.3 bits (86), Expect = 0.007
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+G E ++E + + ENE E E+ ++ E+E E E + +E + + E E E E E
Sbjct: 662 ESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET 721
Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
+ +E E E + E+E
Sbjct: 722 EAEGTEDEGEIETGEEGEEVEDE 744
Score = 37.3 bits (86), Expect = 0.007
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E +E + E E EE E E E + + ++E E E ++ E+ ++ EGE E + E
Sbjct: 696 EGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEV 755
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
E +K E E E E K +E+E
Sbjct: 756 ETEGDRKETEHEGETEAEGKEDEDE 780
Score = 36.9 bits (85), Expect = 0.009
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE-EGENEEEEE 224
E+ ++ E E E EE + + + E E + E + E EI E +GE E E E
Sbjct: 639 EHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E K+ ++ E E EEV + E E E
Sbjct: 699 IE-AKEADHKGETEAEEVEHEGETEAE 724
Score = 36.5 bits (84), Expect = 0.012
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
GE E + +++ +E E + E+ + K ++ E + E + E + EK+E E + E + +
Sbjct: 765 EHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQAD 824
Query: 227 VVKQKKNEEEEE 238
+ K E+E
Sbjct: 825 DTEVKDETGEQE 836
Score = 36.1 bits (83), Expect = 0.017
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE--KKEEDEIEKEEGENEEEEEEEV 227
GE E K E E E + E E E + + +E+E+E E E+ E++ +EG + E E
Sbjct: 747 GEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGE 806
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
+ + +E E + E E ++
Sbjct: 807 TEAGEKDEHEGQSETQADDTEVKD 830
Score = 35.0 bits (80), Expect = 0.038
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVK-QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E + E E EE E E+E + + + K E E E ++KE + + E E +E+E+E ++
Sbjct: 726 TEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQA 785
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ E + +E K+E E E
Sbjct: 786 GEDGEMKGDEGAEGKVEHEGE 806
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 48.8 bits (117), Expect = 1e-06
Identities = 26/78 (33%), Positives = 50/78 (64%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
F E+E++EED +++E+ E++++ +++ ++ + +EE+ EEDE +E + EEE
Sbjct: 313 NFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372
Query: 223 EEEEVVKQKKNEEEEEEE 240
EEE+ K+KK+ E E
Sbjct: 373 EEEKEKKKKKSAESTRSE 390
Score = 46.1 bits (110), Expect = 8e-06
Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+ K+ D++++E ++++ EE+EEEEE +DE E+++ ++ EEEEE+V
Sbjct: 293 EDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLS 352
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E+EE+E+ EEEEE
Sbjct: 353 DEEEDEEDEDSDDEDDEEEEE 373
Score = 38.8 bits (91), Expect = 0.002
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E +++ + EE+E EEE+ V + E+EE++++ EE+E + + + EE+EE+
Sbjct: 305 EFEPDDDDNFGLGQGEEDEEEEEDGV----DDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + +EEEEEEE+ K + E
Sbjct: 361 EDSDDEDDEEEEEEEKEKKKKKSAES 386
Score = 36.9 bits (86), Expect = 0.008
Identities = 24/85 (28%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 172 EEKKEEDEIEEEENE-----EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ K E+E+ +EE E E E +++ + +EE++EEEE +E + ++ ++++
Sbjct: 255 DRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNF 314
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+ Q + +EEEEE+ V + EE+++
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDD 339
Score = 36.1 bits (84), Expect = 0.017
Identities = 18/83 (21%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E++++EED E ++ ++E + + EE +EE+E + + E+EE++++++ +
Sbjct: 286 EEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEE-DGVDDEDEEDDDDDLEE 344
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++++ + +EEE + ++E+
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDED 367
Score = 35.4 bits (82), Expect = 0.024
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 171 EEEKKEEDE---------------IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
EE KEE E EE++ EEE+ + + ++E E ++ + E
Sbjct: 261 EELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGE 320
Query: 216 EGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E EEE+ + ++ ++++ EEEE + L +EEE+
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Score = 30.0 bits (68), Expect = 1.4
Identities = 16/62 (25%), Positives = 41/62 (66%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ EE+ ++ E EEE+ + +E + +++++ ++E++E++EE+E EK++ ++ E
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Query: 226 EV 227
E+
Sbjct: 390 EL 391
Score = 28.8 bits (65), Expect = 3.3
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
+ EE++++ED +E++ EEEEE K+KK K+ E +
Sbjct: 349 VDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 27.7 bits (62), Expect = 8.3
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 204 EEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ K E+E+ KEE E ++ E E +++ + EEE++EEE K ++ +
Sbjct: 255 DRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLD 303
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 47.9 bits (115), Expect = 2e-06
Identities = 28/82 (34%), Positives = 51/82 (62%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A EE K +E E+E E E+++ + + ++EE ++ + +EK E E E++E+E
Sbjct: 62 AKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ 121
Query: 229 KQKKNEEEEEEEEVLIKLEEEE 250
KQ++ E++EEE E LI+ + +E
Sbjct: 122 KQQELEKKEEELEELIEEQLQE 143
Score = 40.5 bits (96), Expect = 4e-04
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E ++E I EE +E E +K++ E +EE + + E E E E NE ++ E+ + Q
Sbjct: 34 KEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQ 93
Query: 231 KKNEEEEEEEEVLIKLEEE 249
K+ E + + E+L K EEE
Sbjct: 94 KE-ENLDRKLELLEKREEE 111
Score = 39.8 bits (94), Expect = 8e-04
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +K E+E+E++E E E++ ++ + KEEE EE +++ E+E+ G EE +E ++++
Sbjct: 103 ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEK 162
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
+ EE E VLIK EEE
Sbjct: 163 VE-EEARHEAAVLIKEIEEE 181
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 44.6 bits (105), Expect = 2e-05
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE++ +E + E EE+EEV E E E++EE+ ++GE+ + E E +
Sbjct: 174 VDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERI 233
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+K+ EEEE EEEV+ E E E
Sbjct: 234 DKKQGEEEEMEEEVINLFEIEWEE 257
Score = 28.0 bits (62), Expect = 4.3
Identities = 18/81 (22%), Positives = 36/81 (44%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+EE E + + E+ + +++ +E + + D E+E E + EEE ++
Sbjct: 136 DEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEE 195
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ E L + EEEE
Sbjct: 196 VGSDSYGEGNRELNEEEEEEA 216
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 45.3 bits (107), Expect = 2e-05
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
++ EE+E EEE EEEEE ++++ + EEEE E+++EE+E+E + G EE E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496
Query: 233 NEEEEEEEE 241
E EE+ E
Sbjct: 497 EEPEEDAER 505
Score = 44.9 bits (106), Expect = 2e-05
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+E +EE+ +EEEE EEEEE ++ E+E EEEE ++E+E E+ E +N EEE E +
Sbjct: 437 QESEEEESVEEEEEEEEEEEEE----EQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Query: 232 KNEEEEEEEE 241
+ EE EE+
Sbjct: 493 DGDGEEPEED 502
Score = 43.0 bits (101), Expect = 8e-05
Identities = 32/66 (48%), Positives = 41/66 (62%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
+E E ++ +EEEEEEEE++EE E E+EEGE+EEEEEE EE E E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDG 496
Query: 247 EEEEEN 252
EE EE+
Sbjct: 497 EEPEED 502
Score = 43.0 bits (101), Expect = 9e-05
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EE +EE+E EEEE EEE+ E EEEE E +EE+E + + +EEE E
Sbjct: 441 EEESVEEEEEEEEEEEEEEQ--------ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Query: 230 QKKNEEEEEEEEV 242
EE EE+ E
Sbjct: 493 DGDGEEPEEDAER 505
Score = 38.7 bits (90), Expect = 0.002
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---EGE 218
E+ E ++EE+E EEEE EE+E +++ EEEEEE E E E E EG+
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGD 493
Query: 219 NEEEEEEEVVKQKKNEEEEEEE 240
+ EE EE +++ +E
Sbjct: 494 GDGEEPEEDAERRNSEMAGISR 515
Score = 37.2 bits (86), Expect = 0.006
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G + + + E + ++++EEE EEE++EE+E E+EE E+EEEE E+
Sbjct: 413 GTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGED--- 469
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
EEEEEE E EEE E
Sbjct: 470 ----EEEEEEVEADNGSEEEME 487
Score = 36.8 bits (85), Expect = 0.008
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE++EE+E E+E EEE E ++++ + E + E++ E E + E EE+ E
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNS 508
Query: 231 KKNEEEEEEEE 241
+ E
Sbjct: 509 EMAGISRMSEG 519
Score = 36.0 bits (83), Expect = 0.017
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE++EE E EEEE E+EEE ++ + EEE E E + + EE E + E +
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAG 512
Query: 231 KKNEEEEEEEEVLIKLEE 248
E ++ E
Sbjct: 513 ISRMSEGQQPRGSSVQPE 530
Score = 34.5 bits (79), Expect = 0.053
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E E +EE+E E +N EEE++ + + EE E+ E + G + E ++
Sbjct: 464 EEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPR 523
Query: 229 KQKKNEEEEEEE 240
E +EE
Sbjct: 524 GSSVQPESPQEE 535
Score = 33.7 bits (77), Expect = 0.076
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEE---------KKEEDEIEKEEGENEEEEEE 225
K++D EEE + +E +Q + + + ++ E+E E EEEEEE
Sbjct: 394 KQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEE 453
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++++ EEEE E+ + E E +N
Sbjct: 454 EEEEEEQESEEEEGEDEEEEEEVEADN 480
Score = 29.5 bits (66), Expect = 2.0
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 20/84 (23%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE--------------------NEEEEEEEV 227
EE + + K+++ EEEE+++ E E++ ++E EEEE
Sbjct: 385 EEVISKYAMKQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEES 444
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
V++++ EEEEEEEE EEE E
Sbjct: 445 VEEEEEEEEEEEEEEQESEEEEGE 468
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 45.1 bits (106), Expect = 2e-05
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 3/83 (3%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E +K EE +I+ EE ++ EE K+K + +++E EEKK+ +E++K E EN+ + EE
Sbjct: 1609 AEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE-- 1666
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
KK EE++++ E K EE+E+
Sbjct: 1667 -AKKAEEDKKKAEEAKKAEEDEK 1688
Score = 44.7 bits (105), Expect = 3e-05
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEE----EEEEKKEEDEIEKEEGENEEEEEEE 226
EEKK+ +E+++ E E + + ++ K EE+ EE +K EEDE + E +E EE +
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++ K +E EE+++ + EEEN
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKAEEEN 1728
Score = 42.4 bits (99), Expect = 1e-04
Identities = 29/87 (33%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEE---EEEEKKEEDEIEKEEGENEEEEEE-- 225
EE+KK+ +E ++ E +E++ + K + EE EE +KKE +E +K E + EEE
Sbjct: 1671 EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ + KK EE++++ K +EEE+
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKK 1757
Score = 40.9 bits (95), Expect = 5e-04
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 2/86 (2%)
Query: 169 AGEEEKKEEDEIE--EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
A E +KKE +E + EE + EEE K K + ++E EE+KK+ +E +K+E E ++ +
Sbjct: 1704 AEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLK 1763
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++KK EE +E+E +I+ E +EE+
Sbjct: 1764 KEEEKKAEEIRKEKEAVIEEELDEED 1789
Score = 40.5 bits (94), Expect = 7e-04
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 166 ENIAGEEEKKEEDE---------IEEEENEEEEEVK--QKKNKEEEEEEEEKKEEDEIEK 214
I EE KK E+E E EE ++ EE+K +++NK + EE +K EED+ +
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
Query: 215 EEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE + EE+E++ + K E EE ++ +K +E EE
Sbjct: 1678 EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE 1714
Score = 40.1 bits (93), Expect = 0.001
Identities = 31/85 (36%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 169 AGEEEKKEEDEI--EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
A E+EKK + + E EE ++ EE+K+K+ +E+++ EE KK E+E + + E ++E EE+
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
K ++ +++EEE++ + L++EEE
Sbjct: 1743 KKKAEEAKKDEEEKKKIAHLKKEEE 1767
Score = 37.8 bits (87), Expect = 0.004
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E EE K+ +E + + EE K+ + EE + +EE +++ EE + EE +
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
+ + KK EEE+++ E L K E EE
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEE 1645
Score = 37.8 bits (87), Expect = 0.005
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + EE+ + EE + EE++ K ++ K+ EE+E++ E + E EE + EE ++
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Query: 226 EVVKQKKNEEE--EEEEEVLIKLEE 248
+ ++KK EE + EEE IK EE
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEE 1734
Score = 36.3 bits (83), Expect = 0.015
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E +KK E+ + +E +++ E +KK E ++ E KK+ DE +K E + +E ++
Sbjct: 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
Query: 229 KQKKNEEEEEEEEV 242
+ KK +E ++ EE
Sbjct: 1532 EAKKADEAKKAEEK 1545
Score = 36.3 bits (83), Expect = 0.017
Identities = 22/81 (27%), Positives = 46/81 (56%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE KK+ D +++ E ++ + K + E +E + E++ E E + EE +++ +
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
KK EE+++ +E K EE+++
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKK 1405
Score = 35.5 bits (81), Expect = 0.029
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 172 EEKKEEDEIE---EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EEKK+ DE + EE+ ++ +E+K+ +++ +E +KK E++ + +E + + EE ++
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+ KK EE ++ E K EE
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEE 1468
Score = 35.1 bits (80), Expect = 0.031
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 171 EEEKKEEDEIE--EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE+KK+ DE++ ++ +E K+K ++++ +E +KK E+ + +E + + EE ++
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+ KK EE ++ + K EE
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEE 1481
Score = 35.1 bits (80), Expect = 0.033
Identities = 22/77 (28%), Positives = 47/77 (61%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E +E KK+ +E +++ +E ++ + KK +E ++ EE K+ DE +K E + +E +
Sbjct: 1481 EAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Query: 226 EVVKQKKNEEEEEEEEV 242
+ ++KK +E ++ EE+
Sbjct: 1541 KAEEKKKADELKKAEEL 1557
Score = 34.7 bits (79), Expect = 0.043
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E +KK E+ + +E +++ E +KK +++ EE K+ E K E E +E E
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 229 KQKKNEEEEEEEE 241
++ + E+++EE
Sbjct: 1364 EKAEAAEKKKEEA 1376
Score = 34.7 bits (79), Expect = 0.043
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEE--EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
KK+ DE ++ EE ++ +E K+K + ++ +E +KK E+ + EE + + EE ++
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ KK EE ++ + K EE +
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAK 1496
Score = 34.3 bits (78), Expect = 0.066
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E +K EE + + EE ++ +E K+K + ++ +E +KK E+ +K + + E ++
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ K EE ++ + K EE ++
Sbjct: 1513 DEAKKAEEAKKADEAKKAEEAKK 1535
Score = 34.0 bits (77), Expect = 0.091
Identities = 23/83 (27%), Positives = 48/83 (57%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E++K +E + + EE ++ +E K+K + ++ EE +KK E+ + +E + + EE ++
Sbjct: 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ KK EE +++ K E +
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAK 1509
Score = 33.6 bits (76), Expect = 0.10
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E +E KK+ +E +++ + +++ ++ K E + E + DE E E + E E++
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 226 EVVKQKKNEEEEEEEEVLIKLEE 248
+ +KK + +++ E K +E
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADE 1395
Score = 33.2 bits (75), Expect = 0.14
Identities = 21/82 (25%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK-EEDEIEKEEGENEEEEEEEV 227
A EE+ + ++ +EE ++ + K+K ++++ +E +KK EED+ + +E + +++
Sbjct: 1361 AAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA 1420
Query: 228 VKQKKNEEEEEEEEVLIKLEEE 249
+ KK EE+++ + K EE
Sbjct: 1421 DEAKKKAEEKKKADEAKKKAEE 1442
Score = 33.2 bits (75), Expect = 0.14
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 171 EEEKKEEDEIEEEEN----EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E KK+ DE ++ E +E ++ ++ K +E ++ EEKK+ DE++K E + EE+++
Sbjct: 1506 AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
Query: 227 VVKQKKNEEEE 237
+ KK EE++
Sbjct: 1566 AEEAKKAEEDK 1576
Score = 33.2 bits (75), Expect = 0.15
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE + EE EE ++ + + KK +E + + EE K+ +E +K+ + +++E EE K
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Query: 231 KKNEEEEEEEEV----LIKLEEEEE 251
++ ++ EEE ++ K EE++
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDK 1674
Score = 33.2 bits (75), Expect = 0.16
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+KK ++ + EE ++ +E K+K + ++ +E +KK E+ +K + ++ EE + +
Sbjct: 1287 EEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAE 1346
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
E E + EE+ E
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAE 1367
Score = 32.8 bits (74), Expect = 0.21
Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 171 EEEKKEEDEIEE--EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-EEGENEEEEEEEV 227
EE KK+ D ++ EE ++ +E K+K +++++ +E KK +K +E + + EE+++
Sbjct: 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433
Query: 228 VKQKKNEEEEEEEEVLIKLEEE 249
+ KK EE ++ + K EE
Sbjct: 1434 DEAKKKAEEAKKADEAKKKAEE 1455
Score = 32.4 bits (73), Expect = 0.25
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E +K +E + + EE ++ EE K+K + ++ +E +KK E+ + +E + + EE ++
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1499
Query: 229 KQ-KKNEEEEEEEEVLIKLEEEEE 251
+ KK E +++ + K EE ++
Sbjct: 1500 DEAKKAAEAKKKADEAKKAEEAKK 1523
Score = 32.0 bits (72), Expect = 0.32
Identities = 22/83 (26%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE--EEVV 228
EE KK+ DE ++ +++ + KK +E ++ +E KK E+ + +E + EE++ +E+
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
K ++ ++ EE+++ + EE+
Sbjct: 1553 KAEELKKAEEKKKAEEAKKAEED 1575
Score = 31.6 bits (71), Expect = 0.45
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
I EE +K ++ + EE ++ +E K+ + K++ +E ++K EE + E + EE +++
Sbjct: 1272 IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1331
Query: 228 VKQKKNEEEEEEEEVLIKLEEE 249
KK EE ++ K E E
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAE 1353
Score = 31.3 bits (70), Expect = 0.52
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVK---QKKNKEEEEEEEEKKEEDEIEKEE 216
E K E +E KK E++ + +E ++ EE+K +KK EE ++ EE K + EE
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+ EE E V + EE++ + E K EE +
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
Score = 31.3 bits (70), Expect = 0.56
Identities = 19/83 (22%), Positives = 42/83 (50%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
A E + DE E E + E K+K+ +++ + +KK E++ + +E + + EE+++
Sbjct: 1347 AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
+ K +++ K + EE
Sbjct: 1407 ADELKKAAAAKKKADEAKKKAEE 1429
Score = 31.3 bits (70), Expect = 0.64
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 11/91 (12%)
Query: 172 EEKKEEDEIEEEEN----EEEEEVKQKKNKEEEE-------EEEEKKEEDEIEKEEGENE 220
EEKK+ DE+++ E EE+++ ++ K EE++ EE +K EE IE+ E
Sbjct: 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
Query: 221 EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE++ + + KK EE + + E L K EEE++
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633
Score = 30.9 bits (69), Expect = 0.70
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E+ K E +E KK E++ + +E +++ E +K ++ +++ EE KK+ D +K+ E
Sbjct: 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
Query: 220 EEEEEEEVVKQKKNEEEEEEEE 241
++ E + + +E E E
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAE 1363
Score = 30.9 bits (69), Expect = 0.71
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK--EEDEIEKEEGENEEEEEEEVVKQKK 232
++ +E ++ E EEV + +E++ + EE K EE +I+ EE + EEE+++V + KK
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
Query: 233 NEEEEEEEEVLIKLEEEE 250
E EE+++ +K EEE
Sbjct: 1641 KEAEEKKKAEELKKAEEE 1658
Score = 30.1 bits (67), Expect = 1.4
Identities = 23/63 (36%), Positives = 42/63 (66%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+KK+ +E +++E E+++ KK +E++ EE K++E IE+E E +E+ EV K+
Sbjct: 1740 EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
Query: 231 KKN 233
K+
Sbjct: 1800 IKD 1802
Score = 29.3 bits (65), Expect = 2.1
Identities = 18/92 (19%), Positives = 50/92 (54%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E + +E + + I+ EE + +E+K+ + K++ +E ++ +E+ + ++ + +
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE ++ + K+K E +++ + K EE ++
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 29.0 bits (64), Expect = 3.6
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-EEGENEEEEEEEV 227
A E +KK E+ + EE +++ E +K ++ +++ EE KK ++ +K EE + + +E ++
Sbjct: 1446 ADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA 1505
Query: 228 VKQKKNEEEEEEEEVLIKLEE 248
+ KK +E ++ E K +E
Sbjct: 1506 AEAKKKADEAKKAEEAKKADE 1526
Score = 29.0 bits (64), Expect = 3.6
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 7/96 (7%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQ----KKNKEEEEEEEEKKEEDEIEKE 215
E K E +E KK E+ + +E ++ EE K+ KK +E ++ EE+KK E+ + E
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Query: 216 EGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +N + E K+ EE EEV+ EEE++
Sbjct: 1574 EDKNMALRKAEEAKKA---EEARIEEVMKLYEEEKK 1606
Score = 27.8 bits (61), Expect = 6.6
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+DE + ++ + ++ N+ +E EE + +E +K E EE + +KK E+
Sbjct: 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDA 1127
Query: 237 EEEEEV 242
+ EE
Sbjct: 1128 RKAEEA 1133
Score = 27.4 bits (60), Expect = 9.8
Identities = 18/87 (20%), Positives = 39/87 (44%)
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
+ + +E DE EE + EE K+ + + EE + ++ + + E E +
Sbjct: 1076 YKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARK 1135
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEE 250
E+ K ++ + E+ + V I + E+
Sbjct: 1136 AEDARKAEEARKAEDAKRVEIARKAED 1162
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 44.3 bits (105), Expect = 3e-05
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
EE + +E+E EE+ + ++ + E+ EEE + ++ E + + E ++
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESAS 426
Query: 235 EEEEE 239
+ + E
Sbjct: 427 DSDSE 431
Score = 42.8 bits (101), Expect = 8e-05
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+ +E++E+E+EEEE+ + +EE E+ EE+ + + + + + K K
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Query: 236 EEEEEE 241
+ + E
Sbjct: 426 SDSDSE 431
Score = 37.4 bits (87), Expect = 0.005
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+E+E+EEE++ DE E+EEGE+ EEE + + +E + ++E
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Score = 35.9 bits (83), Expect = 0.016
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E+E++E+ E EE E E+ ++ E+ E + + + + E + +
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 33.6 bits (77), Expect = 0.089
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
EEE++ DE EEEE E+ EE + ++ E D K + E+ + + E
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 33.2 bits (76), Expect = 0.11
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
EE++ +E E EE E+ EEE + +++ E + + + +E ++ + E
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
Score = 32.8 bits (75), Expect = 0.14
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ +E +++ K+ + + E+ +EDE E+EE ++E EEEE ++ + E+
Sbjct: 348 STKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDG 404
Score = 27.8 bits (62), Expect = 6.0
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
E+ E E EE+ + E+ E + E + ++E + +
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 445
Score = 44.2 bits (105), Expect = 3e-05
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 94 EVIQNKIENVELPEKVDIIVSEWMGFY----LLHESMIDSVIFARDKFLKPEGVMYPYKC 149
+I + + + PEK DI+VSE +G + L E + D +FLKP+G+ P
Sbjct: 244 TIISSDMREWKGPEKADILVSELLGSFGDNELSPECL-DGA----QRFLKPDGISIPQSY 298
Query: 150 ILHSAPSYSPEIFKFWENI 168
+ AP SP K ++ +
Sbjct: 299 TSYLAPISSP---KLYQKV 314
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 44.0 bits (104), Expect = 4e-05
Identities = 15/73 (20%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+++G++ ++ E ++ + +++ + K + EE E K +E+++++EE E +++E+
Sbjct: 360 TDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
Query: 225 EEVVKQKKNEEEE 237
+ K+K+ ++E
Sbjct: 420 ADEDKEKRQKDER 432
Score = 33.2 bits (76), Expect = 0.13
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 171 EEEKKEEDEIEEEENE-EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
E K E D EE E + +EE++KQ++N+++++E+ ++ +E + E
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 32.1 bits (73), Expect = 0.29
Identities = 12/37 (32%), Positives = 29/37 (78%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
E K +E+++++EENE++++ + ++KE+ +++E KK
Sbjct: 398 AEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 30.1 bits (68), Expect = 1.1
Identities = 17/80 (21%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EE K ++ ++ +E + KK ++ ++ E K+E + +E E + +EE+ ++
Sbjct: 354 EEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEA-EAKAKEEKLKQEEN 412
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+ +++E+ +E K +++E
Sbjct: 413 EKKQKEQADEDKEKRQKDER 432
Score = 27.5 bits (61), Expect = 7.2
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
K +E +E K+ + K+ GE ++E + + E + +EE L + E E++
Sbjct: 366 KRQELLKEYNKKLQDYTKKLGEVKDETDAS-----EEAEAKAKEEKLKQEENEKKQ 416
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 43.5 bits (102), Expect = 6e-05
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 128 DSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEI----EEE 183
D++ +D +K + P+ S S I F+ I G+ E + D I
Sbjct: 79 DAIRMGKDTSVKIKQRTCPFHKEGSSFEMGSKNITCFYP-IHGKAEIGDLDMIIIKRRRA 137
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+ EE++ + N ++++E++ E+D+ E+++ E EEEEEE +K +E+EE+E
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE--IKGFDDEDEEDE 191
Score = 36.9 bits (85), Expect = 0.010
Identities = 19/51 (37%), Positives = 35/51 (68%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+E++ E+D+ EE++ EEEEE ++ K ++E+EE+E E+ EK E + +
Sbjct: 157 DEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
Score = 36.6 bits (84), Expect = 0.011
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+N +++ ++EDE +++E ++EEE EEEEEE + ++++ E E GE+ E+
Sbjct: 149 DNFVIDDDDEDEDEDDDDEEDDEEE-------EEEEEEIKGFDDEDEEDEGGEDFTYEKS 201
Query: 226 EVVKQK--KNEEEEEEEEVLIKLEEEEE 251
EV K K E ++V K++E E
Sbjct: 202 EVDKTDCFKFIEAGAGDDVFDKIDEAFE 229
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 43.2 bits (102), Expect = 8e-05
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W E+ D E E+ + + +E+EEEEEE+ E++ KE ++EE EE
Sbjct: 361 WTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEE 420
Query: 225 EEVVKQKKN 233
++V + ++
Sbjct: 421 DDVESKYED 429
Score = 33.6 bits (77), Expect = 0.087
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+ + +DE EE+E EEEEE +E+E K+ D+ E EE + E + E+
Sbjct: 382 EDANTERDDEEEEDEEEEEEE--------DEDEGPSKEHSDDEEFEEDDVESKYEDSDGN 433
Query: 230 Q 230
Sbjct: 434 S 434
Score = 33.6 bits (77), Expect = 0.11
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E+ E + EEEE+EEEEE EE+E+E KE + E+ E ++ E + E+
Sbjct: 382 EDANTERDDEEEEDEEEEE-------EEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNS 434
Score = 32.0 bits (73), Expect = 0.29
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 199 EEEEEEEKKEEDEIEKEEGENEEEEEEEV---VKQKKNEEEEEEEEVLIKLEEEEEN 252
E E+ E + E+EE E EEEEE+E K+ ++EE EE++V K E+ + N
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGN 433
Score = 31.6 bits (72), Expect = 0.44
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
N ++E++E++E EEEE+E+E K+ + EE EE++ + + ++ +
Sbjct: 384 ANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
Score = 30.9 bits (70), Expect = 0.70
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
A E EE+E EEEE EE+E+ K ++EE EE E + E +G
Sbjct: 384 ANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/87 (26%), Positives = 51/87 (58%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ E +KKE ++ E +++++EE + + ++E+ ++E + + E +KE ++ E+EE
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEE 136
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E + K +E+ +EE+ + EEE
Sbjct: 137 EKDEAAKKAKEDSDEELSEEDEEEAAE 163
Score = 40.0 bits (94), Expect = 6e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
GE E D+ E + E+EE K + K+ +E+ +E+ E++ E+ E E E E+E
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 39.6 bits (93), Expect = 7e-04
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + +++ EE+E E EE+E+ ++ + + E ++E E EDE EK+E + +E+
Sbjct: 90 QGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Query: 226 EVVKQKKNEEEEEEEEVLIKLEE 248
+ +++EEE EEE +E
Sbjct: 150 DEELSEEDEEEAAEEEEAEAEKE 172
Score = 37.7 bits (88), Expect = 0.003
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
WE E+ E + I+ E ++E E E+EEE+++ + E + E EE+E
Sbjct: 104 WEVEEDEDSDDEGEWIDVESDKEIESSD-----SEDEEEKDEAAKKAKEDSDEELSEEDE 158
Query: 225 EEVVKQKKNEEEEE 238
EE ++++ E E+E
Sbjct: 159 EEAAEEEEAEAEKE 172
Score = 33.9 bits (78), Expect = 0.056
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 170 GEEEKKEEDE-IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
GEEE + +E E +EEE K+K+ ++ E +++ EE+E E EE E+ ++E E +
Sbjct: 61 GEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWID 120
Query: 229 KQKKNEEEEEEEE 241
+ E E + E
Sbjct: 121 VESDKEIESSDSE 133
Score = 28.1 bits (63), Expect = 4.2
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE---EEKKEEDEIEK 214
E+ E EDE E++E ++ + + EE+EE EE++ E E EK
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 26.9 bits (60), Expect = 9.7
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
E E KK +++ +EE +EE+EE + +EE E E+EK E
Sbjct: 135 EEEKDEAAKKAKEDSDEELSEEDEE--EAAEEEEAEAEKEKASELA 178
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 42.1 bits (99), Expect = 1e-04
Identities = 19/80 (23%), Positives = 41/80 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ E+ E+ E+ ++E E + K ++ E+ K+ +E +K+ E + ++ E +
Sbjct: 76 QAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAK 135
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
+ E E++ +E K EEE
Sbjct: 136 AEAEAEKKAKEEAKKQAEEE 155
Score = 41.4 bits (97), Expect = 3e-04
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
K E+ E E+ E+ +QK+ ++ E+ K+ ++ K+ E +++ EE KQ
Sbjct: 72 KLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Query: 234 EEEEEEEEVLIKLEEE 249
+ + E E K +EE
Sbjct: 132 AKAKAEAEAEKKAKEE 147
Score = 36.4 bits (84), Expect = 0.010
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
++K + +E + + E++ ++ + + E+ +K+ E E+ + E+ + ++K
Sbjct: 58 QKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEK 117
Query: 232 KNEEEE----EEEEVLIKLEEEEE 251
+ + EE + E K E E E
Sbjct: 118 QKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 36.0 bits (83), Expect = 0.012
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 166 ENIAGEEEKKEEDE---IEEEENEEEEEVKQKKNKE----EEEEEEEKKEEDEIEKEEGE 218
+ A E+ K+ ++ EE+ ++ EE K K+ E E E E+K +E+ ++ E E
Sbjct: 96 QRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEE 155
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + E +KK E +++ E K + E +
Sbjct: 156 AKAKAAAE--AKKKAAEAKKKAEAEAKAKAEAK 186
Score = 35.2 bits (81), Expect = 0.024
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E ++ E+ + E+ KQ + K+++ EE + K+ E + + E++ +E K++
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQA 152
Query: 233 NEEEEEEEEVLIKLEEEE 250
EE + + K + E
Sbjct: 153 EEEAKAKAAAEAKKKAAE 170
Score = 33.3 bits (76), Expect = 0.11
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKN--KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE K + E + E E K+ K K++ EEE + K E +K+ E +++ E E
Sbjct: 121 AEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ + + + + EE K E +
Sbjct: 181 AKAEAKAKAKAEEAKAKAEAAKA 203
Score = 32.5 bits (74), Expect = 0.16
Identities = 12/80 (15%), Positives = 43/80 (53%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A +++++ ++E+ +++ +Q + E++ E+ ++++ ++ E ++ E+
Sbjct: 52 ANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAA 111
Query: 229 KQKKNEEEEEEEEVLIKLEE 248
KQ + ++++ EE + E
Sbjct: 112 KQAEEKQKQAEEAKAKQAAE 131
Score = 29.8 bits (67), Expect = 1.5
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 169 AGEEEKKEEDEI-----EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
A EE K + E + + E E K K + + + EE K + E K + E
Sbjct: 152 AEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAA 211
Query: 224 EEEVVKQKKNEEEEE 238
+ E E E
Sbjct: 212 KAEAEAAAAAAAEAE 226
Score = 28.6 bits (64), Expect = 3.3
Identities = 10/61 (16%), Positives = 34/61 (55%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLE 247
++ + + +++ ++E++ + ++E++ E E++ E +QK+ E+ E+ + E
Sbjct: 49 AQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE 108
Query: 248 E 248
+
Sbjct: 109 Q 109
Score = 28.3 bits (63), Expect = 4.7
Identities = 10/80 (12%), Positives = 38/80 (47%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+ + +++ K+++ ++++ E++ ++ E + E+ +E E+ ++
Sbjct: 45 PGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Query: 233 NEEEEEEEEVLIKLEEEEEN 252
+ E+ ++ K ++ EE
Sbjct: 105 KQAEQAAKQAEEKQKQAEEA 124
Score = 27.5 bits (61), Expect = 6.4
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE-KEEGENEEEEE 224
E A E + E+ EE + + EEE K K E +++ E K++ E E K + E + + +
Sbjct: 131 EAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Query: 225 EEVVKQKKNEEEE 237
E K K +
Sbjct: 191 AEEAKAKAEAAKA 203
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 41.7 bits (98), Expect = 2e-04
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ- 230
+E+++ +E+++++ E+E +KQ + KE +E+KK+ +E K+ +++ EE K
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLE-KERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAA 142
Query: 231 ----KKNEEEEEEEEVLIKLEEEE 250
K E E + K E
Sbjct: 143 AAAKAKAEAEAKRAAAAAKKAAAE 166
Score = 40.2 bits (94), Expect = 7e-04
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ +E+ + +E++ EE + KQ +E ++ E+++ + +K++ E ++
Sbjct: 72 KSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAAL-- 129
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
KQK+ EE + K + E E
Sbjct: 130 KQKQAEEAAAKAAAAAKAKAEAE 152
Score = 38.6 bits (90), Expect = 0.002
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 166 ENIAGEEEKKEEDE----IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+ A E+E+ ++ E +E+ ++ EE ++ ++++ EE + K + E E
Sbjct: 94 QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA 153
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+ K+ E +++ E K E
Sbjct: 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
Score = 36.3 bits (84), Expect = 0.012
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Query: 166 ENIAGEEEKKEEDE-----IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
E +A +E+KK+ +E +++ EE K + + E E K+ +K E +
Sbjct: 109 ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAK 168
Query: 221 EEEEEEVVKQKKNEEEEE-EEEVLIKLEEEEE 251
++ E E K+ E +++ E E K E +
Sbjct: 169 KKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAK 200
Score = 34.8 bits (80), Expect = 0.038
Identities = 14/76 (18%), Positives = 41/76 (53%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
++ + ++++ + +Q+K KE+++ EE ++++ ++ + E+E ++K+ E
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 235 EEEEEEEVLIKLEEEE 250
E ++ + K EE
Sbjct: 122 EAAKQAALKQKQAEEA 137
Score = 34.4 bits (79), Expect = 0.040
Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ A E ++K+ E E + E+E + ++ K++ EE ++ + + EE +
Sbjct: 86 QQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE---AAAKAA 142
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEE 249
K K E + K E
Sbjct: 143 AAAKAKAEAEAKRAAAAAKKAAAE 166
Score = 34.4 bits (79), Expect = 0.052
Identities = 12/61 (19%), Positives = 37/61 (60%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+++ K++E+++ E+ ++ + ++E + E+E +++K + EE ++ +K ++ EE
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Query: 252 N 252
Sbjct: 137 A 137
Score = 30.9 bits (70), Expect = 0.59
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE + + + E E + K+ E ++K E + +K E +++ E E +
Sbjct: 135 EEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAK 194
Query: 231 KKNEEEEEEEE 241
E +++ E
Sbjct: 195 AAAEAKKKAEA 205
Score = 30.2 bits (68), Expect = 1.0
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
E+ +Q++ + EE+ KK+E + +E + + E+E + K+ E+E + K
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQE---RLKQLEKERLAAQEQKK 118
Query: 246 LEEEEEN 252
EE
Sbjct: 119 QAEEAAK 125
Score = 27.5 bits (61), Expect = 8.2
Identities = 12/61 (19%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
V ++ N+++++++ K+ E++ +K+E + EE +++ +++ ++ E+E +L +E
Sbjct: 60 VVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKE----RLAAQE 115
Query: 251 E 251
+
Sbjct: 116 Q 116
Score = 27.1 bits (60), Expect = 9.9
Identities = 14/73 (19%), Positives = 28/73 (38%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A KK E +++ E + + K++ E E K E +K+ +++
Sbjct: 156 AAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEA 215
Query: 229 KQKKNEEEEEEEE 241
K+K E +
Sbjct: 216 KKKAAAEAKAAAA 228
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 41.5 bits (98), Expect = 2e-04
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+++ EEEE++ + +E +EE +EKKEE + E+ E + + EE Q+K EE+E +
Sbjct: 261 VDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE---QRKLEEKERK 317
Query: 240 EE 241
++
Sbjct: 318 KQ 319
Score = 37.6 bits (88), Expect = 0.004
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
EV +K +K EEEEE+ + E E++E E +E++EE+ ++++ + + E KLEE
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQE-EAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 249 EE 250
+E
Sbjct: 314 KE 315
Score = 34.9 bits (81), Expect = 0.025
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-EEGENEEEE 223
EEE+K EEE EE +E K++K KEE E + K +E K EE E +++
Sbjct: 267 EEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQA 320
Score = 30.3 bits (69), Expect = 0.97
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 160 EIFKFWENIAGEE--EKKEEDEIEEEENEEEEEV--KQKKNKEEEEEEEEKK 207
+I K E EE EKKEE + EE E + + +Q+K +E+E +++ +K
Sbjct: 271 KILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 40.9 bits (96), Expect = 2e-04
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E KK +D+ E E +EE K+ N E++E++ + ++EDE +EE E E+EE + +++
Sbjct: 50 EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Query: 232 KNEEEEEEEE 241
E+ E E
Sbjct: 110 TEEKTESNVE 119
Score = 40.9 bits (96), Expect = 2e-04
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
++E E +E++EEE E ++ + E+E+EE +EE+E E EE ++E E+E K
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE-SSDENEKETEEK 113
Query: 230 QKKNEEEEEEE 240
+ N E+E
Sbjct: 114 TESNVEKEITN 124
Score = 40.1 bits (94), Expect = 4e-04
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ ++ +E EE EEE+E ++KE++ + E++ EE E E EE + E +E
Sbjct: 47 DEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106
Query: 226 EVVKQKKNEEEEEEE 240
E ++K E E+E
Sbjct: 107 EKETEEKTESNVEKE 121
Score = 39.7 bits (93), Expect = 5e-04
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E A + + +E EIEE + EE+E + +++ + E+E +E +E +EE E +E E
Sbjct: 48 EQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Query: 226 EVVKQKKNEEEEEEEE 241
+ ++K E+E
Sbjct: 108 KETEEKTESNVEKEIT 123
Score = 39.3 bits (92), Expect = 8e-04
Identities = 28/84 (33%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEE---EEEKKEEDEIEKEEGENEEEEEEEVV 228
++ DE E ++++++E + ++ KEEE+E E+K+++ + EKE+ E+EEE EEE
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+ E+E EE+ +E+E N
Sbjct: 101 ESSDENEKETEEKTESNVEKEITN 124
Score = 39.3 bits (92), Expect = 8e-04
Identities = 23/78 (29%), Positives = 45/78 (57%)
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
F+ + ++ +E E ++ +++E E+++ K +E+E E KE+ ++E E EEE
Sbjct: 35 FFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Query: 224 EEEVVKQKKNEEEEEEEE 241
EE ++ +E E+E EE
Sbjct: 95 NEEEDEESSDENEKETEE 112
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
+ + ++EDE EEENEEE+E +N++E EE+ E E EI +
Sbjct: 81 KGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
Score = 36.6 bits (85), Expect = 0.006
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +K ++ E E E +EEE + ++++E++ + +KE++E E+E E +EE +E K+
Sbjct: 50 EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Query: 231 KKNEEEEEEEEVLIK 245
+ + E E+ +
Sbjct: 110 TEEKTESNVEKEITN 124
Score = 36.3 bits (84), Expect = 0.008
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ A E+E K+ D+ E E EE +E +++ E++E++ E+++ E E EE EEE
Sbjct: 43 QAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESE----EENEEE 98
Query: 226 EVVKQKKNEEEEEEEEV 242
+ +NE+E EE+
Sbjct: 99 DEESSDENEKETEEKTE 115
Score = 27.8 bits (62), Expect = 4.4
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE-------EEEVVKQKKNEEEEEEEEVLI 244
+ +E+E ++ +++ E EE + EE+E E++ +K++EE EEE E
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 245 KLEEEEE 251
+ +E
Sbjct: 100 EESSDEN 106
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 41.6 bits (98), Expect = 2e-04
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E+ E E +E+++ E+ E EE+K E + KEE + + E + + + E
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 237 EEEEEVLIKLEEEEEN 252
+ EEEE
Sbjct: 61 KPAASGEGGGGEEEEE 76
Score = 41.2 bits (97), Expect = 3e-04
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE-EDEIEKEEGENEEEEEEEVVK 229
E + E+ + +E+ +++ E + +EE + + EI++ E +E E +
Sbjct: 6 EALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAAS 65
Query: 230 QKKNEEEEEEEE 241
+ EEEEEE
Sbjct: 66 GEGGGGEEEEEE 77
Score = 35.8 bits (83), Expect = 0.018
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVK--QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EEEK E D ++EE ++ + E+ ++ E E + E E+EE E + E E
Sbjct: 28 EEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAEAAEFRA 87
Query: 229 KQKKNEEEEEEE 240
+ ++ EE
Sbjct: 88 YLRGGDDALAEE 99
Score = 33.9 bits (78), Expect = 0.060
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+EK E EEE E + +K++ +K + E + ++ DE+E + + E E ++
Sbjct: 20 EDEKLAE---AEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEE 76
Query: 231 KKNEEEEEEEEVL 243
+ E E L
Sbjct: 77 EAKAEAAEFRAYL 89
Score = 32.3 bits (74), Expect = 0.22
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVK--QKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+ +E+ E +E + E + +EE+ + EE +E + + E G EEE
Sbjct: 15 LRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEE 74
Query: 223 EEEEVVKQKKNEE 235
EEE + +
Sbjct: 75 EEEAKAEAAEFRA 87
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 40.4 bits (95), Expect = 3e-04
Identities = 20/83 (24%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 171 EEEKKEEDEIEEE---ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
E KK++ E+ EE +E EE ++ K K+++ ++++ K++D+ + ++ + E+++E+
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
+ K + + E L L E +
Sbjct: 118 AEDKLEDLTKSYSETLSTLSELK 140
Score = 39.3 bits (92), Expect = 5e-04
Identities = 16/71 (22%), Positives = 45/71 (63%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
D E ++++E+ ++ K ++E EE++K + + +K + + +++++++ K+ E++
Sbjct: 54 DAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Query: 238 EEEEVLIKLEE 248
+E+E KLE+
Sbjct: 114 DEKEAEDKLED 124
Score = 34.7 bits (80), Expect = 0.021
Identities = 13/65 (20%), Positives = 35/65 (53%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
EI K + +++ K + + +++ +++++ K K ++ E+++EK+ ED++E
Sbjct: 70 EIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSY 129
Query: 220 EEEEE 224
E
Sbjct: 130 SETLS 134
Score = 33.1 bits (76), Expect = 0.075
Identities = 11/63 (17%), Positives = 37/63 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE++K + + ++ + +++++ +K +K++++ E++ ++E E + E+ E + +
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSE 138
Query: 231 KKN 233
K
Sbjct: 139 LKP 141
Score = 28.5 bits (64), Expect = 2.4
Identities = 11/61 (18%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W+ +++K ++ + +++++ K K++E+E E+K E+ E + E
Sbjct: 86 WKKKKSKKKKDKDKD------KKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSEL 139
Query: 225 E 225
+
Sbjct: 140 K 140
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/64 (17%), Positives = 36/64 (56%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
K +E + KK++ + ++++++++++ K+ E+++E+E + + +++ K E
Sbjct: 76 KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Query: 223 EEEE 226
E
Sbjct: 136 LSEL 139
Score = 27.3 bits (61), Expect = 5.8
Identities = 17/59 (28%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 198 EEEEEEEEKKEE--DEIEKEEGENEEEEE--EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E ++KK+E +EIEK + E EE+++ + K KK ++++++++ K ++ E+
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 27.0 bits (60), Expect = 8.4
Identities = 10/56 (17%), Positives = 34/56 (60%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E I +++ EE + + + ++ ++ K K ++++++++K E+ + ++ E + E+
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 41.1 bits (97), Expect = 4e-04
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+E E +E EEE + E E + K ++E+E +E+ + EE E+ ++ E+ +
Sbjct: 227 KETSETEEREEETDVEIETTSETK-GTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEI 285
Query: 232 KNEEEEEE 239
E+++EE
Sbjct: 286 LKEKKDEE 293
Score = 40.8 bits (96), Expect = 5e-04
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEE------EEEEKKEEDEIEKEEGENEEEEEE 225
EE++EE ++E E E + KQ++ EE EE+E ++ E + +E+++E
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Query: 226 EV 227
E+
Sbjct: 293 EL 294
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
K K+ E EE EEE E E E ++E+E + EE+E+
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKED 273
Score = 36.1 bits (84), Expect = 0.014
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
E E EE EE + + E + K+E++ +E+ EE+E+ K + ++ E +
Sbjct: 228 ETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILK 287
Query: 241 EVLIK 245
E +
Sbjct: 288 EKKDE 292
Score = 34.2 bits (79), Expect = 0.056
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 194 KKNKE----EEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
KK KE EE EEE E + + +G +E+E EE+E+ + L++
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 250 EEN 252
E
Sbjct: 284 EIL 286
Score = 31.1 bits (71), Expect = 0.66
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 189 EEVKQKKNKEEEEEEE-EKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE---EVLI 244
+E + + +EEE + E E E + K+E E EE+ + ++K + ++ E+ ++
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 245 KLEEEEE 251
K +++EE
Sbjct: 287 KEKKDEE 293
Score = 29.6 bits (67), Expect = 1.9
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE 202
+I + + N ++++ + + EE+ ++EE K++KNK EE+E
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEE--KKEKNKREEKE 678
Score = 29.2 bits (66), Expect = 2.8
Identities = 8/49 (16%), Positives = 26/49 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ + + E+E + EE+ + KE+ ++ E+ + + +++++ E
Sbjct: 245 TTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 27.7 bits (62), Expect = 7.5
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
IE+++ + + ++K K+EE++E+ K+EE E
Sbjct: 647 IEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 27.3 bits (61), Expect = 9.0
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 163 KFWENIAGEEEKKEEDEIEEEE-----NEEEEEVKQKKNKEEEEEEEEKKEE 209
+ + K+E++ EE+ E+E+ K + + E +E+K EE
Sbjct: 242 EIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 40.6 bits (96), Expect = 6e-04
Identities = 18/73 (24%), Positives = 27/73 (36%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
G E K +EEEE +EE ++ + + + E EE E E E + EE
Sbjct: 27 LGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAA 86
Query: 229 KQKKNEEEEEEEE 241
+ E
Sbjct: 87 EAAAAAEAAARPA 99
Score = 28.3 bits (64), Expect = 5.2
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 193 QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ K+ EEEE ++E+ + E E + E EE + + E + E E E
Sbjct: 30 EVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAA 89
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 40.1 bits (94), Expect = 7e-04
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
E E E+EV ++ +EE+EE++E++E+ ++EE + EEE+EE+ K KK +E E E+L
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 244 IK 245
K
Sbjct: 88 NK 89
Score = 37.8 bits (88), Expect = 0.004
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E EK+ DE EEEE EE++E ++K +EEE +EE+++E++ +K + E E E++ +
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89
Query: 231 KK 232
K
Sbjct: 90 TK 91
Score = 32.4 bits (74), Expect = 0.24
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E+E E+E EE+E EKEE + EEE+ + ++ +EEEE+EE K ++ +E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEV--DEEEEKEEKKKKTKKVKET 80
Score = 31.3 bits (71), Expect = 0.55
Identities = 17/58 (29%), Positives = 39/58 (67%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
K+ ++E +EEE++E++E ++EE + ++EEE +++K E++++ ++V E E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 30.1 bits (68), Expect = 1.1
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEE---EEEEEKKEEDEIEKEEGENEEE 222
E EEEK + E E +E EE+EE K+K K +E E E K + + + +E
Sbjct: 45 EEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVTKE 104
Query: 223 EEEEVVKQKKNEEEE 237
E K N+ E+
Sbjct: 105 EYAAFYKSLTNDWED 119
Score = 29.0 bits (65), Expect = 2.7
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
E E++++EE ++EE +EEE K++K K+ ++ +E E + + K
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 38.6 bits (90), Expect = 9e-04
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
+E+E EEE+ +E E + + E +E++K+E + + E+ E + E
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK-EKPKTE 142
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E D+ EEE EE + ++++ E + E ++K++ E+ K + E E+ + E +
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 37.4 bits (87), Expect = 0.002
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
EEEE EEE + ++ E + E K+++ + +E+ + E K K
Sbjct: 97 EEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 36.3 bits (84), Expect = 0.005
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
IF+ + EEE+ EE+ +E E E+ E K + ++++ E + K E E K E
Sbjct: 87 IFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 35.9 bits (83), Expect = 0.006
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+DE EE E E +E +Q+ E + E +EKK+ + + + + + + E + K K
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 35.9 bits (83), Expect = 0.006
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGEN-----EEEEEEEVVKQKKNEEEEEEEEVLIK 245
++ + ++EEEE E++ DE E+E+ +E+++ EV K K +E+ + E K
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 32.8 bits (75), Expect = 0.078
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
E E E+++ E + E E+++ K E+E+ + E K+
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKP 146
Score = 30.5 bits (69), Expect = 0.42
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 206 KKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+DE E+ E E+ +E E+E + K E +E+++ + K + E+E
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 207 KEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+E+E +EE +E E+E+ + +++E+++ E K E+E+
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKP 139
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 39.8 bits (93), Expect = 0.001
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 171 EEEKKEEDEIEEEENE--EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E+ K E +EE N E+ +K+ +++ E E+ +E E K+E E E EE +E
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERE 559
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+ KK E E+E +E L L++E E+
Sbjct: 560 RNKKLELEKEAQEALKALKKEVES 583
Score = 35.6 bits (82), Expect = 0.021
Identities = 17/87 (19%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E++ + +++ +E+ + ++E++Q+ + +E E +K E ++ +E + ++E E ++++
Sbjct: 528 EQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRE 587
Query: 231 KKNEEEEEEE-----EVLIKLEEEEEN 252
K ++ + + E L+KL+E ++
Sbjct: 588 LKEKKIHKAKEIKSIEDLVKLKETKQK 614
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/72 (22%), Positives = 38/72 (52%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EE+++E + + + ++ + E+E+EE++++ E + E + E+ +
Sbjct: 7 TQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66
Query: 226 EVVKQKKNEEEE 237
E+ KQKK E ++
Sbjct: 67 ELKKQKKQEIQK 78
Score = 37.9 bits (88), Expect = 0.004
Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE+ EEE+ EE E V + + +++E ++EDE E+++ E E + E+ K+
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKR 60
Query: 231 KKNEEEEEEEEVLIKLEE 248
+K +E +++ ++++
Sbjct: 61 EKARLKELKKQKKQEIQK 78
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 39.5 bits (93), Expect = 0.001
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE-EKKEEDEIEKEEG----ENEEEE 223
A EE K E+E E E E+++ + + + EE ++K E +KEE E E
Sbjct: 56 AKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSN 115
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEE 248
+E+ + +K+ E EE E +LE
Sbjct: 116 KEKNLDEKEEELEELIAEQREELER 140
Score = 36.1 bits (84), Expect = 0.015
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E K+E+ +E++E E + K KEEE EE ++ +E+E+ G +EE +E ++++
Sbjct: 97 ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEE 156
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
+ EE E LIK EEE
Sbjct: 157 VE-EEARHEAAKLIKEIEEE 175
Score = 33.4 bits (77), Expect = 0.10
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 18/99 (18%)
Query: 171 EEEKKEEDEIEEE-ENEEEEEVKQKKNKEEEEEEEEKKEEDEIE-----KEE-------- 216
EE KKE + +++E E +EEV + + + E E +E + E +E +EE
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMES 98
Query: 217 ----GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EN E++E+E+ ++KN +E+EEE + E+ EE
Sbjct: 99 LDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 31.8 bits (73), Expect = 0.35
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ I EE +E E +K++ E +EE + + E E E +E NE + E + Q
Sbjct: 28 GSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQ 87
Query: 231 K------KNEEEEEEEEVLIKLEEE 249
+ K E +++EE L K E+E
Sbjct: 88 REETLDRKMESLDKKEENLEKKEKE 112
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 39.7 bits (93), Expect = 0.001
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEED---EIEKEEGENEEEEEEEVVKQKKNEE 235
+E EEV++ + + + EE K E E+E+ + EE E + + E+
Sbjct: 75 GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLED 134
Query: 236 EEEEEEVLIKLEEEEEN 252
EE E L L+ +
Sbjct: 135 LLEELEPLAYLDFDLSL 151
Score = 27.3 bits (61), Expect = 9.1
Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKE---EEEEEEEKKEEDEIEKEEGEN 219
E G +E ++ E + + + + + E +E+EK E
Sbjct: 35 DLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKL--EA 92
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + EEV+K + E EE E E
Sbjct: 93 ELKSLEEVIKPAEKFSSEVEELTRKLEERLSE 124
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 39.6 bits (92), Expect = 0.001
Identities = 18/74 (24%), Positives = 39/74 (52%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ E+ EE++ EEE ++ K KK K ++ ++ + + ++ + + E+ +V
Sbjct: 317 DEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLV 376
Query: 229 KQKKNEEEEEEEEV 242
KK +E ++EE V
Sbjct: 377 TAKKQKEPKKEEPV 390
Score = 37.2 bits (86), Expect = 0.007
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 170 GEEEKKEEDEIEEEE--NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
G++E +EED I + + EE + K + E + E +++ED E EE +NEEE
Sbjct: 277 GDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Query: 228 VKQK 231
+K
Sbjct: 337 KGKK 340
Score = 33.8 bits (77), Expect = 0.073
Identities = 20/90 (22%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK-----EEDEIEKEEGENE 220
+ G+E K ++ +EE ++++ K KNK++ +++++ K + DE + ++G++E
Sbjct: 222 DEDDGDESDKGGED-GDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDE 280
Query: 221 EEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
EE+ + + + EE E + E
Sbjct: 281 GREEDYISDSSASGNDPEEREDKLSPEIPA 310
Score = 31.9 bits (72), Expect = 0.30
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE--KEEGENEEEEEEEVV 228
++ + + + ++E EE+ + + EE E K EI E ++E+ EE E
Sbjct: 267 DDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESE-- 324
Query: 229 KQKKNEEEEEEEEVLIKL 246
++KNEEE + KL
Sbjct: 325 -EEKNEEEGGLSKKGKKL 341
Score = 31.5 bits (71), Expect = 0.44
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE-----EEKKEEDEIEKEEGENEE 221
+ +++ K + + +E + + +E EE D E+E+ + E
Sbjct: 254 KLDDDKKGKRGGDDDADEYDSD------DGDDEGREEDYISDSSASGNDPEEREDKLSPE 307
Query: 222 EEEEEVVKQKKNEEEEEEEE 241
+ ++Q ++ EE EEE+
Sbjct: 308 IPAKPEIEQDEDSEESEEEK 327
Score = 28.4 bits (63), Expect = 4.8
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE-KEEGENEEEEEEEVVKQKKN 233
K +E+EE E K + ++ + ++ + +DE + E + E+ +EE K+KK
Sbjct: 187 KNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKK 246
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 39.6 bits (92), Expect = 0.001
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK---KEEDEIEKEEG--ENEEEE 223
A +E K+E D ++E ++E+ +++ +E+ ++++ E+DE E+G EN +E
Sbjct: 4015 AADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQEN 4074
Query: 224 EEEVVKQKKNEEEEEEEEV 242
EE K++EE E+ EV
Sbjct: 4075 EESTEDGVKSDEELEQGEV 4093
Score = 39.2 bits (91), Expect = 0.002
Identities = 19/99 (19%), Positives = 51/99 (51%)
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
S P E E++ +E++ + + + E+ + E + K + + E++E ++ED +
Sbjct: 3978 SQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPL 4037
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+ +E+ ++++ +++E+ E+ ++E EE
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEE 4076
Score = 38.4 bits (89), Expect = 0.003
Identities = 17/67 (25%), Positives = 30/67 (44%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
++A ++EK ED EE E EE + +EE E+ E E+ I+ + +
Sbjct: 4054 DLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFAS 4113
Query: 227 VVKQKKN 233
++N
Sbjct: 4114 AEADEEN 4120
Score = 37.7 bits (87), Expect = 0.006
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E ++ED +EE +E+ Q+ + + E++EK ED E+ ENEE E+ V
Sbjct: 4028 DEPMQDEDPLEENNTLDEDI--QQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSD 4085
Query: 231 KKNEEEEEEEEVLIKLEEE 249
++ E+ E E+ I +
Sbjct: 4086 EELEQGEVPEDQAIDNHPK 4104
Score = 36.9 bits (85), Expect = 0.010
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEE---EEEEKKEE--DEIEKEEGENEEEEEEEVVKQKK 232
DE +EE + E++E Q ++ EE +E+ ++++ D E +E NE+ EE V
Sbjct: 4017 DENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENV----- 4071
Query: 233 NEEEEEEEEVLIKLEEEEE 251
+E EE E +K +EE E
Sbjct: 4072 -QENEESTEDGVKSDEELE 4089
Score = 36.1 bits (83), Expect = 0.018
Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE----EDEIEKEEGENEE----E 222
E+ +E + E++ + + K+++E+E+EEE + +DEI+ + EN E
Sbjct: 3924 NEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPE 3983
Query: 223 EEEEVVKQKKNEEEEEEE 240
E+ + + +E+E +
Sbjct: 3984 NEDLDLPEDLKLDEKEGD 4001
Score = 36.1 bits (83), Expect = 0.019
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEE-------------EEVKQKKNKEEEEEEEEKKEEDEI 212
++ E + + E E ++ +EE E++ + N+E+ E E+K E
Sbjct: 3869 KDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSA 3928
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E + +E++ + K+ +E+E+EE
Sbjct: 3929 ANNESDLVSKEDDNKALEDKDRQEKEDEE 3957
Score = 35.4 bits (81), Expect = 0.035
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG----ENEE 221
+ EE + E+ + ++ ++ + K E+ EE +E+E E+G E E
Sbjct: 4033 DEDPLEENNTLD---EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELE 4089
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E + N + + + E +EEN
Sbjct: 4090 QGEVPEDQAIDNHPKMDAKSTFASAEADEEN 4120
Score = 32.7 bits (74), Expect = 0.21
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+++ +E NEE+ ++K+ E+ E D + KE+ E+++ Q+K +EE
Sbjct: 3904 NEKLWDEPNEEDLLETEQKSNEQSAANN---ESDLVSKEDDNKALEDKDR---QEKEDEE 3957
Query: 237 EEEEEVLIKLE---EEEEN 252
E ++V I E + +EN
Sbjct: 3958 EMSDDVGIDDEIQPDIQEN 3976
Score = 32.3 bits (73), Expect = 0.33
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVK-------QKKNKEEEEEEEEKKEEDEIEKEE 216
F EN+ EE E+ +EE E+ E + K + + E EE+ +
Sbjct: 4067 FEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIV 4126
Query: 217 GENEEEEEEEVVK---QKKNEEEEEEEEVLIKLEEEEE 251
GENEE EE+ V+ E E+ +E+ E E
Sbjct: 4127 GENEELGEEDGVRGNGTADGEFEQVQEDTSTPKEAMSE 4164
Score = 31.9 bits (72), Expect = 0.41
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G + + + E+++ EE EE+ + +E E + E + ++ VV
Sbjct: 3821 GVGAEDITNTLNEDDDLEELA------NEEDTANQSDLDESEARELESDMNGVTKDSVVS 3874
Query: 230 QKKNEEEEEEEEVL 243
+ +N + EEE + L
Sbjct: 3875 ENENSDSEEENQDL 3888
Score = 31.1 bits (70), Expect = 0.70
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---EGENEEEEEEEVVKQKKNEEEEEEEEV 242
E++++++ N+E+ + + E + E E G ++ E EE ++ +E
Sbjct: 3832 NEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Query: 243 LIKLEEEEEN 252
+ + E+ N
Sbjct: 3892 VNDIPEDLSN 3901
Score = 30.7 bits (69), Expect = 0.84
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 37/124 (29%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEE----------VKQKKNKEEEEEEE----------- 204
E +A EE+ + +++E E E E V + +N + EEE +
Sbjct: 3838 EELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPE 3897
Query: 205 ------------EKKEEDEIEKEEGENEE----EEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E EED +E E+ NE+ E + V K+ N+ E+++ + EE
Sbjct: 3898 DLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEE 3957
Query: 249 EEEN 252
E +
Sbjct: 3958 EMSD 3961
Score = 30.4 bits (68), Expect = 1.1
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+N A E++ ++E E EEE +++ + + +E + E ++++ E +E+E
Sbjct: 3941 DNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEG 4000
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+V K ++ E+ + E + +EE +
Sbjct: 4001 DV--SKDSDLEDMDMEAADENKEEADA 4025
Score = 30.0 bits (67), Expect = 1.6
Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 185 NEEEEEVKQKKNKEEEEEE--EEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
+E+E +V + + E+ + E +E KEE + EK+E +E+ EE +E+ ++++
Sbjct: 3996 DEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEE--NNTLDEDIQQDDFS 4053
Query: 243 LIKLEEEEEN 252
+ ++E+ N
Sbjct: 4054 DLAEDDEKMN 4063
Score = 29.6 bits (66), Expect = 2.4
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 16/120 (13%)
Query: 149 CILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEE-------- 200
C H + F+ + E EEE+E+++E +++ ++
Sbjct: 2897 CKQHGRDTELAGAFEDGTGMKYGTGNINVSEQIEEEDEKDDEYGEQEKVSDKNDYLKDFI 2956
Query: 201 --EEEEEKKEEDEIEKEEGENE------EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+++ E E E+E+ E E + EEE +KNE+E E E+ L E+E+
Sbjct: 2957 DYDDDGSISTESEPEEEKRECESGFDGWNDYEEEEDDDEKNEKECELEQNAEILIEDEKI 3016
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 39.2 bits (91), Expect = 0.001
Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEEEENEE--EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ +KKEE EE + ++ E+E ++ KE + +E++K+ +E EK+ ++++EE+
Sbjct: 80 QRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQAR 139
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
K ++++ E E +
Sbjct: 140 KAAAEQKKKAEAAKAKAAAEAAK 162
Score = 37.6 bits (87), Expect = 0.004
Identities = 21/81 (25%), Positives = 46/81 (56%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
KK E + +++E + EE+K K+ E+E ++ +KE + ++++ + EE E++ ++Q
Sbjct: 72 SSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQ 131
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K+ EE+ + K + E
Sbjct: 132 KQQEEQARKAAAEQKKKAEAA 152
Score = 36.9 bits (85), Expect = 0.008
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
+ A E+E+ ++ +E+E + +E+ KQ + E++ + E+K++E++ K E
Sbjct: 87 QVAEELKPKQAAEQERLKQ--LEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAE 144
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+++ E K + + K EE
Sbjct: 145 QKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEA 176
Score = 33.4 bits (76), Expect = 0.085
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE-----EEEKKEEDEIEKEEGENEEEEEE 225
E+E+ + E +++ E E++ + ++ ++EE+ E++KK E K E + +
Sbjct: 107 EKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAA 166
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
K+K E + EE K E
Sbjct: 167 AEAKKKAEEAAKAAEEAKAKAEAAAA 192
Score = 33.4 bits (76), Expect = 0.092
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEE-----EEEEKKEEDEIEKEEGENEEEE 223
A E EK+ + E +++E + + ++K K E E K + K++ E +
Sbjct: 120 AEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKA 179
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEE 250
EE + + +++ E K E+
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Score = 31.8 bits (72), Expect = 0.32
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 166 ENIAGEEEKKEEDEIE-----EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
E + +E++K+ +E E E++ +EE+ K ++++ E + K E K + E
Sbjct: 109 ERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Query: 221 EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+++ E + E + + E K + E E
Sbjct: 169 AKKKAEEAAKAAEEAKAKAEAAAAKKKAEAE 199
Score = 31.1 bits (70), Expect = 0.59
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E K + +++ EE + ++ + E +KK E E + + + E E +
Sbjct: 157 AAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAK 216
Query: 229 KQKKNEEEEEEE 240
+KK E EE+
Sbjct: 217 AEKKAEAAAEEK 228
Score = 30.7 bits (69), Expect = 0.64
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
++ + + E++ K+K+ + EE + ++ E E K+ E+E + +QK
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQL---EKERLKAQEQQK 118
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+ EE E++ ++ K +EE+
Sbjct: 119 QAEEAEKQAQLEQKQQEEQA 138
Score = 30.7 bits (69), Expect = 0.70
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEE--EEEEEEKKEEDEIEKEEGENEEEEEEE 226
A E++KK E + + E + K E ++ EE K +E + + +++ E
Sbjct: 142 AAEQKKKAE----AAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAE 197
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+ E+ + E E K E++ E
Sbjct: 198 AEAKAAAEKAKAEAEAKAKAEKKAE 222
Score = 29.5 bits (66), Expect = 1.9
Identities = 15/78 (19%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE----EEEKKEEDEIEKEEGENEEEE 223
+ + + + + ++ E++ + K+++ EE + E+E+ ++ E E+ + + ++++
Sbjct: 60 VVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQ 119
Query: 224 EEEVVKQKKNEEEEEEEE 241
EE KQ + E++++EE+
Sbjct: 120 AEEAEKQAQLEQKQQEEQ 137
Score = 28.4 bits (63), Expect = 3.9
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 169 AGEEEKKEEDEI---EEEENEEEEEVKQKKNKEEE---EEEEEKKEEDEIEKEEGENEEE 222
A E KK+ +E EE + E KK E E E+ K E + K E + E
Sbjct: 165 AAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAA 224
Query: 223 EEEEVVKQKKNEEEEEEEE 241
EE+ +KK + + +
Sbjct: 225 AEEKAAAEKKKAAAKAKAD 243
Score = 27.6 bits (61), Expect = 6.2
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE--EKKEEDEIEKEEGENEEEEEEE 226
A E + K E +++ E E + +K K E E + EKK E E++ +++ +
Sbjct: 180 AEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAK 239
Query: 227 VVKQKKNEEEEEEEE 241
K + E
Sbjct: 240 AKADKAAAAAKAAER 254
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 39.4 bits (92), Expect = 0.001
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKE------EEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E+ +D IEE+ +EE+ + Q N E EE E ++ EEDE E +GE EE E +
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279
Query: 227 VVKQKKNEEEEEEE 240
+ +E +E +E
Sbjct: 280 AEASEDSESDESDE 293
Score = 31.7 bits (72), Expect = 0.40
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E +EE E +E E+E E + +E E + E E+ E ++ + + E E
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 28.7 bits (64), Expect = 4.0
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 189 EEVKQKKNKEEEEEEE-EKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE +E+ +EE+ + + D E E EE E + ++ + E + E E
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 39.0 bits (91), Expect = 0.002
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+E K E + E E EE+ K+K+ + ++ E+E ++E+ E EEEE EE
Sbjct: 271 EDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPP 330
Query: 231 KKNEEEEEEEEV 242
++EEE+EEV
Sbjct: 331 PLPKKEEEKEEV 342
Score = 38.7 bits (90), Expect = 0.002
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKK--NKEEEEEEEEKKEEDEIEK-EEGENEEEEEEEV 227
E++ E +E+ +E+E + + EEE EE+EK++ ++K E E+E+EE E V
Sbjct: 255 LEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIV 314
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
+ EEE EE E ++EEE
Sbjct: 315 PESPVEEEESEEPEPPPLPKKEEE 338
Score = 37.9 bits (88), Expect = 0.003
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKK-------------NKEEEEEEEEKKEEDEIEKEEG 217
+EKKE+ E E +EE E + K +E+E+E+E K E E
Sbjct: 226 TKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEE 285
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E EE+E+E+ + KK E+E+E+E + + E
Sbjct: 286 ETEEKEKEKRKRLKKMMEDEDEDEEMEIVPE 316
Score = 31.0 bits (70), Expect = 0.67
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E+EK++ +++ +E+E+ + + E EEEE +E E +EEE+E
Sbjct: 284 EEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEP---EPPPLPKKEEEKE 340
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
EV V+ K ++E
Sbjct: 341 EVTVSPDGGRRRGRRRVMKKKTFKDE 366
Score = 27.1 bits (60), Expect = 8.9
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
K+ K K+E++E E ++E E+E G+ + E+E + +E+E+E+E
Sbjct: 224 KKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPK 275
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/86 (18%), Positives = 31/86 (36%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+I +F + + E+ K + +E +K +K E +E+ ++ E+
Sbjct: 33 DILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAES 92
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIK 245
+ EEEEE E
Sbjct: 93 TRSSHPKSKAPSTESEEEEEPEETPD 118
Score = 29.4 bits (66), Expect = 1.8
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 15/88 (17%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE---------------EEEKKEEDEIE 213
+ + + +ED +E + E+ E + K +E E +E
Sbjct: 24 SKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKP 83
Query: 214 KEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ ++ E K K E EEEE
Sbjct: 84 AKPRKSAESTRSSHPKSKAPSTESEEEE 111
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 38.8 bits (91), Expect = 0.002
Identities = 10/69 (14%), Positives = 42/69 (60%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ + D+ ++++++++ + + +++E+++E ++D+++ E+ E +E +E E +
Sbjct: 125 DVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Query: 232 KNEEEEEEE 240
+ +E++
Sbjct: 185 DDFVWDEDD 193
Score = 37.7 bits (88), Expect = 0.005
Identities = 13/56 (23%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+++ ++D+I++++++E+++ + + ++E+EEKKE E+EK +++ +E+
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDD-DVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 37.7 bits (88), Expect = 0.005
Identities = 13/81 (16%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ KK E + +++++ VK + +++++ ++D+++ ++ ++++++E++
Sbjct: 101 DSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDD 160
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ ++E+EE K E +E
Sbjct: 161 DDDDVDDEDEE---KKEAKEL 178
Score = 35.7 bits (83), Expect = 0.018
Identities = 8/70 (11%), Positives = 46/70 (65%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
++ ++ ++++++++++ + ++++++E+ E+D+ + + E+EE++E + +++
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Query: 232 KNEEEEEEEE 241
++++ +E
Sbjct: 182 SDDDDFVWDE 191
Score = 35.7 bits (83), Expect = 0.021
Identities = 12/84 (14%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ + ++I + ++D+ +++++ +++++ + ++E+++E+ ++D +++E +
Sbjct: 116 DDLNYVKDIDVLNQADDDDDDDDDDDLDDDDID--DDDDDEDDDEDDDDDDVDDEDEEKK 173
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVL 243
E +E E++ +E++ E L
Sbjct: 174 EAKELEKLSDDDDFVWDEDDSEAL 197
Score = 35.4 bits (82), Expect = 0.023
Identities = 13/81 (16%), Positives = 51/81 (62%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+K D+ ++ ++ +V + + ++++++++ ++D+I+ ++ + +++E+++
Sbjct: 106 AEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDV 165
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+EE++E + L KL ++++
Sbjct: 166 DDEDEEKKEAKELEKLSDDDD 186
Score = 34.6 bits (80), Expect = 0.044
Identities = 10/85 (11%), Positives = 46/85 (54%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+N +++ + + N+ +++ + + ++++ + ++DE + E+ ++++ ++E
Sbjct: 109 KNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDE 168
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
+ K++ E E+ ++ +E++
Sbjct: 169 DEEKKEAKELEKLSDDDDFVWDEDD 193
Score = 33.4 bits (77), Expect = 0.091
Identities = 12/62 (19%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + D+ +++E+++E++ + E+EE++E KE +++ ++ +E++ E ++Q
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEA-KELEKLSDDDDFVWDEDDSEALRQ 199
Query: 231 KK 232
+
Sbjct: 200 AR 201
Score = 30.7 bits (70), Expect = 0.65
Identities = 8/59 (13%), Positives = 34/59 (57%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
++E ++D++++E+ E++E + +K ++++ ++ + + + + + + + VK
Sbjct: 156 DDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLTATADPVK 214
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/79 (10%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
++ ++ + ++++++ +++ ++++ E+D+ + ++ + ++E+EE+
Sbjct: 119 NYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEK------ 172
Query: 233 NEEEEEEEEVLIKLEEEEE 251
+E +E E++ + +
Sbjct: 173 -KEAKELEKLSDDDDFVWD 190
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 38.0 bits (89), Expect = 0.002
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
K + EEEE E + +N EKK DE+++E E E++ E ++K+
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHEN------ALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
Query: 233 NEEEEEEEE 241
E + E
Sbjct: 69 LAEMKALAE 77
Score = 31.9 bits (73), Expect = 0.18
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 152 HSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEE-----EEVKQKKNKEEEEEEEEK 206
E EKK DE++EE +EEE EE ++K+ E + E+
Sbjct: 20 PKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEKS 79
Query: 207 K--EEDEIEKEEGENE 220
K E EI K + E
Sbjct: 80 KFGEVYEISKPDYVRE 95
Score = 28.4 bits (64), Expect = 2.9
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E ++ +KK + K+EE+E + + E E + +EE +EEE
Sbjct: 2 EWNDILRKKGILPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEE 56
Score = 26.8 bits (60), Expect = 9.0
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLI 244
K +EEE EE + +E E++++ + E +EEE++ +
Sbjct: 16 KPPSPKEEE--EEALELAIQEAHENALEKKLLDELDEELDEEEDDRFL 61
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 39.0 bits (91), Expect = 0.002
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E+ K E + EE E + +++ + E+ E E+ E+E E+E+E+
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Query: 229 KQKKNEEEEEE 239
+ + EEEE
Sbjct: 439 EAQPEEEEEAR 449
Score = 38.6 bits (90), Expect = 0.002
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E + E+ + EEE ++ + + E E+ E +E+ + + E+E E+E +
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Query: 231 KKNEEEEEEEE 241
+ EEEEE
Sbjct: 439 EAQPEEEEEAR 449
Score = 38.6 bits (90), Expect = 0.002
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 169 AGEEEKKEEDEIEEEENEE--EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E+ K + I + E EE + E +++ E+ E EE E+ + E+E+E
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Query: 227 VVKQKKNEEEEE 238
Q + EEE
Sbjct: 438 EEAQPEEEEEAR 449
Score = 38.2 bits (89), Expect = 0.003
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+E E+ + E+ ++ +EE + E ++ + + E E + E + E+E+E
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Query: 241 EVLIKLEEEEE 251
E EEEE
Sbjct: 438 EEAQPEEEEEA 448
Score = 37.1 bits (86), Expect = 0.006
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
D E ++ E+ +V + ++ EEEE +++ E+ +E E+ E EE+ E+E
Sbjct: 372 DSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEF 431
Query: 238 EEEEVLIKLEEEEE 251
E+E+ L + + EEE
Sbjct: 432 EDEDELEEAQPEEE 445
Score = 36.3 bits (84), Expect = 0.010
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
E + E E+ + E + Q++ +E + E E++ E E + E+ E + + + E
Sbjct: 373 SAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFE 432
Query: 235 EEEEEEEVLIKLEEEEE 251
+E+E EE + EEE
Sbjct: 433 DEDELEEAQPEEEEEAR 449
Score = 33.6 bits (77), Expect = 0.080
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E K E I+ EE++ EE E E+ + +++ E ++E E E E
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Query: 217 GENEEEEEEE 226
E + EEEEE
Sbjct: 438 EEAQPEEEEE 447
Score = 33.6 bits (77), Expect = 0.093
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
I + E A + E +E E E+ E EE+ + +E E++ E+++ +E E
Sbjct: 389 ISQREEEEALQREAEERLEAEQAERAEEDA----RLRELYPLPEDEFEDEDELEEAQPEE 444
Query: 221 EEEEE 225
EEE
Sbjct: 445 EEEAR 449
Score = 30.9 bits (70), Expect = 0.56
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 195 KNKEEEEEEEEKKEEDEI----EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
K+ E ++E E + E+ E+EE E EE +Q + EE+ L L E+E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Query: 251 EN 252
Sbjct: 431 FE 432
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 39.2 bits (91), Expect = 0.002
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEEK + EEEE + E +K+K+ EEEE+ E+ K E+E E++ EEE +
Sbjct: 752 EEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEEL 811
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K+ E EEE++LI+ EE+ +
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKE 833
Score = 36.9 bits (85), Expect = 0.009
Identities = 25/81 (30%), Positives = 39/81 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++E E E EE+ ++Q++ +EEE EE E E +K E EEE E +
Sbjct: 805 RALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEI 864
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K E +E +LEE++
Sbjct: 865 TKEELLQELLLKEEELEEQKL 885
Score = 33.8 bits (77), Expect = 0.079
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ KE E E+E+ +EEE+K +EEE + E K E +E + +E E+E +
Sbjct: 269 AQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLE 328
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K+ ++E+EE E L K +E E
Sbjct: 329 KELKKEKEEIEELEKELKELE 349
Score = 33.8 bits (77), Expect = 0.091
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+KEE +EE E + K+ E EEE+ E++E KEE E E + ++
Sbjct: 789 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 848
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ EEE E + ++ +EE
Sbjct: 849 LEKLAEEELERLEEEITKEELL 870
Score = 33.4 bits (76), Expect = 0.11
Identities = 24/92 (26%), Positives = 52/92 (56%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E + + +E+++ E +E E EEE + K +EEE+E++ +EE+ + E
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + E ++++K ++EE+ +E +L++ E+
Sbjct: 298 ELKSELLKLERRKVDDEEKLKESEKELKKLEK 329
Score = 33.4 bits (76), Expect = 0.13
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+ K E+E EE+ +EEE++ + + +EE E ++E+ IE+EE EEE EE ++
Sbjct: 784 TEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 843
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K+ ++ E+ E ++ EEE
Sbjct: 844 KEEQKLEKLAEEELERLEEEIT 865
Score = 33.4 bits (76), Expect = 0.14
Identities = 27/87 (31%), Positives = 50/87 (57%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + K++E EEE+ E+ + ++K+ K + +EEE + E+E+++E EEE+
Sbjct: 765 EEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 824
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++K EEE EE + +K E++ E
Sbjct: 825 IEQEEKIKEEELEELALELKEEQKLEK 851
Score = 33.0 bits (75), Expect = 0.15
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ K E K+EE+ E E +V ++ +E E+E +K E++ +++E
Sbjct: 280 KEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIE 339
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E+E + ++ K+ EEEEEE++ E+ E+
Sbjct: 340 ELEKELKELEIKREAEEEEEEQLEKLQEKLEQL 372
Score = 33.0 bits (75), Expect = 0.15
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +K E +E E EE + + E E EE E+ EKE+ E+ +EEEEE K+
Sbjct: 906 ESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKR 965
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+EE L+ + E EE
Sbjct: 966 LLLAKEELGNVNLMAIAEFEEK 987
Score = 32.6 bits (74), Expect = 0.21
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E K E + E +EEE E++ + ++ K +EEEE + + ++ +
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDE 314
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E+ +E E +K +E ++E+E + +LE+E +
Sbjct: 315 EKLKESEKELKKLEKELKKEKEEIEELEKELKE 347
Score = 32.6 bits (74), Expect = 0.22
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E KK E E+++E+ E EE K+ K E + E EE++EE + +E + EEE K+
Sbjct: 322 KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKK 381
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++E ++ + E +
Sbjct: 382 LESERLSSAAKLKEEELELKNE 403
Score = 32.2 bits (73), Expect = 0.25
Identities = 28/92 (30%), Positives = 55/92 (59%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ + ++ + E+++ D+ E+ + E+E K +K ++E+EE E+ E++ E E
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EEEEEE +++ + + E+ EEE+L K + E E
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESE 385
Score = 32.2 bits (73), Expect = 0.29
Identities = 31/86 (36%), Positives = 51/86 (59%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + EE++KEE + EEE++++ +++K+N+ EE EE + E E E EE +
Sbjct: 888 ELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEAD 947
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E K++ N+EEEEE + L +EE
Sbjct: 948 EKEKEEDNKEEEEERNKRLLLAKEEL 973
Score = 32.2 bits (73), Expect = 0.29
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
++ D ++E +E+EE++ K + E+EEE + E ++EE E + +EEE + K
Sbjct: 235 LNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAK 294
Query: 232 KNEEEEEEEEVLIKLEEEEEN 252
+ EE + E L + + ++E
Sbjct: 295 EEEELKSELLKLERRKVDDEE 315
Score = 31.9 bits (72), Expect = 0.36
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
++EE EEE E E+K+++ E+ EEE ++ E+EI KEE E +EE
Sbjct: 819 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEE 878
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
++++K ++E E +E K E++E
Sbjct: 879 ELEEQKLKDELESKEEKEKEEKKEL 903
Score = 31.5 bits (71), Expect = 0.46
Identities = 20/87 (22%), Positives = 43/87 (49%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + E +EE+ + + + EE + +E+EE + + ++E E + +
Sbjct: 214 YQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLK 273
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E +++K ++ +EEE L+ EEEE
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKEEEELK 300
Score = 31.5 bits (71), Expect = 0.47
Identities = 23/82 (28%), Positives = 48/82 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+EE+KE+ EEE +E ++ K++ + E + +E+++++ E E ++ E+E ++
Sbjct: 276 KEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEK 335
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++ EE E+E + L E EE
Sbjct: 336 EEIEELEKELKELEIKREAEEE 357
Score = 31.5 bits (71), Expect = 0.51
Identities = 26/82 (31%), Positives = 48/82 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +KKE+ EE + + E+ + +K +E +++ +E +E++ E EEEEE+ +K+
Sbjct: 701 EIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKK 760
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++ EEE+ E + K EEE
Sbjct: 761 EEEEEEKSELSLKEKELAEEEE 782
Score = 31.1 bits (70), Expect = 0.58
Identities = 25/93 (26%), Positives = 56/93 (60%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
++ + + +EE++ + E+ + E + ++ ++ K E+E ++ EK+ + E E+ E
Sbjct: 283 KLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELE 342
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+E +E E+ ++ + EEEE+ E++ KLE+ EE
Sbjct: 343 KELKELEIKREAEEEEEEQLEKLQEKLEQLEEE 375
Score = 31.1 bits (70), Expect = 0.65
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE+ E+ + + E+ EEE K+K E + KEE+ K E E E + E+ +Q
Sbjct: 358 EEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQ 417
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+++ +EE++E L +EE EE
Sbjct: 418 EEDLLKEEKKEELKIVEELEE 438
Score = 31.1 bits (70), Expect = 0.66
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEV-----KQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
E E KE++ EEEE E+ +V ++ K +EEE E++ ++E E E E
Sbjct: 764 EEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQL 823
Query: 221 EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+EE +K+++ EE E + KLE+ E
Sbjct: 824 LIEQEEKIKEEELEELALELKEEQKLEKLAE 854
Score = 31.1 bits (70), Expect = 0.69
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ EE EE I + E EE+ ++ E+E+EE+ K+EE+E K +EE
Sbjct: 916 KENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGN 975
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
+ EE+EE +L++E
Sbjct: 976 VNLMAIAEFEEKEERYNKDELKKER 1000
Score = 30.7 bits (69), Expect = 0.79
Identities = 29/86 (33%), Positives = 45/86 (52%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E++++ E E EE E + +QK K EEE E +EE E+ E +EEE
Sbjct: 820 EEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEE 879
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
++ K+E E +EE+ + +E EE
Sbjct: 880 LEEQKLKDELESKEEKEKEEKKELEE 905
Score = 30.7 bits (69), Expect = 0.82
Identities = 17/82 (20%), Positives = 37/82 (45%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+ KK + + +E E EE + EE E+ ++E E E ++E+ K+
Sbjct: 205 EQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKE 264
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++ + +E + E++ +
Sbjct: 265 EEILAQVLKENKEEEKEKKLQE 286
Score = 30.7 bits (69), Expect = 0.89
Identities = 27/87 (31%), Positives = 51/87 (58%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E I + K+ ++E +E++ +EEE K +EE + E K E +++ EE E E+E
Sbjct: 265 EEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEL 324
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ ++++ +E+EE EE+ +L+E E
Sbjct: 325 KKLEKELKKEKEEIEELEKELKELEIK 351
Score = 30.7 bits (69), Expect = 0.92
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E ++E ++ E + + + EE K +E +++++ ++ E ++K E
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQ----AKKALEYYQLKEKLEL 222
Query: 236 EEEEEEVLIKLEEEEEN 252
EEE L L+ EE
Sbjct: 223 EEENLLYLDYLKLNEER 239
Score = 30.3 bits (68), Expect = 0.99
Identities = 26/88 (29%), Positives = 40/88 (45%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
EE E+ +E EE E KQ+ KEEE + KE E EKE+ EEE +
Sbjct: 231 DYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELK 290
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++++ + E + E +EE+
Sbjct: 291 LLAKEEEELKSELLKLERRKVDDEEKLK 318
Score = 30.3 bits (68), Expect = 1.1
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+D+I EE E+++K+K+ +EE+ ++++EE+E + + +E EEE +K E
Sbjct: 731 AQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVE 790
Query: 236 EEEEEEVLIKLEEEEEN 252
EE+EE++ + EE
Sbjct: 791 EEKEEKLKAQEEELRAL 807
Score = 30.3 bits (68), Expect = 1.1
Identities = 16/85 (18%), Positives = 35/85 (41%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + +E E+ + E ++K + EEE E+ +E +
Sbjct: 190 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRD 249
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
E + + +++E E+EE ++ +E
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKE 274
Score = 29.9 bits (67), Expect = 1.3
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+ K E E EE EE +E +++++ +EEEEE K+ E+ N
Sbjct: 921 EERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMA 980
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +K E ++E +LEEE++
Sbjct: 981 IAEFE---EKEERYNKDELKKERLEEEKK 1006
Score = 29.9 bits (67), Expect = 1.3
Identities = 19/84 (22%), Positives = 46/84 (54%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+ + K E+ I+ + +E ++ ++ ++E E+EE+ +++ + E +E++ +E
Sbjct: 228 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEE 287
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
+ +EEEE + L+KLE +
Sbjct: 288 ELKLLAKEEEELKSELLKLERRKV 311
Score = 29.9 bits (67), Expect = 1.4
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ EEEK+ + +E E EE+ ++KK + + EE E+ E + K E EE E++
Sbjct: 398 LELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQ 457
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ K E ++ E++L + + +
Sbjct: 458 ALKLLKDKLELKKSEDLLKETKLVKLL 484
Score = 29.9 bits (67), Expect = 1.4
Identities = 24/81 (29%), Positives = 39/81 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E + EE +EE + +E+EE +++ +E + KEE E EE+EE +
Sbjct: 934 YESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNK 993
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ ++E EEE L E E
Sbjct: 994 DELKKERLEEEKKELLREIIE 1014
Score = 29.9 bits (67), Expect = 1.5
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKK---NKEEEEEEEEKKEEDEIEKEEGENEEE 222
E EEE ++++ +EE+ENE EE + ++ K E E EE EE + +++E +N+EE
Sbjct: 899 EKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEE 958
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EEE + +EE ++ E EE+
Sbjct: 959 EEERNKRLLLAKEELGNVNLMAIAEFEEKE 988
Score = 29.6 bits (66), Expect = 2.0
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ +++ +EE+N+EEEE + K+ +EE E EE E ++E ++
Sbjct: 941 LLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKER 1000
Query: 231 KKNEEEEEEEEVLIKLEEE 249
+ E++E E++ + +
Sbjct: 1001 LEEEKKELLREIIEETCQR 1019
Score = 28.0 bits (62), Expect = 6.1
Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK------EEGENEEEEE 224
E+E +E+ E E +NE ++ K KE+ +EE KK + E E+ +E +++ EE
Sbjct: 679 EQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEE 738
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
++++QK E+EEEEE+ +K EEEEE
Sbjct: 739 LKLLEQKIKEKEEEEEKSRLKKEEEEE 765
Score = 28.0 bits (62), Expect = 6.1
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E KKE++EIEE E E +E +++ +EEEEE+ EK +E + EE +++ E
Sbjct: 329 KELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLS 388
Query: 231 KKNEEEEEEEEVLIKLEEE 249
+ +EEE E+ + E+E
Sbjct: 389 SAAKLKEEELELKNEEEKE 407
Score = 28.0 bits (62), Expect = 6.4
Identities = 20/87 (22%), Positives = 48/87 (55%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E + + E+++E ++ E +E+EE++ +++ KEE + EE +E E ++ + E+EE
Sbjct: 395 EEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEEL 454
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+ + ++ E ++ + E +
Sbjct: 455 EKQALKLLKDKLELKKSEDLLKETKLV 481
Score = 27.2 bits (60), Expect = 9.2
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 171 EEEKKEEDEIEEEE---NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
E+EK+E+ E+EEE N EE+ + + + EE K E E E+ E +E+E+E
Sbjct: 894 EKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEE 953
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEEN 252
+++ EE + + +
Sbjct: 954 DNKEEEEERNKRLLLAKEELGNVNL 978
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 38.2 bits (89), Expect = 0.002
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG-ENEEEEEEEVVK 229
++ K E+ E+ E E + + K +E+ E EE +KEE + EE E + EE ++
Sbjct: 5 CKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENN 64
Query: 230 QKKNEEEEEEEEV 242
+ K E ++ E E+
Sbjct: 65 KLKEENKKLENEL 77
Score = 34.3 bits (79), Expect = 0.031
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
++E + + EN EE+ K+ +NKEE++ +EE E +EIEKEE + EE EV
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEV------- 54
Query: 235 EEEEEEEVLIKLEEEEE 251
+ EE ++ KL+EE +
Sbjct: 55 KIEELKDENNKLKEENK 71
Score = 33.2 bits (76), Expect = 0.077
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E + K K E EE+ KE + E+++G+ E+ E EE+ K++ E+ EE EV I+ +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 249 EEEN 252
+E N
Sbjct: 61 DENN 64
Score = 31.3 bits (71), Expect = 0.34
Identities = 17/73 (23%), Positives = 38/73 (52%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E++ ++ + E E + +E + K+ + +EE+ E +E ++ E E E E + +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 231 KKNEEEEEEEEVL 243
+N + +EE + L
Sbjct: 61 DENNKLKEENKKL 73
Score = 27.4 bits (61), Expect = 6.2
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E+ EE+ + E+ +EE E+ EE + K EE ++E K ++E +K E E E
Sbjct: 26 EDKGKEEDLEFEEIEKEEIIEDSEE--SNEVKIEELKDENNKLKEENKKLENELEA 79
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.9 bits (91), Expect = 0.002
Identities = 31/82 (37%), Positives = 43/82 (52%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE K E +E+ EE E +EE+ + K + EE E E + +E+ E E EE EE +
Sbjct: 270 EELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELK 329
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+K E +EE E L EE E
Sbjct: 330 EKIEALKEELEERETLLEELEQ 351
Score = 38.5 bits (90), Expect = 0.003
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + E+ +E +E EE E ++ ++ E EE KEE E + E EE
Sbjct: 319 EELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELF 378
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++++ E E E E+ +LEE +
Sbjct: 379 EALREELAELEAELAEIRNELEELKRE 405
Score = 35.5 bits (82), Expect = 0.023
Identities = 26/87 (29%), Positives = 38/87 (43%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + GE E E E EE E + ++ KE+ E +E+ EE E EE E E E
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++ + + EE+ E E
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREE 384
Score = 35.1 bits (81), Expect = 0.031
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E+E +E E EE E+EE++ + + EEE+EE ++E E+E E E +EE E+ +
Sbjct: 854 LEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRER 913
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++ E + E EV + EEE
Sbjct: 914 LEELEAKLERLEVELPELEEELE 936
Score = 35.1 bits (81), Expect = 0.036
Identities = 28/86 (32%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE- 225
EE +++ +E++ E EEE++Q +++ EE EEE ++ E+E+E+ + EE EEE
Sbjct: 708 RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL 767
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +++ + +EE EE+ K + +E
Sbjct: 768 ESLEEALAKLKEEIEELEEKRQALQE 793
Score = 34.7 bits (80), Expect = 0.041
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE K+E +E+E E+ E E+E+K+ + ++EE EEE ++ E E+ + + E E+ E +
Sbjct: 859 EELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELE 918
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K E E E L + EEE
Sbjct: 919 AKLERLEVELPELEEELEEEY 939
Score = 34.7 bits (80), Expect = 0.042
Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
EE ++ + + EE E E E+ + +N+ EE + E + E+ +E+ E+ +EE + ++
Sbjct: 372 EELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELE 431
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
+ E + E EE+ +LEE EE
Sbjct: 432 AELEELQTELEELNEELEELEEQ 454
Score = 34.7 bits (80), Expect = 0.052
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVK 229
EE + E +E+EE E +E+++ K + EE E ++ E + + E EE EE+ +
Sbjct: 312 EELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALL 371
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++ E E E L +LE E
Sbjct: 372 EELEELFEALREELAELEAELAE 394
Score = 34.3 bits (79), Expect = 0.054
Identities = 32/83 (38%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-EEGENEEEEEEEVVK 229
EE +++ DE+EEE E E+E+++ K + EE E E+++ EDE+++ EE + E EEE ++
Sbjct: 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELE 897
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
+ E +EE E++ +LEE E
Sbjct: 898 SELAELKEEIEKLRERLEELEAK 920
Score = 33.9 bits (78), Expect = 0.089
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
+ ++E +E+EEE E E + + + E E+ ++ E EIE+ E E EE EE+ + ++
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
++ E E+E EE+ +LEE E
Sbjct: 849 EELEELEKELEELKEELEELEA 870
Score = 33.1 bits (76), Expect = 0.15
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+ +E EE + EE+K++ EEE E+ + +E+E+E E EEE EE +
Sbjct: 701 EDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERL 760
Query: 231 KKNEEE-EEEEEVLIKLEEEEEN 252
++ EEE E EE L KL+EE E
Sbjct: 761 EELEEELESLEEALAKLKEEIEE 783
Score = 33.1 bits (76), Expect = 0.15
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
I +E+ EE E EE E+ ++ +E EE+ EE E E E E E
Sbjct: 332 IEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAE 391
Query: 228 VKQKKNEEEEEEEEV 242
+ + +NE EE + E+
Sbjct: 392 LAEIRNELEELKREI 406
Score = 32.8 bits (75), Expect = 0.18
Identities = 28/86 (32%), Positives = 41/86 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ +A EE KEE E + EE E + +EE E E + E E EE + E E E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +++ E+ +EE+ E EE
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEE 436
Score = 32.4 bits (74), Expect = 0.24
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ EE+ EE + + E +EE E ++ +E E+ E +E E +E+ EE E
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+ + + E E E E+ E EE
Sbjct: 376 ELFEALREELAELEAELAEIRNELEE 401
Score = 32.4 bits (74), Expect = 0.25
Identities = 27/86 (31%), Positives = 36/86 (41%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + E EE E E EE +E ++K EE EE E E E E E E
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+++ K E E EE + E E+
Sbjct: 397 NELEELKREIESLEERLERLSERLED 422
Score = 32.4 bits (74), Expect = 0.26
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E + E +E++ E EE +++ + E+ +EE K+ E E+E+ + E EE E
Sbjct: 387 ELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNE 446
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + E+ EE + L +LE E
Sbjct: 447 ELE---ELEEQLEELRDRLKELERELA 470
Score = 32.4 bits (74), Expect = 0.27
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+++ E EE EE EE +++ + E E E ++ + +E+E E EEE EE +++
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE--LEE 842
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K +E EEE EE+ +LEE +E
Sbjct: 843 KLDELEEELEELEKELEELKEE 864
Score = 32.0 bits (73), Expect = 0.31
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++ ++E+EE+ + EE+++ EE E + E EI E E + E E +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++ E E+ + +K E E
Sbjct: 414 ERLSERLEDLKEELKELEAELE 435
Score = 32.0 bits (73), Expect = 0.31
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ ++E + +E+ E+E+++ + + EE EE+ + E+E+E+ E E EE +EE
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++ E+EE E+ L +LEEE+E
Sbjct: 866 ---EELEAEKEELEDELKELEEEKEE 888
Score = 32.0 bits (73), Expect = 0.32
Identities = 25/71 (35%), Positives = 43/71 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE ++E E+E E E +EE+++ + + EE E + ++ E E+ + E E EEE E+ + +
Sbjct: 887 EELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETE 946
Query: 231 KKNEEEEEEEE 241
+ E E EEE
Sbjct: 947 LEREIERLEEE 957
Score = 31.6 bits (72), Expect = 0.38
Identities = 34/100 (34%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 155 PSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
E+ + E + +E+ EE E E E E + + +E EE EE KE+ E K
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336
Query: 215 EEGENEEEEEEEVVKQKK--NEEEEEEEEVLIKLEEEEEN 252
EE E E EE+ + E +EE EE L L EE E
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Score = 31.6 bits (72), Expect = 0.49
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK--EEGENEEEEEEEVV 228
EE + E++E+E+E E EEE ++ + + E E E + ++EIEK E E E + E +
Sbjct: 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE 925
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+ EEE EEE LE E E
Sbjct: 926 VELPELEEELEEEYEDTLETELER 949
Score = 31.2 bits (71), Expect = 0.52
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ ++ E EIEE E E EE ++ EEE EE EK+ E+ E+ E E+EE E +
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880
Query: 231 KKNEEEEEEEEVLIKLEEE 249
+ EE+EE EE L +LE E
Sbjct: 881 ELEEEKEELEEELRELESE 899
Score = 31.2 bits (71), Expect = 0.56
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++ +++EE E EE+ + + + EE EEE ++ E ++ E E E E+ +
Sbjct: 768 ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827
Query: 231 KKNEE-EEEEEEVLIKLEEEEEN 252
++ EE EEE EE+ KL+E EE
Sbjct: 828 QEIEELEEEIEELEEKLDELEEE 850
Score = 31.2 bits (71), Expect = 0.61
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE ++ ++ +EE E E E + +EE EE E+K + E+ E EE EE E
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
E E E+ +LE+E E
Sbjct: 811 ALERELESLEQRRERLEQEIEE 832
Score = 30.8 bits (70), Expect = 0.74
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+A EE+ E+ + EE EEE E +++ +E +E EE +EE E +E +EE E
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
Query: 226 EVVKQKKNEEEEEEE 240
E+ ++++ +EE EE
Sbjct: 783 ELEEKRQALQEELEE 797
Score = 30.5 bits (69), Expect = 0.93
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E+E+EE E E EE ++ + EEE E E+ E+ E E+ + + ++ EE
Sbjct: 743 EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802
Query: 237 EEEEEVLIKLEEEEEN 252
EE E L LE E E+
Sbjct: 803 EEAERRLDALERELES 818
Score = 30.5 bits (69), Expect = 0.96
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 8/90 (8%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE---EEEKKEEDEIEKEEGENEEEEEE-- 225
E + + +++EEE + E++ ++ EE EE +++ +E+++E EEE E+
Sbjct: 677 AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736
Query: 226 ---EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++++ E EEE EE+ +LEE EE
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEE 766
Score = 30.5 bits (69), Expect = 1.0
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE-EEEEVVK 229
EEE + +E + EE EE+++K+ +EE EE ++E +E E+ E E E E +
Sbjct: 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++ +E EE EE + +LEE+ +
Sbjct: 824 ERLEQEIEELEEEIEELEEKLDE 846
Score = 30.1 bits (68), Expect = 1.3
Identities = 29/80 (36%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E +KE +E+EEE + EEE+++ + + EE E+E ++ + E+E+ E EE +EE+++
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELR-EELEELQEELLEL 293
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
K+ EE E E L++ EE
Sbjct: 294 KEEIEELEGEISLLRERLEE 313
Score = 30.1 bits (68), Expect = 1.3
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 171 EEEKKEEDEIEEEENE------EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E ++ +E+EE + E E EE++ + + E EE + E +E+E+ E +E+ E
Sbjct: 274 SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIE 333
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ ++ E EE E L+ EE +
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKE 361
Score = 29.7 bits (67), Expect = 1.6
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+++ EDE++E E E+EE ++ + E E E +++ E E+ E + E EV
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ EE EEE E ++ E E E
Sbjct: 930 ELEEELEEEYEDTLETELERE 950
Score = 29.3 bits (66), Expect = 2.1
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE-----EEE 225
EE +++ + EE E E ++++ + E E E + E +E+++E EE E
Sbjct: 361 EELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERL 420
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +K++ E E E EE+ +LEE E
Sbjct: 421 EDLKEELKELEAELEELQTELEELNE 446
Score = 29.3 bits (66), Expect = 2.3
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++ + +E+E E EEE+++ + K +E EEE ++ E E+E+ + E EE E E K+
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAE---KE 873
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ +E +E EE +LEEE
Sbjct: 874 ELEDELKELEEEKEELEEELRE 895
Score = 28.1 bits (63), Expect = 5.6
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E + E E++EE + E +++ + K E E E + E+E+E+E + E E E +++
Sbjct: 894 RELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIER 953
Query: 231 KKNEEEEEEE 240
+ E E
Sbjct: 954 LEEEIEALGP 963
Score = 27.8 bits (62), Expect = 6.8
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE ++ E E+ E + E E+ ++ + E + E E + + E+ E E E+ E E+ ++
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ EEE E + L EE
Sbjct: 951 IERLEEEIEALGPVNLRAIEE 971
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 37.8 bits (88), Expect = 0.002
Identities = 16/55 (29%), Positives = 42/55 (76%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+EE++I+E+ + E+++K+ + ++ +EE+E+ +EE+E E+EE E+ ++++++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 35.9 bits (83), Expect = 0.009
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
K++ EEE + +E++ + K +E E E+ EEDE ++EE E EEEE+E+
Sbjct: 136 KRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDF------ 189
Query: 234 EEEEEEEE 241
++++++++
Sbjct: 190 DDDDDDDD 197
Score = 35.1 bits (81), Expect = 0.019
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EEEE+ +EK E + +E E E+ +EE+ +++ EEEEEE+E ++++++
Sbjct: 143 TEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 33.2 bits (76), Expect = 0.093
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
F E +EK E + +E E E+ ++ + EEEEEEEE+++ED + ++
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 32.0 bits (73), Expect = 0.22
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+F E E+ E +++E E E+ +E +K +EEEEEEEE ++ D+ + ++
Sbjct: 141 LFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 31.3 bits (71), Expect = 0.33
Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ +K+ E+E E+ +EE+E K++EEEEEEEE+ E+ + + ++ ++
Sbjct: 149 IDEKLSMLEKKLKELEAEDVDEEDE----KDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 31.3 bits (71), Expect = 0.35
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
E+I + E+ E E + +EE ++ + +EEEEEEE++ +D+ + ++
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 27.0 bits (60), Expect = 8.8
Identities = 15/49 (30%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
++ K+ E E +EE+E++EE +++ +EEE+E+ + ++D+ + EN
Sbjct: 158 KKLKELEAEDVDEEDEKDEE--EEEEEEEEDEDFDDDDDDDDDDYNAEN 204
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 38.9 bits (91), Expect = 0.002
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEV----KQKKNKEEEEEEEEKKEEDEIEK 214
PE + + K+E E E EEE+ + K E + + +K + I K
Sbjct: 833 PEELELINEE-QKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAK 891
Query: 215 E------EGENEEEEEEEVVKQKKNEEEEEEEE 241
+ +E +++E+ K+KK + E+ +EE
Sbjct: 892 DVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924
Score = 35.0 bits (81), Expect = 0.033
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKE-EEEEEEEKKEEDEIEKEEGENEE 221
+ E I E +EE EE ++ ++ + EE++ K+E E E EE
Sbjct: 803 RPQELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEE 862
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E + + + E + + + L KL ++
Sbjct: 863 EIQNINENKNEFVEFKNDPKKLNKLIIAKDV 893
Score = 28.5 bits (64), Expect = 4.2
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E I E + + N+ +E+ + + EEE + + + E E EE E
Sbjct: 782 EKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQRE---EMLMRPEELEL 838
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+QK ++E + E I+ EEE
Sbjct: 839 INEEQKNLKQEIKLELSEIQEAEEEIQ 865
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 38.3 bits (89), Expect = 0.003
Identities = 20/76 (26%), Positives = 44/76 (57%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E+ K+E+ + +E+ EE ++ K K+ +E+ +EK++E E + EE + EEE++
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Query: 226 EVVKQKKNEEEEEEEE 241
+ K+ ++ ++
Sbjct: 166 RERVRAKSRPKKPPKK 181
Score = 37.2 bits (86), Expect = 0.006
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK---KEEDEIEKEEGENEEEEEE 225
+E K E EEE+ +E+ + ++KK KE+ +EE + KEE + ++ E E+E+E+
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+V + + EEE++ E V K ++
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKP 178
Score = 33.7 bits (77), Expect = 0.077
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G + +E + E +++K KE+ +EE++KK+E E+ + +EE +E
Sbjct: 83 GGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Query: 230 QKKNEEEEEEEE 241
K+ E+E+E++
Sbjct: 143 PKEKEKEKEKKV 154
Score = 33.7 bits (77), Expect = 0.090
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ K +E+ E+ +E+E+ K+KK +E + EEEKK E K + +++ K+
Sbjct: 129 KDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKK 188
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ EEE++ + ++ + E
Sbjct: 189 EPPEEEKQRQAAREAVKGKPEE 210
Score = 32.9 bits (75), Expect = 0.13
Identities = 17/75 (22%), Positives = 45/75 (60%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
G + + + +E E + ++K+ ++ +EE+++KKE+ + E ++ + +EE +E+
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Query: 227 VVKQKKNEEEEEEEE 241
++K +E+E++ E
Sbjct: 141 RPPKEKEKEKEKKVE 155
Score = 32.6 bits (74), Expect = 0.21
Identities = 17/81 (20%), Positives = 43/81 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+EK++E E + EE + EE K+++ + ++ ++ K++ EEE++ + ++
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAARE 202
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ EE + + +EE++
Sbjct: 203 AVKGKPEEPDVNEEREKEEDD 223
Score = 32.2 bits (73), Expect = 0.25
Identities = 17/70 (24%), Positives = 40/70 (57%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+K+ + + + ++ K+ NK++E EEEK+ + E +G+ EE + E ++
Sbjct: 160 REEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219
Query: 231 KKNEEEEEEE 240
++++ ++ E
Sbjct: 220 EEDDGKDRET 229
Score = 30.2 bits (68), Expect = 0.94
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE----EEEEEEV 227
E K DE + + + K K +E + E +E+E EKE+ + E +E+ +E
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
K +K +EE +E+ + E+E+E
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 30.2 bits (68), Expect = 0.96
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+EK++E ++EE + EEE+ +++ + ++ KK+ +KE E E++ +
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K EE + E K E++ +
Sbjct: 205 KGKPEEPDVNEEREKEEDDGK 225
Score = 27.9 bits (62), Expect = 6.1
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEE-----VKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
E +E+K EE EEE + E K+ K+ +++E EE++ + E
Sbjct: 145 EKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAV 204
Query: 221 EEEEEEVVKQKKNEEEEEEEEVL 243
+ + EE ++ E+EE++ +
Sbjct: 205 KGKPEEPDVNEEREKEEDDGKDR 227
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 38.1 bits (89), Expect = 0.003
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 15/90 (16%)
Query: 171 EEEKKEE-------DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK------EEG 217
E E+KEE +I E+ E+ EEV + E + EEEE+K+ + +EK +
Sbjct: 97 EREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKSYLKIV 156
Query: 218 ENEEEEEEEVVK--QKKNEEEEEEEEVLIK 245
+ E + + + K QK++EE ++E +I+
Sbjct: 157 KEENKSLQRLAKALQKESEERTQDETKMIE 186
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 38.0 bits (88), Expect = 0.003
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 1/90 (1%)
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
+A S + E+ EE E D IE E+ + ++ + E EE
Sbjct: 345 AAESVVQVADRDGESTPAVEETSEAD-IEREQPGDLAGQAPAAHQVDAEAASAAPEEPAA 403
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
E +E E E + + +E
Sbjct: 404 LASEAHDETEPEVPEKAAPIPDPAKPDELA 433
Score = 31.5 bits (71), Expect = 0.47
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE-EEEKKEEDEIEKEEGENEEEEEEE 226
+A E + D E EE + +E+ + + +++ E EE
Sbjct: 344 VAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAA 403
Query: 227 VVKQKKNEEEEEEEE 241
+ + +E E E E
Sbjct: 404 LASEAHDETEPEVPE 418
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 37.0 bits (86), Expect = 0.003
Identities = 31/77 (40%), Positives = 44/77 (57%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
EE+E EE + EE+ ++K +EE EEE EKK+E+E KE E +E+EE K K +
Sbjct: 24 EEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFV 83
Query: 236 EEEEEEVLIKLEEEEEN 252
EEE + +EE
Sbjct: 84 VEEEGTDKLSADEESNE 100
Score = 34.3 bits (79), Expect = 0.030
Identities = 28/67 (41%), Positives = 44/67 (65%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
EE++ ++++ + EEEE EE+K+ +E + E + EEE EEE K+K+ EE +E EE K
Sbjct: 11 LEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Query: 246 LEEEEEN 252
+EE E
Sbjct: 71 EQEEYEK 77
Score = 34.3 bits (79), Expect = 0.030
Identities = 23/78 (29%), Positives = 49/78 (62%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E++++ E + E +EEE +++ ++++EEEE K+ E++ KE+ E E+ + VV++
Sbjct: 27 EREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEE 86
Query: 231 KKNEEEEEEEEVLIKLEE 248
+ ++ +EE LE+
Sbjct: 87 EGTDKLSADEESNELLED 104
Score = 33.5 bits (77), Expect = 0.050
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A EEK+ + E E EE EE +K EE+ E E K+EE+ E+ E + EEEE +E
Sbjct: 9 AKLEEKQARRQQREAEEEEREE---RKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+Q + E+EE E+ + EEE
Sbjct: 66 EQARKEQEEYEKLKSSFVVEEEGT 89
Score = 32.7 bits (75), Expect = 0.11
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
+I ++ + EE + ++ + E EEEE ++ + EK EGE +EEEE E ++KK EEEE
Sbjct: 2 KIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEER 61
Query: 239 EEEVLIKLEEEEE 251
+E +E+EE
Sbjct: 62 KEREEQARKEQEE 74
Score = 30.1 bits (68), Expect = 0.84
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
K E GE +++EE E E E+ +EEEE K+++ + +E+EE +K + EE ++
Sbjct: 33 KLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKL 92
Query: 223 EEEE 226
+E
Sbjct: 93 SADE 96
Score = 29.3 bits (66), Expect = 1.4
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E EEK+E + EEEE EEE E K+++ + +E EE+ +KE++E EK + EEE
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEG 88
Query: 226 E 226
Sbjct: 89 T 89
Score = 27.4 bits (61), Expect = 6.5
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
K + + EE++ ++++ E E+EE E ++ EE+ ++K EEE EEE K EEE +
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 35.7 bits (83), Expect = 0.004
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 49 AGKTVLDVGTGTGKSIL--------LQGHGVDHHSFC---TKVHPLDHYAPQYLILEVIQ 97
G VLD+G GTG + + GVD + + P+ + +Q
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR---ITFVQ 57
Query: 98 NKI-ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVM 144
+ ++L E D + G LL ++D++ LKP G +
Sbjct: 58 GDAPDALDLLEGFDAVFIGGGGGDLLE--LLDALA----SLLKPGGRL 99
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 37.9 bits (89), Expect = 0.004
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE E + +EE EE E + K+ E E +E+K D++ EG + E +
Sbjct: 386 VPVEELLEIEGFDEETVEELRE-RAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAE 444
Query: 229 KQKKNEEEEEEEEV--LIKLEEEEE 251
K K E+ E+ V LI +E +EE
Sbjct: 445 KGIKTLEDLAEQAVDELIDIEGDEE 469
Score = 34.5 bits (80), Expect = 0.041
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK-EEDEIEKEEGE 218
E E IA ++ +EE EE+ + + +EE EE ++ ++ +E E
Sbjct: 360 EALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALA 419
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
EE+ ++++ E + E+ KL E+
Sbjct: 420 QEEKLADDLL-----SLEGLDRELAFKLAEKG 446
Score = 32.1 bits (74), Expect = 0.23
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE---- 225
E D E + +EE + + EE +E+ + EG +EE EE
Sbjct: 349 AEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRER 408
Query: 226 --EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++ + +EE+ + L+ LE +
Sbjct: 409 AKEALETEALAQEEKLADDLLSLEGLDRE 437
Score = 29.1 bits (66), Expect = 2.4
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+EEK +D + E + E K + + E+ ++ DE+ EG+ E+
Sbjct: 415 TEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEEK 470
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 38.2 bits (88), Expect = 0.004
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 155 PSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
S E+ K W ++A + + ++D + E EEE+ Q K E+ E+++ + E
Sbjct: 560 ESEFEELKKKWSSLAQLKSRFQKDATLDS-IEGEEELIQDDEKGNFEDLEDEENSSDNEM 618
Query: 215 EE-------GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE ENEE +E + ++ E ++EE+ E EE
Sbjct: 619 EESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEER 662
Score = 33.2 bits (75), Expect = 0.15
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 167 NIAGEEEKKEEDEIEEEE-------NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
N E+++ + E EE E EE + + E EE KKEE E E
Sbjct: 603 NFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEER 662
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+ E+++V + + + EE+ + + E E
Sbjct: 663 GDPEKKDVDWYTEEKRKIEEQLKINRSEFET 693
Score = 29.3 bits (65), Expect = 2.2
Identities = 18/78 (23%), Positives = 35/78 (44%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
++ E E+ ++ E E EE K++ E EE E+ +++ E + EE+
Sbjct: 625 SVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQL 684
Query: 227 VVKQKKNEEEEEEEEVLI 244
+ + + E E V+I
Sbjct: 685 KINRSEFETMVPESRVVI 702
Score = 27.8 bits (61), Expect = 7.7
Identities = 15/66 (22%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+ E +E+ EI++ + +++ K++EE+E + + E+E G+ E+E E+ +
Sbjct: 1005 LPVPPECREKHEIKDR-------IVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRI 1057
Query: 228 VKQKKN 233
K +
Sbjct: 1058 RKTIHD 1063
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 36.9 bits (86), Expect = 0.005
Identities = 23/81 (28%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++E +++D + + EE+EE +++K K + + +K + +IE++E E+EE+ + +
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Query: 231 KKNEEEEE--EEEVLIKLEEE 249
+++ E+E E+ L KL+EE
Sbjct: 85 EEDTPEDELAEKLRLRKLQEE 105
Score = 31.9 bits (73), Expect = 0.26
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV-------VKQ 230
D+ E E + K ++E+E+++ K+ + E++E + EE+ + +K
Sbjct: 5 DDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKA 64
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K E+E+ + E K E E
Sbjct: 65 KIEEKEKAKREKEEKGLRELEE 86
Score = 28.1 bits (63), Expect = 4.7
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE------GENEEEEEEEVVKQKKNEEEE 237
++E+E++ K+ +EEE++++E+E K + + EE+ +++ EE+
Sbjct: 25 DDEDEDD----DVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKG 80
Query: 238 EEEEVLIKLEEEE 250
E E+E
Sbjct: 81 LRELEEDTPEDEL 93
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 37.3 bits (86), Expect = 0.006
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
K +D + + N EE +++ E E + +DE +K E + E V +Q +E
Sbjct: 79 KTKDNVVADVNNGEE--FLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSE 136
Query: 235 EEEEEEEVLIKLEEEEEN 252
+E +EE EEN
Sbjct: 137 KERIASICTKIIEEPEEN 154
Score = 30.0 bits (67), Expect = 1.4
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
GEE E + E + + K+++++ EE+K + K++ ++E+E +
Sbjct: 91 GEEFLSESESEASLEIDSDI-----KDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICT 145
Query: 230 QKKNEEEE 237
+ E EE
Sbjct: 146 KIIEEPEE 153
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 37.3 bits (87), Expect = 0.006
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + E + + EIE+E E E++ K+KK +E + +E + + ++ E E +E++
Sbjct: 401 EELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIA 460
Query: 226 EVVKQ----KKNEEEEEEEEVLIKLEEE 249
EVV + + E+E+E L+ LE
Sbjct: 461 EVVARWTGIPVAKLLEDEKEKLLNLERR 488
Score = 28.8 bits (65), Expect = 2.9
Identities = 17/66 (25%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE--EGENEEEEEEEVVKQKKNEEE 236
+E ++ EE +E++++ + E E+E ++E+DE EK+ + + +E +K+ E E
Sbjct: 394 RLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAE 453
Query: 237 EEEEEV 242
+E+++
Sbjct: 454 VDEDDI 459
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 36.6 bits (84), Expect = 0.006
Identities = 20/70 (28%), Positives = 45/70 (64%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+E+ E+ E EE EE E ++++ K +E E++E++E + E+ E ++ E E+++Q
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184
Query: 232 KNEEEEEEEE 241
++E E ++++
Sbjct: 185 ESETESDDDK 194
Score = 32.0 bits (72), Expect = 0.20
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLE 247
+E++++ + + EE EE + E E + +E E++EE+E E +Q E+ ++ E +I+ +
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184
Query: 248 EEE 250
E E
Sbjct: 185 ESE 187
Score = 29.6 bits (66), Expect = 1.2
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
E + E +++ DE E++E +E E +Q ++ ++ E E E+DE E E +++ E+
Sbjct: 140 ERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 28.1 bits (62), Expect = 3.8
Identities = 19/66 (28%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
+++++K+KK+ +E+ EK ++ E EE E E EE + +++++EE+E E +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEE-RMEWERREEKIDEREDQEEQEREREEQTI 169
Query: 247 EEEEEN 252
EE+ ++
Sbjct: 170 EEQSDD 175
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 36.3 bits (84), Expect = 0.007
Identities = 26/69 (37%), Positives = 44/69 (63%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+E EEE+E + K +EEE++ + EE E EKE GE E E+ E ++++ +EEE+EE
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95
Query: 242 VLIKLEEEE 250
++++E
Sbjct: 96 EAEDVKQQE 104
Score = 34.0 bits (78), Expect = 0.032
Identities = 24/68 (35%), Positives = 45/68 (66%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
K +E E E+E ++E + K+++ K E EE E++KE E E+E+ ++E+EE +++K
Sbjct: 35 KADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKE 94
Query: 234 EEEEEEEE 241
EE E+ ++
Sbjct: 95 EEAEDVKQ 102
Score = 33.3 bits (76), Expect = 0.075
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEEK+ DE + + EE++ ++ KE+E E E+++ E +++E +EEE+EE +
Sbjct: 40 EEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAED 99
Query: 231 KKNEEEEE 238
K +E
Sbjct: 100 VKQQEVFS 107
Score = 31.0 bits (70), Expect = 0.36
Identities = 19/71 (26%), Positives = 43/71 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ +++E+ EE +E+E + ++ E++E+E+ ++E ++EE E+ +++E K+
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Query: 231 KKNEEEEEEEE 241
KK +E EE
Sbjct: 111 KKPFKEMNLEE 121
Score = 31.0 bits (70), Expect = 0.37
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLI 244
+E+EE K+ ++ + +EEE+K IE EE E E+E E + ++E+EE
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQK----IEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 245 KLEEEEEN 252
+ EEE E+
Sbjct: 92 EKEEEAED 99
Score = 30.6 bits (69), Expect = 0.50
Identities = 25/76 (32%), Positives = 41/76 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE+K E E E+E E E ++ +++E+EE ++EE E E E+ + +E + K
Sbjct: 54 EEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKP 113
Query: 231 KKNEEEEEEEEVLIKL 246
K EE+ + L L
Sbjct: 114 FKEMNLEEKIDFLAHL 129
Score = 29.4 bits (66), Expect = 1.4
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + E K +E+E + E E E+E + + + E+ E+++KEE E+E+ E E+ ++
Sbjct: 43 KENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQ 102
Query: 226 EVVKQKK 232
+ V K
Sbjct: 103 QEVFSFK 109
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 37.0 bits (86), Expect = 0.008
Identities = 15/77 (19%), Positives = 41/77 (53%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E + E + +++ ++ + K KK+K++ ++++ E E +E EN++ +++
Sbjct: 2 MNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKK 61
Query: 229 KQKKNEEEEEEEEVLIK 245
K+KK +++ E +
Sbjct: 62 KKKKKKKKNLGEAYDLA 78
Score = 33.5 bits (77), Expect = 0.087
Identities = 15/83 (18%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
++ KK+ D+ + E E ++ +NK+ +++++KK++ + +K GE + + V
Sbjct: 25 KNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKK-KKKKNLGEAYDLAYDLPV 83
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
++ + E+E
Sbjct: 84 VWSSAAFQDNSHIRKLGNWPEQE 106
Score = 28.9 bits (65), Expect = 2.7
Identities = 12/70 (17%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEE---EEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ E E +++++ KQK K++ + ++ + + E E E ++ K+K
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 232 KNEEEEEEEE 241
K +++++++
Sbjct: 61 KKKKKKKKKN 70
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 37.0 bits (85), Expect = 0.008
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG---ENEEEEEEEVV 228
E+++EED +E + KE + EE EE I+ EG + EEEE ++
Sbjct: 394 EDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLR 453
Query: 229 KQKKNEEEEEEEEVLIKLEEEE 250
+ + E+E+ E +L+ E
Sbjct: 454 EFRDMEKEDREFPDEAELQPSE 475
Score = 28.5 bits (63), Expect = 3.8
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ +++ KE D EE +EE + + EE EEE+++ E E E+ E +E
Sbjct: 410 MSAIDDDDPKENDN-EEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDE 468
Score = 28.1 bits (62), Expect = 5.4
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEE-----DEIEEEENEEEEEVKQKKNK---------- 197
+ Y+PE + + E D+ E+ K K
Sbjct: 334 TLDEYAPEGEDLRSDYDEDFEYDGLTTVRIDDHGFLPGREQTSKKAAVPKGTSFYQAKWA 393
Query: 198 -EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+EEEE+ + +E+ +++ +E + E ++ E +L EEE
Sbjct: 394 EDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEE 448
Score = 27.4 bits (60), Expect = 8.9
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 166 ENIAGEEEKKEED-EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E +AG+EE +D E EE + EEEE + ++ ++ E+E+ E +E E++ E
Sbjct: 424 EEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSE 475
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 36.5 bits (84), Expect = 0.009
Identities = 11/76 (14%), Positives = 22/76 (28%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + +E E +E E + E + + E ++
Sbjct: 164 SSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAP 223
Query: 226 EVVKQKKNEEEEEEEE 241
Q+ E E+E E
Sbjct: 224 SPNTQQAVEHEDEPTE 239
Score = 36.5 bits (84), Expect = 0.010
Identities = 13/72 (18%), Positives = 22/72 (30%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G E + N++ Q +++ EE E E E + E
Sbjct: 145 GPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
Query: 230 QKKNEEEEEEEE 241
Q +E E +
Sbjct: 205 QSPPDEPGEPQS 216
Score = 34.6 bits (79), Expect = 0.036
Identities = 5/71 (7%), Positives = 9/71 (12%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EE + E E E
Sbjct: 100 VGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSP 159
Query: 230 QKKNEEEEEEE 240
++ +
Sbjct: 160 NQQPSSFLQPS 170
Score = 33.8 bits (77), Expect = 0.076
Identities = 8/81 (9%), Positives = 18/81 (22%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
++ + E + + E ++
Sbjct: 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFL 167
Query: 230 QKKNEEEEEEEEVLIKLEEEE 250
Q +E+ EE E E +
Sbjct: 168 QPSHEDSPEEPEPPTSEPEPD 188
Score = 31.9 bits (72), Expect = 0.28
Identities = 11/87 (12%), Positives = 29/87 (33%)
Query: 154 APSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
+P+ P F + EE + E ++ + + + + ++ E +
Sbjct: 158 SPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSP 217
Query: 214 KEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ ++ V + + E E E
Sbjct: 218 TPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 31.9 bits (72), Expect = 0.29
Identities = 9/70 (12%), Positives = 21/70 (30%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E E E + + E + +E + + ++ N ++ E +
Sbjct: 179 EPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPT 238
Query: 232 KNEEEEEEEE 241
+ E E
Sbjct: 239 EPEREGPPFP 248
Score = 31.9 bits (72), Expect = 0.29
Identities = 8/66 (12%), Positives = 16/66 (24%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+ E + E EE + + +E + + + EE
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENT 123
Query: 236 EEEEEE 241
E
Sbjct: 124 SGSSPE 129
Score = 31.5 bits (71), Expect = 0.36
Identities = 8/71 (11%), Positives = 16/71 (22%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E + E E ++ + E+ E +
Sbjct: 121 ENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEP 180
Query: 231 KKNEEEEEEEE 241
+E E +
Sbjct: 181 PTSEPEPDSPG 191
Score = 31.5 bits (71), Expect = 0.38
Identities = 6/82 (7%), Positives = 18/82 (21%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+ + EE+ + E + + E
Sbjct: 93 SGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPP 152
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+ N ++ ++ E+
Sbjct: 153 ESHNPSPNQQPSSFLQPSHEDS 174
Score = 31.5 bits (71), Expect = 0.38
Identities = 9/73 (12%), Positives = 22/73 (30%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E+ + E + E EE ++++ + + + EE +
Sbjct: 60 AVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLS 119
Query: 229 KQKKNEEEEEEEE 241
+ + E
Sbjct: 120 PENTSGSSPESPA 132
Score = 31.5 bits (71), Expect = 0.44
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 1/76 (1%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
EN +G + + E ++ ++ E+ EE
Sbjct: 120 PENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQ-PSHEDSPEEP 178
Query: 225 EEVVKQKKNEEEEEEE 240
E + + + +
Sbjct: 179 EPPTSEPEPDSPGPPQ 194
Score = 31.1 bits (70), Expect = 0.50
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 2/72 (2%)
Query: 171 EEEKKEEDEIEEEENEE--EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+E E N++ + E+ E E +E E +
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGP 192
Query: 229 KQKKNEEEEEEE 240
Q +
Sbjct: 193 PQSETPTSSPPP 204
Score = 30.7 bits (69), Expect = 0.78
Identities = 7/76 (9%), Positives = 13/76 (17%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E+ E E + + +
Sbjct: 111 AEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPS 170
Query: 226 EVVKQKKNEEEEEEEE 241
++ E E E
Sbjct: 171 HEDSPEEPEPPTSEPE 186
Score = 29.9 bits (67), Expect = 1.1
Identities = 8/71 (11%), Positives = 11/71 (15%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E E +EE E +E E
Sbjct: 69 TESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSP 128
Query: 231 KKNEEEEEEEE 241
+
Sbjct: 129 ESPASHSPPPS 139
Score = 29.6 bits (66), Expect = 1.6
Identities = 8/71 (11%), Positives = 15/71 (21%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ E D EE+ E+ ++ + E E
Sbjct: 65 GHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTS 124
Query: 231 KKNEEEEEEEE 241
+ E
Sbjct: 125 GSSPESPASHS 135
Score = 29.6 bits (66), Expect = 1.6
Identities = 8/76 (10%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED----EIEKEEGENEEEEEE 225
E+ +E + E + Q + + +E ++ + ++
Sbjct: 171 HEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQA 230
Query: 226 EVVKQKKNEEEEEEEE 241
+ + E E E
Sbjct: 231 VEHEDEPTEPEREGPP 246
Score = 29.6 bits (66), Expect = 1.9
Identities = 10/88 (11%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE-----EEEKKEEDEIEKEEGENEEEE 223
++ + +E+ E + E E + + E + + E
Sbjct: 155 HNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEP 214
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ +Q + ++ E + E E
Sbjct: 215 QSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 28.0 bits (62), Expect = 4.6
Identities = 6/72 (8%), Positives = 12/72 (16%), Gaps = 1/72 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEE-EEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ + E+ E+ E + E E E
Sbjct: 70 ESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129
Query: 229 KQKKNEEEEEEE 240
+
Sbjct: 130 SPASHSPPPSPP 141
Score = 28.0 bits (62), Expect = 5.1
Identities = 8/71 (11%), Positives = 11/71 (15%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+EE+ + EE E E
Sbjct: 84 KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSH 143
Query: 231 KKNEEEEEEEE 241
E E
Sbjct: 144 PGPHEPAPPES 154
Score = 27.2 bits (60), Expect = 9.4
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---EGENEEEEEEEVVKQKKNEEEEE 238
+ E+ ++ + E EE + E E + G E + EE
Sbjct: 56 PQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELA 115
Query: 239 EE 240
Sbjct: 116 SG 117
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 36.8 bits (85), Expect = 0.010
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
GEEE +ED++EE +++E+E + ++ E E + E EEDE E + NE +
Sbjct: 646 EGEEE--DEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
++ + + L + E+E
Sbjct: 704 VRRALPKVLNLPDALDGGDSEDEE 727
Score = 32.5 bits (74), Expect = 0.22
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE-EEKKEEDEIEKEEGENEEEEEE-EVVK 229
E K ++ E E E+E+++++ + E+E E E+ + E E + E+GE +E+E++ E +
Sbjct: 636 ENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Query: 230 QKKNEEEEEEEEVLIKLE 247
++ + L
Sbjct: 696 GVVPIDKAVRRALPKVLN 713
Score = 32.5 bits (74), Expect = 0.22
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 185 NEEEEEVKQKKNKEEEEEEE-EKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+E + +Q EEE+E++ E+ ++DE E E E+ E E E + + +E+E++ E
Sbjct: 635 DENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 31.0 bits (70), Expect = 0.59
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 180 IEEEENEEEEEV----KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
IE+ NE + + K +NK ++ E +EEDE + EE +++E+E E + + +E
Sbjct: 617 IEDVTNEGLQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAI---EDSES 673
Query: 236 EEEEEEVLIKLEEEEE 251
E E + + +E+E+
Sbjct: 674 ESESDGEDGEEDEQED 689
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 36.2 bits (84), Expect = 0.010
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEE---EEEKKEEDEIEKEEG-----ENEEEEEEE 226
E ++E +E+ KEE ++ E K EE + EG E EEEEEE
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE 168
Query: 227 VVKQKKNEEEEEEEE 241
+ EEEEE +E
Sbjct: 169 IA-----EEEEEVKE 178
Score = 32.3 bits (74), Expect = 0.15
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E+ E +EE+++ K +++ E + E +EE E EEEE
Sbjct: 115 ENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEE 174
Query: 226 EVV 228
EV
Sbjct: 175 EVK 177
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 36.5 bits (84), Expect = 0.010
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 171 EEEKKEEDEIEEEENEEEE--EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE + + +EE+ ++++ E +Q++ E E E +E E E + E+E EEE V
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQ 260
Query: 229 KQKKNEEEEEEEE 241
+ + +E +++
Sbjct: 261 SDQDDLPDESDDD 273
Score = 34.1 bits (78), Expect = 0.066
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI----EKEEGENEE 221
E + E +E + E E+EE+ + Q E+EE+ E + E E E E + E
Sbjct: 192 EMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRES 251
Query: 222 EEEEEVVKQKKNEEEEEEEE 241
E EE + Q ++ +E +
Sbjct: 252 ESGEEEMVQSDQDDLPDESD 271
Score = 31.5 bits (71), Expect = 0.40
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
E+ ++ + E E+EE ++D+ + E E + E E E + +E E + EEE
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 31.1 bits (70), Expect = 0.54
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E+E++ E E E +E +E + + E EEE + + + +E +++ E E +
Sbjct: 224 EQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGAR 282
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 35.4 bits (82), Expect = 0.012
Identities = 21/66 (31%), Positives = 42/66 (63%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLI 244
+++E++ ++ +E EE E+ ++EE E E+ E ENE EEE++ + + + + EE +++ L
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 245 KLEEEE 250
E E
Sbjct: 62 AQAEFE 67
Score = 32.3 bits (74), Expect = 0.15
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+E+K EE + EE E E+ E ++ + +E EEE E ++E+ EI + E + EE ++
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 27.7 bits (62), Expect = 4.6
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ EE EE E E+ EEE E ++ + + E EEE+++ E E + EE +++ +
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63
Query: 226 EVVKQKKNEEEEEEEE 241
+ + E E EE
Sbjct: 64 AEFENLRKRTEREREE 79
Score = 27.3 bits (61), Expect = 6.7
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
K+ K EE + EE +E ++ E+EE E EE EEE NE EEE++E+ + EE
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEE-------NELEEEQQEIAELEAQLEE 54
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 36.1 bits (83), Expect = 0.012
Identities = 17/78 (21%), Positives = 39/78 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E K + +E+++V + + +E E+ + E K+ DE + +++ + ++ K
Sbjct: 255 QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKA 314
Query: 231 KKNEEEEEEEEVLIKLEE 248
+ E E++E E K E
Sbjct: 315 SEKEAEDKELEAQKKREP 332
Score = 31.5 bits (71), Expect = 0.45
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A KE+ ++ E + E E+ + + K +EE + K + K+E + E+E E
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAE--- 320
Query: 229 KQKKNEEEEEEEEV 242
K+ E +++ E V
Sbjct: 321 -DKELEAQKKREPV 333
Score = 30.4 bits (68), Expect = 0.94
Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE----- 223
++++ E + ++E + KE+++ E +K E E + E + +EE
Sbjct: 242 NADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAK 301
Query: 224 ---EEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
++ ++ K E+E E++ L ++ E
Sbjct: 302 DHKAFDLKQESKASEKEAEDKELEAQKKREP 332
Score = 30.4 bits (68), Expect = 1.0
Identities = 12/71 (16%), Positives = 38/71 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +K+E ++ + E + +EE + K+ + + ++E K ++ +++ +++ E V +
Sbjct: 277 ENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAED 336
Query: 231 KKNEEEEEEEE 241
+ + + E +
Sbjct: 337 LQKTKPQVEAQ 347
Score = 30.0 bits (67), Expect = 1.3
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE--DEIEKEEGENEEEEEEEV 227
+ +ED+ E + E E Q + K+ +EE + K+ ++++E +E+E E++
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKE 323
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEE 251
++ +K E E+ K + E +
Sbjct: 324 LEAQKKREPVAEDLQKTKPQVEAQ 347
Score = 29.6 bits (66), Expect = 1.5
Identities = 14/81 (17%), Positives = 42/81 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E + +ED ++ +EE + KQ + +++ + ++ + +++E +++E + + K
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+E+++V + E E
Sbjct: 264 ADTSSPKEDKQVAENQKREIE 284
Score = 28.0 bits (62), Expect = 5.5
Identities = 14/88 (15%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A ++ +D +++ +E ++ ++ KN + + KE+ ++ + + E+ + E+
Sbjct: 232 AQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIK 291
Query: 229 K-----QKKNEEEEEEEEVLIKLEEEEE 251
K K + + + + K E+E
Sbjct: 292 KNDEEALKAKDHKAFDLKQESKASEKEA 319
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 36.2 bits (84), Expect = 0.012
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVK 229
EE +++ E E+ E +EEVK++ K+ ++ E + + +E G NEE E+ E +
Sbjct: 469 EEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPE--VDTYLLLEELGINEETYEKLEALL 526
Query: 230 QKKN 233
KKN
Sbjct: 527 AKKN 530
Score = 34.3 bits (79), Expect = 0.053
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 180 IEEEENEEEEEVKQKKNKEEEE--EEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
EE + EE KQ KE EE +++ E ++ EN+EE ++EV K+ K E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Query: 238 EEEEVLIKLEEEEE 251
+ +L +L EE
Sbjct: 504 DTYLLLEELGINEE 517
Score = 30.1 bits (68), Expect = 1.2
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 193 QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+K +EE + ++ + I KE + EE E V ++ + E +EEV ++ ++ +
Sbjct: 440 KKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVK 498
Score = 28.9 bits (65), Expect = 3.3
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQK--KNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
E I E+ ++ ++E EE+++K + E+ E +E+ K+E + ++
Sbjct: 446 EAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEV------KKEVPKKVKK 499
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEE 248
EV EE EE KLE
Sbjct: 500 IPEVDTYLLLEELGINEETYEKLEA 524
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 36.2 bits (84), Expect = 0.013
Identities = 19/82 (23%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE--DEIEKEEGENEEEEEEEVVKQ 230
E++ +E +E E++++ + +E+EE ++ +E+ E+E++ +E++ + E+ Q
Sbjct: 206 EEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQ 265
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ E +E+ K+EEE
Sbjct: 266 AIELQREFNKEIKEKVEEERNG 287
Score = 35.0 bits (81), Expect = 0.029
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 171 EEEKKEEDEIEEEENEEEEEV--KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EEE++ E ++E+ E ++ + E +E EK+ E E+E+ E ++ EE++
Sbjct: 185 EEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL- 243
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+ E E + E KL+ E
Sbjct: 244 ---RQELERQAEAHEQKLKNE 261
Score = 33.1 bits (76), Expect = 0.15
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EEE E E +K+K+ EE + E++ +E +E E++ E ++K+ ++ EE+
Sbjct: 185 EEEEELERALKEKR--EELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEK 242
Query: 242 VLIKLEEEEE 251
+ +LE + E
Sbjct: 243 LRQELERQAE 252
Score = 28.5 bits (64), Expect = 3.9
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEE---EEKKEE--DEIEKEEGENEEEEEEEVVKQKK 232
+EE ++ +++ + K +EEEE E +EK+EE ++E+E E +E + KQ +
Sbjct: 166 ASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLR 225
Query: 233 NEEEEEEEEVLIKLEEE 249
E E E+EE+ K EE+
Sbjct: 226 LEFEREKEELRKKYEEK 242
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 36.3 bits (84), Expect = 0.014
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 174 KKEEDEIEEEENEEEEEVK--QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
++ I EEN + + Q +K E + K E++ +E + EE + ++
Sbjct: 875 GDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEE--LMKR 932
Query: 232 KNEEEEE 238
E +++
Sbjct: 933 AKEYQDK 939
Score = 35.9 bits (83), Expect = 0.018
Identities = 12/72 (16%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 179 EIEEEENEEEEEVKQKKN--KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E E + + ++ ++N K + E + + + + + NEE+ Q++
Sbjct: 869 EYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSA-----QERMPGA 923
Query: 237 EEEEEVLIKLEE 248
+ EE++ + +E
Sbjct: 924 DSPEELMKRAKE 935
Score = 31.6 bits (72), Expect = 0.42
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 189 EEVKQK-KNKEEEEEEEEKKEEDEIEKEEGE--------NEEEEEEEVVKQKKNEEEEEE 239
+VK + N E E ++ I EE + E + + K EE+
Sbjct: 857 NDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSA 916
Query: 240 EEVLIKLEEEEEN 252
+E + + EE
Sbjct: 917 QERMPGADSPEEL 929
Score = 31.6 bits (72), Expect = 0.43
Identities = 12/88 (13%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 166 ENIAGEEEKKEEDEIEEE-ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ A E++ ++ I + +++ + V + + + + + EE+ ++ + E + +
Sbjct: 841 GHQAIIEQRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHK 900
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E + Q EE+ + + + E
Sbjct: 901 TEALSQNNKYNEEKSAQERMPGADSPEE 928
Score = 31.3 bits (71), Expect = 0.56
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
+ K E + NEE+ ++ + EE ++ +E
Sbjct: 893 SELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKE 935
Score = 30.9 bits (70), Expect = 0.84
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 167 NIAGEEE--KKEEDEIEEEENEEEEEVKQKKNKEEEE----------EEEEKKEEDEIEK 214
+I GEE K + E++ E K N+E+ EE K+ ++ +K
Sbjct: 880 SIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDK 939
Query: 215 EEG 217
+G
Sbjct: 940 HKG 942
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 35.6 bits (82), Expect = 0.014
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE E + + E+NE+E++ K+ ++ ++ EEEE + E + +EE E E+
Sbjct: 210 EELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAA 269
Query: 231 KKNEEEEEEEE 241
+ + ++ + +
Sbjct: 270 EASADDTPDSD 280
Score = 34.0 bits (78), Expect = 0.058
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ EE+ + + E+ E++ + E E ++ EEE + ++ EE E
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEME 262
Score = 34.0 bits (78), Expect = 0.058
Identities = 12/76 (15%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+E+ +E + E + ++ +E+E++++ EE+E + +E+ + + E
Sbjct: 208 MAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASS-----EEME 262
Query: 236 EEEEEEVLIKLEEEEE 251
E E ++ +
Sbjct: 263 SGEMEAAEASADDTPD 278
Score = 32.9 bits (75), Expect = 0.13
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
A E+ ++ED+ +E+E++++ E +EE + E+ + EE E+ E E
Sbjct: 216 PESADSEDNEDEDDPKEDEDDDQGE------EEESGSSDSLSEDSDASSEEMESGEMEAA 269
Query: 226 EVVKQKKNEEEEE 238
E + ++
Sbjct: 270 EASADDTPDSDDA 282
Score = 28.2 bits (63), Expect = 3.7
Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE-------DEIEKEEGENEEEEE 224
+ +E + E + E+ E + ++E++++ E++E ++ + E E E
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266
Query: 225 EEVVKQKKNEEEEEEE 240
E + + ++
Sbjct: 267 EAAEASADDTPDSDDA 282
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 36.1 bits (83), Expect = 0.015
Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE-EEEEVVKQK 231
+ + +++E ++++ + K K +++EE + + +E ++E + + VK+
Sbjct: 12 NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKS 71
Query: 232 KNEEEEEEEEVLIKLEEEE 250
EE ++ EVL EE +
Sbjct: 72 TKEESKQLLEVLKTKEEHQ 90
Score = 35.7 bits (82), Expect = 0.024
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKN----------KEEEEEEEEKKEEDEIEKEEGENE 220
+EK +E + ++ E +E+V KK +E+ +E K DE++K E E
Sbjct: 17 MQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKSTKE-E 75
Query: 221 EEEEEEVVKQKKNEEEEEEEEVLIK 245
++ EV+K K+ ++E + E+L K
Sbjct: 76 SKQLLEVLKTKEEHQKEIQYEILQK 100
Score = 33.4 bits (76), Expect = 0.12
Identities = 22/90 (24%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKE-EEEEEEEKKEEDEIEKEEGE 218
+ E + ++E+ D ++ E+ + K E ++ +EE K+ E+ K + E
Sbjct: 29 NRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKSTKEESKQLLEVLKTKEE 88
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
+++E + E++ QK E +E +L KLE+
Sbjct: 89 HQKEIQYEIL-QKTIPSFEPKESILKKLED 117
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 36.2 bits (84), Expect = 0.015
Identities = 38/102 (37%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKN--------------KEEEEEEEEKKEEDE 211
EN A EE + E E EEE +EEE E KKN E ++ ++E K E +
Sbjct: 389 ENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFK 448
Query: 212 IEKEEGENEEEEEEEVVKQKKNEEEEEE-EEVLIKLEEEEEN 252
+KE E EE E+EE K +K + + E K EEEEE
Sbjct: 449 EKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEEL 490
Score = 35.0 bits (81), Expect = 0.032
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ + E E E E + +K+NK E +E++E EE+E+E EE E+ +++K+
Sbjct: 419 NVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRS 478
Query: 232 KNEEEEEEEEVLIK 245
+ ++EEEEE L +
Sbjct: 479 EKAQKEEEEEELDE 492
Score = 35.0 bits (81), Expect = 0.037
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE----DEIEKEEGENEEEE 223
+ ++ K ++ ++EEN +K + E ++EE E E+E EE +EEE
Sbjct: 353 MLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEEN 412
Query: 224 EEEVVKQKKN----EEEEEEEEVLIKLEEEEEN 252
EE K E E+E KL++E +N
Sbjct: 413 EEPSKKNVGRRKFGPENGEKEAESKKLKKENKN 445
Score = 33.9 bits (78), Expect = 0.089
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI---EKEEGENEEEEEEE 226
E KKEE++ E EE E E +++ ++EE EE +K E E E E ++ ++
Sbjct: 382 AEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKK 441
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
K + E++E +EE ++ EEE +
Sbjct: 442 ENKNEFKEKKESDEEEELEDEEEAKV 467
Score = 32.7 bits (75), Expect = 0.17
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE-EGENEEEEEEEVV 228
EE++ E+ + EEE+ +++E+ +N ++ K +E E ++E G + +
Sbjct: 324 SEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAE 383
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+KK E + E EE+ +LE EEE
Sbjct: 384 ARKKEENDAEIEELRRELEGEEE 406
Score = 30.4 bits (69), Expect = 0.90
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+EKKE DE EE E+EEE +V++ NK + E+ +KEE EE E +EE
Sbjct: 448 KEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEE-----EEEELDEENPWLKTTSS 502
Query: 232 KN 233
Sbjct: 503 VG 504
Score = 29.6 bits (67), Expect = 1.6
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EK+ E + ++EN+ E K+ KE +EEEE + EE+ ++ + E+
Sbjct: 427 PENGEKEAESKKLKKENKNEF----KEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQ 482
Query: 229 KQKKNEEEEEEEEVL 243
K+++ EE +EE L
Sbjct: 483 KEEEEEELDEENPWL 497
Score = 29.6 bits (67), Expect = 1.7
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE-------GE 218
E +G K E + EE + ++ +E E EEE +EE+E ++ G
Sbjct: 368 EENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGP 427
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E+E E K KK + E +E+ EEE E+
Sbjct: 428 ENGEKEAESKKLKKENKNEFKEKKESDEEEELED 461
Score = 28.1 bits (63), Expect = 6.1
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN--EEEE 223
N + +K + E EEEE +EE + + + +++ ++ K + +
Sbjct: 471 ANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKA 530
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEE 248
+V K+KK E+ + ++ LI E+
Sbjct: 531 AVKVKKKKKKEKSIDLDDDLIDEED 555
Score = 27.7 bits (62), Expect = 7.3
Identities = 19/69 (27%), Positives = 31/69 (44%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
++ KKE +E+ E +EE + + +E + E+ K EK + E EEEE +E
Sbjct: 436 SKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENP 495
Query: 230 QKKNEEEEE 238
K
Sbjct: 496 WLKTTSSVG 504
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 35.8 bits (83), Expect = 0.016
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 8/57 (14%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ G +E+ E+ +E+ E EEEE ++ E E++ EEDE E+EE +++E ++
Sbjct: 271 VVGGDEEDLEELLEKAEEEEEE--------DDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 32.7 bits (75), Expect = 0.13
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
+ I+E ++ + K K E +EE E+ +EK E E EE++ E +E+E
Sbjct: 250 EAIKEVIKKKGGDFKVKGEPEVVGGDEED-LEELLEKAEEEEEEDDYSES-----EDEDE 303
Query: 238 EEEEVLIKLEEEEEN 252
E+E+ + +++E +
Sbjct: 304 EDEDEEEEEDDDEGD 318
Score = 28.1 bits (63), Expect = 4.8
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 7/49 (14%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
E + EE++EED+ E E+E+EE+ E+EEEEE+ E D+
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEED-------EDEEEEEDDDEGDK 319
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 36.0 bits (84), Expect = 0.016
Identities = 18/81 (22%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E++ +E + + +E + +EE+++KK K +EEE++ +E ++ ++ + ++E +E++K+
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKE 592
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ ++ +K E E
Sbjct: 593 LRQLQKGGYAS--VKAHELIE 611
Score = 34.0 bits (79), Expect = 0.073
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEEEENE--EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE KK E +E+ NE E +++ +++ EE E +E E KEE E ++E+ +E
Sbjct: 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE 564
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ E E+E ++ + + ++E +
Sbjct: 565 DKLLEEAEKEAQQAIKEAKKEAD 587
Score = 32.9 bits (76), Expect = 0.17
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
IA EE + E E + EE E + +K +E EE++E+ +EE++ EE E E
Sbjct: 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE------- 574
Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
+Q E ++E +E++ +L + +
Sbjct: 575 AQQAIKEAKKEADEIIKELRQLQ 597
Score = 32.5 bits (75), Expect = 0.22
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 172 EEKKE--EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EEKKE ++E ++ E E+E +Q + ++E +E KE +++K + + E +
Sbjct: 554 EEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEAR 613
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++ N+ E++E+ K +E++E
Sbjct: 614 KRLNKANEKKEKKKKKQKEKQEE 636
Score = 31.7 bits (73), Expect = 0.35
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 16/102 (15%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE--------KKEEDEIEKEEG 217
+ E KE ++++EE E++E+++++++K EE E+E KKE DEI KE
Sbjct: 535 KAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR 594
Query: 218 ENE--------EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + E E K+ E++E++ + E++EE
Sbjct: 595 QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 35.1 bits (81), Expect = 0.017
Identities = 17/70 (24%), Positives = 42/70 (60%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G + + E+ + K+ + +EEE++E++KK+E + EK+E ++++E+ E
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 230 QKKNEEEEEE 239
KK ++++++
Sbjct: 183 SKKKKKKKKK 192
Score = 28.1 bits (63), Expect = 3.7
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E E E E++ K E E E EEEE+ K+KK E ++E++E
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKE 169
Score = 27.0 bits (60), Expect = 7.6
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
E +K + E+E + EE+E ++++ + E ++E++ K KK + E
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVE 179
Query: 238 EEEE 241
+
Sbjct: 180 PKGS 183
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 35.8 bits (82), Expect = 0.017
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN EEE+KEE E EE EE E V + + K + + EE ++E E E E EE
Sbjct: 107 ENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKE--------EKEPEPEE 158
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
E ++ + EE E + KL+ E
Sbjct: 159 EEKPKRGSLEENNGEFMTHKLKHTE 183
Score = 35.8 bits (82), Expect = 0.019
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E+ E E V++++ +E EE EE +E + + K E +N+ + EE K++K E EEEE+
Sbjct: 102 EDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEK 161
Query: 242 VLIKLEEE 249
EE
Sbjct: 162 PKRGSLEE 169
Score = 30.0 bits (67), Expect = 1.2
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
E + ++ ++ +E+ E E EE+E E+ E EE EE E V + + + +
Sbjct: 83 EFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWR 142
Query: 239 EEEVLIKLEEEEE 251
+ E K E+E E
Sbjct: 143 DAEECQKEEKEPE 155
Score = 29.6 bits (66), Expect = 1.7
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ E +E E++KQK+ + E EE KK+ +E K E E+ ++E +K EEEE+
Sbjct: 195 QVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRR 254
Query: 241 EVLIKLEEEEE 251
E
Sbjct: 255 LKEEIERRRAE 265
Score = 28.1 bits (62), Expect = 4.5
Identities = 18/81 (22%), Positives = 46/81 (56%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E EK ++ + E EE + K+++ ++ EEEE++++++E +++ E EE+ + +
Sbjct: 201 EFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIE 260
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ E E+ + + + E+
Sbjct: 261 RRRAEAAEKRQKVPEDGLSED 281
Score = 28.1 bits (62), Expect = 5.0
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E+++E + + E ++ + E E ++EE E +EE E EE E ++K
Sbjct: 79 ERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQK 138
Query: 233 NEEEEEEEEVLIKLEEEEE 251
N+ + EE + E E E
Sbjct: 139 NDWRDAEECQKEEKEPEPE 157
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 33.9 bits (78), Expect = 0.018
Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 21/108 (19%)
Query: 52 TVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVEL------ 105
VLD+G GTG L G + A + +NVE+
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDI---SPVALELARKAAAALLADNVEVLKGDAE 57
Query: 106 ------PEKVDIIVSEWMGFYL--LHESMIDSVIFARDKFLKPEGVMY 145
E D+I+S+ +L ++ LKP GV+
Sbjct: 58 ELPPEADESFDVIISDPPLHHLVEDLARFLEEARRL----LKPGGVLV 101
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 35.0 bits (81), Expect = 0.018
Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 192 KQKKNKEE-EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
KQ + E+ E EEEEK++E+E E+ + E+ +KQK E ++EE+E
Sbjct: 114 KQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDE 164
Score = 30.8 bits (70), Expect = 0.45
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
E EEEE+ +EE E ++ E+ K K+ ++EE+EE
Sbjct: 122 LEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 28.1 bits (63), Expect = 3.8
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E+ EEEE + ++ +E + + E K++ + ++EE+E ++ +
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 27.3 bits (61), Expect = 6.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
E+ + E+ EE+ +EEE E + K E+ K++ E++KEE E
Sbjct: 120 EQLEREE--EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDE 164
Score = 26.9 bits (60), Expect = 8.9
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
EEEK++E+E E + +Q + K ++ +E +K+E++E+
Sbjct: 126 EEEKRDEEERERLLRAAKSRSEQSRLK-QKAKEMQKEEDEEMRH 168
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 36.1 bits (83), Expect = 0.018
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E + E+E+ E E ++E + EE +E E EDE E + + E+ E+ + ++
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELES 988
Query: 231 KKNEEEE 237
K +
Sbjct: 989 KAAYDSR 995
Score = 33.8 bits (77), Expect = 0.093
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+E + EEE E E ++ E +E+EE + +++ ++E EN+ +EE+ + E
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELES 988
Query: 236 EEEEEE 241
+ +
Sbjct: 989 KAAYDS 994
Score = 33.4 bits (76), Expect = 0.11
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
++E +E EEEV + + ++E +E ++E+ E E +E+E E + ++ E+ +E E
Sbjct: 928 DDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELE 987
Score = 31.1 bits (70), Expect = 0.54
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E +DE +E + +EE + + E+E E + EED + +E E++ + K+
Sbjct: 940 EYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKR 999
Query: 231 KK 232
+K
Sbjct: 1000 RK 1001
Score = 29.6 bits (66), Expect = 2.1
Identities = 12/56 (21%), Positives = 33/56 (58%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E A +++ +E + +EE +E E++ + +++ + +EE+ ++ DE+E + +
Sbjct: 940 EYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 28.8 bits (64), Expect = 3.1
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
++E++E EE + ++E +E E++E ++ + E+E E +++ E+ +E
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDEL 986
Query: 241 E 241
E
Sbjct: 987 E 987
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 35.7 bits (83), Expect = 0.021
Identities = 14/82 (17%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
++ + E +++++EE +E E+EE + + +ED+ + ++ ++ E +
Sbjct: 113 EPRYDDAYRDLEEDDDDDEESDE-------EDEESSKSEDDEDDDDDDDDDDIATRERSL 165
Query: 228 VKQKKNEEEEEEEEVLIKLEEE 249
++++ E EE+ L +
Sbjct: 166 ERRRRRREWEEKRAELEFYYYQ 187
Score = 32.3 bits (74), Expect = 0.26
Identities = 15/84 (17%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+N+ G ++ D+ + EE ++E ++ EE++++ +E DE ++E ++E++E++
Sbjct: 90 DNVFGSDQVVIFDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDD 149
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEE 249
+ +++++++ + E
Sbjct: 150 D-------DDDDDDDIATRERSLE 166
Score = 31.9 bits (73), Expect = 0.32
Identities = 10/58 (17%), Positives = 31/58 (53%)
Query: 195 KNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EEE ++E + +D E +++++EE + ++ ++ E++E++ +++
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Score = 28.0 bits (63), Expect = 5.0
Identities = 16/85 (18%), Positives = 41/85 (48%), Gaps = 16/85 (18%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
P + ++ +++ EE + E+EE+ + E++E++++ ++D+I E
Sbjct: 114 PRYDDAYRDLEEDDDDDEESDEEDEESSKS---------EDDEDDDDDDDDDDIATRERS 164
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVL 243
E ++++ E EE+ E+
Sbjct: 165 LER-------RRRRREWEEKRAELE 182
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 35.4 bits (82), Expect = 0.021
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 26/105 (24%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKN------------------------- 196
++ E EEE++ + E EEN + E ++ ++
Sbjct: 285 YQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNP 344
Query: 197 -KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+++EEEE+E +EE+E E+E E E EE ++ + +
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPND 389
Score = 34.3 bits (79), Expect = 0.050
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 22/85 (25%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE----------------------IEKEE 216
E EEEE EEEE ++ + +E + E + E +++
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQK 347
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEE 241
E EE+E+EE ++++ EE E EE
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 33.1 bits (76), Expect = 0.12
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 27/83 (32%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV---------------------------K 229
+ EEEEEEE++EE E EN + E EV +
Sbjct: 286 QLEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPE 345
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
QK EEE+E+EE + EE EE
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEP 368
Score = 29.3 bits (66), Expect = 2.4
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E E+ E E EEEEE + ++E+E EEEE++E +E+ KEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEE 203
Score = 27.7 bits (62), Expect = 5.8
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 209 EDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
E E+ + E E EEEE E ++ + EEEEEEE + EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 27.3 bits (61), Expect = 9.0
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+E EEEEEE++ + E++EGE EEEEE E V
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 27.3 bits (61), Expect = 9.5
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ EEEEEEE+ E + E E E EEEE EEV K+
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKE 202
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 35.6 bits (82), Expect = 0.022
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---------EGENEEEEEEEVVKQKK 232
E++ EEE+++KK KEE+ +E+E K+ +KE + ++ K +K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Query: 233 NEEEEEEEE 241
+ E+E E
Sbjct: 69 RDVEDENPE 77
Score = 27.9 bits (62), Expect = 6.9
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E E ++K EEE E ++KKEE EKE + + ++E K +
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQ 48
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 34.5 bits (79), Expect = 0.022
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+EEE+ + + EE+EEE + ED +++E+ E EE EEE K +
Sbjct: 19 DEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSS 74
Score = 32.2 bits (73), Expect = 0.14
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 201 EEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
++EEE + E EE E E E+ E+ + ++ E EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAAS 62
Score = 30.3 bits (68), Expect = 0.65
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
EEE + E EE+EEE E + EE+EE EE +EE
Sbjct: 20 EEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 30.3 bits (68), Expect = 0.70
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ + EE E +EEE E+ E+ ++++E EE EEE + ++ +E +
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETISIP 81
Score = 29.1 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
++EE EE EE+EE+ E+ E +E + E EE EE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 28.7 bits (64), Expect = 2.1
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
+K + ++EEE+ + +E+E++E EE E+ E +++EE EE EE
Sbjct: 10 LKVRPPPTKDEEEDWDSQAEEVEEDE---EEMEDWEDSLDEEDEEAEEVEEE 58
Score = 27.6 bits (61), Expect = 4.9
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
K +++ ++E + ++ EE EE+E++ ED + + E+EE EE E
Sbjct: 4 KGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVE 56
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 34.7 bits (80), Expect = 0.025
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEE-----EEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
+ + + D+ + E+ E++K+++ +E+E EEEEK E+E +EE
Sbjct: 124 SSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREE 179
Score = 33.5 bits (77), Expect = 0.059
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE- 225
I ++ D E + +++EE + K+ + EE+ ++ + + ++++ ++
Sbjct: 79 AIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDD 138
Query: 226 -----------EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E+ K KK EE+E E K EEE+
Sbjct: 139 DSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKA 176
Score = 32.0 bits (73), Expect = 0.25
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE----------IEKEEGENEE 221
E K++ E + ++ ++ + +++ ++ EDE I+KE E +E
Sbjct: 104 EIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKE 163
Query: 222 EEEEEVVKQKKNEEEEEEEEVL 243
EEEE + EE+ EEE+L
Sbjct: 164 REEEE---KAAEEEKAREEEIL 182
Score = 29.7 bits (67), Expect = 1.1
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ + + + ++D +++ +E + ++ K ++E EEK+ E+E + E E EEE
Sbjct: 122 SDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 27.8 bits (62), Expect = 5.1
Identities = 16/82 (19%), Positives = 36/82 (43%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G E++ + ++ E E E K KK + E+ +K + E E+++EE+E K
Sbjct: 49 GTEDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRK 108
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+ + + + + + +
Sbjct: 109 RIEEDARNSDADDSDSSSDSDS 130
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 35.2 bits (82), Expect = 0.026
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE+ + E ++ E+EEEEE+E +E E E+VL K + +
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAK 229
Score = 31.7 bits (73), Expect = 0.39
Identities = 18/85 (21%), Positives = 40/85 (47%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
GE +E + + N EE+ EE +++E+++EE++ + +E E E
Sbjct: 160 ENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEEN 252
V +K ++ +++ E++ E
Sbjct: 220 VLEKFKALAKQYKKLRKAQEKKVEG 244
Score = 30.9 bits (71), Expect = 0.70
Identities = 17/83 (20%), Positives = 40/83 (48%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
++ E E+ ++DE EEEE +E ++ E E+ EK + + ++ +E++
Sbjct: 183 AHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKV 242
Query: 226 EVVKQKKNEEEEEEEEVLIKLEE 248
E + + + E++ +L+
Sbjct: 243 EGRLAQHKKYAKLREKLKEELKS 265
Score = 30.9 bits (71), Expect = 0.75
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
EE + ++ + + + + EEE E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 27.8 bits (63), Expect = 5.6
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E+ +++ + E E +++ EEEEE+E E E E
Sbjct: 168 ELID---GFVDPNAEEDPAHVGSELEELDDD-----EDEEEEEDENDDSLAADESELPEK 219
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+ + + KQ K + +E++V +L + ++
Sbjct: 220 VLEKFKALAKQYKKLRKAQEKKVEGRLAQHKK 251
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 34.3 bits (79), Expect = 0.027
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E E ++ E +EE + + ++ +EEE + ++++ E+ + E E+ ++ E
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEA 62
Query: 236 EEEEEEVLIKLEEE 249
E E + K+ E
Sbjct: 63 EAEFDREFEKMMAE 76
Score = 28.5 bits (64), Expect = 2.3
Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 199 EEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE---EEEEVLIKLEEEE 250
E E ++ +E++E+ +E+ ++E +EEEV ++EE EEE++ + +EEE
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 27.7 bits (62), Expect = 4.5
Identities = 14/60 (23%), Positives = 34/60 (56%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E+ EE ++++ +EEE + ++ + +++ EEE+ ++E+E++ E + E E
Sbjct: 12 EDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 35.1 bits (81), Expect = 0.027
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 21/111 (18%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENE-----EEEEVKQKKNKEEEEEEEEKKE----EDEI 212
++ + +EE+ E++ EE + E K+ E E EE KE ++
Sbjct: 108 YEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADV 167
Query: 213 ------------EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EK+E E EEEE+E ++K E EE+ E+ E+
Sbjct: 168 DVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSED 218
Score = 33.2 bits (76), Expect = 0.11
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ +++EEEEEE+++E I+ E EE+ + +E++EE+
Sbjct: 175 ALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDN 223
Score = 29.3 bits (66), Expect = 1.6
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E+ E EEEE E+E +K E EE+ + ++++ E +E +N+ + +
Sbjct: 180 EKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAKP 239
Query: 236 EEEEEEVLIKLEEEE 250
++ K E
Sbjct: 240 TSILKKSAAKRSEAP 254
Score = 28.6 bits (64), Expect = 2.8
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 201 EEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE--EEEEEVLIKLEEEEE 251
E +K +E++ E+ E E EEE + +K+ +N + E EVL +LEE +E
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKE 159
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 35.2 bits (81), Expect = 0.028
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 171 EEEKKEEDEIEEEENE-EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+E E +I EE + +E+ + + +E+++ E+DE KEE E +++ +++ K
Sbjct: 307 DEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRK 366
Query: 230 QKKNEE 235
+K N
Sbjct: 367 RKVNPV 372
Score = 31.3 bits (71), Expect = 0.40
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+EEE ++E EIE EE EEE V Q N+E
Sbjct: 240 VQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 30.9 bits (70), Expect = 0.54
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 16/87 (18%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE---------EE 225
+EE+ I++E + E E EE EE+ ++ + +E
Sbjct: 241 QEEESIDDELDVLREI-------EAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTT 293
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
VK + + +E L + + EE
Sbjct: 294 RRVKMRPVRAKPSDEPSLPESDIHEEI 320
Score = 28.6 bits (64), Expect = 3.5
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 24/97 (24%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKK----------------NKEEEEEEEEKKEEDEI 212
AG +EE + N+E V +KK +E E +EI
Sbjct: 261 AGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMRPVRAKPSDEPSLPESDIHEEI 320
Query: 213 EKEE--------GENEEEEEEEVVKQKKNEEEEEEEE 241
K + G +E++ + + +EE E++
Sbjct: 321 PKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKK 357
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 35.0 bits (80), Expect = 0.028
Identities = 15/63 (23%), Positives = 39/63 (61%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E +K KE EEE E++++DE + ++ ++E+E++++ + +E+E++++ L
Sbjct: 35 ENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSS 94
Query: 249 EEE 251
++
Sbjct: 95 ADD 97
Score = 31.5 bits (71), Expect = 0.37
Identities = 13/50 (26%), Positives = 32/50 (64%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
K+ ++ +E EE+ E+E + EE ++++++E+E ++E++E+E
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 31.1 bits (70), Expect = 0.48
Identities = 13/43 (30%), Positives = 31/43 (72%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
K+ E+E EEE+++EE+ +++E++++++ E+DE E ++
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 30.7 bits (69), Expect = 0.76
Identities = 10/40 (25%), Positives = 31/40 (77%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
+E +EE EE+++EE+++ ++++++++++++ +EDE
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 30.3 bits (68), Expect = 0.87
Identities = 12/52 (23%), Positives = 37/52 (71%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
K+E+ I + E EEE ++++ +EE+++++ E+++ + ++ + ++E+E++
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDD 84
Score = 30.0 bits (67), Expect = 1.1
Identities = 12/50 (24%), Positives = 33/50 (66%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
+K E EEE EEE++ ++ + +++E+E++ ++D+ + E+ ++++
Sbjct: 39 RKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
Score = 30.0 bits (67), Expect = 1.1
Identities = 10/62 (16%), Positives = 38/62 (61%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
++ EE+ +EEE+++EE++ E+++++++ +++++ + ++ ++ + +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETD 102
Query: 233 NE 234
NE
Sbjct: 103 NE 104
Score = 29.6 bits (66), Expect = 1.7
Identities = 12/42 (28%), Positives = 32/42 (76%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
A EE +EED+ EE+++++++E + + +++E++E++ ++D
Sbjct: 45 AEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDD 86
Score = 29.6 bits (66), Expect = 1.7
Identities = 9/55 (16%), Positives = 34/55 (61%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
E +++ + EEE EE+ +++E + ++ + +E+++++ + +E++++ +
Sbjct: 35 ENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89
Score = 28.8 bits (64), Expect = 3.1
Identities = 10/58 (17%), Positives = 38/58 (65%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+E EEE ++ ++E++++++++ E+D+ + ++ ++E+E++++ + ++ E
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 28.4 bits (63), Expect = 4.2
Identities = 13/54 (24%), Positives = 34/54 (62%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E ++ + EEE EEE+ ++ + ++++E+E+ ++D+ E +E E++++
Sbjct: 35 ENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
Score = 27.7 bits (61), Expect = 6.8
Identities = 8/56 (14%), Positives = 34/56 (60%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
G+E ++E E E+++ E++++ + +++++++E E+++ + ++ ++
Sbjct: 42 GKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97
Score = 27.7 bits (61), Expect = 7.2
Identities = 9/48 (18%), Positives = 30/48 (62%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
KK + +E +EE E+++ E +++++++ + +++++E++E
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDE 80
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 35.4 bits (81), Expect = 0.030
Identities = 18/77 (23%), Positives = 34/77 (44%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W N+ E+ EE E ++ + +K+ + E+ + E E+ E E E E+
Sbjct: 333 WRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDY 392
Query: 225 EEVVKQKKNEEEEEEEE 241
E+ K +++E E
Sbjct: 393 EDENDHSKRICDDDELE 409
Score = 33.0 bits (75), Expect = 0.15
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
E+ NEE E + E++ + EK E EN EE E ++ ++ E+E +
Sbjct: 339 EKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDH 398
Query: 241 EVLIKLEEEEEN 252
I ++E EN
Sbjct: 399 SKRICDDDELEN 410
Score = 31.5 bits (71), Expect = 0.45
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+K+ D+I E E E ++++ EEE E+ + E D ++ ++E E +
Sbjct: 358 VPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Query: 231 K 231
K
Sbjct: 418 K 418
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 34.4 bits (79), Expect = 0.032
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVKQKKNEEEEEEEEV 242
E+E+ + K K N E + + + E K + + E +++ Q+K EE+++ ++
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKK 76
Query: 243 LIKLE 247
+ L+
Sbjct: 77 KVPLQ 81
Score = 27.8 bits (62), Expect = 5.3
Identities = 10/60 (16%), Positives = 27/60 (45%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
E ++ + +++ E+ K N +++ E+ K E + +E++ K+K +
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Score = 27.1 bits (60), Expect = 8.6
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 199 EEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E E+ + K++ E N +++ E K + E + L E++EE
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEE 69
Score = 27.1 bits (60), Expect = 9.1
Identities = 10/55 (18%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+K E + + E VK+ ++E++EE+++ K++ + + + ++E
Sbjct: 40 DKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK-VPLQVNPAQLFVDDEY 93
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 34.4 bits (79), Expect = 0.032
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A + KK E E++ NE E +K E ++ E+E E EE
Sbjct: 124 AKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEA---- 179
Query: 229 KQKKNEEEEE 238
EE E
Sbjct: 180 ---PAEESAE 186
Score = 33.2 bits (76), Expect = 0.063
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E + E + E + E+E +V KK+K + ++ KK E EK+ E E V +KK
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEA----VAEKK 151
Query: 233 NEEEEEEEEVLIKLEEEEE 251
E EEEE
Sbjct: 152 AAEAAAVAAEEAAAAEEEE 170
Score = 31.7 bits (72), Expect = 0.19
Identities = 16/68 (23%), Positives = 26/68 (38%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
K + + ++ + E ++K N+ E EKK + E EEEE +
Sbjct: 118 KDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
Query: 234 EEEEEEEE 241
E EE
Sbjct: 178 EAPAEESA 185
Score = 28.2 bits (63), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EEK+ + ++++ + ++ +K E E++ E + E EK+ E EE +
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAE 167
Query: 232 KNEEEEEE 239
EEE EE
Sbjct: 168 --EEEAEE 173
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 35.0 bits (81), Expect = 0.034
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
EE ++E +++ +E E ++ + E E ++ E+ I + E E E E E ++
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
++ E EEE E ++EE E
Sbjct: 768 ERLEEAEEELAEAEAEIEELEA 789
Score = 34.3 bits (79), Expect = 0.060
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ E K +E E E EE+ E ++ E E E E+ E + E E E EE+
Sbjct: 323 AQLEELESKLDELAEELAELEEKLEELKE-ELESLEAELEELEAELEELESRLEELEEQL 381
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E ++ K + E + + ++E E
Sbjct: 382 ETLRSKVAQLELQIASLNNEIERLEA 407
Score = 32.3 bits (74), Expect = 0.24
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+A E + E+ + E E + ++ + + EE E K +E E E EE+
Sbjct: 290 LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEK 345
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +K++ E E EE+ +LEE E
Sbjct: 346 LEELKEELESLEAELEELEAELEELES 372
Score = 31.6 bits (72), Expect = 0.42
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ EEK EE +E E EEE E QK+ E +++ +I +E N E + E
Sbjct: 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
Query: 226 EV------VKQKKNEEEEEEEEVLIKLEEEEEN 252
E+ ++ K +E EE E+ KLEE +E
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Score = 31.6 bits (72), Expect = 0.47
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 171 EEEKKEEDEIEEEENEEEEEV------------KQKKNKEEEEEEEEKKEEDEIEKEEGE 218
E + + ++E + E+ ++++ ++E EE +K EE E+++ + E
Sbjct: 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE 441
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EE EEE Q++ E EE E L + EE E
Sbjct: 442 LEELEEELEELQEELERLEEALEELREELEEAEQ 475
Score = 31.6 bits (72), Expect = 0.51
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
EI + + E+ E + EE E + E + K E EE E +E+ E KEE E+
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
Query: 220 EEEEEEEVVKQKKNEEEEEEE 240
E E EE+ + + E EE
Sbjct: 356 LEAELEELEAELEELESRLEE 376
Score = 31.2 bits (71), Expect = 0.61
Identities = 22/80 (27%), Positives = 41/80 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE ++ + EE + + +++ + E E E+ ++ ++ KE E E E EE +
Sbjct: 711 EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL 770
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
++ EEE E E I+ E +
Sbjct: 771 EEAEEELAEAEAEIEELEAQ 790
Score = 30.8 bits (70), Expect = 0.70
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
EE +KE + E + E++ + + + E + ++ E ++E+ E + +E EE ++
Sbjct: 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE 343
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+K E +EE E + +LEE E
Sbjct: 344 EKLEELKEELESLEAELEELEA 365
Score = 29.6 bits (67), Expect = 1.6
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE ++E +E++EE E EEE+++ E +E EEK EE +E E E E EE ++ +
Sbjct: 235 EELREELEELQEELKEAEEELEEL--TAELQELEEKLEELRLEVSELEEEIEELQKELYA 292
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
NE E++ I E
Sbjct: 293 LANEISRLEQQKQILRERLA 312
Score = 29.6 bits (67), Expect = 2.1
Identities = 18/84 (21%), Positives = 27/84 (32%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E + E I E E+ +Q + E+ E + E+ E E E E
Sbjct: 822 LRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNE 881
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+ E L +L EE
Sbjct: 882 RASLEEALALLRSELEELSEELRE 905
Score = 29.3 bits (66), Expect = 2.5
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE----E 226
E E +E+EE E E E++ N+ EE E+E+ E E E +
Sbjct: 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELR 914
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++ E+ + E L LE +N
Sbjct: 915 RELEELREKLAQLELRLEGLEVRIDN 940
Score = 28.9 bits (65), Expect = 3.0
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ ++ E ++EE E++ +E EE E EEK EE + E E E E EE E +++
Sbjct: 317 QLEELEAQLEELESKLDEL------AEELAELEEKLEELKEELESLEAELEELEAELEEL 370
Query: 232 KNEEEEEEEEV 242
++ EE EE++
Sbjct: 371 ESRLEELEEQL 381
Score = 28.1 bits (63), Expect = 4.9
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE-----EE 226
+K+ +E E + EE + Q + E E E ++ E+ +E+ E E E E E
Sbjct: 730 ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA 789
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
++Q K E + E + E
Sbjct: 790 QIEQLKEELKALREALDELRAELTL 814
Score = 28.1 bits (63), Expect = 5.4
Identities = 20/80 (25%), Positives = 31/80 (38%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E +E +E EE EE E + + + E + E+ K+E + + E E +
Sbjct: 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
E E E I E
Sbjct: 820 ANLRERLESLERRIAATERR 839
Score = 28.1 bits (63), Expect = 6.0
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE------------ 213
EE + E +E+E E EE+++ ++K + E + +EIE
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDR 415
Query: 214 ----KEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++E E ++ EE ++ E EE EE L +L+EE E
Sbjct: 416 RERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
>gnl|CDD|225137 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 34.6 bits (80), Expect = 0.035
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 8 DHDEEEYFES----YTDLEVHKLMLDDTVR-NEAYRAAICDNPNIFAGKTVLDVGTGTG- 61
D+ E + FE+ + D E L Y + G VLDVG G G
Sbjct: 13 DYKELDKFEALASRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGI 72
Query: 62 --KSILLQG---HGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENV-ELPEKVDIIVSE 115
+ + G G+D +V L H + ++ Q +E++ + D++
Sbjct: 73 LSEPLARLGASVTGIDASEKPIEVAKL-HALESGVNIDYRQATVEDLASAGGQFDVVTCM 131
Query: 116 WMGFYLLHESMIDSVIFARDKFLKPEGVM 144
+ L H +S + A K +KP G++
Sbjct: 132 EV---LEHVPDPESFLRACAKLVKPGGIL 157
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 34.6 bits (80), Expect = 0.035
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED--EIEKEEGENEEEEEEE 226
K ++E E E EEEEE E EE EE+ EED + + + EE +E+E
Sbjct: 140 KPKNEFELELPEEEEE--------EPEEMEEELEEDAADRDARKRAAEEAKEQE 185
Score = 31.2 bits (71), Expect = 0.53
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
EE++EE E EEE EE+ + + + EE +E+++
Sbjct: 151 EEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 29.6 bits (67), Expect = 1.7
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
EEE+ EE E E EE+ + + +++ +E +E+EE ++
Sbjct: 153 EEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
Score = 28.5 bits (64), Expect = 3.2
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 176 EEDEIEEEENEEEEEVKQKKN----------KEEEEEEEEKKEEDEIEKEEGENE-EEEE 224
E+ E EE+ + K K + E E E EE+E E EE E E EE+
Sbjct: 109 AAMEVGETPREEKLREDEAKLSLKSGLASLPKPKNEFELELPEEEEEEPEEMEEELEEDA 168
Query: 225 EEVVKQKKNEEEEEEEE 241
+ +K+ EE +E+E
Sbjct: 169 ADRDARKRAAEEAKEQE 185
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 34.8 bits (80), Expect = 0.036
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
++ K ++ + ++ E +E + +E E E+E K EE + + E EE+ + E
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYS 205
Query: 230 QKK----NEEEEEEEEVLIKLEEEEE 251
Q + +EEE E + E+
Sbjct: 206 QYDGMLVDSSDEEEGEEAPSINYNED 231
Score = 34.4 bits (79), Expect = 0.049
Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 152 HSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKK----NKEEEEEEEEKK 207
S+ E + + EE +++ + EEEE+ + E+ Q + +EEE EE
Sbjct: 165 ESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAP 224
Query: 208 EEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E +E + E+ + + + EE K +E++ +
Sbjct: 225 SINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTS 269
Score = 31.7 bits (72), Expect = 0.39
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 11/82 (13%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE-----------G 217
+ +KKE E ++++EEE E + + EE E++ EE+E E
Sbjct: 155 TKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVDS 214
Query: 218 ENEEEEEEEVVKQKKNEEEEEE 239
+EEE EE + E E
Sbjct: 215 SDEEEGEEAPSINYNEDTSESE 236
Score = 31.0 bits (70), Expect = 0.65
Identities = 17/83 (20%), Positives = 39/83 (46%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
++ K+++ E + ++EEE + + + EE E+ +++E E + E+ + + +V
Sbjct: 153 KKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLV 212
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
EE EE + + E
Sbjct: 213 DSSDEEEGEEAPSINYNEDTSES 235
Score = 28.6 bits (64), Expect = 3.7
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E+ E+ + + + + +EEE E N E+ E E E D E + EE
Sbjct: 197 EDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEES 256
Query: 226 EVVKQKKNEEEEEE 239
+K E++
Sbjct: 257 SPPSKKPKEKKTSS 270
Score = 27.9 bits (62), Expect = 5.1
Identities = 16/61 (26%), Positives = 36/61 (59%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
E K KK K +++ ++ KK+E + ++ + EE E E+ K +++ E++ ++E + E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Query: 250 E 250
+
Sbjct: 203 D 203
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 34.8 bits (80), Expect = 0.039
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A EE +K +EIE+E E +E+KQ +++ E ++++ + +E E +E+
Sbjct: 77 AKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTD 136
Query: 229 KQKKNEEEEEEEEVLIKLEEEE 250
K K +E EE+ E L + ++ E
Sbjct: 137 KSKHIDEREEQVEKLEEQKKAE 158
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 34.7 bits (80), Expect = 0.041
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE------------DEIEKEEGE 218
EEE+ E E EEE E V +K+ K+ EE E +EE EIEK E E
Sbjct: 399 EEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESE 458
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E K +K+ E + + +LE+E E
Sbjct: 459 LERFRREVRDKVRKDREIRARDRRIERLEKELEE 492
Score = 32.8 bits (75), Expect = 0.17
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E ++ +E++ E E E EE E+ + + ++ EE ++ E+E + + E EE + E
Sbjct: 392 EALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKRE 451
Query: 226 EVVKQKKNEE--EEEEEEVLIKLEEEE 250
+ + E E ++V E
Sbjct: 452 IEKLESELERFRREVRDKVRKDREIRA 478
Score = 28.5 bits (64), Expect = 3.5
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEE-----EEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ + + + EE K+ +EE E KK E+ +E+ E EN E + E ++
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKR 450
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+ E+ E E E + ++
Sbjct: 451 EIEKLESELERFRREVRDKV 470
Score = 28.1 bits (63), Expect = 4.9
Identities = 18/84 (21%), Positives = 36/84 (42%)
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
EI + + I EE E E E E + E E +++ ++ E E E + E + +
Sbjct: 413 ERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRK 472
Query: 217 GENEEEEEEEVVKQKKNEEEEEEE 240
+ + + +K EE+++
Sbjct: 473 DREIRARDRRIERLEKELEEKKKR 496
Score = 27.4 bits (61), Expect = 8.7
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLE 247
E + + K +E E+E +EE+ E E ++ EE V++ + E E + E L +L+
Sbjct: 391 AEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRE-LEELK 449
Query: 248 EEEEN 252
E E
Sbjct: 450 REIEK 454
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 34.8 bits (80), Expect = 0.042
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG-----------------ENEEEEEEEV 227
N EE + + E+E+E + E DE K+ G EEEE
Sbjct: 539 NSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAA 598
Query: 228 VKQKKNEEEE 237
+K K + E
Sbjct: 599 LKMKMTDTSE 608
Score = 32.1 bits (73), Expect = 0.30
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 16/65 (24%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEV----------------KQKKNKEEEEEEEEKKEE 209
++ ++ ++EDE E E +EE ++ K K EEEE + K
Sbjct: 545 IDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMKMT 604
Query: 210 DEIEK 214
D EK
Sbjct: 605 DTSEK 609
Score = 31.8 bits (72), Expect = 0.37
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV-----------KQKKNEE--EEEEE 240
+ + EE + + ++ ++ E E +EE ++ Q K + EEEE
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 241 EVLIKLEEEEE 251
+ +K+ + E
Sbjct: 598 ALKMKMTDTSE 608
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 34.4 bits (79), Expect = 0.044
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E+ E E + +++ K K ++ ++EE ++D EE E +E+EEEE ++++
Sbjct: 219 EEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEE 278
Query: 233 NEEEEEE 239
EE+E+E
Sbjct: 279 EEEDEDE 285
Score = 34.0 bits (78), Expect = 0.051
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 5/77 (6%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+N + EE ++E ++ + KNK+ ++EE++ ++ D +E++E + +EEEEE
Sbjct: 214 KNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEE 273
Query: 226 EVVKQKKNEEEEEEEEV 242
+ EEEEE+E+
Sbjct: 274 T-----EEEEEEEDEDE 285
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 34.3 bits (79), Expect = 0.045
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 11/97 (11%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEE-----------VKQKKNKEEEEEEEEKKEEDEIEK 214
E + E++ +DE E E E E K ++NKE+ +E E++ ++E +
Sbjct: 243 EESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQL 302
Query: 215 EEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
++ + +E+ K+ +E+ + + E E+
Sbjct: 303 KKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEK 339
Score = 33.1 bits (76), Expect = 0.13
Identities = 16/81 (19%), Positives = 33/81 (40%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE ++ E E ++ E + + + ++K + + KE+ E E E + KQ
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQ 301
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K + + I E ++
Sbjct: 302 LKKKLAQLARLKEIAKEVAQK 322
Score = 32.8 bits (75), Expect = 0.15
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 13/127 (10%)
Query: 138 LKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNK 197
L G P + H+ SY+P F+ + + EE +KE ++ + E E K+ +
Sbjct: 169 LAANGKPVPAVEVPHAGASYNPS-FEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKM 227
Query: 198 EEE------------EEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
E EE ++ EE+ ++ E E E E + K + + + + + K
Sbjct: 228 APEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEK 287
Query: 246 LEEEEEN 252
+E E
Sbjct: 288 RRKELER 294
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 34.7 bits (80), Expect = 0.045
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E I + K EE E + E E+ E + +EE +E ++ +E E ++EE +E
Sbjct: 174 ELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQE 233
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E + EE+E EE+ +L E E
Sbjct: 234 IEALEERLAELEEEKERLEELKARLLEIESL 264
Score = 33.6 bits (77), Expect = 0.092
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E EK+ + E E E EEE+ ++K + E EE E+ E++ E EE E E EE +K
Sbjct: 469 EEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALK 528
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++ E+ E+ E +L +LEE +E
Sbjct: 529 EELEEKLEKLENLLEELEELKEK 551
Score = 33.6 bits (77), Expect = 0.11
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++ E EIEE E E E + EE E+ + EE + EE + E E E + +
Sbjct: 291 ERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+KNE + EE L +LEE E
Sbjct: 351 EKNELAKLLEERLKELEERLE 371
Score = 32.0 bits (73), Expect = 0.28
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EE+ + +EE E EE +++ + + E+ E K+ E+ I++ + E E
Sbjct: 345 LEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAA 404
Query: 226 EV-VKQKKNEEEEEEEEVLIKLEEEEEN 252
++++ E E+E EE+ +LEE EE
Sbjct: 405 LEEIQEELEELEKELEELERELEELEEE 432
Score = 31.7 bits (72), Expect = 0.39
Identities = 27/83 (32%), Positives = 47/83 (56%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+ G+E +E ++ E E E E +++ E+EE E ++E +E+EKE E EEE E +
Sbjct: 462 VCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELL 521
Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
++ +EE EE+ ++ EE
Sbjct: 522 ELEEALKEELEEKLEKLENLLEE 544
Score = 31.7 bits (72), Expect = 0.42
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E + E I E++ E E E E E EE +++ +E+ E+ E EE E KE+ +
Sbjct: 495 EEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL 554
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
++ +EE + + +E +E E L L +E
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKE 586
Score = 31.3 bits (71), Expect = 0.49
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E E+ EE+ E+E E E ++ KE E EEE E E+E+ E EE+ E++
Sbjct: 481 LELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLEN 540
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
+ EE +E+ L +L+EE
Sbjct: 541 LLEELEELKEKLQLQQLKEELRQ 563
Score = 31.3 bits (71), Expect = 0.54
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E ++ + E E + +++ + K EE E E ++E IE EE E+ EE E +++
Sbjct: 636 ESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEE 695
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ + EE EE+L KL E E+
Sbjct: 696 ELEQLREELEELLKKLGEIEQ 716
Score = 31.3 bits (71), Expect = 0.59
Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE-DEIEKEEGENEEEEEE 225
E E+ ++E+EE+ + E +++ + +E+ + ++ KEE ++E E +E EE
Sbjct: 518 IELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEE 577
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + + EE EE E L +L+++ +
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLK 603
Score = 30.9 bits (70), Expect = 0.79
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+EE++ E EIE E E ++K+ EE + + E E+E + EE E E + +
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ E+ E EE+ ++EE EE
Sbjct: 285 ELEEKIERLEELEREIEELEEE 306
Score = 30.5 bits (69), Expect = 0.91
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + E + E+ E +E EE + + + +E EE E KE + KE E + EE
Sbjct: 555 QQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEE 614
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + +E E E EE +LE E E
Sbjct: 615 LLQSLELSEAENELEEAEEELESELE 640
Score = 29.7 bits (67), Expect = 1.7
Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE-DEIEKEEGENEEEEEEEVVKQ 230
EE+ +E E EE E+E E ++ K+ EE +E KEE E+ E +EE EE +
Sbjct: 360 EERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKEL 419
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++ E E EE E IK EE+ N
Sbjct: 420 EELERELEELEEEIKKLEEQIN 441
Score = 29.7 bits (67), Expect = 1.7
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE ++E + +EE E EEE ++ + + E E E + ++ E E E E +
Sbjct: 228 EELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELE 287
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+K E EE E + +LEEE E
Sbjct: 288 EKIERLEELEREIEELEEELEG 309
Score = 29.7 bits (67), Expect = 1.7
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEE-EEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EE ++E + + E EE +++ K+ EE E+ EEK E+ E E EE E+ E ++++
Sbjct: 301 EELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLE 360
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
++ E EE EE+ +LE+ E
Sbjct: 361 ERLKELEERLEELEKELEKALER 383
Score = 29.7 bits (67), Expect = 1.8
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E + E EE+ E EE++++ + EEE E + +E+E+ + + EE ++
Sbjct: 277 RELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEE 336
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
K E+ E E E L + + E
Sbjct: 337 KLEKLESELEELAEEKNELA 356
Score = 29.3 bits (66), Expect = 1.9
Identities = 21/88 (23%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E + +EK + +++EE + E+ +++ K+ EE +KEE E +E + +++
Sbjct: 543 EELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKL 602
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+E+ ++ EE + L + E E E
Sbjct: 603 KELEERLSQLEELLQSLELSEAENELEE 630
Score = 29.3 bits (66), Expect = 2.1
Identities = 19/87 (21%), Positives = 37/87 (42%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + E E+K E E EE + K + + +EE + + E+++ E
Sbjct: 525 EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTR 584
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ ++ E +E ++ L +LEE
Sbjct: 585 KEELEELRERLKELKKKLKELEERLSQ 611
Score = 29.3 bits (66), Expect = 2.3
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E + E E + EE E+++ + EE+ E ++ E EIE+ E E E +
Sbjct: 259 LEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELE 318
Query: 231 KKNEEEEEEEEVLIKLEEE 249
+ E+ + EE L KLEE+
Sbjct: 319 ELLEKLKSLEERLEKLEEK 337
Score = 29.0 bits (65), Expect = 2.7
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ A E+ EE E E E EEE + + +EE EEK E+ E EE EE +E
Sbjct: 494 KEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE---LEELKE 550
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++ Q+ EE + E+ L +L+E E
Sbjct: 551 KLQLQQLKEELRQLEDRLQELKELLEE 577
Score = 29.0 bits (65), Expect = 3.1
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++ + + E E+ E E +K ++ + E E ++ E++IE+ E E EE E +
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
EE EE+L KL+ EE
Sbjct: 309 GLRALLEELEELLEKLKSLEER 330
Score = 28.6 bits (64), Expect = 3.8
Identities = 29/81 (35%), Positives = 41/81 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE K EIE E E + +++ + E EE +++ + +E+ E E EE EEE +
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
EE EE E L LEE E
Sbjct: 312 ALLEELEELLEKLKSLEERLE 332
Score = 28.6 bits (64), Expect = 3.9
Identities = 27/86 (31%), Positives = 41/86 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E++ E K E+E+ E E EE ++ + EE E E E+ EE+ E EE
Sbjct: 262 ESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELL 321
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E +K + E+ EE++ E EE
Sbjct: 322 EKLKSLEERLEKLEEKLEKLESELEE 347
Score = 28.6 bits (64), Expect = 3.9
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE-IEKEEGENEEEEEEEVVK 229
EEE KE ++EE + E+EEE +++ + EE E +EE E +E+ + E E E+
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
K EEE E E L++ EE+
Sbjct: 269 LKIREEELRELERLLEELEEKIE 291
Score = 28.2 bits (63), Expect = 5.1
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
EE +E E E + EE++++ + E+E EE ++E +E+E+E + EE+ +
Sbjct: 384 LKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQL 443
Query: 227 VVKQKKNEEEEEEEE 241
K+ E E
Sbjct: 444 ESKELMIAELAGAGE 458
Score = 27.8 bits (62), Expect = 7.0
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ + E E E E E EEE++ + K + E E+ + +E+ E + EE E E
Sbjct: 611 QLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEI 670
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+ ++ E EE+ EE L +LE+ EE
Sbjct: 671 RRELQRIENEEQLEEKLEELEQLEE 695
Score = 27.4 bits (61), Expect = 9.4
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ E E+ E EE E+ E K +K + E EE E+K E EE E EE
Sbjct: 310 LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEER 369
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E ++++ + E +++ ++E +E
Sbjct: 370 LEELEKELEKALERLKQLEEAIQELKE 396
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 34.6 bits (80), Expect = 0.045
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E+ ++ EE EE K+ + EE +E+++++E + ++ E ++ EE K +
Sbjct: 42 ERGSFRDLTEESLREEIA-KEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARD 100
Query: 233 N 233
Sbjct: 101 E 101
Score = 33.1 bits (76), Expect = 0.13
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 185 NEEE--EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
EE EE+ ++ K + EE +++E+DE + + E ++ E + ++E
Sbjct: 50 TEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDE 101
Score = 32.7 bits (75), Expect = 0.16
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
E IA E K + E +EE ++EE+ + ++ EE K DE+
Sbjct: 56 EEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDEV 102
Score = 30.4 bits (69), Expect = 0.86
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE EE KE +I+ E +EEE++EE E ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 28.5 bits (64), Expect = 3.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 205 EKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E+ +EI KE + + EE + + + ++ ++ EE +EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 34.3 bits (79), Expect = 0.046
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
I F+ + + + I +E+ + EEE + + +KE+ NE
Sbjct: 8 ILSFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFS--EEENKVATTSTKKDKKEDKNNE 65
Query: 221 EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+++ E K+KK E++E + E KL +
Sbjct: 66 SKKKSEKKKKKKKEKKEPKSEGETKLGFKTPK 97
Score = 30.1 bits (68), Expect = 1.2
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ F E + + +E++N E ++ K +K K++++E++E K E E +
Sbjct: 36 KEILSTFSEEENKVATTSTKKDKKEDKNNESKK-KSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 218 ENEEEEEEEVV--KQKKNEEEEEEEEVLIKLEE 248
++ ++ + K K NE+ + + +L E
Sbjct: 95 TPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
Score = 29.7 bits (67), Expect = 1.5
Identities = 17/92 (18%), Positives = 42/92 (45%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
I + N+ ++ EEE K+ K +++ E ++K E+ + +K+E +
Sbjct: 23 PISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKE 82
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ E E + K ++ ++ ++ K + E+
Sbjct: 83 PKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 34.5 bits (80), Expect = 0.047
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 173 EKKEEDEIEEE---------ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE-EGENEEE 222
K+ DE+EEE E EEE + + +EE EE +KE + + +E + ++
Sbjct: 186 LKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKY 245
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKL 246
EE + + E E E E L K
Sbjct: 246 LEELLALYEYLEIELERAEALSKF 269
Score = 33.0 bits (76), Expect = 0.17
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI--EKEEGENEEE 222
+E + EEE + I E + E EE K++++ EE +E KK +E+ E E E E
Sbjct: 202 FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELE 261
Query: 223 EEEEVVKQKK 232
E + K K
Sbjct: 262 RAEALSKFLK 271
Score = 31.4 bits (72), Expect = 0.50
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Query: 172 EEKKEEDEIEEEENEEEE--EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E+ KEE E ++ + +K + + +E+ + + EE++K
Sbjct: 34 EDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNP----LREEKKKVSVKSLEELIK 89
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+ E E+ E+E+ EE E
Sbjct: 90 DVEEELEKIEKEIKELEEEISE 111
Score = 28.7 bits (65), Expect = 3.3
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEE----EEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E K E+ E + E E + K +E + E+E++K E E EEE
Sbjct: 154 EDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTP 213
Query: 229 KQKKNEEEEEEEEVLIKLEE 248
+ E +EE EE+ + E
Sbjct: 214 SELIREIKEELEEIEKERES 233
Score = 28.0 bits (63), Expect = 6.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 170 GEEEKKEEDEIEEEENEE----EEEVKQKKNKEEEEEEEEKKEEDEIE 213
+ K +E+ ++ EE E+E+K+ + + E E E K+ E EIE
Sbjct: 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIE 124
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 34.7 bits (80), Expect = 0.048
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 22/133 (16%)
Query: 104 ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK 163
EL K ++V+ + F S +D +I + +K EG Y+ + ++ P + K
Sbjct: 787 ELRGKTRVLVTNQLHFL----SQVDRIILVHEGMIKEEGT---YEELSNNGPLFQ----K 835
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN---- 219
EN AG+ E E EE EEE++ K KK+ +K +
Sbjct: 836 LMEN-AGKME-----EYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLI 889
Query: 220 -EEEEEEEVVKQK 231
+EE E VV K
Sbjct: 890 KQEERETGVVSWK 902
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 34.6 bits (79), Expect = 0.049
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W ++E+ I E + E + EEEEE + EEDE E E+E
Sbjct: 106 WSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDE------EYYEKEP 159
Query: 225 EEVVKQKKNEEEEEE 239
+VV +K EEEEEE
Sbjct: 160 GKVVDEKSEEEEEEE 174
Score = 34.2 bits (78), Expect = 0.059
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
Query: 176 EEDEIEEEENEEEEEVKQKK----NKEEEEEEEEKKEEDEIEKE 215
EE+E+E EE+EE E + K EEEEEEE K +D I+ E
Sbjct: 142 EEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLE 185
Score = 30.4 bits (68), Expect = 1.0
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E EEE E+ EE+EE +KE ++ E+ E EEEEE + +K
Sbjct: 140 LEEEEEVEM-------EEDEEYYEKEPGKVVDEKSEEEEEEELKTMK 179
Score = 29.2 bits (65), Expect = 2.4
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 172 EEKKEEDEIEEEENEEEEE----VKQKKNKEEEEEEEEKKE 208
E++EE E+EE+E E+E V +K +EEEEE + K+
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 28.5 bits (63), Expect = 4.4
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ EE+E E E +EE K+ +E+ EEE++EE + K+ + E + ++ VK
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDN 196
Query: 232 K 232
Sbjct: 197 G 197
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 34.7 bits (80), Expect = 0.049
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK-NEEEEEEEEV 242
EE+ N + +EE+K D + E + E + K +K + +E+ +++
Sbjct: 219 NKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKL 278
Query: 243 LIKL 246
I +
Sbjct: 279 GISI 282
Score = 29.3 bits (66), Expect = 2.2
Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 191 VKQKKNKEEEEEEEEKKE-----EDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
+K K+ +EE+ ++E+ N+ E E + E ++E+ E +
Sbjct: 211 IKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270
Query: 246 LEEEEEN 252
L+E+ +
Sbjct: 271 LKEKAKK 277
Score = 28.1 bits (63), Expect = 5.0
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE-----KKEEDEIEKEEGENEEEEEEEVV 228
K +E I +EE V NK +EE++ + E+ + E + E+ E+ + +
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271
Query: 229 KQK 231
K+K
Sbjct: 272 KEK 274
Score = 28.1 bits (63), Expect = 5.9
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
NI EE+ + +EE K E E+ E + EK E + +E+ +
Sbjct: 217 NINKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAK 276
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 34.1 bits (79), Expect = 0.051
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
++D ++EE E Q EEEEEEEE++EE+E +EE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEA 321
Score = 33.7 bits (78), Expect = 0.072
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
+A ++ EE + + ++++ +EEEEEEEE EE+
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAA 323
Score = 32.5 bits (75), Expect = 0.17
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
+++ +EE+K+ + + + E++EE+E E+EE E EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.8 bits (73), Expect = 0.27
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
+A K+ + E +E + +EEEEEEEE++EE E
Sbjct: 274 LAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 30.6 bits (70), Expect = 0.79
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+++ +EE + + EEE++EE+E E+EE +EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEE-EEEEEPSEEE 320
Score = 28.7 bits (65), Expect = 2.6
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+EE +E E EEEEEEE EEEE EE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEE-------EEEEPSEE 319
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 34.2 bits (78), Expect = 0.051
Identities = 23/107 (21%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 137 FLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKN 196
+ EG +Y Y+ P + GE + E +EI +E + V + ++
Sbjct: 326 PIPLEGDVYGYQPPGWHEPLFEVGPETAE----GELLQFEAEEIYNDEEQYTRPVYENED 381
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
EE ++ E E +E+ +V K+ K + E+ VL
Sbjct: 382 FEERVDDVSNGGLAEFAPAAVEVAPKEDAKVTKRGKAKREKLLYSVL 428
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 34.0 bits (78), Expect = 0.054
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 163 KFWENIAGEEEKKEEDEIEEEE-NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
F E EE + E E E+ + + + E + K++ +K + +
Sbjct: 41 VFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPK 100
Query: 222 EEEEEVVKQKKNEEEEEEEE 241
+ + K K + + ++
Sbjct: 101 PKPKPKPKPKVKPQPKPKKP 120
Score = 29.0 bits (65), Expect = 2.0
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
K E EE + E E +Q K E E E K + + + E++ + K K
Sbjct: 47 KVLEAPTEEPQPEPEPPEEQPK----PPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPK 102
Query: 234 EEEEEEEEV 242
+ + + +V
Sbjct: 103 PKPKPKPKV 111
Score = 27.8 bits (62), Expect = 4.7
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E E E+ E + + +E+ K E+ + + + + + VK
Sbjct: 59 EPEPPE-----EQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKP 113
Query: 231 KKNEEEEEEEEV 242
+ ++ +
Sbjct: 114 QPKPKKPPSKTA 125
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 34.2 bits (79), Expect = 0.054
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+E + E EE+E +++ K EE +E ++E +E+EK +E E K
Sbjct: 491 IIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEK--LLDEVELLTGANSGGKTSL 548
Query: 236 EEEEEEVLIKLEEE 249
E + ++++
Sbjct: 549 LELKAQIVVLAHMG 562
Score = 28.1 bits (63), Expect = 6.1
Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNK-EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EEE +E +++ +E K E + + + E + E +EV
Sbjct: 521 EEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVEAVDEVKF 580
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
KK + + L++++
Sbjct: 581 LKKKKGILDAGAFESTLKDKKN 602
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 33.4 bits (77), Expect = 0.056
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE----EEVL 243
EE ++ +E EE E E+ EDE+E+E E E E E +Q K E E + EE
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERY 60
Query: 244 IKLEEEEEN 252
++L+ + EN
Sbjct: 61 LRLQADFEN 69
Score = 31.9 bits (73), Expect = 0.21
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E+ ++ E+E+EE E EE E + ++ EEE E E +E++ + E E + +E EE
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 30.4 bits (69), Expect = 0.61
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 170 GEEEKKEEDEIEEEENEEE--EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E+ ++E +E E EE E+ EE ++ E E +EE+ + E+E + E EE
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 34.2 bits (79), Expect = 0.059
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
EEE EEEEEV ++ +EEEEEEEE+ E+E+ E EEE+ + E
Sbjct: 300 PSPPEPEEEEEEEEEVPEE--EEEEEEEEERTFEEEVRATVAEAIRLLEEELTVSARRHE 357
Query: 236 ----EEEEEEVLIKLEEEEE 251
+ E+L +LE+
Sbjct: 358 FFNFAVDFYELLQRLEDLGR 377
Score = 27.7 bits (62), Expect = 6.6
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 154 APSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEE 190
P SP E EEE++E E EEEE EEEE
Sbjct: 297 RPPPSPP-----EPEEEEEEEEEVPEEEEEEEEEEER 328
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 34.1 bits (78), Expect = 0.061
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEE--EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE-E 223
+I E E + E+E + ++ + +N E E E DE++KEE +E E
Sbjct: 28 DILLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELE 87
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E E + E E +E +LE EE
Sbjct: 88 ELEKEDDDLDGELVELQEEKEQLENEEL 115
Score = 31.0 bits (70), Expect = 0.59
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE---EEKKEEDEIEKEEGENEEEEEEEV 227
E + E E ++E +E K+++ +E EE E+ + E+ + + E E+ E EE+
Sbjct: 56 ESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEEL 115
Query: 228 VKQK 231
+
Sbjct: 116 QYLR 119
Score = 30.2 bits (68), Expect = 1.1
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E + E E + E +E+K+++ + +E EE +KE+D+++ E E +EE+E++ ++
Sbjct: 56 ESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVE-LQEEKEQLENEE 114
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
E L+ E+
Sbjct: 115 LQYLREYNLFDRNNLQLEDN 134
Score = 27.1 bits (60), Expect = 9.9
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
+ + EEE+ DE+EE E E++ E +EE+E+ E +E++ N
Sbjct: 73 DELKKEEERL-LDELEELEKEDD---DLDGELVELQEEKEQLENEELQYLREYNL 123
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 34.4 bits (78), Expect = 0.064
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E+ E+ +EE E EE ++ +E EE E+ E+ +E+ EN EE +E
Sbjct: 965 ENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDE 1024
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E V++ + EE +EE + ++EE E
Sbjct: 1025 ENVEEVEENVEEYDEENVEEIEENAE 1050
Score = 34.0 bits (77), Expect = 0.083
Identities = 29/80 (36%), Positives = 42/80 (52%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE +E E +EEN EE E ++N EE EE ++ +EIE+ EN EE EE ++
Sbjct: 1054 EENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEE 1113
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
E EE ++ + EE
Sbjct: 1114 NAEENAEEYDDENPEEHNEE 1133
Score = 33.6 bits (76), Expect = 0.094
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E+ E+ +EE E EE ++ +E EE E+ +E+ +E+ E EE +EE
Sbjct: 981 ENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEE 1040
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
V + ++N EE EE + +EE +E
Sbjct: 1041 NVEEIEENAEENVEENIEENIEEYDE 1066
Score = 33.2 bits (75), Expect = 0.12
Identities = 30/71 (42%), Positives = 40/71 (56%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE +E DE EE EE E ++N EE EE +++ +EIE+ EN EE EE V++
Sbjct: 1031 EENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEE 1090
Query: 231 KKNEEEEEEEE 241
E EE EE
Sbjct: 1091 NVEEIEENVEE 1101
Score = 32.8 bits (74), Expect = 0.17
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E+ E+ IEE E EE ++ +E +EE E+ EE+ E +E EE EE
Sbjct: 989 ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++N EE EE +EE EEN
Sbjct: 1049 AEENVEENIEENIEEYDEENVEEIEEN 1075
Score = 32.1 bits (72), Expect = 0.28
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E+ E+ +EE E EE ++ +E EE E+ E+ +E+ + EN EE EE
Sbjct: 973 ENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEE 1032
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
V + + EE EE +EE E
Sbjct: 1033 NVEEYDEENVEEIEENAEENVEENIE 1058
Score = 32.1 bits (72), Expect = 0.32
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE +E E EE EE +E ++ +E EE E+ E+ IE+ + EN EE EE +
Sbjct: 1020 EEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENI--- 1076
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
++N EE EE V +EE EEN
Sbjct: 1077 EENIEENVEENVEENVEEIEEN 1098
Score = 31.7 bits (71), Expect = 0.42
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E+ E+ E+ +EE E EE ++ +E EE E+ E+ IE+ EN EE E
Sbjct: 957 EDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIE 1016
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEE 249
E V++ E EE EE + + +EE
Sbjct: 1017 ENVEEYDEENVEEVEENVEEYDEE 1040
Score = 30.1 bits (67), Expect = 1.2
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 150 ILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
I H + E+ EN+ ++ E IEE+ E EE ++ +E EE E+ E
Sbjct: 917 IAHEINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVE 976
Query: 210 DEIEKEEGENEEEEEEEVVKQ--KKNEEEEEEEEVLIKLEEEEE 251
+ +E+ EN EE EE V++ ++N EE EE V +EE E
Sbjct: 977 ENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVE 1020
Score = 30.1 bits (67), Expect = 1.3
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E+ E+ E+ +EE E EE ++ +E EE E+ E+ +E+ EN EE E
Sbjct: 949 EDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVE 1008
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEE 249
E V++ E EE +E ++ EE
Sbjct: 1009 ENVEENIEENVEEYDEENVEEVEE 1032
Score = 30.1 bits (67), Expect = 1.4
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 166 ENIAGEEEKKEEDEIEE---EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
EN+ E+ E+ +EE E EE E ++N EE EE E+ +E+ +E+ E EE
Sbjct: 993 ENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEEN 1052
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE + + + +EE EE+ +EE E
Sbjct: 1053 VEENIEENIEEYDEENVEEIEENIEENIE 1081
Score = 30.1 bits (67), Expect = 1.4
Identities = 28/87 (32%), Positives = 42/87 (48%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E+ E+ +EE E EE ++ +E EE +E+ E+ E E +EE EE
Sbjct: 985 ENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEE 1044
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++N EE EE + EE E
Sbjct: 1045 IEENAEENVEENIEENIEEYDEENVEE 1071
Score = 29.4 bits (65), Expect = 2.2
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 172 EEKKEEDEIEEEEN-EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE +E E EEN EE E ++N EE EE E+ E+ +E+ EN EE EE V +
Sbjct: 1043 EEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEEN 1102
Query: 231 -KKNEEEEEEEEVLIKLEEEEE 251
++N EE EE EE ++
Sbjct: 1103 VEENAEENAEENAEENAEEYDD 1124
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 33.9 bits (78), Expect = 0.064
Identities = 18/64 (28%), Positives = 24/64 (37%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E G + E E +E E EV+ E E E+ E E+ E EEE +
Sbjct: 189 EGWLGPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNK 248
Query: 226 EVVK 229
V
Sbjct: 249 PVKP 252
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 33.0 bits (76), Expect = 0.067
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E+E++EE+E+E EE +EEE++ + KE + + EK+ E+E +++E
Sbjct: 100 EKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 32.3 bits (74), Expect = 0.099
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+++E+EEE++EE E+E+ + E + +E E K E+ E E
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 31.9 bits (73), Expect = 0.17
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
+ K+ + + ++++ EEEE E E E ++ + +E E+E + ++ E E +
Sbjct: 83 LLKWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERK 142
Query: 221 EEEE 224
++E
Sbjct: 143 QKEI 146
Score = 30.7 bits (70), Expect = 0.37
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
EEE+ E +E++EEE +E K+ + E+ E ++++ EI KE+
Sbjct: 104 EEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 29.6 bits (67), Expect = 0.87
Identities = 16/57 (28%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
++ ++++ +EEE E EE EE++I++ E+E ++ ++K+ E E +++E+L
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDEL----LEKELAKLKREKRRENERKQKEIL 147
Score = 29.2 bits (66), Expect = 1.2
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
K +K +++E+E++EE+E+E EE + EE+ +E + K+ + E+ E
Sbjct: 89 KVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRE 138
Score = 27.3 bits (61), Expect = 5.2
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
K +++EK+EE+E E E E +EEE+ + + +K+ + + E+ + +++E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 33.9 bits (77), Expect = 0.068
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 162 FKFWENIAGEEEKK--EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
W A E EK+ E++ EEE E + E++ + E+E+ ++K E + ++
Sbjct: 183 EHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSME 242
Query: 220 EEEEEEEVVKQKKNEEEEEEE 240
E EEE + +++E+E+E+
Sbjct: 243 TSESEEEESSESESDEDEDED 263
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 33.7 bits (77), Expect = 0.068
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
E+ E E ++ E++E E + ++ E+EE E EE+EEE + EEE E
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEE-----EGEEESE 100
Query: 239 EEEVL 243
E E L
Sbjct: 101 EFEPL 105
Score = 33.3 bits (76), Expect = 0.086
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+D IE E E ++ N + E++E + E I ++ E E EE EE +++ EE
Sbjct: 42 DDAIELAEPETSDD--PYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
Query: 237 EEEEEV 242
EE E +
Sbjct: 100 EEFEPL 105
Score = 30.6 bits (69), Expect = 0.69
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E ++ + E++E + + E+ EEEE +E +E E+EEGE E EE E +
Sbjct: 49 EPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL--- 105
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ EE E +LEE EE
Sbjct: 106 --GDTPEELTEASEQLEEHEE 124
Score = 29.8 bits (67), Expect = 1.2
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
F E+ G E + ++ EEEE EE EE ++++ +EE EE E + E E E EE
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEH 122
Query: 224 EE---EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EE +V+Q E I+ E EEE
Sbjct: 123 EEGFQAMVEQAVERGLSAETITRIQAEYEEEG 154
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 33.9 bits (78), Expect = 0.073
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ E K + E + ++ E + +K K+ EE + KK E + +E +
Sbjct: 56 AVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSL--IERKTQEVK 113
Query: 227 VVKQKKNEEEEEEEEVLIKLEE 248
++ E +E+ + +LEE
Sbjct: 114 DSGEEIAEMMRDEKVPIRELEE 135
Score = 27.3 bits (61), Expect = 9.0
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
KK E + +EVK + E +EK E+E+ E ++E+ +
Sbjct: 94 AKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEI---QS 150
Query: 233 NEEEEEEEEVLIK 245
E+L
Sbjct: 151 PTRLNLINELLRA 163
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 33.3 bits (76), Expect = 0.076
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E EE + +E K++ + E+E EE + E+D +EK E E+++E E +K++ E
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 237 EEEE 240
EE E
Sbjct: 201 EELE 204
Score = 27.9 bits (62), Expect = 4.5
Identities = 17/61 (27%), Positives = 38/61 (62%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+++ + + + +E+K+ +E+EKE E E+E++ ++ E+++E EE+ +LEE E
Sbjct: 142 QERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLE 201
Query: 252 N 252
Sbjct: 202 E 202
Score = 27.9 bits (62), Expect = 4.5
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
+E +++ K K +E++E ++ E E+E+ E E + E+ K+KK E EE +EE+ L
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 247 EEEE 250
EE E
Sbjct: 201 EELE 204
Score = 27.9 bits (62), Expect = 4.6
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ K++++ +EE E E EE +K E+ EE+EKK+E E KEE E EE E
Sbjct: 150 FKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEELE 204
Score = 27.1 bits (60), Expect = 8.4
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ +K+ + E EE+K K+ +++E EE +KE +E+E E+ E+ EE+ K+
Sbjct: 128 KSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKK 187
Query: 231 KKNEEEEEEEEVLIKLE 247
+ E +EE EE+L +LE
Sbjct: 188 ELEELKEELEELLEELE 204
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 33.2 bits (75), Expect = 0.079
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+N A E ++++ DE+ E E ++E + + K E+ EE + + +E ++E ENEE++ +
Sbjct: 7 KNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPK 66
Query: 226 EVVKQKKNEEEEEEEEVLIKLE 247
E + E + +E+ L LE
Sbjct: 67 EEIDYPIQENKSFDEKNLDDLE 88
Score = 28.2 bits (62), Expect = 3.8
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
+ K+ K ++ +E E +K + E+E+ + E+ EE+ Q + E+EEE K +EE
Sbjct: 9 KAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.9 bits (78), Expect = 0.079
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 159 PEIFKFWENIAGEEEKKEE--DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E+ + E + +EE+ + ++++ EN+ EE K +E E EE EK+ ++E+ +
Sbjct: 77 EELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVA 136
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
G E+ + ++K E EEE+ +K EEE
Sbjct: 137 GLTPEQARKLLLKLLDA-ELEEEKAQRVKKIEEE 169
Score = 32.8 bits (75), Expect = 0.15
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG---------EN 219
++++E EE EEE + QK+ + + E+ E+++E+ E E
Sbjct: 64 ERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEE 123
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E++ + + + E+ ++L+KL + E
Sbjct: 124 LEKQLDNELYRVAGLTPEQARKLLLKLLDAELE 156
Score = 28.1 bits (63), Expect = 5.7
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E EEK E +E +E E +Q++ E EE +++EE ++KEE + E+
Sbjct: 41 EAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKL 100
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ ++ + E E+ ++LEE E+
Sbjct: 101 DNLENQLEEREKALSARELELEELEKQ 127
Score = 27.8 bits (62), Expect = 7.2
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 150 ILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
IL A + E + A E +E ++ +E E EE+++ EEE +KEE
Sbjct: 38 ILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQR------EEERLVQKEE 91
Query: 210 D---EIEK-EEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
EK + EN+ EE E+ + ++ E EE E+++ +L
Sbjct: 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYR 134
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 32.7 bits (75), Expect = 0.084
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVK----QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+E E+E++E E K +KK KE+ ++ K +++E EKE+ + E +
Sbjct: 38 SSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKA 97
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+K+ E E+++ ++EE++
Sbjct: 98 LAEAEKERAELEKKKAEAKLMKEEKK 123
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 33.0 bits (76), Expect = 0.084
Identities = 17/71 (23%), Positives = 41/71 (57%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ N+ + +++ K + EE ++ + + +IEK + EE EE + ++ + E+E ++
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 242 VLIKLEEEEEN 252
+ +LE+ E+N
Sbjct: 122 LKAELEKYEKN 132
Score = 28.4 bits (64), Expect = 2.9
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE----- 225
E+ KKE +E+++ E + ++++ K EE EE + E E+++ E E ++ + E
Sbjct: 72 EKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLE-ELKQLEKELKKLKAELEKYE 130
Query: 226 ----EVVKQKKNEEEEEEEEV 242
E +++ K E + +E
Sbjct: 131 KNDPERIEKLKEETKVAKEAA 151
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 33.0 bits (76), Expect = 0.085
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 167 NIAGEEEKKE-EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ E+ K E E EI++ E E+EE K+ E + E EK+EE+E + E+ +
Sbjct: 115 ALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQ----IEEKRHAD 170
Query: 226 EVVKQKKN 233
E+ KK
Sbjct: 171 EIAFLKKQ 178
Score = 29.1 bits (66), Expect = 1.8
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 179 EIEEEENEEEEEVKQ--KKNKEEEEEEEE-KKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
+ E+ ++E E+E+K+ ++ +E E+ E + + + IEK EEEE + K+ +E
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEK----REEEERQIEEKRHADE 171
Score = 27.2 bits (61), Expect = 6.7
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 211 EIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++ E+G++E E+E + ++++K E E+ E+ KLE E+
Sbjct: 115 ALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKR 156
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.2 bits (76), Expect = 0.089
Identities = 10/50 (20%), Positives = 29/50 (58%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+ +E+E E+ +++EE + + + E EE + +++ ++ +K+K+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 27.8 bits (62), Expect = 5.4
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
K EDE E + E E +KK + E ++++E +E ++K+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 27.4 bits (61), Expect = 6.1
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLE 247
K + KE E ++ + E+ E + ++E EE QKK ++ +E+++ L+
Sbjct: 72 QKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQ 128
>gnl|CDD|224112 COG1191, FliA, DNA-directed RNA polymerase specialized sigma
subunit [Transcription].
Length = 247
Score = 33.1 bits (76), Expect = 0.089
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 177 EDEIEEEENEEEEEVKQKKNK----------EEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
++EI EE ++EE + E+ ++++ +D+IE + E+EE E
Sbjct: 129 DEEIAEELGIDKEEYIEALLAINGSQLLSLDEDVLKDDDDDVDDQIENPDDGVEKEELLE 188
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++K+ E E+ VL+ +EE
Sbjct: 189 ILKEAIEPLPEREKLVLVLRYKEELT 214
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 33.2 bits (76), Expect = 0.089
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 172 EEKKEEDEI--EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+ ++EE I + + + E+V+ + + +EE E+ E + E + EEE E+
Sbjct: 104 KFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEV 163
Query: 230 QKKNEEEEEEEEVLIKL 246
+ E + E E +I L
Sbjct: 164 DEPEEPKPEPELDVIVL 180
Score = 31.3 bits (71), Expect = 0.39
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E+EEEE++ E+E + + + + + +K E ++E+ E EE E V + E
Sbjct: 95 GGELEEEEDKFEQE-EAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEV 153
Query: 237 EEEEEVLIKLEEEEE 251
+ EEE I+++E EE
Sbjct: 154 QPEEETEIEVDEPEE 168
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 33.7 bits (78), Expect = 0.091
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 13/88 (14%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ EEE EE+ EE EE+E E E + +DE +EE EE + E+
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDE---------EAALEVELSDDEELEEEKAEEELKYED 514
Query: 227 VVKQKKNEEEEEEEEV--LIK--LEEEE 250
++K+ + +E+ EEV +++ L E+E
Sbjct: 515 LLKRLRELAKEDPEEVAQVLRTWLSEDE 542
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 33.5 bits (77), Expect = 0.096
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEE-----EEVKQKKNKEEEEEEEEKKEEDEIEK 214
E+F I ++ K + + E + +++ + E EEE +K +E+ E
Sbjct: 442 EVFGKGAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQET 501
Query: 215 EEGENEEEEEEEV----VKQKKNEEEEEEE 240
+ E E +E + + ++ E +
Sbjct: 502 QLKEATELQEFMINNEDLIEEAKELFGIKS 531
Score = 33.1 bits (76), Expect = 0.14
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+ G+ K + + + + + KE + E+KK + E E E E ++++E
Sbjct: 443 VFGKGAKIKIQKALKSAENPLQSL-----KEFKPSNEKKKIDTESTAEMLEEEAKKDDEE 497
Query: 228 VKQKKNEEEEEEEEVLIKLEE 248
V++ + +E E +E +I E+
Sbjct: 498 VQETQLKEATELQEFMINNED 518
Score = 29.6 bits (67), Expect = 1.6
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE + ++EE + + + E +E ED IE+ E + +
Sbjct: 489 EEAKKDDEEVQETQLKEATELQEFMINNEDLIEE---AKELFGIKSIELL 535
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 33.5 bits (77), Expect = 0.10
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
+ IA EE+ K+ +E+++ E+E V ++ EEEEEEEE++EE+E E
Sbjct: 373 DKIATEEDVKDIEELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAE 423
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 33.5 bits (77), Expect = 0.10
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 4/77 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
++A +E E E E +E ++++ E E E + + + E
Sbjct: 934 SDVAVAQEVAEHAEPVVEPQDETADIEE----AAETAEVVVAEPEVVAQPAAPVVAEVAA 989
Query: 226 EVVKQKKNEEEEEEEEV 242
EV E E +V
Sbjct: 990 EVETVTAVEPEVAPAQV 1006
Score = 31.5 bits (72), Expect = 0.44
Identities = 17/91 (18%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ + E EN EE +++ +++ E E ++ + EK ++E+++ +Q+
Sbjct: 622 DTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQR 681
Query: 232 KNEEE-----------EEEEEVLIKLEEEEE 251
+ +E EE+ + + E+EE
Sbjct: 682 RRNDEKRQAQQEAKALNVEEQSVQETEQEER 712
Score = 30.0 bits (68), Expect = 1.3
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE----EEEKKEEDEIEKEEGENEEEEEEE 226
E ++ E E ++E+++ ++++ + +E ++E K + E+ E E+EE +
Sbjct: 655 ESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQ 714
Query: 227 VV---------KQKKNEEEEEEEEVLIKLEEEE 250
V QK E+ EE + + EE
Sbjct: 715 QVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEET 747
Score = 28.9 bits (65), Expect = 3.2
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKK-------NKEEEEEEEEKKEEDEIEKEEGENEE 221
+G EE K +++ + E + E +Q + ++ E + + E E E
Sbjct: 581 SGGEETKPQEQ-PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREEN 639
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+Q+ E E ++ + + ++
Sbjct: 640 RRNRRQAQQQTAETRESQQAEVTEKARTQD 669
Score = 27.7 bits (62), Expect = 8.3
Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+++ E E ++ E E+ + ++ + E + ++ +++ + ++ EE+ V
Sbjct: 647 QQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSV-- 704
Query: 231 KKNEEEEEEEEV 242
+E E+EE V
Sbjct: 705 ---QETEQEERV 713
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 33.6 bits (77), Expect = 0.10
Identities = 19/77 (24%), Positives = 42/77 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E + E + ++E+ +E E +++ ++ + + K+ +E+ ENEE EEE +K+
Sbjct: 266 KEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKK 325
Query: 231 KKNEEEEEEEEVLIKLE 247
+ E + E + KL+
Sbjct: 326 RTVELLPDAENNVAKLQ 342
Score = 27.8 bits (62), Expect = 6.6
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
E + A E E D E+ E E E++ + + +E E ++ EI+
Sbjct: 239 RTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALAS 298
Query: 218 ENEEEEEEEVVKQKKNEEEEEE----EEVLIKLEEEEEN 252
+ ++ EE +++NEE EEE + + L + E N
Sbjct: 299 KIKQVNEELTTVRQENEELEEEYKIKKRTVELLPDAENN 337
>gnl|CDD|222259 pfam13608, Potyvirid-P3, Protein P3 of Potyviral polyprotein. This
is the P3 protein section of the Potyviridae
polyproteins. The function is not known except that the
protein is essential to viral survival.
Length = 445
Score = 33.3 bits (77), Expect = 0.11
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEK-------EEGENEEEEEEEVVKQKKNEEEEEEEEVLI 244
+ +K K E EE+E+KEE EI K E EEE E ++ +KN E E E LI
Sbjct: 271 EHRKLKREAAEEKEEKEEKEIRKLYLYSKLEGKLPTEEEFLEYIE-EKNPELLETAEELI 329
Query: 245 KLEE 248
+ EE
Sbjct: 330 EEEE 333
Score = 31.0 bits (71), Expect = 0.67
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
A E+E+KEE EI + + E K +EE E E+K + +E E E EEEEV
Sbjct: 279 AAEEKEEKEEKEIRKLYLYSKLEGKLPT-EEEFLEYIEEKNPELLETAE---ELIEEEEV 334
Query: 228 VKQKKNEEE 236
Q K +E
Sbjct: 335 EHQAKTADE 343
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 33.4 bits (77), Expect = 0.11
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
EKK E E E E+ +++ + K + + E KK + +
Sbjct: 421 AEKKAEKE-EAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 33.0 bits (76), Expect = 0.13
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEE--EEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E ++EE E E +++++K+ K E E+EE +K + + E + + + K
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Query: 230 QK 231
+
Sbjct: 455 KV 456
Score = 31.8 bits (73), Expect = 0.31
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E E EE EN ++KK ++++ + E+K E++E EK + + E + K E +
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Query: 237 EEEEEVL-IKLEEEEE 251
+ + + L KL E+
Sbjct: 455 KVDPDPLGEKLARTED 470
Score = 29.9 bits (68), Expect = 1.5
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ E+E E N E K+ + K+ + E++ +KEE E +++ E K+
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEE-----AEKAAAKKKAEAAAKKA 446
Query: 232 KNEEEEE 238
K + E
Sbjct: 447 KGPDGET 453
Score = 27.2 bits (61), Expect = 9.5
Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 151 LHSAP--SYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
LH P + E N++ E KK + + E + E+E +K +++ E KK
Sbjct: 387 LHDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Query: 209 EDEIEKEEGENEE 221
+ + + + +
Sbjct: 447 KGPDGETKKVDPD 459
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 31.9 bits (73), Expect = 0.12
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNK--EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EEK+EE E E+EE E +EE +++ K ++EE E++ EE E K + ++E+ +
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDE 74
Query: 230 QKKNEEEEE 238
+ K +E +
Sbjct: 75 ELKEQERWD 83
Score = 31.1 bits (71), Expect = 0.27
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE+ EE+E K++K ++EE+E+E K + E+ E + EE E K K ++E+
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEERE---KRLEELEKAKNKPLARYADDED 71
Query: 242 VLIKLEEEE 250
+L+E+E
Sbjct: 72 YDEELKEQE 80
Score = 26.9 bits (60), Expect = 5.8
Identities = 15/56 (26%), Positives = 33/56 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+EEK+ ++E E+E + + ++++ + EE E+ + K +E +EE +E+E
Sbjct: 25 KEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEELKEQE 80
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 32.8 bits (75), Expect = 0.12
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
K+ + E+E++ + EE +K ++ +E + E+EI + E EEE E ++
Sbjct: 116 ARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAE---LER 172
Query: 232 KNEEEEEEEEVLIKLEEEEEN 252
+N + E E + +EE EN
Sbjct: 173 ENIRAKIEAEARGRAKEEREN 193
Score = 29.0 bits (65), Expect = 2.5
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE---E 222
E + E +E + E+ ++ +Q+ + ++E K+ + E+E++ +NEE
Sbjct: 80 AQAKLERARVEAEERRKTLQEQTQQEQQR--AQYQDELARKRYQKELEQQRRQNEELLKM 137
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+EE V++Q+ EEE + ++ E EE
Sbjct: 138 QEESVLRQEAMRRATEEEILEMRRETIEE 166
Score = 27.4 bits (61), Expect = 6.4
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE--KKEEDEIEKEEGENEEEEEEEVVK 229
E+ ++E + + ++E + QK+ +++ + EE K +E+ + ++E EEE +
Sbjct: 100 EQTQQEQQRAQYQDELARKRYQKELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEM 159
Query: 230 QKKNEEEE---EEEEVLIKLEEEEE 251
+++ EEE E E + K+E E
Sbjct: 160 RRETIEEEAELERENIRAKIEAEAR 184
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 31.9 bits (73), Expect = 0.12
Identities = 22/82 (26%), Positives = 48/82 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E + EE + + EE + ++E K K + + +++++KK++ + K+ + EE+E + ++
Sbjct: 61 KETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEE 120
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+EEEE EE+ + E E
Sbjct: 121 SSDEEEEGEEDKQEEPVEIMEK 142
Score = 27.7 bits (62), Expect = 3.9
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE---------EKKEEDEIEKEEGENEE 221
E E+ E + + ++ E+EE +QK+ +++ ++EE +KK++ + +K++ +
Sbjct: 48 EYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGN 107
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++EE+ + E +EEEE +EE
Sbjct: 108 KKEEKEGSKSSEESSDEEEEGEEDKQEEPVE 138
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 33.5 bits (76), Expect = 0.12
Identities = 14/42 (33%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE-EDEIEK 214
KK E+ +E+ + E E++ ++++ +E+E+E+E ++E E E E+
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 32.7 bits (74), Expect = 0.17
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
K EE E+ K+E ++ +EE E E+E+E+E ++++ E E
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 31.6 bits (71), Expect = 0.45
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
EE V++ K + E++ EE++ E E EKE E E E K + E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHE 630
Score = 31.2 bits (70), Expect = 0.62
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 206 KKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
KK E+ +EK + E E++ EE ++K+ E+E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERERE 613
Score = 30.4 bits (68), Expect = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE 204
A E+ K+E ++ EE E E+E ++++ +E E E E
Sbjct: 584 AVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 30.0 bits (67), Expect = 1.3
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
K K+ EE E+ K E E +K E E E+E+E ++++ E E E
Sbjct: 576 KLAKKREEAVEKAKREAE-QKAREEREREKEKEKEREREREREAE 619
Score = 29.3 bits (65), Expect = 2.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
EE E+ + E E+ EE ++K+ ++E E E E++ E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 28.1 bits (62), Expect = 5.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E +K + E E++ EE E ++K KE+E E E ++E + K + E
Sbjct: 583 EAVEKAKREAEQKAREERE---REKEKEKEREREREREAERAAKASSSSHE 630
Score = 28.1 bits (62), Expect = 5.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
EE K K+ E++ EE ++E+++ ++ E E E E E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 27.7 bits (61), Expect = 8.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 204 EEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE E+ + E E+ EE E E+ ++++ E E E E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 33.4 bits (77), Expect = 0.13
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 176 EEDEIEEEENEEEEEVKQKK---NKEEEEEEEEKKEEDEIEKEEG-ENEEEEEEEVVKQK 231
EE++IE+E E E+E+ + EE + KKE EI+K+ G E E EE +
Sbjct: 435 EEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDERRTEIVEEEEDEI 494
Query: 232 KNEEEEEEEEVLIKLEEE 249
++E+ EE+V++ L +
Sbjct: 495 EDEDLIAEEDVVVTLSHK 512
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 32.9 bits (74), Expect = 0.13
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
N +G E ++EE + E+E+ + E+E + N + + E+E++K E E +K E E ++
Sbjct: 145 NKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIA 204
Query: 227 VVKQKKNEEEEEEEE 241
+ E+E+++ E
Sbjct: 205 NKNAIELEQEKQKTE 219
Score = 31.8 bits (71), Expect = 0.32
Identities = 22/86 (25%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE-----IEKEEGENEEEEEE 225
+ KKE + + N+ E++Q++ K E+E+++ +KE E I+ E+ + + E+E+
Sbjct: 131 AQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEK 190
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ +Q+K + + I+LE+E++
Sbjct: 191 QKTEQEKQKTSNIANKNAIELEQEKQ 216
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 33.3 bits (77), Expect = 0.13
Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+ D ++ EE E+ + +K +E+E+ +E E + + E + + + + +
Sbjct: 157 GILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQ 216
Query: 233 NEEEEEEEEV--LIKLEEEEEN 252
++ ++EE+ + ++ EEE
Sbjct: 217 IGKKIDKEEITPMKEINEEERR 238
Score = 33.3 bits (77), Expect = 0.14
Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE---NEEEEEEEV 227
+ +++ E ++E E+E+ K+ ++ E E+KK+ + +EG ++ ++EE+
Sbjct: 167 DSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEI 226
Query: 228 VKQKKNEEEEEE 239
K+ EEE
Sbjct: 227 TPMKEINEEERR 238
Score = 28.3 bits (64), Expect = 5.5
Identities = 12/70 (17%), Positives = 32/70 (45%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ E D ++++ + + +K + + E + E ++ +EEE+E++ K+
Sbjct: 131 NNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEA 190
Query: 232 KNEEEEEEEE 241
++ E E
Sbjct: 191 LEAMKKLEAE 200
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 33.3 bits (76), Expect = 0.13
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE---E 222
+A E + ++ + +E EE+ +EE++ ++ K E +I EE E E
Sbjct: 690 NKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLL 749
Query: 223 EEEEVVKQKKNEEEEEEEEV 242
E+ +K +K +++ EV
Sbjct: 750 AEQNSLKAQKQQQKRIAAEV 769
Score = 32.6 bits (74), Expect = 0.20
Identities = 16/79 (20%), Positives = 33/79 (41%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE + + E E+ +E E EE+ +EE + + + E ++ EE+
Sbjct: 685 EENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEAL 744
Query: 231 KKNEEEEEEEEVLIKLEEE 249
+ N E+ K +++
Sbjct: 745 EANLLAEQNSLKAQKQQQK 763
Score = 32.2 bits (73), Expect = 0.25
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK- 229
E + +E+EE E K + E +E E DE E++ EEE++
Sbjct: 670 LELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDF 729
Query: 230 ----QKKNEEEEEEEEVLIKLEEEE 250
Q + EE E E + E+
Sbjct: 730 KNEWQDISLEELEALEANLLAEQNS 754
Score = 29.1 bits (65), Expect = 2.7
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EE + + E ++ Q +K + +E E+ E+++ EGE+ +E E+
Sbjct: 652 EESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIED------ 705
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+E EE+ ++ +EEE++
Sbjct: 706 LLFDESEEDNIVGMIEEEKD 725
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 33.2 bits (76), Expect = 0.15
Identities = 19/97 (19%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 148 KCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
KC L +PS E W+ ++ +++ +++ +E +EE +++ +E ++ + KK
Sbjct: 151 KCFLEMSPSTPVEKLSGWDTLSDSDQEAVLPLVKKSPSEAKEEKAEERKQESKKGAKRKK 210
Query: 208 EEDEIEKEEGENEEEEEEE--VVKQKKNEEEEEEEEV 242
+ +K + + + QKK+ + E + E
Sbjct: 211 DASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKLEA 247
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 32.6 bits (75), Expect = 0.15
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 42 CDNPNIFA----GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLIL---- 93
C NP A G+TVLD+G+G G L V KV +D P+ L
Sbjct: 66 CGNPTALAELKPGETVLDLGSGGGFDCFLAARRVGPTG---KVIGVD-MTPEMLAKARAN 121
Query: 94 ---------EVIQNKIENVELPEK-VDIIVS 114
E +IE + + + VD+I+S
Sbjct: 122 ARKAGYTNVEFRLGEIEALPVADNSVDVIIS 152
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 32.1 bits (73), Expect = 0.15
Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 20/124 (16%)
Query: 45 PNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENV 103
P + G VLD+G GTG LL+ G D + ++ +
Sbjct: 18 PRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVDPSPAAVLIFSLFDAPDPAVLAG---- 73
Query: 104 ELPEKVDIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCILHSAPSYSPEI 161
K D+I + F +L E + D + + LKP GV+ I +
Sbjct: 74 ----KYDLITA----FEVL-EHLPDPPALLQQLRELLKPGGVLL----ISTPLADDDARL 120
Query: 162 FKFW 165
F W
Sbjct: 121 FANW 124
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 33.1 bits (75), Expect = 0.15
Identities = 20/73 (27%), Positives = 35/73 (47%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E+ +E E +E + E++ + E+E D+ +E ++ E ++ V Q
Sbjct: 453 DEDDMDEQESGDERADGEDDSDSSYSYSTTSSEDESDSADDSWGDESDSGIEHDDGGVGQ 512
Query: 231 KKNEEEEEEEEVL 243
EEEEEE VL
Sbjct: 513 AIEEEEEEERAVL 525
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 31.5 bits (72), Expect = 0.15
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
DEI+EE EE+ +KK K + +++ ++ + + E + +EE++ E+EE
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDD-------EDEE 126
Query: 238 EEE 240
+EE
Sbjct: 127 DEE 129
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 32.7 bits (75), Expect = 0.16
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN+ E + E+ + E + + EEE E +KK ++I ++E EE E+
Sbjct: 280 ENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQN 339
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ ++K+ + EE + ++ E+
Sbjct: 340 LIEERKELNSKLEEIQKKLEDLEKRLE 366
Score = 30.8 bits (70), Expect = 0.65
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+GE KE E NEEE E+K+K ++ E+E+ +E ++ EE + + E
Sbjct: 295 LKNSGEPSLKEIHE--ARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLE 352
Query: 226 EVVKQKKNEEEEEEEEVLIK 245
E+ K+ ++ E+ E+ K
Sbjct: 353 EIQKKLEDLEKRLEKLKSNK 372
Score = 28.4 bits (64), Expect = 4.1
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
E+ +++E +EE E EE K+ +K EE +++ + E +EK +
Sbjct: 324 EKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLKSNKS 373
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 32.4 bits (74), Expect = 0.16
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 192 KQKKNKEE-EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
+Q + + ++EEEE++ E E E+ E+ +KQK EE++ E E
Sbjct: 113 RQLRFLAQKQKEEEERRVERRREL----GLEDPEQLRLKQKAKEEQKAESEET 161
Score = 32.0 bits (73), Expect = 0.25
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 171 EEEKKEEDEIEEE-ENEEEEEVKQKKNKEEEEEEEE 205
EEE++ E E E+ E+ +KQK +E++ E EE
Sbjct: 125 EEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 27.7 bits (62), Expect = 5.4
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIE-KEEGENEEEEEE 225
+ ++EEE +++ + E E E+ ++ K + E + E EE
Sbjct: 119 AQKQKEEE--ERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 32.6 bits (75), Expect = 0.17
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 171 EEEK--KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E E+ K+ +E E+ + +E ++ K EE EK ++E +K ++++ EE +
Sbjct: 505 EIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIE 564
Query: 229 KQKKNEEEEEEEEVLIKLEE 248
K+ E E++EE+ K EE
Sbjct: 565 WLKEELEGEDKEEIEAKTEE 584
Score = 31.4 bits (72), Expect = 0.42
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 180 IEEEENEEEEEVKQKKNKEE-EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
E++ E ++ EE ED+ KE E + E EE V +K+ +EE
Sbjct: 489 KEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEG 548
Query: 239 E---EEVLIKLEEEEE 251
+ E K+EE E
Sbjct: 549 DKLPEADKKKVEEAIE 564
Score = 30.3 bits (69), Expect = 1.1
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 174 KKEEDEIEEEE--NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
K+++ I +++E E K +E E++++KE E K E E E+ +K++
Sbjct: 489 KEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEA-KNEAEEYVYSLEKSLKEE 547
Query: 232 KNEEEEEEEEVLIKLEEE 249
++ E +++ + + E
Sbjct: 548 GDKLPEADKKKVEEAIEW 565
Score = 29.5 bits (67), Expect = 1.6
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+++ K+++ I G +++E E V ++ E+++ + I+ + E E
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 31.8 bits (73), Expect = 0.19
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
D +E E E++ K + ++E+ + E E+E + E E E +
Sbjct: 57 AADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 32.7 bits (75), Expect = 0.19
Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVK 229
EE KE E +E + E++++ K + E + E + ++E+++ E + ++
Sbjct: 374 EEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIE 433
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
K NE EEE+E+ ++++++E
Sbjct: 434 AKINELEEEKEDKALEIKKQEWK 456
Score = 32.3 bits (74), Expect = 0.25
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E E E E+K E+E E+E+++ + + + +E+ K E EI E
Sbjct: 805 EEVSRIEARLREIEQKLNRLTLEKE-YLEKEIQELQEQRIDLKEQIKSIEKEI--ENLNG 861
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++EE EE +++ + + E L L++E +
Sbjct: 862 KKEELEEELEELEAALRDLESR-LGDLKKERDE 893
Score = 32.0 bits (73), Expect = 0.33
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E +++ +E+E + ++ + + + K K E EEE + ED ++E EEE E V+
Sbjct: 898 LRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQ 957
Query: 230 QKKNEEEEE 238
+ EEE
Sbjct: 958 AELQRVEEE 966
Score = 31.2 bits (71), Expect = 0.52
Identities = 21/88 (23%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK-EEDEIEKEEGENEEEEE 224
+ I +E++ + + + + E+E E K +E EEE EE + ++E G+ ++E +
Sbjct: 833 KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERD 892
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++ + E E + EE+ ++E++ +
Sbjct: 893 E--LEAQLRELERKIEELEAQIEKKRKR 918
Score = 30.8 bits (70), Expect = 0.71
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE-KKEEDEIEKEEGENEEEEE 224
E I E++ E ++EE EEE E + ++ E + KKE DE+E + E E + E
Sbjct: 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++ + ++ + E+ KLE EE
Sbjct: 907 E--LEAQIEKKRKRLSELKAKLEALEEE 932
Score = 30.0 bits (68), Expect = 1.6
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKN-KEEEEEEEEKKEEDEIEKEEGENEEEEE 224
EN+ G++E+ EE E+EE E + + + K+E +E E + E E + EE E + E++
Sbjct: 857 ENLNGKKEELEE-ELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK 915
Query: 225 EEVVKQKKNEEEEEEEEV 242
+ + + K + E EEE+
Sbjct: 916 RKRLSELKAKLEALEEEL 933
Score = 29.7 bits (67), Expect = 2.0
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +KE +++E+EE + +E +++ + E+E + + E+++ E EE EE
Sbjct: 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE------ 772
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
++ EE ++ +L
Sbjct: 773 DLHKLEEALNDLEARLSHSR 792
Score = 29.7 bits (67), Expect = 2.1
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE-DEIEKEEGENEEEEEEEVVKQ 230
E + E E + EE E + E K+K+ E + + E +EE EIE +GE+EE EEE+ +
Sbjct: 895 EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954
Query: 231 KKNEEEEEEEEVLIKLEE 248
E + EE + LE
Sbjct: 955 DVQAELQRVEEEIRALEP 972
Score = 29.3 bits (66), Expect = 2.5
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI--EKEEGENEEEEEEEVV 228
E+ K E+ + + E + E + EEE + E E+ N E+E +
Sbjct: 772 EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+++ E +E+ ++ +++ E+
Sbjct: 832 EKEIQELQEQRIDLKEQIKSIEK 854
Score = 28.9 bits (65), Expect = 2.8
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 172 EEKKEEDEIEEEENEEEE-EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E++ E EI+E + + + + + K ++E E KKEE E E EE E + E +
Sbjct: 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
Query: 231 KKNEEEEEEEE 241
K E +E E +
Sbjct: 887 LKKERDELEAQ 897
Score = 28.5 bits (64), Expect = 4.6
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE----KEEGENEEEEEEE 226
E K+E ++ E E + + + + + + E EIE +EE E EE E
Sbjct: 684 EGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE 743
Query: 227 VVKQKKNEEEEEEEEVLIKLEEE 249
+E E + L +LE
Sbjct: 744 EDLSSLEQEIENVKSELKELEAR 766
Score = 28.5 bits (64), Expect = 4.7
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 11/103 (10%)
Query: 160 EIFKFWENIAGEEEKKEE---------DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
EI K E + EEEK +E +E+E + E+K+ + + EE EE+ K E+
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
Query: 211 EIEKEEGENEEEEEEEVVKQKKNEEEE--EEEEVLIKLEEEEE 251
+ E E+ + EEE E L ++E++
Sbjct: 780 ALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN 822
Score = 28.1 bits (63), Expect = 5.6
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE----NEEEEEEE 226
+ DE+ +E ++ ++ + + + E+ E+EE+K ++ +E+ E + +E E +
Sbjct: 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++ EE EE L KLEE +
Sbjct: 758 SELKELEARIEELEEDLHKLEEALND 783
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.9 bits (73), Expect = 0.19
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
+D EE EE KEEE E EKKE
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.5 bits (64), Expect = 2.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEE--EEKKEE 209
E K+ +EE EE E K +E E E E KK++
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
++ K +E EE E K++++ E E++E +KK+
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 26.9 bits (60), Expect = 8.6
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E K K EE EE + E+E E E++E K+KK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES----KKKK 196
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 31.5 bits (72), Expect = 0.19
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
E +++ KE ++EEE ++E +E+E GE E E E +
Sbjct: 95 EYQRQSRKEAKKEEELQQELEELEARVGELELEIERQK 132
Score = 27.2 bits (61), Expect = 5.0
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
++++ E +K EEE +E EE++ + + E E E +K
Sbjct: 93 VYEYQRQSRKEAKK------EEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 32.5 bits (74), Expect = 0.19
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E E++ ++K + + E+GE E+ +++ + K EE E E + K +
Sbjct: 367 EIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPEERERLEKIDKAQA 417
Score = 29.1 bits (65), Expect = 2.4
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 165 WENIAG-------EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
W N A K+ + EIE++ +E+ ++ K E E+ K +I + +
Sbjct: 346 WSNTASGTLTDSYVTPKEAQAEIEQKLAQEKAQLDAAVEKGELTPEQAK----QIARAKL 401
Query: 218 ENEEEEEEEVVKQ 230
E EE E E + +
Sbjct: 402 EPEERERLEKIDK 414
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 32.4 bits (74), Expect = 0.20
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 169 AGEEEKKE----EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
AG + E E EI E E + KK E E + EE+ E
Sbjct: 119 AGGGGEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLR 178
Query: 225 EEVVKQ 230
+ K
Sbjct: 179 YPMNKG 184
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 32.2 bits (73), Expect = 0.21
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+ ++K E+E++E+ E++ K +E+ +E + +ED+ E ++ +E E K
Sbjct: 95 RKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGK 154
Query: 230 QKKNEEEEEEEE 241
+ E+ E
Sbjct: 155 VHEETEDSYHVE 166
Score = 30.7 bits (69), Expect = 0.54
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E K +E E+ + EE +Q K +E+ E++ E+ + E+ E + E ++V ++
Sbjct: 150 LEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEE 209
Query: 231 KKNEEEEEEEEVLIKLEE 248
+EE+ E+ EE
Sbjct: 210 DYDEEDNPVEDSKAIKEE 227
Score = 30.3 bits (68), Expect = 0.81
Identities = 16/78 (20%), Positives = 43/78 (55%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ + E + + ++ +++ E+ENE+ +E +K + + E ++ +E+ + E E+
Sbjct: 161 DSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVED 220
Query: 220 EEEEEEEVVKQKKNEEEE 237
+ +EE+ K+ E++E
Sbjct: 221 SKAIKEELAKEPVEEQQE 238
Score = 29.1 bits (65), Expect = 2.0
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI---EKEEGENEEEEEEEVVKQKK 232
EE E EE + K K+ EEE +E+ + ++I ++EE +E + + K
Sbjct: 80 EEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLL 139
Query: 233 NEEEEEEEEVLIKLEEEEE 251
E+ ++ +E L + EE
Sbjct: 140 AEDSDDRQETLEAGKVHEE 158
Score = 28.7 bits (64), Expect = 2.9
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E+ E+ E+ ++ +E K +++E E+ +E E+ E K E ++ EE+ +
Sbjct: 158 ETEDSYHVEETASEQYKQDMKE---KASEQENEDSKEPVEKAERTKAETDDVTEEDYDEE 214
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+ + +EE+ + EE++
Sbjct: 215 DNPVEDSKAIKEELAKEPVEEQQ 237
Score = 26.8 bits (59), Expect = 9.4
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 171 EEEKKEEDEIEEEENE------EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E+ + ++I + E E + + K E+ ++ ++ E EE E+ E
Sbjct: 107 EQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVE 166
Query: 225 EEVVKQKKNEEEEEEEE 241
E +Q K + +E+ E
Sbjct: 167 ETASEQYKQDMKEKASE 183
Score = 26.8 bits (59), Expect = 9.5
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 171 EEEKKEEDEIEEEE---NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
EEE KE+ + E+ +++EE+ K+ + +E++ ++ D+ ++ + EE E
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETED 161
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E+ ++ + + E+EN
Sbjct: 162 SYHVEETASEQYKQDMKEKASEQEN 186
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 31.9 bits (73), Expect = 0.21
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN----------EEEEE 224
+ E E E+E E+ E ++ E+ + EE+++EED + + +EE E
Sbjct: 179 EYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVE 238
Query: 225 EEVVKQKKNE 234
E +++++K E
Sbjct: 239 EWLLEKRKRE 248
Score = 29.2 bits (66), Expect = 1.8
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 179 EIEEEENEEEEEVKQKKNKE-------------EEEEEEEKKEEDEIEKEEGENEEEEEE 225
E+ E+E E+ +E +K E +EE+ + E E EKE E EE +
Sbjct: 138 ELFEKEPEDRKEKPRKSRAELYKRIDADYYGYRDEEDGVLLEYEAEREKELIEKLVEEWK 197
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
E+ + EE+E EE + +++
Sbjct: 198 EIQDEDLQAEEDEREEDIYIPLDDD 222
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 32.3 bits (74), Expect = 0.22
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ EEE E+ + E E+E+ + E+ EE+V
Sbjct: 260 APPQPPEEEP------PPPPPPPEDDDDPPEDEEEQDDAEDRALEEIV 301
Score = 30.4 bits (69), Expect = 1.1
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
+ +E E+ EEE+++ E + +EI
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEI 300
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.0 bits (73), Expect = 0.22
Identities = 18/68 (26%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVK-QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ E E+ E EEE++ + + + +EEEEE + ++ E ++ E ++EEE E+E
Sbjct: 18 LEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKE 77
Query: 227 VVKQKKNE 234
+ ++++ +
Sbjct: 78 LQREERLK 85
Score = 28.9 bits (65), Expect = 2.2
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
FW + EEE E+DE E E EEEEE + E++E E +E+E EKE E
Sbjct: 27 FFWTYLLFEEE--EDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERL 84
Query: 223 EEEEVVKQKK 232
++++ VK K
Sbjct: 85 KKKKRVKTKA 94
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 32.6 bits (74), Expect = 0.22
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---EGEN 219
K ++ +++ K+ + E+ + E + + K+ EE++ KKEE+E +
Sbjct: 463 KLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAARAAAQAAA 522
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE E +KQ K + E E +++ L+ +EE
Sbjct: 523 SREECAESLKQAKQDLEMEIKKLEHDLKLKEE 554
Score = 29.5 bits (66), Expect = 1.9
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE-EEEEEEVVK 229
EEE + + EE K+ K++ E E +K E D KEE E+E +E+ K
Sbjct: 509 EEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRK 568
Query: 230 QKKNEEEEE 238
+++E+E E
Sbjct: 569 YQESEKETE 577
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 31.7 bits (73), Expect = 0.22
Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A EE K E E E E E+++++ + ++EE ++++ +EK+E EE+E+E
Sbjct: 58 AKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAA 117
Query: 229 KQKKNEEEEEEEEVLIKLEEEE 250
+Q++ EE+EEE E LI+ +++E
Sbjct: 118 RQQQLEEKEEELEELIEEQQQE 139
Score = 27.1 bits (61), Expect = 6.6
Identities = 26/77 (33%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
+K+E+ +EE+E E +Q + KEEE EE ++++ E+E+ G EE +E ++++ +
Sbjct: 102 EKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTAEEAKEILLEEVE- 160
Query: 234 EEEEEEEEVLIKLEEEE 250
E + E +IK EEE
Sbjct: 161 AELKHEAAKMIKEIEEE 177
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 32.5 bits (74), Expect = 0.23
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+ E E+ + E + + + E E + E E E E +E ++
Sbjct: 241 HGRTEVTEEDLKLAVELVLLPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDG 300
Query: 233 NEEEEEEEEVLIKLEE 248
E ++ EE++ E
Sbjct: 301 EETDQIPEELMFDAVE 316
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 32.1 bits (74), Expect = 0.23
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+E E EE E E+V+ + E+ EE +EED+ + ++ +E+++E V
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEV 386
Score = 31.0 bits (71), Expect = 0.58
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
IEE EE EE + + E ++ +++ +E+E+E+ ++ +++ +E+++
Sbjct: 330 TFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDW--------DEDDD 381
Query: 238 EEEEV 242
E EV
Sbjct: 382 EGVEV 386
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 31.9 bits (73), Expect = 0.24
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 201 EEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E K E E E+E +++EEE++++ ++ +E ++++ K+E E E
Sbjct: 207 EAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREK 258
Score = 29.9 bits (68), Expect = 1.0
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 168 IAGEEEKKEEDEIE-EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
I E K E E E E E+++E +Q +E +E K+ E + E E E+E
Sbjct: 206 IEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQER 265
Query: 227 VVKQKKNEEEE 237
+++ K E+EE
Sbjct: 266 MLEHKLQEQEE 276
Score = 29.2 bits (66), Expect = 1.9
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 177 EDEIEEE-ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E IE E E E +Q+ +E+++EEE+ E E + E+ ++ E++ +++
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQ--EHVKQLIEKMEAEREKLL 260
Query: 236 EEEEEEVLIKLEEEEE 251
E+E + KL+E+EE
Sbjct: 261 AEQERMLEHKLQEQEE 276
Score = 28.4 bits (64), Expect = 3.3
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E++K+EE +E +E +E VKQ K E E E+ E++ + + + +E+EE++K+
Sbjct: 225 EKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEH----KLQEQEELLKE 280
Query: 231 K-KNEEEEEEEEVLI 244
K E E ++E+
Sbjct: 281 GFKTEAESLQKEIQD 295
Score = 27.6 bits (62), Expect = 6.1
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 183 EENEEEEEVKQKKNKEEE---EEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE-- 237
E+ E ++ K + E E EK++E+E E E +E + + +K E E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKL 259
Query: 238 -EEEEVLIKLEEEEEN 252
E+E +++ + +E+
Sbjct: 260 LAEQERMLEHKLQEQE 275
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 32.3 bits (73), Expect = 0.25
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ EE K +K + + ++ E+ E + E E + EE E V +NE EEE +
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELD 180
Score = 31.2 bits (70), Expect = 0.60
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
++EEE+ E++ ++K K +E+ E++ E + + EE E E E ++ E+++
Sbjct: 127 DVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDG 186
Query: 239 EE 240
E+
Sbjct: 187 ED 188
Score = 30.8 bits (69), Expect = 0.85
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+K + E E+ E+ +K+ K KK ++++E + E+E + EE
Sbjct: 115 RRTRRKAAAASSDVEEEKTEKKVRKRRKV-------KKMDEDVEDQGSESEVSDVEESEF 167
Query: 230 QKKNEEEEEEEEVLIKLEEEE 250
E E EEE L K + E+
Sbjct: 168 VTSLENESEEELDLEKDDGED 188
Score = 27.7 bits (61), Expect = 6.4
Identities = 16/68 (23%), Positives = 27/68 (39%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ AG +K E +EE +E V +KK + +K + E E +E
Sbjct: 42 FLLAAGSRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVN 101
Query: 225 EEVVKQKK 232
E+ K+
Sbjct: 102 EDAALDKE 109
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 31.4 bits (72), Expect = 0.26
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV---KQKKNEEEEEEEEVL 243
EE K + + EE E E ++++E ++ E E+E +E + + + + E + EE + +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSV 61
Query: 244 IKLEEEEEN 252
++ E EN
Sbjct: 62 LRARAEVEN 70
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 31.9 bits (73), Expect = 0.26
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
EI +E E +E +K KEE E+ ++K E E++KE N ++V K E E
Sbjct: 310 EIVKETYYEVKEKVEKVTKEEAIEKAKEKAEKELKKELDPN-----AKIVSDKILSERVE 364
Query: 239 EEEVLIKL 246
+V + +
Sbjct: 365 GGKVKVTV 372
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 31.7 bits (72), Expect = 0.27
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+D E+EE E++ +E+EE+E EEDE E E EEE+EE VK
Sbjct: 31 AQDLTEDEEAEDDVV-------DEDEEDEAVVEEDENELTE---EEEDEEGEVK 74
Score = 30.9 bits (70), Expect = 0.52
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
E+E+ E+D ++E+E E+E V++ +N+ EEEE+E+ E
Sbjct: 34 LTEDEEAEDDVVDEDE-EDEAVVEEDENELTEEEEDEEGE 72
Score = 30.9 bits (70), Expect = 0.56
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE 204
F +++ +EE +++ E+EE+E E + + EEEE+EE
Sbjct: 28 FASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEE 70
Score = 30.5 bits (69), Expect = 0.72
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
++ E+E+ E+D ++++E + EE+E + EEE+EE EV
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDE--NELTEEEEDEEGEV 73
Score = 27.8 bits (62), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
A ++ E++E E++ +E+EE E EE+E + +E E EEGE
Sbjct: 29 ASAQDLTEDEEAEDDVVDEDEE------DEAVVEEDENELTEEEEDEEGE 72
Score = 27.0 bits (60), Expect = 9.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 208 EEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+D E EE E++ +E+E + EE+E L + EE+EE
Sbjct: 31 AQDLTEDEEAEDDVVDEDE----EDEAVVEEDENELTEEEEDEE 70
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 32.1 bits (73), Expect = 0.27
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 2/124 (1%)
Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDE 179
+L + ++ + + + +I K I E K
Sbjct: 347 AILKLLYVKDIVPISELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAI 406
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
++ E +EEE + K E+ EE+ E + K+ E EE + K+K+ E E
Sbjct: 407 LKNAEIKEEEG--KITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFV 464
Query: 240 EEVL 243
E+VL
Sbjct: 465 EKVL 468
Score = 30.9 bits (70), Expect = 0.55
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGE-NEEEEEEEVVKQKKNEEEEEEEEVLIKLE 247
+E +++ KE+ E++EE+KEE +I+K + + E + K E +EEE ++ IK+E
Sbjct: 365 KEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVE 424
Query: 248 EEEE 251
+ EE
Sbjct: 425 KSEE 428
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 31.5 bits (72), Expect = 0.27
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
+R A+ I G VLDV GTG LL
Sbjct: 38 LWRRALISLLGIKPGDKVLDVACGTGDMALL 68
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 31.9 bits (73), Expect = 0.28
Identities = 17/60 (28%), Positives = 32/60 (53%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+E E EE E++Q++ + E+ E E +E+ E EE+E + K+ ++ E+E
Sbjct: 146 LEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKE 205
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 31.8 bits (72), Expect = 0.28
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+ E EE ++E E EV E + E ++K E + +G+ E E+ + +
Sbjct: 208 SYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESE 267
Query: 233 NEEEEEEEE 241
+E EEE E
Sbjct: 268 DEYEEEAGE 276
Score = 30.3 bits (68), Expect = 0.90
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 172 EEKKEEDEIEEE---ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E ++ +DE+E E ++ E + K K E E K ++ + E E+E E+E E
Sbjct: 214 ENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEE 273
Query: 229 KQKKNEEEEEEEE 241
++ E E++ EE
Sbjct: 274 AGEEQENEDKGEE 286
Score = 28.3 bits (63), Expect = 3.7
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E+ ++ + EE E + ++ E + K K E E K ++ + E
Sbjct: 202 LDDEVTSYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETE 261
Query: 217 GENEE--EEEEEVVKQKKNEEEEEE 239
E+E E EEE ++++NE++ EE
Sbjct: 262 IEDESEDEYEEEAGEEQENEDKGEE 286
Score = 27.6 bits (61), Expect = 5.8
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E ++ E EEN++E E + ++ E + E KE+ E E + ++ E +
Sbjct: 204 DEVTSYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIE 263
Query: 231 KKNEEEEEEE 240
++E+E EEE
Sbjct: 264 DESEDEYEEE 273
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 32.1 bits (73), Expect = 0.30
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
W+ + +EKKEE + E+ E + EEV ++ +EE+ E E+ IE
Sbjct: 273 WDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 29.0 bits (65), Expect = 3.0
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+E+K+KK +++EE+ EE K E+ E+ E E +
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 28.7 bits (64), Expect = 4.1
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+K+ K K+EE ++EEK EE + E+ + E EEEE+
Sbjct: 276 LKELKEKKEE-KDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 27.5 bits (61), Expect = 7.8
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
K+ KEE++EE+ ++ + E EE E EE+ + +K N E
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 27.5 bits (61), Expect = 8.1
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 214 KEEGENEEEEEEEVVKQKKNEEEEEEEE 241
KE+ E ++EE+ E VK ++ +EE EEEE
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEE 307
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 31.7 bits (72), Expect = 0.30
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE-EEEE 224
E + + E+ E+ ++E EEE K+ E+ +EE+ + EEG E E++E
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKE----VEKLGKEEESLFKRVALEEGLKELEQDE 419
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E +K+ EE+E E++ ++ E E+
Sbjct: 420 ENFLKELSKEEKELLEKLKMEASEVEKL 447
Score = 27.9 bits (62), Expect = 6.7
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 148 KCILHSAPSYSPEIFKFWENIAGEEE---KKE--EDEIEEEENEEEEEVKQKKNKEEEEE 202
K I+ A E+ K E + EEE K+ E+ ++E E +EE +K+ +E+E
Sbjct: 375 KTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELL 434
Query: 203 EEEKKEEDEIEKEEG 217
E+ K E E+EK G
Sbjct: 435 EKLKMEASEVEKLFG 449
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.1 bits (73), Expect = 0.31
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+E+ EE+++E +++ +EE E E + EE+ EE+K E ++ + + E E+
Sbjct: 246 FEDFLLEEKRRELEKLAKEEAERE------RQAEEQRRREEEKAAMEADRAQAKAEVEKR 299
Query: 225 EEVVKQ 230
E ++
Sbjct: 300 REKLQN 305
Score = 29.1 bits (65), Expect = 2.7
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE-EDEIEKEEGENEEEEEEEVV 228
+ +ED + V++ N +EE + + + E +E+ E E+E E E+
Sbjct: 28 QQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQS 87
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
K+ +EE + ++ +++
Sbjct: 88 DVLKSSSIVKEESISTDMDGIDDD 111
Score = 27.5 bits (61), Expect = 8.8
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 203 EEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE+++E +++ KEE E E + EE Q++ EEE+ E
Sbjct: 252 EEKRRELEKLAKEEAERERQAEE----QRRREEEKAAME 286
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 31.6 bits (71), Expect = 0.33
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEE------ENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
E EN + + + EE +VK K K+E+ + ++ E +
Sbjct: 155 EHPTITENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHK 214
Query: 214 KEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE + +EE+EEE V+++ +EE + +
Sbjct: 215 TEEKQPQEEQEEEEVEEEAKQEEGQGTD 242
Score = 31.6 bits (71), Expect = 0.35
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
+E+ + + +E++ EE+ Q++ +EEE EEE K+EE + +
Sbjct: 198 KQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 30.4 bits (68), Expect = 0.75
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQ--KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E + + E N EE ++ + + + K+E + K + +E + EE K
Sbjct: 161 ENQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEE--K 218
Query: 230 QKKNEEEEEEEEVLIKLEEEE 250
Q + E+EEEE E K EE +
Sbjct: 219 QPQEEQEEEEVEEEAKQEEGQ 239
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 31.7 bits (72), Expect = 0.34
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
+ IA EE+ DE+ E E+ V ++ +EEEEEEEE++EE + E
Sbjct: 372 DKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPME 424
Score = 27.1 bits (60), Expect = 9.6
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 189 EEVKQKKNKEEEEEEEE------KKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
E++ K EE+ + K++ + + E EEEEEEE ++ E EE V
Sbjct: 368 EDLYDKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPV 427
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 31.3 bits (71), Expect = 0.35
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ +KK+KE+ EEE+K E D+ + EE EN+ + EE +++ +
Sbjct: 65 TKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSD 117
Score = 27.4 bits (61), Expect = 5.2
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
K+ K K++E+ EE+K+ + ++++ EE E E + +E
Sbjct: 65 TKKSKKKDKEKLTEEEKKPES------DDDKTEENENDPDNNEESGDSQESA 110
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 31.4 bits (72), Expect = 0.35
Identities = 10/47 (21%), Positives = 25/47 (53%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
E E+ ++ +++++++E++ E+DE E + G + EE
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 27.9 bits (63), Expect = 4.8
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
I+G + E E + ++ E+++++ ++EDE ++EE + + EE
Sbjct: 26 ISGFIDPNAAAAAATAAAIESELDE----EDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 27.5 bits (62), Expect = 6.4
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
E E +E+ ED+ + +E E+E++EEE + + EE + E
Sbjct: 43 AIESELDEEDLEDDDDDDEDEDEDDEEEA-------DLGPDPEEARERFAE 86
Score = 26.8 bits (60), Expect = 9.6
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
N E + E++ ++++++E+E +E++EEE L EE
Sbjct: 33 NAAAAAATAAAIESELDEEDLEDDDDDDEDE-------DEDDEEEADLGPDPEE 79
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 31.0 bits (70), Expect = 0.38
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E++IE+ E +++ K K EE + KK +DE+ +E E E+ +E + +K + E
Sbjct: 6 EEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIE 65
Query: 237 EEEEEVLIKLEEEEE 251
EE E + E+ +
Sbjct: 66 EEISEKEKVMSEKLK 80
Score = 28.3 bits (63), Expect = 3.7
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+EK EE I+ +++++E + + E+ +E ++ D IE+E E E+ E++ +
Sbjct: 24 KEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPA 83
Query: 232 KNEEEEEEEEVLIKLEE 248
+ EEEE KLEE
Sbjct: 84 QMSSTSEEEEKKAKLEE 100
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 30.4 bits (69), Expect = 0.43
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 167 NIAGEEEKKEEDEIEEEEN-EEEEEVKQKKNKEEEEE--EEEKKEEDEIEKEEGE--NEE 221
+ +K++ EI + EE E K+ EE+++ ++ KE+ E E+ + + +E
Sbjct: 25 QVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSEN 84
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E VK K + E E E
Sbjct: 85 ATENNTVKATKKQLFSSEYEQTSSSSESTSE 115
Score = 28.1 bits (63), Expect = 3.1
Identities = 16/74 (21%), Positives = 30/74 (40%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A + K + E+ + E + + E ++E EE + + E+ E+EE+
Sbjct: 18 AENDGKLQVKPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Query: 229 KQKKNEEEEEEEEV 242
Q +E E V
Sbjct: 78 NQLFSENATENNTV 91
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.5 bits (69), Expect = 0.43
Identities = 16/65 (24%), Positives = 36/65 (55%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+E E+E+ E +E ++K+ + ++E++EKKE+ EK + + + K+ +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 237 EEEEE 241
++EE
Sbjct: 152 TKKEE 156
Score = 30.5 bits (69), Expect = 0.48
Identities = 20/74 (27%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
N+ EE +KE+ +E ++E EE + K K+E++E++EKK +++ K++ + +
Sbjct: 89 NLFPEESEKEQ----KEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTK 144
Query: 227 VVKQKKNEEEEEEE 240
+K ++EE +
Sbjct: 145 KATKKTTTKKEEGK 158
Score = 27.0 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 28/39 (71%)
Query: 208 EEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
E+ ++++ ++E EE+E +K KK ++E++E++V KL
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL 130
Score = 27.0 bits (60), Expect = 6.9
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
E E+E K+ + EE+E + K+E + +KE+ E+ +++ K KN ++ ++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 244 IKLEEEE 250
K EE +
Sbjct: 152 TKKEEGK 158
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 31.5 bits (72), Expect = 0.44
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 178 DEIEEEENEE-EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+EIEEE EE EEE+K+ + ++E E E+K E + +K + ++EE + EE
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Query: 237 EEE 239
E
Sbjct: 124 PEP 126
Score = 31.1 bits (71), Expect = 0.57
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+EE E E EE +++ + E E+E + E+ +EK+ + ++ ++E ++ E E E
Sbjct: 63 LEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAE 122
Query: 240 EEV 242
E
Sbjct: 123 EPE 125
Score = 27.2 bits (61), Expect = 9.1
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 198 EEEEEEEEKKEED--EIEKEEGENEEEEEEEVVKQ--KKNEEEEEEEEVLIKLEEEE 250
EEE EE ++E E EKE E E++ E+ K+ KK ++EE E L++LE EE
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 31.3 bits (71), Expect = 0.44
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
+E ++ E ++ EEE E+++ E + ++ + ++++EE+ V++ K + E
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDRE 122
Score = 29.4 bits (66), Expect = 1.5
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+E + + E ++ EEE E+++ + ++ +++ E +++EE++V + K + E
Sbjct: 64 SASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDRE 122
Score = 27.8 bits (62), Expect = 5.0
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
+E +++ + ++E+ EE +++ E +K +E++++EE ++
Sbjct: 66 SQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVR 114
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.9 bits (70), Expect = 0.51
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEE--EEEEEEKKEEDEIEKEEG 217
E + E + E+E++E+ + ++ EEE+++ ++KNK+ +E E E+ +
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELETSTLPAAELIAQHK 202
Query: 218 ENEEEEEEEVVKQKKNE 234
+N + E +V K K +
Sbjct: 203 KNSVKLEMQVEKPKPEK 219
Score = 30.5 bits (69), Expect = 0.75
Identities = 17/81 (20%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENE-----------EEEEVKQKKNKEEEEEEEEKKEE 209
++ NI E KK+ + ++E + E+EE+++ E+EEEE+ +
Sbjct: 106 VYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLL 165
Query: 210 DEIEKEEGENEEEEEEEVVKQ 230
+ E+E+ N+ + ++ ++ +
Sbjct: 166 QKEEEEQQMNKRKNKQALLDE 186
Score = 30.2 bits (68), Expect = 1.1
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
I+ E +++ E QK+NK+ ++ +EK ++ E EE E+EEEE +++ ++EEE
Sbjct: 113 IDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEE--QRRLLLQKEEE 170
Query: 240 EEVLIKLEEEEE 251
E+ + K + ++
Sbjct: 171 EQQMNKRKNKQA 182
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 31.1 bits (70), Expect = 0.51
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE----KKEEDEIEKEEGENEEEEEEE 226
E KE D+I E +++ + K+K EEE+E+ K++ +E E E
Sbjct: 146 ESMDKEVDDILGEGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSER 205
Query: 227 VV---------KQKKNEEEEEEEEVLIKLEEEEEN 252
K+K NEE+EE+ E E E+
Sbjct: 206 SNIGGRGPRGHKRKLNEEDEEDAESESSFESSNED 240
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 30.0 bits (68), Expect = 0.55
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ E + E K K++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPK-KKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 31.4 bits (72), Expect = 0.56
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 173 EKKEEDEIE--EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EKK ++E++ + ++ + ++ K EEEE++E+ D+ K +G+ EEEEEE+ K
Sbjct: 493 EKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEKD 552
Query: 231 KKNEEEEEEEEVLI 244
K+ EE+E E +I
Sbjct: 553 KETEEDEPEGPKII 566
Score = 27.9 bits (63), Expect = 5.8
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 192 KQKKNKEE----EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLE 247
K+KK KEE + +K +E + E++ E E++E+ + K++ +EEEEE + +
Sbjct: 492 KEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKEEK 551
Query: 248 EEEEN 252
++E
Sbjct: 552 DKETE 556
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 30.0 bits (68), Expect = 0.57
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE K+ +E ++E ++ +E K+ EEE ++E+ E E ++ ++E E E
Sbjct: 52 EERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVT 111
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
EE +E++ + EE
Sbjct: 112 DYEEEYIDEDKYKTTVTVEE 131
>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase. This
model represents an O-methyltransferase believed to act
at two points in the ubiquinone biosynthetic pathway in
bacteria (UbiG) and fungi (COQ3). A separate methylase
(MenG/UbiE) catalyzes the single C-methylation step. The
most commonly used names for genes in this family do not
indicate whether this gene is an O-methyl, or C-methyl
transferase [Biosynthesis of cofactors, prosthetic
groups, and carriers, Menaquinone and ubiquinone].
Length = 224
Score = 30.7 bits (70), Expect = 0.58
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 32 VRNEAYRAAICDNPNIFAGKTVLDVGTGTG---KSILLQG---HGVDHHSFCTKVHPLDH 85
+R + R I N G VLDVG G G + + G G+D +V L
Sbjct: 28 LRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHA 87
Query: 86 YAPQYLILEVIQNKIENV--ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGV 143
L +E +E++ + + D++ + L H + I A + LKP G+
Sbjct: 88 KKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV---LEHVPDPQAFIRACAQLLKPGGI 144
Query: 144 MY 145
++
Sbjct: 145 LF 146
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 30.3 bits (68), Expect = 0.61
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
++E +EEEK + E+ E E+E+ Q + + +E EE+ KL+++E
Sbjct: 5 EKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEV 59
Score = 30.3 bits (68), Expect = 0.62
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
+E+E+E N+EEE K N E+ E E+++ ++ + + + +E E +KQK ++E
Sbjct: 2 EEVEKEINKEEE--KDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEV 59
Query: 238 EEEEVL 243
E +E L
Sbjct: 60 EAQEYL 65
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 30.8 bits (69), Expect = 0.62
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
++E+ EEK+ ++++ ++ E+ E++ ++ EE +E
Sbjct: 97 RKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPT 142
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 31.0 bits (70), Expect = 0.62
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A + E+ EI E+ +EE+ + + +E + + + E + E + E E E +
Sbjct: 283 AETRREAEQAEILAEQAIQEEKAQAE--QEVQHAKALEAREMRVGLIERQKETELEPQER 340
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
N + + +E E
Sbjct: 341 SYFINAAQRQAQEEAKAAANIAE 363
Score = 29.8 bits (67), Expect = 1.5
Identities = 16/82 (19%), Positives = 30/82 (36%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G E+++E E+E +E Q++ +EE + E + E E EE +
Sbjct: 325 GLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAER 384
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
++ E + E
Sbjct: 385 AEQAALVAAAEAAEQEQVEIAV 406
Score = 29.0 bits (65), Expect = 2.7
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK-KEEDEIEKEEGENEEEEEEEVVKQ 230
+ E E+ + E E +Q + E+ +EEK + E E++ + E ++++
Sbjct: 270 ILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIER 329
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+K E E +E + +
Sbjct: 330 QKETELEPQERSYFINAAQRQA 351
Score = 28.3 bits (63), Expect = 4.4
Identities = 17/85 (20%), Positives = 38/85 (44%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
IA E +KE + E N + + V+ + ++ + E+ E +I E E E +
Sbjct: 224 EIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKA 283
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+++ + E E+ + + + + E
Sbjct: 284 ETRREAEQAEILAEQAIQEEKAQAE 308
Score = 27.9 bits (62), Expect = 5.5
Identities = 14/76 (18%), Positives = 28/76 (36%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ E++ + + E + + + + E + E+ EI E+ EE+ + E
Sbjct: 249 ELEVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAE 308
Query: 227 VVKQKKNEEEEEEEEV 242
Q E E V
Sbjct: 309 QEVQHAKALEAREMRV 324
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 30.8 bits (69), Expect = 0.63
Identities = 28/91 (30%), Positives = 41/91 (45%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+ E ++ KKE+ EEE E E E E +E + + E ++EE EN E
Sbjct: 246 EEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAE 305
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+EEV + +E EE+EE E E
Sbjct: 306 AHKEEVQSDRPDEIGEEKEEDDENEENERHT 336
Score = 28.1 bits (62), Expect = 4.9
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEV 227
A E E KE E ++E+ +EE E + +EE + + E E ++E+ ENEE E E+
Sbjct: 281 AAEIENKEVSEGDKEQQQEEVENAE--AHKEEVQSDRPDEIGEEKEEDDENEENERHTEL 338
Query: 228 VKQKKNEEEEEEEEVLIKLEE 248
+ + NE E+ EE ++E
Sbjct: 339 LADELNELEKGIEEKRRQMES 359
Score = 27.4 bits (60), Expect = 8.2
Identities = 20/74 (27%), Positives = 43/74 (58%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G++E+++E+ E ++EE + + EE+EE+++ EE+E E +E E E+ ++
Sbjct: 292 GDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIE 351
Query: 230 QKKNEEEEEEEEVL 243
+K+ + E +L
Sbjct: 352 EKRRQMESATNPIL 365
Score = 27.4 bits (60), Expect = 8.4
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E K+E +E EE+E + + E E E +E+EK E + E
Sbjct: 300 EVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMES 359
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 30.8 bits (70), Expect = 0.64
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE------- 224
+EK E D+I++ +E E++++++ K E + E+++ E +E+EK E ++ E
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQ 331
Query: 225 --EEVVKQKKNEEEEEEEEVLIKLEE 248
EE +K + + EE+ I+L++
Sbjct: 332 LIEEGLKSVRLADFYGNEEIKIELDK 357
Score = 29.7 bits (67), Expect = 1.5
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ K + + E +E + K E+ E KK +EI +E EE + K++
Sbjct: 376 KGAKVNLDRQLSELKEAIAYYESA-KTALEKAEGKKAIEEIREELI--EEGLLKSKKKKR 432
Query: 232 KNEEEEEEEEVLI 244
K +E E+ +
Sbjct: 433 KKKEWFEKFRWFV 445
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 30.5 bits (69), Expect = 0.66
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKE---EEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
EE++K+E E E EE E + + ++K +E ++ ++ K+ + +KE E+
Sbjct: 109 EEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGS 168
Query: 228 VKQKKNEEEEEEEEVL-----IKLEEEEE 251
K ++N +EE ++ L KL+++++
Sbjct: 169 AKPERNVSQEEAKKRLQEWELKKLKQQQQ 197
Score = 30.5 bits (69), Expect = 0.79
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
K+ ++ + EE+ KQ++ KE EE E ++ E +E + ++ + K +
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKK 155
Query: 235 EEEE 238
E E
Sbjct: 156 EAAE 159
Score = 29.7 bits (67), Expect = 1.1
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E K E E EN + Q++ K ++ EE++K+E E E+EE E + +E ++
Sbjct: 77 KEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEE 136
Query: 231 ---KKNEEEEEEEEVLIKLEEEE 250
+K ++ ++ K E E
Sbjct: 137 WCRQKAQQAAKQRTPKHKKEAAE 159
Score = 28.5 bits (64), Expect = 2.6
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 160 EIFKFW-ENIAGEEEKKEEDEI--EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E ++ W A + K+ + E E+ K + +EE KK E E ++
Sbjct: 132 EKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKK 191
Query: 217 GENEEEEEEEVVKQKKNEEEEEEE 240
+ ++++ EE ++++ +++EEEE
Sbjct: 192 LKQQQQKREEERRKQRKKQQEEEE 215
Score = 28.5 bits (64), Expect = 3.4
Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQ---KKNKEEEEEEEEKKEEDEIEKEEGEN 219
K E +E +KE +E E + +E+ ++ +K ++ ++ K +++ E
Sbjct: 106 KLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSL 165
Query: 220 ----------------EEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ +E E+ K K+ +++ EEE + +++EE
Sbjct: 166 SGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEE 213
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 30.6 bits (69), Expect = 0.67
Identities = 14/81 (17%), Positives = 36/81 (44%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
KK +DE + +++E+ + + +++ +E+ +K+EE E+ +
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSG 210
Query: 232 KNEEEEEEEEVLIKLEEEEEN 252
+ ++E +E K + E
Sbjct: 211 LSTKDEPPKEKRQKHHDPERR 231
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 30.4 bits (69), Expect = 0.67
Identities = 23/107 (21%), Positives = 42/107 (39%)
Query: 136 KFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKK 195
+ E + + K A EE++ E +E +E E E ++ +
Sbjct: 2 SNIINEDRDDALPFQVIEFKDLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQ 61
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
EE E +E ++ EEG E +EE V+++ E + E+
Sbjct: 62 EGIEEGAREGYEEGFQLGYEEGFEEGQEEGRVLERLAKLIAEFQAEL 108
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 30.7 bits (69), Expect = 0.67
Identities = 18/76 (23%), Positives = 37/76 (48%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + E +DE EEEE+E E+ E + E + +++ +E E++EE++
Sbjct: 105 DGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKM 164
Query: 226 EVVKQKKNEEEEEEEE 241
E + + +E E+
Sbjct: 165 EEEEAGEEKESVEQAT 180
Score = 30.7 bits (69), Expect = 0.74
Identities = 18/81 (22%), Positives = 41/81 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ + ED + + + E+ ++ +EE+E E++ +DE E + E E++
Sbjct: 95 QDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDD 154
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ ++EE++ E EE+E
Sbjct: 155 ETEDDEEKKMEEEEAGEEKES 175
Score = 29.6 bits (66), Expect = 1.9
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
AG++ + E+DE ++E ++E + K ++ EE++E+E+ ++E+E + + + +E +
Sbjct: 269 AGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLE 328
Query: 229 KQKKNEEEEE 238
+E
Sbjct: 329 GVDLESPKEL 338
Score = 29.2 bits (65), Expect = 2.3
Identities = 22/81 (27%), Positives = 49/81 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+ +E + E+ + +E+ K+K ++ E E+++ +++ ++KE EEE+EE +Q
Sbjct: 244 EEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQ 303
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ +++EEE E + + +E
Sbjct: 304 EDDQDEEEPPEAAMDKVKLDE 324
Score = 29.2 bits (65), Expect = 2.5
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
K +D E+ + ++ + + ++EEEEEE + ++ ++ + + E +
Sbjct: 93 KLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLS 152
Query: 235 EEEEEEEVLIKLEEEE 250
++E E++ K+EEEE
Sbjct: 153 DDETEDDEEKKMEEEE 168
Score = 28.4 bits (63), Expect = 3.7
Identities = 16/70 (22%), Positives = 40/70 (57%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
++K++ + ++ E E++ K+ ++E + + ++E++E +++E + +EEE E K
Sbjct: 261 KEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKV 320
Query: 233 NEEEEEEEEV 242
+E E V
Sbjct: 321 KLDEPVLEGV 330
Score = 28.4 bits (63), Expect = 3.9
Identities = 13/71 (18%), Positives = 38/71 (53%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ K EE++ E++E E++++ ++ ++ + ++ + ++ E + E+ K K
Sbjct: 290 DSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKRQAKLK 349
Query: 232 KNEEEEEEEEV 242
+ E+ E+E +
Sbjct: 350 QQIEQLEKENL 360
Score = 28.0 bits (62), Expect = 5.5
Identities = 18/77 (23%), Positives = 45/77 (58%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+E+ +EK ++ + ++ E++E ++ K+E + + E+++E++ E+E+ ++EEE
Sbjct: 254 YEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPP 313
Query: 225 EEVVKQKKNEEEEEEEE 241
E + + K +E E
Sbjct: 314 EAAMDKVKLDEPVLEGV 330
Score = 27.6 bits (61), Expect = 6.8
Identities = 18/86 (20%), Positives = 47/86 (54%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + +E + ++++ E+ E+ + E+ ++EE++EEDE ++E ++E+E +
Sbjct: 80 EFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEAD 139
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + + E+ ++E E++ E
Sbjct: 140 LFNESESSLEDLSDDETEDDEEKKME 165
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 30.8 bits (70), Expect = 0.68
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 49 AGKTVLDVGTGTGKSILLQGH 69
G VL++GTGTG S L H
Sbjct: 107 DGHRVLEIGTGTGYSAALLCH 127
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 30.8 bits (68), Expect = 0.72
Identities = 22/81 (27%), Positives = 50/81 (61%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+ KK E + +++ ++ E +QK N ++ E+E ++ E E +K + EE ++ + ++
Sbjct: 68 EKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQE 127
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ +E+E++E L KL+ E++
Sbjct: 128 RIQKEQEKKEADLKKLQAEKK 148
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 30.8 bits (69), Expect = 0.73
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEE-EEEEEEKKEEDEIEKEEG---ENEEEEEEE 226
E+ + E+ N E+ + EE ++++EE + + E+E E +E E ++
Sbjct: 464 TMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADK 523
Query: 227 VVKQKKNEEEEEEEE 241
V + KN++ + +EE
Sbjct: 524 DVNKSKNKKRKVDEE 538
Score = 28.5 bits (63), Expect = 4.0
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 17/83 (20%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV-------- 227
+ EE + E E+ E EED+ + EE + ++E E E
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSET 518
Query: 228 ---------VKQKKNEEEEEEEE 241
K KK + +EEEEE
Sbjct: 519 SEADKDVNKSKNKKRKVDEEEEE 541
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 30.5 bits (70), Expect = 0.75
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 19/95 (20%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED-------------------EIEKEE 216
E +E E + E EEE ++K+ + EE EEE KE+ + +EE
Sbjct: 109 ESEEYEARKEEIEEEFQEKREEAFEELEEEAKEKGFALVRTPGGFVFAPLKDGEPLTEEE 168
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E EEE E +++K +E EEE +E+L +L E E
Sbjct: 169 FEALPEEEREELEEKIDELEEELQEILRQLRELER 203
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4.
This group consists of Eukaryotic TruB proteins similar
to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4,
makes psi55 in the T loop of both cytoplasmic and
mitochondrial tRNAs. Psi55 is almost universally
conserved. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi).
Length = 312
Score = 30.5 bits (69), Expect = 0.76
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
S + K W + E+E ++ E + + ++ E E E + +E
Sbjct: 175 VSELLVKDWIEPGPLFTRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEEV 234
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
EE K+K EEE E+ L
Sbjct: 235 EATHEES-----KRKSEVEEEANEKSLGP 258
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 29.9 bits (68), Expect = 0.78
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 39/121 (32%)
Query: 50 GKTVLDVGTGTG--KSILLQ------GHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIE 101
GKTVLD+G G +LL+ VD L P + ++ I
Sbjct: 23 GKTVLDLGAAPGGFSQVLLERGGAGKVVAVD----------LGPMEPIQGV-YFLRGDIT 71
Query: 102 NVE--------LPEKVDIIVSEWMGFYLLHESMIDS----------VIFARDKFLKPEGV 143
+ E LP KVD+++S+ + DS ++ A + L+P G
Sbjct: 72 DPETLEKLRELLPGKVDLVLSD-GAPNVSGIENTDSFISLQLVLAALLLALE-VLRPGGN 129
Query: 144 M 144
Sbjct: 130 F 130
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 30.4 bits (69), Expect = 0.79
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
EE K+E + +E + E+++ + +E+EE EEE + E K EG E E+
Sbjct: 77 EEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEK 130
Score = 29.6 bits (67), Expect = 1.4
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ +E E EE EE+ E +++ +E +E E+ EED E E EE +EE + +
Sbjct: 28 KVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEE--LLK 85
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K +E E++ +++E E+E
Sbjct: 86 KTDEASSIIEKLQMQIEREQE 106
Score = 28.4 bits (64), Expect = 3.4
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+ ++ +E +E E EE ++ + E EEE KEE + +E + E+ + +++
Sbjct: 44 EQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIER 103
Query: 231 KKNEEEEEEEEVL 243
++ E EEE E ++
Sbjct: 104 EQEEWEEELERLI 116
Score = 27.7 bits (62), Expect = 5.9
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ ++ + + I+E+E EEE +Q + EE +E K+ +E E++ E E EE
Sbjct: 18 KTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEE 77
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E ++ ++ +E ++ KL+ + E
Sbjct: 78 EAKEELL-KKTDEASSIIEKLQMQIER 103
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 30.1 bits (68), Expect = 0.79
Identities = 25/86 (29%), Positives = 50/86 (58%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E I EKK+ ++E + EE + + + +E++EEEE E D ++ E + +E+++E
Sbjct: 89 EEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDE 148
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
V +++E +E+E+ E+EE+
Sbjct: 149 IVEILIEDDEVDEDEDDDEDEEDEED 174
Score = 27.0 bits (60), Expect = 6.6
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
DEI+EE E+ K +E + EE E++ E+ E EE++E + + + ++E+E
Sbjct: 85 DEIDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDE 144
Query: 238 EEEEVLIKLEEEEE 251
+++E++ L E++E
Sbjct: 145 DDDEIVEILIEDDE 158
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 30.3 bits (69), Expect = 0.80
Identities = 25/61 (40%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE--EEEEEEVLIKLEE 248
V++ + K EEEEEEE E +E E+EE E E++E+ + K E E++ E++L +LE
Sbjct: 13 VEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELEL 72
Query: 249 E 249
E
Sbjct: 73 E 73
Score = 29.9 bits (68), Expect = 1.0
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+K E++IEEEE EE E ++++ +E+EEE++EK + K E++ E+
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 27.2 bits (61), Expect = 9.0
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 200 EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
EEEEEE+ E E E+EE + EE++E+ K E +E+++ LEE E
Sbjct: 21 EEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELE 71
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 30.0 bits (68), Expect = 0.80
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
+ + E+ + E+ K +K +++ +E KK+ED + E E + EE + K
Sbjct: 1 PSSREALLEQRRRKREQRKARK---KQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
Query: 234 EEEEEE 239
E E
Sbjct: 58 ENAEGN 63
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 29.6 bits (67), Expect = 0.82
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
EE+E ++++++E+E + EE ++E+E EEE KK
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 28.1 bits (63), Expect = 3.1
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEV-VKQKK 232
+E+E +++E+ EE+E ++E+ + +E EEEE VK+ K
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.8 bits (70), Expect = 0.82
Identities = 13/45 (28%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
W+ EE ++E+ E+E +E++ +++ K +EE++++E +K E
Sbjct: 545 WKLDDKEELQREK--EEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 30.0 bits (68), Expect = 1.3
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E EE+E +K++K + +++EEKK+ E+EK E
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKK-KELEKLE 587
Score = 29.6 bits (67), Expect = 2.0
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 212 IEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+KEE + E+EE+E + +QK+ + +++EE K E+ E
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 28.5 bits (64), Expect = 3.6
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
++ ++ + ++EE+E ++++ K++ E +++E E++ K K E
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAE 595
Score = 28.5 bits (64), Expect = 4.0
Identities = 11/41 (26%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 186 EEEEEVKQKKNKEEEEEE--EEKKEEDEIEKEEGENEEEEE 224
+++EE++++K ++E +E +K + + EK++ E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 28.5 bits (64), Expect = 4.6
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
I E+ + V + +KEE + E+E+KE + +K + +++EE KK +E E+
Sbjct: 533 IRIEDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEE------KKKKELEKL 586
Query: 240 EEVLIKLEE 248
E+ I E
Sbjct: 587 EKAKIPPAE 595
Score = 28.1 bits (63), Expect = 4.8
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
EE + E E +E E++ K KK +E++++E EK E+ +I E
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAE 595
>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed.
Length = 250
Score = 30.1 bits (69), Expect = 0.82
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 46 NIFAGKTVLDVGTGTGKSIL 65
+ GKTVLDVG G+G IL
Sbjct: 116 LVLPGKTVLDVGCGSG--IL 133
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.5 bits (69), Expect = 0.85
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+++ +EE+ ++E V++ + EE++E+EE ++ D + + +EE+EE K+
Sbjct: 404 QKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPST 463
Query: 236 EEEEEEVL 243
EEE +
Sbjct: 464 ILEEEPTV 471
Score = 29.0 bits (65), Expect = 2.8
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E +++ E+ + EE++E+EE + E + +E++E +KE + EEE
Sbjct: 409 EEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEE 468
Query: 226 EVVKQ 230
V
Sbjct: 469 PTVGG 473
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 0.85
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEE-EEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E+ + ED IE E E+ + + E EE+ E+ EE E E E EE+ E
Sbjct: 501 AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+ EE EE E + +L +
Sbjct: 561 -AEAEEEAEEAREEVAELNSK 580
Score = 28.5 bits (64), Expect = 4.7
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEE--EEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E E E DE E E+ E+ ++ +++ +E EE EE++EE E + E E+ E E
Sbjct: 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE 271
Query: 229 KQKKN--EEEEEEEEVLIKLEEEEE 251
++++ EE + E L +LEEE +
Sbjct: 272 REREELAEEVRDLRERLEELEEERD 296
Score = 27.7 bits (62), Expect = 8.2
Identities = 20/76 (26%), Positives = 33/76 (43%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
I E E E E EE EE +++ +E EEE ++ E ++ + E E E
Sbjct: 258 AEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARRE 317
Query: 226 EVVKQKKNEEEEEEEE 241
E+ + + + EE
Sbjct: 318 ELEDRDEELRDRLEEC 333
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 30.8 bits (70), Expect = 0.87
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE-----KKEEDEIEKEEGENEEEEEEE 226
+K+ EIE EE+E Q + + ++E++ +E IE++ E++ ++ +
Sbjct: 1512 SNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKN 1571
Query: 227 VVKQKKNEEEE 237
+ K N E E
Sbjct: 1572 KKQYKSNTEAE 1582
Score = 30.8 bits (70), Expect = 0.89
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
IF+ W + E K D +EE+ ++ KK ++++EEE +++E+ IE E
Sbjct: 724 IFRNW--NGKDAEFKISDSVEEKTKKK------KKKEKKKEEEYKREEKARIEIAE 771
Score = 30.5 bits (69), Expect = 0.97
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
EN+ + +K++ I E + E +N+ +EE+E + E E +KE+ N E
Sbjct: 1492 LNGNENVNKKINQKKKGFIPSNEKKSIE----IENRNQEEKEPAGQGELESDKEKKGNLE 1547
Query: 222 EEEEEVVKQKKNEEEEEEE 240
+ Q+KN EE+ E
Sbjct: 1548 SV---LSNQEKNIEEDYAE 1563
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 28.9 bits (65), Expect = 0.88
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
K E E+ EE+ EEEE+ + ++ + EEE ++ +E E EE E++E EE K
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKAL 88
Score = 28.1 bits (63), Expect = 1.9
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
+DEI E E+ EE ++ + +E++ EEE +E +E+EE E EE++E + + +K
Sbjct: 29 SVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKAL 88
Query: 235 EEEEEEEVLIKLEEEEE 251
+E+ + +K+ + +E
Sbjct: 89 QEKRKALPALKVRKAKE 105
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 30.6 bits (69), Expect = 0.88
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 175 KEEDEIEEEENEEE------EEVKQKKNKEEEEEEEEK-KEEDEIEKEEGENEEEEEEEV 227
++ +E + E V+Q +E++ K+ IE + EE EV
Sbjct: 480 EKAVIMEADSANRSSAPRKKELVEQWPEYSDEDKIRSLLKKLRAIEALKERMRSGEELEV 539
Query: 228 VKQKKNEEEEEEEEVLIKLEEE 249
++ K E EEE L +L E+
Sbjct: 540 IQVNKIETEEEVLSELKELVED 561
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 30.4 bits (68), Expect = 0.88
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE-EEKKEEDEIEKEEGEN 219
I K E I + E E E+E +E+EE +K +++ EE + EE KE DE +K++ +
Sbjct: 192 IKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKK 251
Query: 220 EEEEEEEVVKQKKNE 234
+E +E Q K++
Sbjct: 252 VKEVTKEYEVQNKHK 266
Score = 28.5 bits (63), Expect = 4.6
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
E+ +K+ +E+EE+ +K +ED E + E +E +E + K KK +E +E EV
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEV 261
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 30.0 bits (68), Expect = 0.88
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
++ K+++E EE +E KK+ ++ E +KK+
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.7 bits (67), Expect = 1.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 209 EDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
+D +KEE EE +E KK+ ++ E
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVETK 193
Score = 29.3 bits (66), Expect = 1.3
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
+D ++EE EE + ++ +K E
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 27.0 bits (60), Expect = 7.5
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 173 EKKEEDEIEE--EENEEEEEVKQKKNKEEEEEEEEKKEE 209
E+K+ + EE E +E K ++ E KK++
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.4 bits (68), Expect = 0.89
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
NI + E++ + EEEE+E+ EE+++ + E EEE + E+ E + E+ + E +E E
Sbjct: 94 NIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENE 153
Query: 227 VVKQKKNEEEEEEEEVL 243
+ + EE +++ +L
Sbjct: 154 LAGEYIIEEVDDDVAIL 170
Score = 29.3 bits (65), Expect = 2.1
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ E E E + EEE +K +EE+E+ EE +E +E+E E E +++E+ E +
Sbjct: 83 DNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDE 142
Query: 231 KKNEEEEEEEEV 242
K+++ E +E E+
Sbjct: 143 KESDAEGDENEL 154
Score = 28.9 bits (64), Expect = 3.0
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 155 PSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
S + + E A ++ + EN+ E E K EEE +K+EE++ +
Sbjct: 56 LSEACDYIAIEEYSACGNVASIANDKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDV 115
Query: 215 EEGENEEEEEEEVVKQKKNEEEEEEEE 241
EE E EE E + +E+ E+++E
Sbjct: 116 EEIEEVEEVEVVEEEYDDDEDSEKDDE 142
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 30.5 bits (69), Expect = 0.95
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 156 SYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK 206
+ E+ F+E +EEK+ E+EE E+ E EE+ EK
Sbjct: 128 DINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEK 178
Score = 29.7 bits (67), Expect = 1.5
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
E K ++E E EE E + E EE+ E
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 27.8 bits (62), Expect = 6.2
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 172 EEKKEEDEIEEEENEEEEEVK----------------QKKNKEEEEEEEEKKEEDEIEKE 215
+E ++ + +EE +E + N+E E K ++E E
Sbjct: 90 KESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELL 149
Query: 216 EGENEEEEEEEVVKQKKNEEEEEEEEV 242
E EE E + + + E EE++
Sbjct: 150 R---EVEELESRLATEPSPAPELEEQL 173
Score = 27.4 bits (61), Expect = 7.5
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 165 WENIAGEEEKKEEDEIEEEENEE-----EEEVKQKKNKEEEEEEEEKKEEDEIE--KEEG 217
W A EE+ +E + N + +E + K K E+E E+K++D+ ++
Sbjct: 23 WLIFAPSEEEDAAEEETKGFNADIPQPKDEGIIGDKMKAYEQEALEQKQKDKKRTLQDLA 82
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEV 242
++ E+ ++E ++ +EE
Sbjct: 83 DSFEKSDKESQDYSSSDSGFDEEPD 107
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 0.96
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
EEE ++KK +EE++ K+E++++E+
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.7 bits (67), Expect = 0.98
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI---------EKEEGENE 220
E++ + EIE+ + + ++E E+ K+ E+ +K E ++
Sbjct: 47 AEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDL 106
Query: 221 EEEEEEVVKQKKNEEEE 237
EEE E +++ K+ E+ +
Sbjct: 107 EEEREGILRSKQAEDGK 123
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 29.2 bits (66), Expect = 1.00
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 171 EEEKKEEDEIEEEENEE---EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E E+ +E+E+ ++ + K K++ +EE+ E + + + ++ + +E++
Sbjct: 83 EYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSDADEDD 141
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 30.3 bits (69), Expect = 1.0
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
K +++ EE+ + EE K+++ +EEEE ++ D IE E G
Sbjct: 318 FLAYLLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELGYGL 370
Score = 28.4 bits (64), Expect = 4.6
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+E++ EE++K +E +KEE E EEE ++V + E E LI L +E++
Sbjct: 327 KEQQAEEKEKPAEEAKKEEEEEEEESVDDV--LLIDPIELELGYGLIPLVDEQQG 379
>gnl|CDD|215319 PLN02585, PLN02585, magnesium protoporphyrin IX methyltransferase.
Length = 315
Score = 30.2 bits (68), Expect = 1.1
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 2 DMEVVKDHDEEEYFESY------TDLEVHKLMLDDTVRN------EAYRAAICDNPNIFA 49
D EVV+++ FE + TD EV+K+ LD +R E + ++ ++ A
Sbjct: 89 DKEVVREYFNTTGFERWRKIYGETD-EVNKVQLD--IRLGHAQTVEKVLLWLAEDGSL-A 144
Query: 50 GKTVLDVGTGTG 61
G TV D G GTG
Sbjct: 145 GVTVCDAGCGTG 156
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 30.3 bits (68), Expect = 1.1
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
Y +IF+ E + +E +E +EE+E+E E+ + +E E E + + D++ +
Sbjct: 324 YYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERL 383
Query: 217 GENE 220
E E
Sbjct: 384 AETE 387
Score = 29.1 bits (65), Expect = 2.1
Identities = 15/65 (23%), Positives = 30/65 (46%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
G+ + + +E E +E + V ++ EE E+E E E E E E E + +
Sbjct: 318 LADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVD 377
Query: 226 EVVKQ 230
++ ++
Sbjct: 378 DLAER 382
Score = 27.2 bits (60), Expect = 9.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
E E++E +E EE E+E E +E V+++ E E +
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 30.1 bits (68), Expect = 1.1
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
++ E+ EE+ ++E++ E E + ++ E EE ++++ ++ K + +
Sbjct: 121 FKRPKYPNEEDEEENVDEDDAEIILE-EVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQA 179
Query: 225 EEVVKQKKNEEE--EEEEEVLIKL 246
++V++ + E E E VL +L
Sbjct: 180 KDVLESLIDAAEWKLEVERVLPQL 203
Score = 29.3 bits (66), Expect = 1.8
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E +EEE V + ++ E ++ E+E+E EE +++E +E K+ + ++
Sbjct: 127 PNEEDEEENVDE-----DDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKD 181
Query: 242 VLIKLEEEEE 251
VL L + E
Sbjct: 182 VLESLIDAAE 191
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.4 bits (69), Expect = 1.1
Identities = 23/81 (28%), Positives = 43/81 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+ KE E++E+ E + + + +E E EK+ E+ G E +E E ++
Sbjct: 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E +++ +E+ +LEE EE
Sbjct: 339 RLEELKKKLKELEKRLEELEE 359
Score = 28.5 bits (64), Expect = 4.7
Identities = 19/71 (26%), Positives = 43/71 (60%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EE+ EE + + +E E+ E +++++ EE + +K+E + ++K E+ E+ +++
Sbjct: 337 EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEEL 396
Query: 232 KNEEEEEEEEV 242
+ +EE EEE+
Sbjct: 397 EKAKEEIEEEI 407
Score = 28.1 bits (63), Expect = 4.8
Identities = 24/82 (29%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE-EGENEEEEEEEVVK 229
E ++ E+ EE E + ++++ + EE+E + +KE E+EK + E+E + +E+ +
Sbjct: 444 ELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
Q K EE+ ++ L +LE++ E
Sbjct: 504 QLKELEEKLKKYNLEELEKKAE 525
Score = 28.1 bits (63), Expect = 5.5
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE E+ I+E E +EE + KK +E E+ E+ EE EE + ++EE E + K+
Sbjct: 321 EEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
E+ E+ L +LE+ +E
Sbjct: 381 LTGLTPEKLEKELEELEKAKE 401
Score = 27.3 bits (61), Expect = 8.8
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
+K +EEE N EE +K+ + KEE EE +KK ++ ++ E E E E K KK
Sbjct: 313 EKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKE 372
Query: 234 EEEEEEEEVLIKLEEEEEN 252
E E ++ + E+ E
Sbjct: 373 ELERLKKRLTGLTPEKLEK 391
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 30.2 bits (68), Expect = 1.2
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E + + + E E K N E ++EE E + + +N+EE E+ + K
Sbjct: 43 NENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEIEKPKDEPK 102
Query: 232 KNEEEEEEEE 241
K +++ + ++
Sbjct: 103 KPDKKPQADQ 112
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 28.8 bits (65), Expect = 1.2
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+E+ K E + EE+++E E+ K + EE+ E E +K E E+E+ E E E +
Sbjct: 16 AIAKEKAKWEKKQEEKKSEAEK--LAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Query: 228 VKQK 231
K+
Sbjct: 74 AKKM 77
Score = 26.5 bits (59), Expect = 8.1
Identities = 16/57 (28%), Positives = 35/57 (61%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
I +E+ + E++ ++KK++ E+ + +E+ E E E+ E E EE E + +++ + E
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 30.1 bits (68), Expect = 1.3
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E D + +E N+ +EV + K +E+ E E E++KE E E E +E
Sbjct: 48 ELDSLRKEFNKLNKEVAKLK-IAKEDATELIAETKELKKEITEKEAEVQE 96
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 29.5 bits (66), Expect = 1.3
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EE++ + +E+ EE EE + E E IE ++G + E V+
Sbjct: 24 EEQRADKSSTFQEDSVEEHTSPSYYLAEELSDSE--TEPSIEDDQGLYTQLPPAEQVEGF 81
Query: 232 KNEEEEE--EEEVLIKLEEE 249
++ ++++ + EE+
Sbjct: 82 IQGPLDDIADDDIDVVFEED 101
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 29.8 bits (67), Expect = 1.4
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ +E+ E E+E++EEDE + ++G ++E+E+E+ V + E V E++EE
Sbjct: 129 TRYREDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEE 186
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
+AG+E K ++EI++ +++++ K+ + E++ EE K E
Sbjct: 58 LAGKELKLTDEEIQKALQAFQKKLQAKQQAKAEKKAEENKAAGE 101
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 28.3 bits (63), Expect = 1.4
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
F +++ E EE E E+ E ++E + + K EE++ + K E +
Sbjct: 46 FKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDG 105
Query: 224 EEE 226
+
Sbjct: 106 AKA 108
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 29.6 bits (67), Expect = 1.4
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
I E E ++ K KEE E+ +K + ++EKE ++ + ++E+V+ +
Sbjct: 313 IVRETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKDEKVLHE 363
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 29.7 bits (67), Expect = 1.4
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
I K + A ++ K + I+E +E + +K++ + +E K + K+ E
Sbjct: 335 ILKIANDWARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQE 394
Query: 221 EEEEEEVVKQ--KKNEEEEEEE 240
E+ + E +K K E +++
Sbjct: 395 EQAKLEFIKLEELKRLENGKQK 416
>gnl|CDD|220184 pfam09332, Mcm10, Mcm10 replication factor. Mcm10 is a eukaryotic
DNA replication factor that regulates the stability and
chromatin association of DNA polymerase alpha.
Length = 346
Score = 29.9 bits (67), Expect = 1.4
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE---NEEEE 223
N + + +E E+ K+ K E+EE K+ +E EE + +
Sbjct: 155 NSIKRKRSESGKRRAIDERVEKNASSAKRQKSPEDEEPAMKKRRYLESEEFQKILAAKSS 214
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
++++ + E +EE L K E+ EE
Sbjct: 215 HTGLLEEAEREAQEEYFNPLEKKEQMEE 242
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 29.2 bits (66), Expect = 1.5
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE--EDEIEKEEGENEEEEEEEVV 228
EE +++ EI E+ +E E++ ++ E EEE E KE E EIE E+ EE EV
Sbjct: 68 EEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVA 127
Query: 229 K 229
+
Sbjct: 128 E 128
>gnl|CDD|233137 TIGR00811, sit, silicon transporter. Marine diatoms such as
Cylindrotheca fusiformis encode at least six silicon
transport protein homologues which exhibit similar size
and topology. One characterized member of the family
(Sit1) functions in the energy-dependent uptake of
either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by
a Na+ symport mechanism. The system is found in marine
diatoms which make their "glass houses" out of silicon
[Transport and binding proteins, Other].
Length = 545
Score = 29.9 bits (67), Expect = 1.5
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 151 LHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEE----EVK--QKKNKEEEEEEE 204
L + ++S + +NI E +EE+ E EVK K N EEEEE
Sbjct: 474 LSALETFSVRRERMLKNIRELREMINNAISDEEKTTFEAALAIEVKALDKLNAEEEEEAT 533
Query: 205 EKKEEDEIEKE 215
KKE + E
Sbjct: 534 NKKEGKDTEAS 544
>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 29.1 bits (65), Expect = 1.5
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 182 EEENEEEEEVKQK----KNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
EE + E+V+++ K E E + ++E +I + E +E E++ Q + E E+
Sbjct: 45 EESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEK 104
Query: 238 EEEEVLIKLEEE 249
+EE + E+E
Sbjct: 105 IKEEARAQAEQE 116
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 29.3 bits (66), Expect = 1.5
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
NI + K+ + +E+E E EE+++ + + E+ +E ++ E + + E EEE E
Sbjct: 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAE- 153
Query: 227 VVKQKKNEEEEEEEEVLIKLEEE 249
++++ E + EE+ KL+ E
Sbjct: 154 -IREEGQELSSKREELKEKLDPE 175
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 29.5 bits (67), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
K + E ++ E+E E EG E EE E+
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPEL 294
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 29.8 bits (67), Expect = 1.5
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 136 KFLKPEG----VMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEV 191
KFL+ +G V++ K + PE + IA EE+ K DE+ + E+ V
Sbjct: 338 KFLQADGGWERVVWMPKELKERVKDAIPE--DLRDKIATEEDAKTTDELRKFLKEKGHPV 395
Query: 192 KQKKNKEEEEEE-EEKKEEDEIEKEEGENEE 221
++ +E +EEE EE++E + E+ E E E
Sbjct: 396 VKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 28.9 bits (65), Expect = 1.5
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 166 ENIAGEEEKKEEDEIEEE--ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
+ IA E + E + + + +K+ K++ +E E K EI +E EE
Sbjct: 29 KKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREE 88
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEE 249
E++ Q + E E E+E+ +L ++
Sbjct: 89 REKIKAQARAEIEAEKEQAREELRKQ 114
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 29.6 bits (67), Expect = 1.6
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 19/81 (23%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W + + ++ +++ KQ++ + +E E++ +EDE + EG E EE
Sbjct: 169 WGLVGVPGHSSDSEK-------KKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEE 221
Query: 225 E------------EVVKQKKN 233
EV + KKN
Sbjct: 222 RQREHPFIVTEPGEVARGKKN 242
>gnl|CDD|221283 pfam11875, DUF3395, Domain of unknown function (DUF3395). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 147 to 176 amino acids in length. This domain is
found associated with pfam00226.
Length = 144
Score = 28.8 bits (65), Expect = 1.6
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 192 KQKKNKEEEEEEEEKKEEDEI--EKEEGENEEEEEEEVVKQKKNEEEE 237
K K++E+E + +K + EI +K+E E+ +VV++K EEE
Sbjct: 2 FNKAQKKKEQERQREKNKTEIAKKKQEAESAVSLMGDVVERKLTREEE 49
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 29.4 bits (67), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE 204
+ G + + E EEEE EEEE ++++ + EE E E
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 28.2 bits (64), Expect = 4.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 205 EKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
E ++ E E E EE EEEE ++++ EE E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 28.2 bits (64), Expect = 4.2
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
+E + E ++++ + EEEEEEE++EE E + E
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.8 bits (63), Expect = 5.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ + + EEEEEE +EE+E E+EE E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.8 bits (63), Expect = 5.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEE 201
E G + E+E EE E EEEEE +++ + E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 27.4 bits (62), Expect = 5.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
D I E E +++ +E EEEEEE++EE+ E E
Sbjct: 219 DAILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 27.1 bits (61), Expect = 10.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
E + ++ +EE EEEEE++EE+E E+ E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 28.5 bits (64), Expect = 1.7
Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEE---EEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
I+ + + + E E E ++E ++I ++ +EE E+ ++ KK E
Sbjct: 41 ASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAE 100
Query: 235 EEEEEEEVLIKLEEEEE 251
E + E +L +++
Sbjct: 101 LESKYEAFAKQLANQKQ 117
>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function
prediction only].
Length = 218
Score = 29.3 bits (66), Expect = 1.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 41 ICDNPNIFAGKTVLDVGTGTG 61
I D+P GK VLD+G G+G
Sbjct: 71 IDDHPETVRGKRVLDLGAGSG 91
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.8 bits (68), Expect = 1.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
EEE +E + +E EE+E+K E+ EI
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEIT 544
Score = 29.4 bits (67), Expect = 1.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
D EE +E+ + EE+E++ +K E I+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITID 546
Score = 29.0 bits (66), Expect = 2.4
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEEN-----EEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
E WE++ ++ + E + EEE+ K + E +E +E+++
Sbjct: 479 EEELTSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKP 538
Query: 214 KEE 216
++
Sbjct: 539 EKP 541
Score = 27.8 bits (63), Expect = 6.7
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE 203
+ ++E I+E+ + ++K K+ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 29.4 bits (66), Expect = 1.7
Identities = 20/79 (25%), Positives = 36/79 (45%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
+ E E++ E E K+ +E +++ + + IEK+ N+ EE + +KK
Sbjct: 103 EALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKL 162
Query: 234 EEEEEEEEVLIKLEEEEEN 252
EE E E + + E N
Sbjct: 163 EESLELEREKFEEQLHEAN 181
Score = 28.2 bits (63), Expect = 4.1
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E+ K+ + ++E + E ++ ++++E E +KE DE+ KE + + E
Sbjct: 81 KNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEI 140
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEE 250
+ K+++N + EE + + + EE
Sbjct: 141 IEKKRENNKNEERLKFENEKKLEE 164
Score = 28.2 bits (63), Expect = 4.8
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E K+ + +++ E++ + KN+E + E EKK E+ +E E + EE+ E +
Sbjct: 125 ELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDL 184
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E EE+ E L++ +
Sbjct: 185 EFKENEEQRESKWAILKKLKR 205
Score = 27.9 bits (62), Expect = 6.2
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEE--EEEVKQKKNK-EEEEEEEEKKEEDEIEKEE 216
EI K EK +E E+ E+E +E +E KQ +N E E++ E + +E K E
Sbjct: 98 EIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFE 157
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + EE E+ ++K E+ E L E EE+
Sbjct: 158 NEKKLEESLELEREKFEEQLHEANLDLEFKENEEQ 192
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 28.0 bits (63), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
++ +EE+EEE E K+K +E+ + E EE+E EK+ E
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 27.6 bits (62), Expect = 2.6
Identities = 17/40 (42%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEE--EEEEVVKQKKNEE 235
+EE+EEE++ + ++E+E+ +N E EEEE KQ+ EE
Sbjct: 69 GDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 29.5 bits (66), Expect = 1.7
Identities = 7/64 (10%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
++ +N++ + + E++++E + +EE+ +D+ ++ +
Sbjct: 251 RYKQNLSSNKYGDFKGVNYGYESDDDEG------SSSNDYDEEEDGDDDDNEDNDDTNTN 304
Query: 223 EEEE 226
+E
Sbjct: 305 HGDE 308
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 28.8 bits (65), Expect = 1.7
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIE 213
E+EE + +K E+E E+ KKEE+ E
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELRE 108
Score = 27.2 bits (61), Expect = 4.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 212 IEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EKEE E + E+E ++Q K EEE E +
Sbjct: 81 NEKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 26.5 bits (59), Expect = 8.3
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 8/46 (17%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE 205
E+ FW+ K E++E E + E+E ++Q K KEEE E +
Sbjct: 73 EMLLFWK-------KNEKEERELRKRAEKEALEQAK-KEEELREAK 110
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 29.7 bits (67), Expect = 1.8
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 8/86 (9%)
Query: 171 EEEKKEEDEIEEEENEEEEEV--------KQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
E EIE E E +E+ + + E EE + E E + +
Sbjct: 202 ELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLF 261
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEE 248
EE E ++++ E E + +L E
Sbjct: 262 EEREQLERQLKEIEAARKANRAQLRE 287
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 28.4 bits (63), Expect = 1.9
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A + E E E + E E + + ++E E +E +E +E +
Sbjct: 58 AEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAE 117
Query: 229 KQKKNEEEEEEEE 241
++ +EEE+EE E
Sbjct: 118 AEEADEEEDEEAE 130
Score = 26.5 bits (58), Expect = 7.9
Identities = 17/74 (22%), Positives = 31/74 (41%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
+ E+ + EE E + ++ DE + + +E +EEEE + +E
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADE 113
Query: 238 EEEEVLIKLEEEEE 251
+ E EEE+E
Sbjct: 114 ADAEAEEADEEEDE 127
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 29.4 bits (66), Expect = 2.0
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 1/72 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E KK + E ++E+ QK+ E E E ++E + K
Sbjct: 329 NAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQE-RAAAMARARARRAAVKAKK 387
Query: 230 QKKNEEEEEEEE 241
+ + E+
Sbjct: 388 KGLIDASPNEDT 399
Score = 27.1 bits (60), Expect = 9.6
Identities = 9/52 (17%), Positives = 20/52 (38%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E+ + + ++ EK E +KE + E E+ ++ + E
Sbjct: 324 ELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMAR 375
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 29.6 bits (67), Expect = 2.0
Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 170 GEEEKKEEDEIEEEE---NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
GEE + E +IEE + + EE+++Q + + E++EEE +K +++ + + ++ +
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Query: 227 VVK 229
+
Sbjct: 147 NLS 149
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 28.5 bits (64), Expect = 2.0
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
+EE +E E +EEEE + EEEE+ EE+ EE+E E + G EEEEE+ +
Sbjct: 66 REEARLELLEQQEEEESAE----EEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELP 121
Query: 235 EEEEEEE 241
EE EE
Sbjct: 122 TPEEREE 128
Score = 27.8 bits (62), Expect = 3.7
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE++ + ++ ++EE E +++E+E EE E + EEE E ++
Sbjct: 40 EEEREARGRAKRWSEGLSGVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEE 99
Query: 231 KKNEEEEEEEE 241
+ EEE
Sbjct: 100 EYQRGPFGEEE 110
Score = 27.8 bits (62), Expect = 4.7
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE +EE+E EEENEEEEE Q+ EEEEE+ ++ EE E EE + Q
Sbjct: 80 EESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQ 139
Query: 231 K 231
+
Sbjct: 140 R 140
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 29.1 bits (65), Expect = 2.1
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 154 APSYSPEIFKFWENI----AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
AP +PE K + A E E E+ EE +K+ + EE E + +E
Sbjct: 200 APDMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDE 259
Query: 210 DEIEKEEGENEEEEEEE 226
DE GE+ E+ E +
Sbjct: 260 DE----HGEDSEDGETK 272
Score = 27.9 bits (62), Expect = 5.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+++EE + + E E E + + E+E EE V + +E+E E+
Sbjct: 211 DQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGED 265
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 28.6 bits (64), Expect = 2.1
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
+EE E ++ +EE +E K+ K +EE++E++ +++EKE
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 34/60 (56%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
D+ E+E EE E+ +K EE+EE ++ + + + ++ E E++K+ K +E+E
Sbjct: 58 DDYREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKE 117
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 29.1 bits (66), Expect = 2.2
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 13/99 (13%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE----- 220
E + EE +E E+ + E + E E+EK E E +
Sbjct: 777 EELEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAELARLEKELEKLEKEIDRIEKK 836
Query: 221 -------EEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ EEVV+++K + E + + L KLEE
Sbjct: 837 LSNEGFVAKAPEEVVEKEKEKLAEYQVK-LAKLEERLAV 874
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 204 EEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
E +E E+EE E EEEEE +VV +K +
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKAS 261
Score = 29.1 bits (65), Expect = 2.3
Identities = 14/22 (63%), Positives = 17/22 (77%)
Query: 170 GEEEKKEEDEIEEEENEEEEEV 191
G + + EEDE EEEE EEEEE+
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEI 244
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 28.9 bits (65), Expect = 2.3
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 207 KEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
++ +E E++E E E E EE EE V
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWV 240
Score = 28.9 bits (65), Expect = 2.3
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
++ +E EE+E E + E EE +E E EN
Sbjct: 205 RDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNEWEN 249
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 29.1 bits (65), Expect = 2.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+IA + ++E+E E E + + + N EEEEE + E+ + G E
Sbjct: 486 MDIASDSPDEDEEEFESEVDSIRKIPDKYVNIIVEEEEENETEKTVNLRFPGWKER 541
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 28.3 bits (63), Expect = 2.4
Identities = 21/68 (30%), Positives = 46/68 (67%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+++ EEEE E+EEE+++ ++ E+EEE E +EE+E ++E+ + ++ E++ + N +
Sbjct: 48 QEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
Query: 237 EEEEEVLI 244
++ + LI
Sbjct: 108 DDNAQNLI 115
Score = 28.3 bits (63), Expect = 2.8
Identities = 27/69 (39%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
++E+ +E K K+E++EEEE+++E+EIE+ E + E+EEE+V+ ++ EEE+EE+
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPE---DIEDEEEIVEDEEEEEEDEEDN 88
Query: 242 VLIKLEEEE 250
V +K E++
Sbjct: 89 VDLKDIEKK 97
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 29.5 bits (66), Expect = 2.4
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 13/83 (15%)
Query: 171 EEEKKEEDE----------IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
++E +EED +EE + E + ++ + + E+ + D+I +E
Sbjct: 142 DKEAREEDADDLRDELAADLEELDAERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTA 201
Query: 221 EEEEEEVVKQKKNEEEEEEEEVL 243
EE EV EE E + L
Sbjct: 202 EEVRAEVADI---YEEYNERKAL 221
>gnl|CDD|216289 pfam01080, Presenilin, Presenilin. Mutations in presenilin-1 are a
major cause of early onset Alzheimer's disease. It has
been found that presenilin-1 binds to beta-catenin
in-vivo. This family also contains SPE proteins from
C.elegans.
Length = 403
Score = 29.0 bits (65), Expect = 2.5
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 33/139 (23%)
Query: 138 LKPEGVMYPYKCILHSAPSYSPEIF---------KFWENIAGEEEKKEEDEIEE----EE 184
L P+G P + ++ +A + IF + +EE E +
Sbjct: 193 LTPKG---PLRMLVETAQERNEPIFPALIYSSTVVVLTVGSNQEETNEGTPSTIRRTSKS 249
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE--------EEEVVKQ------ 230
E EK E+ +E ++ E E EE +
Sbjct: 250 TRSAANPDSAPTSHSTLELPEKSSTPELSDDESDSSETESQSDSSLAPEEDAAEQPEVQS 309
Query: 231 ---KKNEEEEEEEEVLIKL 246
NE+ EEEEE +KL
Sbjct: 310 NSLPSNEKREEEEERGVKL 328
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 29.1 bits (66), Expect = 2.5
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKN-------KEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E K+E E+EEE E EEE+++ K K + EK+E+ E E E EE
Sbjct: 331 ELKEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEEL 390
Query: 225 EEVVKQKKNEEEE 237
EE+ ++ K +EE
Sbjct: 391 EELEEELKELKEE 403
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 28.0 bits (63), Expect = 2.5
Identities = 16/69 (23%), Positives = 33/69 (47%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
G + EEDE + + + E K ++E+EE + + I++ E ++ E+ K
Sbjct: 28 GVDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQKEK 87
Query: 230 QKKNEEEEE 238
++ + EE
Sbjct: 88 EEIEKYREE 96
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 28.9 bits (65), Expect = 2.6
Identities = 16/78 (20%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
+KE E++E ++E+++ + E+ +E ++E+ + +E E EE N
Sbjct: 127 RKEPWTGEDQEADDEDDIIY-----DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGAN 181
Query: 234 EEEEEEEEVLIKLEEEEE 251
+E E+ + +E +
Sbjct: 182 LAVDEPEQSTMSRPQEVK 199
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 29.0 bits (66), Expect = 2.6
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
+ + +EE +E EE+++Q + K + E E +K E E+E+ + E E
Sbjct: 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELE 46
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 29.1 bits (65), Expect = 2.7
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 5/80 (6%)
Query: 178 DEIEEEENEEEEEVKQ--KKNKEEEEEEEEKKEEDEIEKEEGEN---EEEEEEEVVKQKK 232
E+ + + E+E+ +K+ K+ +EE +K E+ ++K+ GE E+ ++ ++K
Sbjct: 426 QEMVQRQQEQEQALKESIKQIQEERAISNFQKREEYLKKKYGEYYLSREQYQKLTPEEKI 485
Query: 233 NEEEEEEEEVLIKLEEEEEN 252
N + + LIKL++E+EN
Sbjct: 486 NIRINQRKIDLIKLDDEQEN 505
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 27.9 bits (62), Expect = 2.7
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 170 GEEEKKEEDEIEEEENE-----EEEEVKQKKNKEEEEEEEE 205
G ++E+E EEEENE +E +V+Q + E E E
Sbjct: 90 GTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGE 130
Score = 27.9 bits (62), Expect = 3.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+EEE EEEE KQ+++ E + ++ ++ E EN EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE------HPAENGEE 131
Score = 26.3 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 204 EEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
++E+E E+EE E +++ +E V+Q + E E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAE 127
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 29.0 bits (65), Expect = 2.8
Identities = 11/64 (17%), Positives = 28/64 (43%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
+ + +E+ + ++ +E+ +++E + E E E E + K EEE
Sbjct: 416 KKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKNETKDTAMEEE 475
Query: 237 EEEE 240
+++
Sbjct: 476 PQDK 479
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 35 EAYRAAICDNPNIFAGKTVLDVGTGTG 61
YRA + + G VLDVG G G
Sbjct: 5 RRYRARTFELLAVQPGDRVLDVGCGPG 31
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 28.7 bits (64), Expect = 2.9
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEE----------EEEEKKEEDEIEKEEGENEEE 222
E +EEDE EEE EE EE ++ ++++ E ++ +E E E + + EE
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEE 65
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E + +++K E + EE + K E ++
Sbjct: 66 EAKRKAEERKRETLKIVEEEVKKELELKKR 95
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 29.1 bits (65), Expect = 2.9
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 22/115 (19%)
Query: 132 FARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEV 191
F ++ L+ E YP +E +G+ +K + +
Sbjct: 754 FCFNEDLEEEEFEYPRM----------------YEEASGKSVRKVNTAVLSTTIKAAARA 797
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGEN------EEEEEEEVVKQKKNEEEEEEE 240
KQK ++ ++E K E +E E E+ + + K ++ + +
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVD 852
Score = 28.0 bits (62), Expect = 5.7
Identities = 10/58 (17%), Positives = 28/58 (48%)
Query: 193 QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+ + +++ +E+ + EI+ E E E E +KQ++ + + + +K ++
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPY 849
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 28.4 bits (63), Expect = 2.9
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
KK + + E+ + E++ +++++ EE+E EE + +E G+ E
Sbjct: 92 KKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQRNEESGDAE 138
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 28.8 bits (65), Expect = 3.0
Identities = 21/104 (20%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 161 IFKFWENIAGEEEKKEEDEIE---EEENEEEEEVKQKKNKE------------EEEEEEE 205
+ +F + + G++ +++ EI+ E+ E E++ N E +E +
Sbjct: 1 MNEFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVADI 60
Query: 206 KKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
+ +E++ E E+ + +E E + + ++ E+E E+L K+ +E
Sbjct: 61 DAKIEELKAEAIESLDIDEREDIYAQIDKLEKEAYEILEKVLDE 104
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 28.4 bits (64), Expect = 3.1
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 26/81 (32%)
Query: 50 GKTVLDVGTGTGK-SI--LLQGH----GVDHHSF----------CTKVHPLDHYAPQYLI 92
GKTVLDVG G+G +I G GVD V L A +L+
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQ-AKGFLL 221
Query: 93 LEVIQNKIENVELPEKVDIIV 113
LEV +N D+IV
Sbjct: 222 LEVPEN--------GPFDVIV 234
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 28.8 bits (65), Expect = 3.1
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEE-EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E +E N+ E+ ++K + ++ EE++ E E + + E + EE
Sbjct: 8 EILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREE 64
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 27.8 bits (62), Expect = 3.1
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 173 EKKEEDE-----IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
K + + E E ++ ++ EE +K +++
Sbjct: 104 RKNDAHTHASILLSSNEQNSTEALQL--RAKKREEHRKKWYQND 145
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 28.2 bits (63), Expect = 3.1
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
KK + + +E+E E ++ + EE EE ++K + + + + E E+
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 27.5 bits (61), Expect = 5.6
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 171 EEEKKEEDEIEEEENEE-------EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
E K D+I E+ E +++ +K K ++ +++KKE++E+ + E +
Sbjct: 29 ESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDS 88
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
EE KK + E + + E+
Sbjct: 89 EENEENDKKVDYELPKVQNTAAEVNHED 116
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 28.5 bits (64), Expect = 3.1
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 189 EEVKQKKNK---EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
++ K+KK+K +++EEE++ E ++ +K E+ E +E V KK
Sbjct: 2 KKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKK 49
Score = 27.7 bits (62), Expect = 5.2
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE-----------------DEIEKEEGE 218
+D+ EE+E+E E+E K K E +E + EKE
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIK 245
EE EE + KQ E +EEE+ I
Sbjct: 74 REELREEFLKKQ----EAVKEEEIEIT 96
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 28.5 bits (64), Expect = 3.1
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 202 EEEEKKEEDEI-EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ EKK E+ + + + E E+E ++K E +++ E +L K +EE +
Sbjct: 35 DAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQA 86
Score = 27.7 bits (62), Expect = 5.0
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 171 EEEKKEEDEIEEEEN-----EEEEEVKQKKNKEEEEEEEEK----KEEDEIEKEEGENEE 221
EKK E+ + + E+E ++KN+E +++ E KEE + E++ +E
Sbjct: 36 AREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEA 95
Query: 222 EEEEEVVKQKKNEEEEEEEEVL 243
EE + +++K E E+ L
Sbjct: 96 REEADEIREKWQEALRREQAAL 117
>gnl|CDD|180745 PRK06915, PRK06915, acetylornithine deacetylase; Validated.
Length = 422
Score = 28.5 bits (64), Expect = 3.2
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 38 RAAICDNPNIFAGKTVLDVGTGTGKSILLQGH 69
R + D+PNI A G+G GKS++L GH
Sbjct: 74 RTSFSDSPNIVATLK----GSGGGKSMILNGH 101
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 28.1 bits (62), Expect = 3.2
Identities = 24/81 (29%), Positives = 48/81 (59%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+++ E +E++ EE +++ ++EEE EK+E+ + + EE E +E+EE+E +++
Sbjct: 51 EQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQK 110
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+K E E E ++ E E
Sbjct: 111 QKEEAEARAREEAERMRLERE 131
Score = 26.6 bits (58), Expect = 9.6
Identities = 25/78 (32%), Positives = 51/78 (65%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E++E++E E E EE++ +++++ K EE ++EE+ +EE E+EE+ K ++
Sbjct: 37 EQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEE 96
Query: 233 NEEEEEEEEVLIKLEEEE 250
E++E+EE+ I+ ++EE
Sbjct: 97 EEKQEQEEQERIQKQKEE 114
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 27.3 bits (61), Expect = 3.2
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 21/104 (20%)
Query: 53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHPLD-----------HYAPQYLILEVIQNKIE 101
+LD+G GTG+ + V +D + + +
Sbjct: 1 ILDLGCGTGRVLRALARAGPSS-----VTGVDISKEALELAKERLRDKGPKVRFVVADAR 55
Query: 102 NVELPE-KVDIIVSEWMGFYLLHESMIDSVI--FARDKFLKPEG 142
++ E D+++ + L + +++ AR L+P G
Sbjct: 56 DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAAR--LLRPGG 97
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 28.8 bits (64), Expect = 3.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EE++ K + +E E EE ++ EE EE ++E K
Sbjct: 416 EEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSK 461
Score = 28.1 bits (62), Expect = 5.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
A EE+K+ ++++ E EE ++ K EE + EE + E
Sbjct: 412 ADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKE 456
Score = 27.7 bits (61), Expect = 8.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 200 EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EEE++ KK +D E E E E + + ++ E EE ++E
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKE 456
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 28.7 bits (65), Expect = 3.3
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
EI E EEV N EE+ E+ EE E E E E++EE++ + N E+
Sbjct: 45 KEIIPIVKEVVEEV----NSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKG 100
Query: 238 E 238
+
Sbjct: 101 K 101
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 28.6 bits (64), Expect = 3.3
Identities = 21/82 (25%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
P K WE++ + +++ +E+ E++E ++KK K+E + +++ E + +
Sbjct: 265 PPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQ--K 322
Query: 219 NEEEEEEEVVKQKKNEEEEEEE 240
+EE +E++ K +K E+E E+E
Sbjct: 323 LQEERKEQLAKLRKEEKEREKE 344
Score = 27.4 bits (61), Expect = 6.8
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 159 PEIFKFWE--NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
PE F F E + +E+ EEN + K + ++ E + + EKE
Sbjct: 228 PEPFNFQESHKSSSRTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLRTERKEKEA 287
Query: 217 GENEEEEEEEVVKQKKNE 234
E +E++E E K+KK E
Sbjct: 288 KEQQEKKELEQRKKKKKE 305
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 28.3 bits (64), Expect = 3.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
E E ++KK +EE++ K+E+D++E+
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 28.5 bits (63), Expect = 3.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 200 EEEEEEKKEEDEIEKEEGENEEEEEEE 226
EE EEE + + + E E +EEEE E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIE 110
Score = 28.5 bits (63), Expect = 3.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
AGEE ++E+++ E + E EEE EEEE E E + ++ E
Sbjct: 82 AGEEAEEEDNDRECPDTEAEEE------DEEEEIEAPDPEVNPLDAE 122
>gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional.
Length = 325
Score = 28.6 bits (64), Expect = 3.4
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK----LEEEEE 251
+ +E EEK +D+++K E+ EV+ + +EE++E ++ +I ++EE +
Sbjct: 11 KEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDDEMKKEIISEVKNIKEEID 70
Query: 252 N 252
Sbjct: 71 R 71
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 27.6 bits (62), Expect = 3.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
+ +EE+ +EEE K++ + +E E E+KK
Sbjct: 95 AQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 28.7 bits (65), Expect = 3.6
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKN----KEEEEEEEEKKEEDEIEKEE 216
+ F I E+ +++ + EN + + + E+E ++ ++ + + EE
Sbjct: 472 VLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKNEE 531
Query: 217 GENEEEEEEEVVKQKKN 233
E EEEEE ++ + K
Sbjct: 532 EEEEEEEELPLIPEAKE 548
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 27.9 bits (62), Expect = 3.6
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
EK+ ++ + E+ + K+KK E++E +++K E ++ +E E+ E+ K+K+
Sbjct: 51 EKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQ 110
Query: 233 NEEE 236
E E
Sbjct: 111 KERE 114
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 28.0 bits (63), Expect = 3.6
Identities = 13/81 (16%), Positives = 52/81 (64%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A ++ +KE +++ E ++E+E+++++ K +++ +E + +++E + +++E ++
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+ + E +++++E+L + ++
Sbjct: 96 QAAQQELQQKQQELLQPIYDK 116
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 28.3 bits (63), Expect = 3.7
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E E+ E +++ +E ++ + + E E E EE+ E+ E E E E E+E
Sbjct: 182 EHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKAL 241
Query: 231 KKNEEEEEEEEVLI----KLEEEEE 251
+ E+ ++E+ L K EEEE
Sbjct: 242 DEQTEDPQQEDALAGDAKKALEEEE 266
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 28.4 bits (63), Expect = 3.8
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ E E+ + E+++ + K + + K+E D +K E E
Sbjct: 203 KASEVEHLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELD-AKKAELSKALAALE 261
Query: 226 EVVKQKKNEEEEEEE 240
++ ++ +
Sbjct: 262 AANAADEDPQDRDAA 276
Score = 27.6 bits (61), Expect = 7.5
Identities = 13/72 (18%), Positives = 25/72 (34%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
E + +E E K E+ + EK K + +EE K+ + +
Sbjct: 200 EETKASEVEHLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKAELSKALAA 259
Query: 240 EEVLIKLEEEEE 251
E +E+ +
Sbjct: 260 LEAANAADEDPQ 271
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 27.9 bits (62), Expect = 4.0
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
AG+ ++ ++++E + E +K KE + + +I+ E ++E EE +
Sbjct: 88 AGQLVRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKL 147
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
K + + E EEV+ KLE E+
Sbjct: 148 KGEV-IKGEPLEEVIDKLEYPVES 170
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 28.0 bits (62), Expect = 4.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+E+KK+E E + E+ ++ + K + E E E+ ED GE E E
Sbjct: 94 KKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVE 146
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 28.4 bits (64), Expect = 4.1
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE-KEEGENEEEEEEEVVKQKK 232
K++ I EEE+++ + E EE+KK ++EIE + ++ + E+ +K+
Sbjct: 486 KEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAG 545
Query: 233 NE-EEEEEEEVLIKLEEEEE 251
++ EE+E++ + E +E
Sbjct: 546 DKLPAEEKEKIEKAVAELKE 565
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 27.5 bits (62), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEK 206
++EIE E N EEE+++K + E+E E
Sbjct: 87 DEEIELELNLTEEELEEKYKGKLEKEYEGP 116
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 28.5 bits (64), Expect = 4.2
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEE---------EEEKKEEDEIEKEEGENEEEEEEE 226
+DE+E E E+ + K K E+ + + +K+ E++ + E ++E+ E
Sbjct: 503 PKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIEN 562
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
++K+ + + + E + L EE +
Sbjct: 563 LIKKLRQALQNDNYESIKSLLEELQK 588
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 28.5 bits (63), Expect = 4.2
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E+ IE E EE E +++++ E E E+ E + +E+E E + E + + + ++
Sbjct: 456 EKKRIERLEREERERLERER---MERIERERLERERLERERLERDRLERDRLDRLERERV 512
Query: 236 EEEEEEVLIK 245
+ E + L K
Sbjct: 513 DRLERDRLEK 522
Score = 28.2 bits (62), Expect = 5.3
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E+ E +E E E E E +++++ E E E E+ E D +E++ + E E + +++ +
Sbjct: 461 ERLEREERERLERERMERIERER-LERERLERERLERDRLERDRLDRLERERVDRLERDR 519
Query: 233 NEEEEEEEEVLIKLE 247
E+ L +E
Sbjct: 520 LEKARRNSYFLKGME 534
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 28.5 bits (63), Expect = 4.2
Identities = 16/81 (19%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKN------KEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+E K + + E+ ++E +E Q++ + E++ + E++E EE+EE
Sbjct: 724 DEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEE 783
Query: 225 EEVVKQKKNEEEEEEEEVLIK 245
EE + ++++ + ++K
Sbjct: 784 EENKEVSAKRAKKKQRKNMLK 804
Score = 27.3 bits (60), Expect = 9.3
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E +E D+ E + ++ N + E E+ E E EKEE EN+E +
Sbjct: 736 AKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAK 795
Query: 229 KQKK 232
K+++
Sbjct: 796 KKQR 799
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.5 bits (64), Expect = 4.2
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+EK E++ EE + E K +E E++ ++ G ++E+E +
Sbjct: 321 DEKDLEEKPEEPGPDPE--------KPDEGEDDAEQSGPRGHPTPGNDDEKEPDP 367
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 28.1 bits (63), Expect = 4.3
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 171 EEEKKEEDEIEE---EENEEEEEVKQKKNKEEEEEEEEKKE--EDEIEKEEGENEEEEEE 225
+E KK EIEE + NE +++ + K +++++ EE KKE E + E E + E
Sbjct: 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96
Query: 226 EVVKQK 231
++ K
Sbjct: 97 AELQDK 102
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain is
found associated with pfam06512, pfam00520. This domain
has a conserved ADD sequence motif.
Length = 222
Score = 27.8 bits (62), Expect = 4.3
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVK 192
S E K N ++ KKEE I EE + E+E K
Sbjct: 7 SSESAKERRNRN-DKNKKEEHSIGSEEGDSEKEPK 40
Score = 27.1 bits (60), Expect = 9.0
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+E K KEE E+ + ++ K E +
Sbjct: 12 KERRNRNDKNKKEEHSIGSEEGDSEKEPKSESAD 45
>gnl|CDD|193515 cd03895, M20_ArgE_DapE_like2, M20 Peptidases with similarity to
acetylornithine deacetylases and
succinyl-diaminopimelate desuccinylases. Peptidase M20
family, Uncharacterized protein subfamily with
similarity to acetylornithine
deacetylase/succinyl-diaminopimelate desuccinylase
(ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze
analogous reactions and share a common activator, the
metal ion (usually Co2+ or Zn2+). ArgE catalyzes a
broad range of substrates, including N-acetylornithine,
alpha-N-acetylmethionine and alpha-N-formylmethionine,
while DapE catalyzes the hydrolysis of
N-succinyl-L,L-diaminopimelate (L,L-SDAP) to
L,L-diaminopimelate and succinate. Proteins in this
subfamily are mostly bacterial, and have been inferred
by homology as being related to both ArgE and DapE.
Length = 399
Score = 28.3 bits (64), Expect = 4.5
Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
Query: 57 GTGTGKSILLQGHGVD 72
G G G+S++L GH +D
Sbjct: 69 GGGGGRSLILNGH-ID 83
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.9 bits (62), Expect = 4.5
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE--EDEIEKE-EGENEEEEEEEVVK 229
EK EE E EE E ++N+E+++E+E +++ E EI K + + K
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQK 144
Query: 230 QKKNEEEEEEEEVLIKLEEE 249
+K+ ++ +E +L E
Sbjct: 145 RKREQKARAAKERKERLVAE 164
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.6 bits (64), Expect = 4.5
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEE---EEEEKKEEDEIEKEE 216
E K E EE +KE + IE E E+ + +Q +++E EEE+K E E
Sbjct: 2564 EKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNRE 2623
Query: 217 GENEEEEEEE 226
++ +
Sbjct: 2624 VSGTDDTNKN 2633
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 27.1 bits (60), Expect = 4.6
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEE-EEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EK++ D++ +E+ EEEE + + E E + +K E+ E+EK + + E+E+ E +K K
Sbjct: 58 EKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQEQIPEFLKVK 117
Query: 232 KN 233
N
Sbjct: 118 AN 119
>gnl|CDD|233941 TIGR02585, cas_Cst2_DevR, CRISPR-associated protein Cas7/Cst2/DevR,
subtype I-B/TNEAP. CRISPR is a term for Clustered
Regularly Interspaced Short Palidromic Repeats. A number
of protein families appear only in association with
these repeats and are designated Cas (CRISPR associated)
proteins. This clade is a member of the DevR family
(TIGR01875) and includes the DevR protein of Myxococcus
xanthus, a protein whose expression appears to be
regulated through a number of means, including both
location and autorepression; DevR mutants are incapable
of fruiting body development [Mobile and
extrachromosomal element functions, Other].
Length = 310
Score = 28.2 bits (63), Expect = 4.7
Identities = 16/78 (20%), Positives = 30/78 (38%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
K E+E E E + E+ ++ E+ E++ ++ ENEEE E
Sbjct: 232 LNVLKVEEEYLEGEVIIDVELIVTALEDFSEKVEDEVHIGLLKGFFEENEEEAIELKPDG 291
Query: 231 KKNEEEEEEEEVLIKLEE 248
++V +E+
Sbjct: 292 GVESIIVIFDKVKKAVEK 309
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 27.2 bits (61), Expect = 4.7
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
E+E+E +E+ + +EE ++++E + + + + + E E
Sbjct: 6 EVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 27.9 bits (63), Expect = 4.7
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 200 EEEEEEKKEEDEIEK------EEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
+EEEEE +++D I + +G +EE+EE + ++ + E E E L
Sbjct: 263 KEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEAL 312
>gnl|CDD|224037 COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase
subunits [DNA replication, recombination, and repair].
Length = 767
Score = 28.4 bits (63), Expect = 4.7
Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
E +E + K K E E+E E K +E EI+K + ++
Sbjct: 80 DGTLNRELKELIDSLSKKLGKLVEIEQEAEIKTKELEIKKLRLAKRSFKGRAILGLLAKV 139
Query: 235 EEEEEE-EVLIKLEEEEEN 252
E E L+K E
Sbjct: 140 LGENLGSEALVKYGRLESY 158
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 27.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
+ K K K+E +E++EK EE EI+ E+ E ++
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQ 180
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 27.4 bits (61), Expect = 4.8
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E KEE E EEE E + E + K+ E + ++ ++ ++E + K
Sbjct: 68 ERELKEEAEAEEE--GEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKD 125
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ ++ ++ L+ EE
Sbjct: 126 PRGGTQDVVDKSQASLDYGEEE 147
>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 28.1 bits (62), Expect = 4.8
Identities = 17/88 (19%), Positives = 30/88 (34%)
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
A KF E E + + N ++ +KK + ++ E+ +
Sbjct: 254 KAKLEKRRHVKFLEGSNTHEMDQLLKHFLDNSNFRQDRRSRKKKASASRDISDQNAEEIL 313
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ G +E V + KN E EE
Sbjct: 314 MIKNGHIVVDEANMYVDRHKNASIEVEE 341
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 28.1 bits (62), Expect = 4.9
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEV 242
+ EEE+ KN ++ EEE+ E DE +E E+++E E++ + E+ + +EE+
Sbjct: 224 EKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEI 281
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 28.0 bits (62), Expect = 5.0
Identities = 18/67 (26%), Positives = 28/67 (41%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
KE I + +E+E + +K + ++ DE E EEEV+K +NE
Sbjct: 451 KESVFIYPKSFKEKELLTEKGGAQFSSANSLERGADEDYLIVNGTNEPYEEEVIKTNENE 510
Query: 235 EEEEEEE 241
E E
Sbjct: 511 NFPLENE 517
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 28.4 bits (63), Expect = 5.0
Identities = 8/85 (9%), Positives = 30/85 (35%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ E+ E + + E++++ + ++ +E + + + +E
Sbjct: 602 KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR 661
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
E + +E + L++ +
Sbjct: 662 EHALSIRVLPKELLASRQLALQKMQ 686
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 28.1 bits (63), Expect = 5.0
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E+EE+ +EE E+ QK++ E +E+ EK +D + +E +++ + EE
Sbjct: 460 ELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.1 bits (63), Expect = 5.2
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
++ IE E E+++QKK K E E + + + E EE K+++ ++
Sbjct: 836 KELIERIIKEWIEDLRQKK-KLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQF 894
Query: 237 EEEEEV 242
EEE +
Sbjct: 895 AEEEGL 900
>gnl|CDD|153125 cd02434, Nodulin-21_like_3, Nodulin-21 and CCC1-related protein
family. Nodulin-21_like_3: This is a family of proteins
closely related to nodulin-21, a plant nodule-specific
protein that may be involved in symbiotic nitrogen
fixation. This family is also related to CCC1, a yeast
vacuole transmembrane protein that functions as an iron
and manganese transporter. .
Length = 225
Score = 27.7 bits (62), Expect = 5.3
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 172 EEKKEEDEIE---EEENEEEEEVKQKKNKEEEE 201
E+K+EE EIE E E E E+ K EE
Sbjct: 67 EKKREEWEIENYPEGEKSEMVEIYSLKGLSEEV 99
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 27.2 bits (59), Expect = 5.3
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
+++ EEEE E EEE +++ EEE EEE + EE E+ E E E E E E + + E
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 235 EE 236
E
Sbjct: 120 PE 121
Score = 26.8 bits (58), Expect = 6.7
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
++E EEEEE + ++ EEE E EE+ EE+ +E GE E E E E + + E E E E
Sbjct: 61 DDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Score = 26.5 bits (57), Expect = 8.9
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A + + D+ EEE E E E + ++ E EEE EE+ E +E +EE E E E E E
Sbjct: 52 ADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Query: 229 KQKKNEEEEEEEEVLIK 245
+ + E E E +K
Sbjct: 112 PEPEPEPEPEPGAATLK 128
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 26.8 bits (60), Expect = 5.4
Identities = 22/79 (27%), Positives = 53/79 (67%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E+++E +E++ + + EE ++++ ++ EEE +K+E+E+++ + ++ +E K++
Sbjct: 4 EKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRR 63
Query: 232 KNEEEEEEEEVLIKLEEEE 250
+ E++ EEE+ L K +EEE
Sbjct: 64 RAEKKAEEEKKLRKEKEEE 82
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 27.7 bits (61), Expect = 5.4
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
E+E K+ED E+ ++ E E KQK KEE ++E E D
Sbjct: 35 EKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVD 74
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 27.9 bits (62), Expect = 5.4
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
E++ E+E E ++ + EE+ E+ E E E E +EE E+ + ++ E
Sbjct: 215 IEMQTAVTEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPIT 274
Query: 238 E 238
E
Sbjct: 275 E 275
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 27.7 bits (62), Expect = 5.5
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKE-EDEIEKEEGENEEEEEEEVVKQKKNEEE 236
N EEEV+ K + EEE ++KK+ + + K+ E V E
Sbjct: 163 NPTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
>gnl|CDD|227543 COG5218, YCG1, Chromosome condensation complex Condensin, subunit G
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 885
Score = 28.0 bits (62), Expect = 5.5
Identities = 10/61 (16%), Positives = 24/61 (39%)
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
E + +EE + KK+ + + ++ + V+ +K++ +EE
Sbjct: 825 EQDDGDPRSQEELCDVKKDLENMSIQDTSTVAKNVSFVLPDEKSDAMSIDEEDKDSESFS 884
Query: 250 E 250
E
Sbjct: 885 E 885
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 26.5 bits (59), Expect = 5.6
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 54 LDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD------HYAPQYLILEVIQNKIENVELP 106
LDVG GTG + L +V +D A + + + E++ P
Sbjct: 1 LDVGCGTGLLAEAL------ARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFP 54
Query: 107 EK-VDIIVSEWMGFYLLHESMIDSVI--FARDKFLKPEGVMY 145
++ D++VS + L H + + AR LKP G +
Sbjct: 55 DESFDVVVSSLV---LHHLPDPERALREIAR--VLKPGGKLV 91
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 28.1 bits (62), Expect = 5.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 199 EEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ +EE ++K +D+ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEA 81
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 27.8 bits (62), Expect = 5.7
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
++ + +++ ++ EE +++ K E+ EE KK
Sbjct: 21 LQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 28.0 bits (63), Expect = 5.9
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 173 EKKEEDEIEEEENEEE------EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
K E IE+E+ + E E + + +E+ E K+ E + ++
Sbjct: 434 AKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALA 493
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
VK KK + ++IK +N
Sbjct: 494 RVKAKK---AAATQPIVIKAGARPDN 516
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 27.1 bits (60), Expect = 5.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKE 215
+ KK +E+EEE E +E+E+ E
Sbjct: 93 LTSKKEEEKEEEIPEPTKEEELLGE 117
>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
methyltransferase; Reviewed.
Length = 239
Score = 27.4 bits (62), Expect = 6.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 46 NIFAGKTVLDVGTGTGKSILL 66
+ G VLD+ GTG +
Sbjct: 48 GVRPGDKVLDLACGTGDLAIA 68
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 26.6 bits (59), Expect = 6.1
Identities = 10/72 (13%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 171 EEEKKEEDEIEEEE---NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN--EEEEEE 225
++ K + E +E+ +++E++ K K + + ++ + + E +++++
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 226 EVVKQKKNEEEE 237
+ K K E
Sbjct: 62 DCKKGCKWEGNT 73
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 27.2 bits (61), Expect = 6.1
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI------EKEEGENEEEEEEEVVKQKKN 233
+EE+ ++++ K KK K E+E EK E DE E GE E+++ V +K +
Sbjct: 76 VEEKVKPKKKKPKSKKPKLSPEQELEKLENDERLNALLDRLEAGETLSAEDQKWVDEKLD 135
Query: 234 EEEEEEEEVLIKLEEEEE 251
+E E++ I +++EE
Sbjct: 136 RIDELMEKLGISDDDDEE 153
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 27.7 bits (62), Expect = 6.3
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 155 PSYSPEIFKFWENIAGEEEKKEEDEIEEE-ENEEEEEVKQKKNKEEEEEEE------EKK 207
P E+F++ E+ + E + I + ++ VK+ E+ E+
Sbjct: 53 PHLLEEVFRYQESNSEPEFLVQLPFILKLLSSDVYRRVKEATRLNEKHSLSAPESFLERW 112
Query: 208 EEDEIEKEEGENEEEEEEE-----VVKQKKNEEEEEEEEVLIKLEEEEEN 252
EE + + +E+ E E KQ++ E E +L ++EE
Sbjct: 113 EELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELISG 162
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 28.0 bits (62), Expect = 6.8
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
E +KK++ E+ + E++ KK+K++EEEE+ EED + K + E
Sbjct: 4 ESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQ-LSEEDAMLKGDLE 50
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 27.4 bits (61), Expect = 6.8
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+ + + EE E E+++K +EEEE + +K+ DE+E+E EEE ++
Sbjct: 18 EEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEER 77
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
++ E E +E + EEE
Sbjct: 78 ERLEAEVDEATAEVAKLEEE 97
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 26.5 bits (59), Expect = 6.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EEKKEE+E E+E+ E+EEE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 26.1 bits (58), Expect = 8.2
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 169 AGEEEKKEEDEIEEEENEEEEE 190
A EEKKEE+E EEE+ E EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 27.9 bits (63), Expect = 6.8
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
++E ++++ +E EE+++K K + +E ++K E E++K
Sbjct: 239 QKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKK 278
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 27.7 bits (61), Expect = 6.9
Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK---EEDEIEKEEGENEEEEEEEVV 228
+ E + E E ++ E ++ +E++ +E ++ ++E +
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLT 143
Query: 229 KQKKNEEEE 237
KQ ++ +
Sbjct: 144 KQAQDLQTR 152
Score = 27.3 bits (60), Expect = 8.3
Identities = 13/77 (16%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
+ D+I + E+ + ++ E E + E++K + E +E+ ++N
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQK-ARQEREAVRQELAAARQNLA 133
Query: 236 EEEEEEVLIKLEEEEEN 252
+ ++E L +L ++ ++
Sbjct: 134 KAQQE--LARLTKQAQD 148
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 27.9 bits (62), Expect = 6.9
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 17/96 (17%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNK----------------EEEEEEEEKKEEDEIEK 214
+E+ E + N E + K K ++EEEEE ED +
Sbjct: 428 KEDLPEATHVTSSVNSESLVTEVKTTKSVEHKSESSSSDGSGHDDEEEEEPLLSEDRVIT 487
Query: 215 EEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
E EE E E+ + + E + +E EV + +EEE
Sbjct: 488 SSVE-EEVTEGELWYELEKELQRQETEVDAQAQEEE 522
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 27.8 bits (62), Expect = 7.0
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
+ E+K ++ +++ +++EE K K+ K+E+ E E++ +E
Sbjct: 338 NVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 27.4 bits (61), Expect = 7.2
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+IA E + EE + V+QK+ K+EE + +E+K+ED IE E+ E EE
Sbjct: 329 SIATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQED-IEFEKRFKELMEE 385
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 27.6 bits (62), Expect = 7.1
Identities = 36/144 (25%), Positives = 50/144 (34%), Gaps = 33/144 (22%)
Query: 35 EAYRAA---ICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQY 90
EA RA I + + G T+LD+G G G +I + V + Q
Sbjct: 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE------YGVTVVGVTLSEEQL 108
Query: 91 LILEVIQNKI------ENVE--------LPEKVDIIVSEWMGFYLLHESMIDSVIFARDK 136
+ +I +NVE E D IVS M ++ E+ D
Sbjct: 109 ---AYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEHVGKEN-YDDFFKKVYA 164
Query: 137 FLKPEGVMYPYKCILHSAPSYSPE 160
LKP G M +LHS E
Sbjct: 165 LLKPGGRM-----LLHSITGPDQE 183
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 27.0 bits (60), Expect = 7.1
Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W E+ K+ +DE+ E + ++E +K ++ EK+ G++ E+
Sbjct: 35 WTETPEEKAKRLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQH 94
Query: 225 EEVVKQKKNEEEEEEEE 241
++ KQKK ++EEE ++
Sbjct: 95 QK--KQKKKKKEEENDD 109
>gnl|CDD|235604 PRK05778, PRK05778, 2-oxoglutarate ferredoxin oxidoreductase
subunit beta; Validated.
Length = 301
Score = 27.5 bits (62), Expect = 7.1
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
++ EE+ + + + K EEE K K E EE E + + E
Sbjct: 231 LKLEEDYDPTDRDKAAEKMLEEELGGKIPIGVFYKNERP-TFEERLEKLIEPLLELPPAA 289
Query: 240 EE 241
Sbjct: 290 LR 291
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 26.3 bits (58), Expect = 7.2
Identities = 15/78 (19%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EEKK E + + ++ +K++K K++ + + + K+ + +++++E +
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTAR---PKATKKGQKKDKKKDEFPEFPE 58
Query: 232 KNEEEEEEEEVLIKLEEE 249
+++ E+ + I EEE
Sbjct: 59 ESKRRRTEDGLPIYTEEE 76
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 27.2 bits (61), Expect = 7.3
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 49 AGKTVLDVGTGTG 61
G VL+VGTG+G
Sbjct: 23 KGDRVLEVGTGSG 35
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 27.0 bits (60), Expect = 7.3
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
KKE +E + EE+K+ ++K ++E++E +K+ DE+EKEE
Sbjct: 96 KKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 26.6 bits (59), Expect = 9.5
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
++E+++ E EE KK D+++KE+ E ++ +E ++KK
Sbjct: 96 KKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKK 140
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 27.5 bits (62), Expect = 7.4
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEE-EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
+ E +A E KK+ + +EE E +V+ +E +E +E+ E
Sbjct: 213 SVINAQEELALEVGKKKWELEPPSLDEELEAKVRDLAE-DELKEAVGIREKQERSAALDA 271
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+E+ EEE+ + + +E + +L KLE++
Sbjct: 272 IKEKIEEELSGE-EESSLKEIKAILEKLEKKP 302
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 27.5 bits (62), Expect = 7.6
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+++K ++EE EE + + +++ + E+ EEE ++K+ EE +E
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQE 225
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus in
conjunction with the polytopic membrane protein EsaA,
YukC (pfam10140) and YukAB, which is a membrane-bound
ATPase containing Ftsk/SpoIIIE domains (pfam01580)
called EssC in S. aureus and Snm1/Snm2 in Mycobacterium
tuberculosis. Proteins homologous to EssA, YukC, EsaA
and YukD seem absent from mycobacteria.
Length = 145
Score = 26.8 bits (59), Expect = 7.6
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
K ++E+ E+K E E++K E E EE + +KKN E++E E++ L E+
Sbjct: 24 KTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSED 77
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 27.6 bits (61), Expect = 7.6
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E E E+ ++ E E + Q+K E+E E++++ + E E EE+ E +
Sbjct: 654 CMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQ-ELIAKCRELEEKIERAE 712
Query: 230 QKKNEEEEEEEEVLIKLEEE 249
Q++N ++ +EEE IK E+E
Sbjct: 713 QEENMQKLDEEEQKIKQEKE 732
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 26.2 bits (58), Expect = 7.6
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E E+ E++ +K ++ + ++E+E E++ + KE +EE+E
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKE 76
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 27.5 bits (62), Expect = 7.7
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 189 EEVKQ--KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
E V + +EEEEE EE++ + E + + +Q+ + +E E
Sbjct: 218 ELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPE 271
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 27.3 bits (61), Expect = 7.7
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ + ++KK +EE++ K E++++E+E G
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 27.6 bits (62), Expect = 7.7
Identities = 26/73 (35%), Positives = 45/73 (61%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
I+EE+ E +E ++K+ K EE +E +E E ++EE E E EEE ++++ ++ + E E
Sbjct: 107 RIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAERE 166
Query: 239 EEEVLIKLEEEEE 251
EE + E +EE
Sbjct: 167 EEREAERRERKEE 179
>gnl|CDD|224796 COG1884, Sbm, Methylmalonyl-CoA mutase, N-terminal domain/subunit
[Lipid metabolism].
Length = 548
Score = 27.7 bits (62), Expect = 7.8
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 178 DEIEEEENEEEEEVKQKK------NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EI E + +++ + N+ EE EE E +++ E E ++ + K
Sbjct: 434 REIAESAARRQARIEEGERVIVGVNEYPEEGPEEPVEILKVD-----PEAVRERQIARLK 488
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
K E +EE V L +
Sbjct: 489 KVRAERDEEAVEAALAALRK 508
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 27.1 bits (60), Expect = 7.9
Identities = 12/80 (15%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 174 KKEEDEIEE---EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
KK + I + + ++E Q+ + ++++ +++ + E +E+ + ++ +
Sbjct: 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNE 94
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
+ + +E L +LE E+
Sbjct: 95 AREDVATARDEWLEQLEREK 114
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 27.4 bits (62), Expect = 8.0
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIE----------------KEEGENEEEEEEEVVKQK 231
+EE+++ E EE+KK ++ +E KE G+ +E+E ++
Sbjct: 502 DEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAA 561
Query: 232 KNE-----EEEEEEEVLIKLEE 248
E + E++E + K EE
Sbjct: 562 IKELKEALKGEDKEAIKAKTEE 583
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 25.8 bits (57), Expect = 8.0
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
K+KK K+ + +EE E++E EK E++ +E EE +K E+EE+
Sbjct: 23 KKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGM 71
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 27.1 bits (61), Expect = 8.1
Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 20/83 (24%)
Query: 49 AGKTVLDVGTGTG-----------KSILLQGHGVD--HHSFCTKVHPLDHYAPQYLILEV 95
G+TVLDVG G G K ++ G+D C + + +
Sbjct: 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVV----GIDPSQLFLC-QFEAVRKLLGNDQRAHL 176
Query: 96 IQNKIENVELPEKVDIIVSEWMG 118
+ IE + + D + S MG
Sbjct: 177 LPLGIEQLPALKAFDTVFS--MG 197
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 27.2 bits (61), Expect = 8.1
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+EE+ NEEE E +KK EE++EK E +E EE ++ E
Sbjct: 6 TLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPE 49
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein)
[Intracellular trafficking and secretion].
Length = 211
Score = 26.9 bits (59), Expect = 8.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
++KK ++ E E DE + E N E +++ + EE+E VL K
Sbjct: 38 AGGEEKKVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDETVLFKA 95
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 27.1 bits (59), Expect = 8.3
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E E E +EE+ +++ + K +E+E E+E ++E K E E E E + K
Sbjct: 47 ETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPK 106
Query: 233 NEEEEEEE 240
+ E+E
Sbjct: 107 ASDPEQEP 114
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 26.9 bits (59), Expect = 8.7
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EEKK E+E E E++ VK+K+ EEE++EE+ E + EE K
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAK 189
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 26.6 bits (59), Expect = 8.7
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 164 FWENIAG--EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
F++ I + + E D E+ +E++++ ++ K K E E + K+E +I +E E
Sbjct: 26 FFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAE 85
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EE+VK+ E + E ++ + E+E
Sbjct: 86 NVYEEIVKEAHEEADLIIERAKLEAQREKEK 116
Score = 26.6 bits (59), Expect = 9.3
Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEE--EEEKKEEDEIEKEEGENEEEE 223
I + EK +ED+ + E + + E + K KEE ++ EE K + + + +E + EE
Sbjct: 39 SEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEE 98
Query: 224 EEEVVKQKKNEEEEEEEEV 242
+ ++++ K E + E+E+
Sbjct: 99 ADLIIERAKLEAQREKEKA 117
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 26.5 bits (59), Expect = 8.7
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
NI EE+ ++ E E+ + E E K+E + KEE E +++
Sbjct: 37 NNIKEAEERLKQ---AAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDA 93
Query: 226 EVVKQKKNEE-EEEEEEVLIKLEEE 249
E + + E E+E+E+ L +L ++
Sbjct: 94 ERLLESARAEIEQEKEQALAELRQQ 118
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 27.3 bits (61), Expect = 8.7
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQ-----------------KKNKEEEEEEEE 205
K + A EEE EED+ ++E++EEE K K E E++
Sbjct: 1055 KSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKK 1114
Query: 206 KKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
+KE ++++ ++ E+ + ++ E+EE EE+ + K
Sbjct: 1115 EKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAK 1154
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 26.9 bits (60), Expect = 8.8
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 171 EEEKKEEDEIEEEENE---EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG-------ENE 220
E ++E E++E+ E E +E+KQ+ + E E E +KE I++ EN
Sbjct: 76 AELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIELDEENR 135
Query: 221 EEEEEEVVKQKKNEEEEEEEEVL 243
E EE +++NE E E E L
Sbjct: 136 ELREELAELKQENEALEAENERL 158
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 26.9 bits (60), Expect = 9.1
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQ 67
E RA + K ++DVG GTG S+ ++
Sbjct: 17 EEVRALALSKLELHRAKHLIDVGAGTG-SVSIE 48
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 25.8 bits (57), Expect = 9.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
K+ E+EI+ E E E+EVK E + E +E+ + E
Sbjct: 46 KEFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENSP 88
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 26.7 bits (59), Expect = 9.2
Identities = 13/58 (22%), Positives = 29/58 (50%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
++ F +N+ + + E E + + E QK+N+E E+E E+ ++ +E+
Sbjct: 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140
>gnl|CDD|225664 COG3122, COG3122, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 215
Score = 26.8 bits (59), Expect = 9.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNK 197
IA EE K E+ E +++ +E++++ K
Sbjct: 80 IAAEENKAEQLERDKQLSEQQKQAALAKEY 109
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 27.2 bits (61), Expect = 9.4
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ +E +E++ E NE +E+ + + E++ EE E E+ KE+ + E +E+ +
Sbjct: 40 KLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKEL-KEKLKELEAALDELEAE 97
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 27.2 bits (60), Expect = 9.6
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ NE+ + ++++ + + E EE ++ E ++K +GE + + VV Q
Sbjct: 404 LQRVNEKTQSLRERNQELQAEVEERQEAEAHLKKTQGELIQAAKLAVVGQ 453
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 27.3 bits (62), Expect = 9.6
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E WE E +++ + ++E + +E Q +K+E E + +E+ +E E
Sbjct: 225 EAGPKWEWQPPEVDEELKAAVKELAEAKLKEAYQITDKQEREAALDAIKEEVLEALAAEE 284
Query: 220 EEEEEEEVVK 229
EEEE+E+ +K
Sbjct: 285 EEEEDEKEIK 294
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 27.2 bits (61), Expect = 9.6
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE-EGENEEEEE 224
+ ++E +++ E + K + E +++E + + E E + +E E
Sbjct: 139 DPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA 198
Query: 225 EEVVKQKKNEEEEEEE 240
+ Q+K E +E
Sbjct: 199 QLEQLQEKAAETSQER 214
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 26.4 bits (59), Expect = 9.7
Identities = 18/80 (22%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 171 EEEKKEEDEIEEEENE-EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+E KK + E+E+ E E ++ + K +K+ E +K+E E++K + +E + +
Sbjct: 25 KEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQK-----KVQEFQRKQQ 79
Query: 230 QKKNEEEEEEEEVLIKLEEE 249
+ + + ++ ++E L K+ ++
Sbjct: 80 KLQQDLQKRQQEELQKILDK 99
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 27.3 bits (61), Expect = 9.7
Identities = 15/72 (20%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+E+ + + ++ K E + +++ + + E+ + EV ++KK +++EE+++
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Query: 242 VLI-KLEEEEEN 252
I +LEE E
Sbjct: 343 KQIERLEERIEK 354
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 27.1 bits (60), Expect = 9.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 201 EEEEEKKEEDEIEKEEGENEEEEEEEV 227
E++EEK+E+ E +E E E+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHF 79
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 27.1 bits (60), Expect = 9.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 205 EKKEEDEIEKEEGENEEEEEEEVV 228
E+K E+ IEK + E+E EE++++
Sbjct: 243 ERKMEERIEKLKEEDESVEEDDLL 266
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.306 0.130 0.357
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,845,181
Number of extensions: 1476719
Number of successful extensions: 28792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14629
Number of HSP's successfully gapped: 3797
Length of query: 252
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 157
Effective length of database: 6,723,972
Effective search space: 1055663604
Effective search space used: 1055663604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 58 (26.0 bits)