RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9773
(252 letters)
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 141 bits (357), Expect = 1e-40
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 2 DMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
+++ ++ YF SY +H+ ML D +R E+YR I NP+IF K VLDVG GTG
Sbjct: 17 RGSDLQEDEDGVYFSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTG 76
Query: 62 K-SILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDII 112
S+ G + + A + + +I+ KIE V LP EKVD+I
Sbjct: 77 ILSMFAAKAGAK-KVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI 135
Query: 113 VSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP----SYSPEIFKFWENI 168
+SEWMG++LL ESM+DSV++A++K+L G +YP C + + + FW+++
Sbjct: 136 ISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDV 195
Query: 169 AGEEEKKEEDEIEEE 183
G + + + E
Sbjct: 196 YGFKMSCMKKAVIPE 210
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 140 bits (354), Expect = 6e-40
Identities = 73/185 (39%), Positives = 101/185 (54%), Gaps = 17/185 (9%)
Query: 4 EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKS 63
V K+ D +YF +Y+ L K ML D VR +AY A+ N + F GKTVLDVGTG+G
Sbjct: 18 PVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGIL 77
Query: 64 ILLQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEW 116
+ + + + +A + I+EVI+ +E++ LPEKVD+I+SEW
Sbjct: 78 AIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEW 137
Query: 117 MGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----------FWE 166
MG++LL ESM DSVI ARD++LKP GVMYP + AP S + W
Sbjct: 138 MGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIADRKRNDFDGAMADWH 197
Query: 167 NIAGE 171
N + E
Sbjct: 198 NFSDE 202
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 139 bits (351), Expect = 1e-39
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 7 KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
++ +YF+ Y L + M+ D VR Y+ AI N F K VLDVG G+G
Sbjct: 8 EESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSFF 67
Query: 67 QGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMGF 119
+ + + +A + + VI K+E V LPE+VDII+SE MG+
Sbjct: 68 AAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY 127
Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK 163
L +E M++S + A+ K+LKP G M+P +H AP +++
Sbjct: 128 MLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLYM 170
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 140 bits (353), Expect = 6e-39
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 8/164 (4%)
Query: 6 VKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSIL 65
++ +YF+ Y L + M+ D VR Y+ AI N F K VLDVG G+G
Sbjct: 115 TEESSAVQYFQFYGYLSQQQNMMQDYVRTGTYQRAILQNHTDFKDKIVLDVGCGSGILSF 174
Query: 66 LQGHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELPEKVDIIVSEWMG 118
+ + + +A + + VI K+E V LPE+VDII+SE MG
Sbjct: 175 FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMG 234
Query: 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIF 162
+ L +E M++S + A+ K+LKP G M+P +H AP +++
Sbjct: 235 YMLFNERMLESYLHAK-KYLKPSGNMFPTIGDVHLAPFTDEQLY 277
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 135 bits (342), Expect = 2e-38
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 14/172 (8%)
Query: 12 EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG 70
+ YF+SY +H+ ML DTVR +YR AI N ++F K VLDVG GTG S+ HG
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 71 VDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGFYLL 122
H + + A + + + +++ K+E+V LP KVDII+SEWMG++LL
Sbjct: 61 AK-HVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119
Query: 123 HESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
+ESM+D+V++ARD +L G+++P KC +H A + +W+++ G
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 171
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 134 bits (337), Expect = 1e-37
Identities = 61/175 (34%), Positives = 99/175 (56%), Gaps = 14/175 (8%)
Query: 9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQ 67
++ YF+SY +H+ +L D VR YR ++ N ++F K VLDVG+GTG +
Sbjct: 26 TSKDYYFDSYAHFGIHEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAA 85
Query: 68 GHGVDHHSFCTKVHPLDHYAPQYL-------ILEVIQNKIENVELP-EKVDIIVSEWMGF 119
G + + YA + + ++ +I+ K+E VELP EKVDII+SEWMG+
Sbjct: 86 KAGAR-KVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144
Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
L +ESM+++V+ ARDK+L P+G+++P + L+ + +WEN+ G
Sbjct: 145 CLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYG 199
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 88.9 bits (219), Expect = 2e-20
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 33/175 (18%)
Query: 20 DLEVHKLMLDDTVRNEAYRAAICD-----NPNIFAGKTVLDVGTGTGKSILL-------- 66
D V+ D ++ + Y A+ + + +G G G
Sbjct: 375 DSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREY 434
Query: 67 -QGHGVDHHSFCTKVHPLDHYAPQYLIL------------EVIQNKIENVELP------E 107
S K++ ++ + L +I++ + ++ E
Sbjct: 435 NNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFE 494
Query: 108 KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIF 162
+ DIIVSE +G + +E + + FLKP + P K + P S I
Sbjct: 495 QPDIIVSELLGSFGDNE-LSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIH 548
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 61.1 bits (148), Expect = 2e-11
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 29/204 (14%)
Query: 1 MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGT 60
M ++ +D++ +FE Y+ + K L + + D F KTVLD+G G
Sbjct: 1 MSLKE-NKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPD----FNQKTVLDLGCGF 55
Query: 61 GK-SILLQGHGVDHHSFCTKVHPLD------HYAPQYL---ILEVIQNKIENVELP-EKV 109
G I HG V +D A + ++ Q IE++ + +
Sbjct: 56 GWHCIYAAEHGAKK------VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAY 109
Query: 110 DIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIA 169
++++S L + + D + LK G P ++ + + W
Sbjct: 110 NVVLSSLA---LHYIASFDDICKKVYINLKSSGSFI----FSVEHPVFTADGRQDWYTDE 162
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQ 193
+ + E+
Sbjct: 163 TGNKLHWPVDRYFNESMRTSHFLG 186
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 55.3 bits (133), Expect = 2e-09
Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 15/174 (8%)
Query: 3 MEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK 62
M + D + E A+ N+ + D+G GTG
Sbjct: 1 MSNENKTIHDFELNLICDFFSNMERQGPGSP-EVTLKALSFIDNLTEKSLIADIGCGTGG 59
Query: 63 -SILLQGH------GVD-HHSFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIV 113
+++L GH G+D F + + + I ++++ E++D+I
Sbjct: 60 QTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIW 119
Query: 114 SEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWEN 167
SE + + E ++ K+LK G + +C + EI FW +
Sbjct: 120 SEGAIYNIGFERGLNEW----RKYLKKGGYLAVSECSWFT-DERPAEINDFWMD 168
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 53.1 bits (128), Expect = 3e-08
Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 2/94 (2%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEV--KQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ K+ + E + NE + + Q K K E + E + + +
Sbjct: 887 LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDL 946
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + E+ E E ++ + +
Sbjct: 947 LSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 980
Score = 47.7 bits (114), Expect = 2e-06
Identities = 10/81 (12%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + E + E + ++ + E E K+ ++ + +
Sbjct: 926 KNLEAFDGECQSLEGQSNSDLLSIL-AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 984
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
E E L K+E+
Sbjct: 985 TYKNTLLAELERLQKIEDLHH 1005
Score = 43.5 bits (103), Expect = 4e-05
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
++ EK E++ E E + + K ++ +K E K E +
Sbjct: 857 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGD 916
Query: 226 EVV-KQKKNEEEEEEEEVLIKLEEEEEN 252
+ Q K + E + LE + +
Sbjct: 917 SITAVQAKLKNLEAFDGECQSLEGQSNS 944
Score = 36.6 bits (85), Expect = 0.007
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
N E ++++ ++ + + KN E E +K ED
Sbjct: 958 YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 50.9 bits (121), Expect = 4e-08
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
IA + +E E + EE+ + Q+ + + E+E +E+ + + EE + E+ E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE- 132
Query: 228 VKQKKNEEEEEEEEVLIKLEEEEEN 252
K K N ++ ++ + +
Sbjct: 133 -KNKINNRIADKAF----YQQPDAD 152
Score = 47.1 bits (111), Expect = 9e-07
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
PE + W EE++K E++ E+E ++K K+ EE + + E+ +EK +
Sbjct: 84 PESIRKWR----EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ--VEKNKIN 137
Query: 219 NEEEEEEEVVKQKKNEEEEEEEEVL 243
N ++ ++ + +++
Sbjct: 138 NRIADKAFY--------QQPDADII 154
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 51.6 bits (124), Expect = 1e-07
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 160 EIFKFWENIAGEEEKKEE--DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ ++ + G E K + +I+E+ E + +++ N E E +K ++E+
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EE + EE + + L + + E++
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Score = 50.9 bits (122), Expect = 1e-07
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
E ++ E EEE K N+ +EE K E+ + + E + EE + K
Sbjct: 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+ + E +E L+ E+E
Sbjct: 1019 HETEQLVSELKEQNTLLKTEKE 1040
Score = 50.9 bits (122), Expect = 2e-07
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE--EEEEEEVV 228
++EI + E + +KK EE ++ + + E + + + +N + E+EE+
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
++ ++ +E E + KL EE +
Sbjct: 1044 RRIHDQAKEITETMEKKLVEETK 1066
Score = 48.2 bits (115), Expect = 1e-06
Identities = 16/88 (18%), Positives = 36/88 (40%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
K+E +++ E E K E + + ++K +++ ++ + E+
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E+ + E+ + E L EEE +N
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEEEAKN 981
Score = 48.2 bits (115), Expect = 1e-06
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK----EEGENEEEEEEE 226
+ + E+ IEE ++ + E +Q ++ +E+ K E++E+ + + E E E++
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Query: 227 VVKQKKNEEEEEEEEVL 243
+V++ K E + +E L
Sbjct: 1061 LVEETKQLELDLNDERL 1077
Score = 47.8 bits (114), Expect = 2e-06
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE---EV 227
+ E + + ++ E ++ Q + K +E+ +E K +++ E E E+ +V
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 228 VKQKKNEEEEEEEEVLIKLEEEE 250
+ + +EEE + + +EE
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEE 992
Score = 45.9 bits (109), Expect = 7e-06
Identities = 18/87 (20%), Positives = 43/87 (49%), Gaps = 6/87 (6%)
Query: 171 EEEKKEEDEIEEEENEE---EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE---EEEE 224
EE K E+ + + E+ EE + K++ E+ E K++ ++ E+ E ++
Sbjct: 991 EEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+E+ + + + EE +++ + L +E
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDERL 1077
Score = 44.7 bits (106), Expect = 1e-05
Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-----EEGENEEEEEE 225
++E +EE+ + + + + + E+K E+ +K E+ +E +E+
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
++K +K E + ++ E E
Sbjct: 1033 TLLKTEKEELNRRIHDQAKEITETME 1058
Score = 43.9 bits (104), Expect = 3e-05
Identities = 13/82 (15%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVK 229
+ ++ + +E + E E+++ + EEE K + + + E + +E +
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+K EE ++ + E+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVS 1026
Score = 42.4 bits (100), Expect = 9e-05
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE----EEKKEEDEIEKEEGENEEEEEEE 226
E + E + E + ++ ++ +E+ +E EK EI + + E
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
++ + E + VL EE +
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAK 995
Score = 41.2 bits (97), Expect = 2e-04
Identities = 13/82 (15%), Positives = 28/82 (34%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ K E E + ++ K + + + +E+ KE + ++ E E K
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ + E E K
Sbjct: 966 RSDVERLRMSEEEAKNATNRVL 987
Score = 40.1 bits (94), Expect = 4e-04
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 9/89 (10%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNK----EEEEEEEEKKEEDEIEKEEGE-----NEEE 222
+ I + + +++ K E E KK +E + + +E+
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+E + + +K N E KL + E
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Score = 39.3 bits (92), Expect = 8e-04
Identities = 8/82 (9%), Positives = 26/82 (31%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + + K++ K + E ++ + E + + + + +
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN 941
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K+ + E+ L E
Sbjct: 942 KEYKSLLEKMNNLEITYSTETE 963
Score = 37.8 bits (88), Expect = 0.003
Identities = 10/89 (11%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+++ G + + + ++ K E ++ + + E K+ E +
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 226 EVVKQKKNEEEE--EEEEVLIKLEEEEEN 252
++ ++ + +E E + LE
Sbjct: 932 QLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Score = 37.0 bits (86), Expect = 0.004
Identities = 9/82 (10%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE-NEEEEEEEVVK 229
+ + I++ V + + + ++E + E E K
Sbjct: 861 MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYK 920
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+ E + ++ K++E+ +
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNK 942
Score = 37.0 bits (86), Expect = 0.006
Identities = 13/97 (13%), Positives = 28/97 (28%), Gaps = 2/97 (2%)
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
Y A ++ + E + + QK + + I +
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
Query: 217 GENEEEEEEEVVKQKKNEEE--EEEEEVLIKLEEEEE 251
+ +K+ K E E +++ I LE +
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Score = 28.2 bits (63), Expect = 3.5
Identities = 8/85 (9%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE-EE 226
+ + + D + + + K + E + + + +
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+V + + L KL+ E
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEAR 914
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 50.0 bits (118), Expect = 3e-07
Identities = 14/81 (17%), Positives = 25/81 (30%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E D+ E E+ E ++++ + E + E E + E
Sbjct: 42 EHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKAS 101
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E E +E E
Sbjct: 102 EVVAETPSAEAKPKSDKETEA 122
Score = 49.2 bits (116), Expect = 6e-07
Identities = 13/85 (15%), Positives = 25/85 (29%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E + + E E ++ E E + +K E E + E
Sbjct: 23 ETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEA 82
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEE 250
+ + + EE ++ E
Sbjct: 83 ATTETAEAASAAKPEEKASEVVAET 107
Score = 48.4 bits (114), Expect = 1e-06
Identities = 15/81 (18%), Positives = 28/81 (34%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E E+++E+ E E E + + EE +E E +
Sbjct: 53 EGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEA 112
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K ++E E + + +E
Sbjct: 113 KPKSDKETEAKPEATNQGDES 133
Score = 48.0 bits (113), Expect = 1e-06
Identities = 14/81 (17%), Positives = 22/81 (27%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E + + E E +K E +E E + K
Sbjct: 41 SEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKA 100
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E E K ++E E
Sbjct: 101 SEVVAETPSAEAKPKSDKETE 121
Score = 48.0 bits (113), Expect = 1e-06
Identities = 13/86 (15%), Positives = 28/86 (32%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
EN + E E + + EEK E E E + + ++
Sbjct: 59 ENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDK 118
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + + + +E + + + E+
Sbjct: 119 ETEAKPEATNQGDESKPAAEANKTEK 144
Score = 46.9 bits (110), Expect = 3e-06
Identities = 13/81 (16%), Positives = 24/81 (29%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E + + E+ + E E E K E + E E +
Sbjct: 52 NEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAE 111
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K + ++E E + +E
Sbjct: 112 AKPKSDKETEAKPEATNQGDE 132
Score = 46.1 bits (108), Expect = 6e-06
Identities = 17/82 (20%), Positives = 30/82 (36%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
GE ++ + E E E N+ E E + E++ E E K
Sbjct: 54 GEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAK 113
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
K ++E E + E + +E +
Sbjct: 114 PKSDKETEAKPEATNQGDESKP 135
Score = 46.1 bits (108), Expect = 6e-06
Identities = 11/82 (13%), Positives = 25/82 (30%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E + E + + + EE+ E + ++E K
Sbjct: 65 AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ + +E + + E+E
Sbjct: 125 EATNQGDESKPAAEANKTEKEV 146
Score = 43.0 bits (100), Expect = 6e-05
Identities = 13/82 (15%), Positives = 22/82 (26%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ E E E EE+ E + K + + E E + E Q
Sbjct: 70 TASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQ 129
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ E K + +
Sbjct: 130 GDESKPAAEANKTEKEVQPDVP 151
Score = 42.6 bits (99), Expect = 8e-05
Identities = 12/84 (14%), Positives = 25/84 (29%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E E + + + EE+ + + E ++E E
Sbjct: 65 AEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKP 124
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+ +E + K E+E +
Sbjct: 125 EATNQGDESKPAAEANKTEKEVQP 148
Score = 41.9 bits (97), Expect = 1e-04
Identities = 14/82 (17%), Positives = 29/82 (35%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E + E + EE + E E + K + E E + + +E + +
Sbjct: 79 SNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAE 138
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
E+E + +V E+ +
Sbjct: 139 ANKTEKEVQPDVPKNTEKTLKP 160
Score = 40.3 bits (93), Expect = 4e-04
Identities = 14/73 (19%), Positives = 29/73 (39%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E E + EE+ + + E + K +++ K E N+ +E +
Sbjct: 78 ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 229 KQKKNEEEEEEEE 241
+ K E+E + +
Sbjct: 138 EANKTEKEVQPDV 150
Score = 39.9 bits (92), Expect = 6e-04
Identities = 15/82 (18%), Positives = 31/82 (37%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ E E + + E K + E E K + D+ + + E + +E
Sbjct: 78 ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAA 137
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ N+ E+E + + K E+
Sbjct: 138 EANKTEKEVQPDVPKNTEKTLK 159
Score = 34.9 bits (79), Expect = 0.026
Identities = 13/84 (15%), Positives = 31/84 (36%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
E + E + E E + K K ++E E + + ++ ++ + E + E+ V
Sbjct: 87 TAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEV 146
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
+ + E+ + E
Sbjct: 147 QPDVPKNTEKTLKPKEIKFNSWEE 170
Score = 34.6 bits (78), Expect = 0.028
Identities = 15/81 (18%), Positives = 27/81 (33%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ +E E E + K ++E E + + E + + E+EV
Sbjct: 91 ASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDV 150
Query: 232 KNEEEEEEEEVLIKLEEEEEN 252
E+ + IK EE
Sbjct: 151 PKNTEKTLKPKEIKFNSWEEL 171
Score = 34.2 bits (77), Expect = 0.040
Identities = 22/84 (26%), Positives = 33/84 (39%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A K EE E E K K +KE E + E + DE + N+ E+E +
Sbjct: 90 AASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPD 149
Query: 229 KQKKNEEEEEEEEVLIKLEEEEEN 252
K E+ + +E+ EE
Sbjct: 150 VPKNTEKTLKPKEIKFNSWEELLK 173
Score = 34.2 bits (77), Expect = 0.044
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 2/87 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEE--EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
E E + EE+ E E + + ++E E K E E E
Sbjct: 81 EAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEEE 250
+ E Q + E+ +++
Sbjct: 141 KTEKEVQPDVPKNTEKTLKPKEIKFNS 167
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 47.9 bits (114), Expect = 2e-06
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ +++ +E E + + E K ++ E++ ED+ K E + EE
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
EEEE+ + L KL+ + E+
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHES 1039
Score = 47.1 bits (112), Expect = 3e-06
Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EEE++ +++ E+ + ++++ + + EEEE +K + E +G+ ++ E++ ++ +
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 231 KKNEE--------EEEEEEVLIKLEEEEE 251
+N + EE ++ L EEEE
Sbjct: 997 DQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Score = 43.3 bits (102), Expect = 5e-05
Identities = 20/90 (22%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN--------EEE 222
EEE+ +++ E+ + ++K+ ++ E++ K E + E EEE
Sbjct: 965 EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E+ + + + KN+ E E+ ++L++EE++
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Score = 42.5 bits (100), Expect = 8e-05
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE E + EEE E ++++ +K K +++ + +++ +E E + + E+ K
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 231 KKNEEE-EEEEEVLIKLEEEEEN 252
KK E++ E+ KL +E +
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKL 1008
Score = 41.4 bits (97), Expect = 2e-04
Identities = 18/82 (21%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ E+EE +E E +++++ + ++ + E+KK + ++ E + EEEE +Q
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA---RQ 972
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K E+ + + K+E++
Sbjct: 973 KLQLEKVTADGKIKKMEDDILI 994
Score = 40.6 bits (95), Expect = 4e-04
Identities = 16/82 (19%), Positives = 35/82 (42%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ KE +EE ++ + +++ K + + + K E I + E ++EE+ +
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K + E E L + E +
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQA 1081
Score = 40.6 bits (95), Expect = 4e-04
Identities = 16/83 (19%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE-EEEEEVVK 229
E + + E++ + ++EEE++ + E+E ++ +I + E + +E+ E K
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK 1136
Query: 230 QKKNEEEEEEEEVLIKLEEEEEN 252
+N+ E+++ ++ +LE +
Sbjct: 1137 AARNKAEKQKRDLSEELEALKTE 1159
Score = 40.6 bits (95), Expect = 4e-04
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+E +K + ++E E ++ E++ + + + E + + K+E+E++ E+E ++
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115
Query: 231 KKNEEEEEE-EEVLIKLEEEEEN 252
KK E E ++ LE E+
Sbjct: 1116 KKIRELESHISDLQEDLESEKAA 1138
Score = 40.6 bits (95), Expect = 4e-04
Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKE------EEEEEEEKKEEDEIEKEEGENEEEEE 224
EE + +E+E +++ +K+ + E +E+ E EK ++ EK++ + EE E
Sbjct: 1095 EELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELE 1154
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + E+ + +L +
Sbjct: 1155 A---LKTELEDTLDTTATQQELRGSDY 1178
Score = 40.2 bits (94), Expect = 5e-04
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE+E + + + + + ++ E ++E+K E+EK + + E E + +
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 231 KKNEEEEEE-EEVLIKLEEEEEN 252
+ + + E + L K EEE +
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQA 1099
Score = 39.0 bits (91), Expect = 0.001
Identities = 18/82 (21%), Positives = 39/82 (47%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ KK ED+I E++ + K++K EE + +E EK + + + + E +
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ ++EE+ +LE+ +
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRK 1064
Score = 37.1 bits (86), Expect = 0.004
Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ E + E EE + ++ + E E ++EE+ ++ + E ++ +++ + +
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 231 KKNEEEEEEEEVLIKLEEE 249
++ EEEE KL+ E
Sbjct: 962 EQLEEEEAA---RQKLQLE 977
Score = 36.4 bits (84), Expect = 0.008
Identities = 12/71 (16%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ ++ E I + + + E E K +NK E+++ + +E + + K E E+ + +
Sbjct: 1116 KKIRELESHISDLQEDLESE-KAARNKAEKQKRDLSEELEAL-KTELEDTLDTTATQQEL 1173
Query: 231 KKNEEEEEEEE 241
+ ++ ++++++
Sbjct: 1174 RGSDYKDDDDK 1184
Score = 36.4 bits (84), Expect = 0.009
Identities = 12/76 (15%), Positives = 38/76 (50%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E K+ E+E ++ +E+++ +K + E++++ +E+E + E E+ +
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166
Query: 226 EVVKQKKNEEEEEEEE 241
+Q+ + ++++
Sbjct: 1167 TATQQELRGSDYKDDD 1182
Score = 36.0 bits (83), Expect = 0.010
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE----EEEE 226
E E + ++E + +E+++ K K E E + ++ E++ + E + + EEE
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E+E ++ +K E E+
Sbjct: 1098 QAALARLEDETSQKNNALKKIRELES 1123
Score = 35.6 bits (82), Expect = 0.016
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ ++ ++ EEEE+ K + + E + E ++KEE +E E+ K+
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI---KR 1063
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
K E + E + +L+ +
Sbjct: 1064 KLEGESSDLHEQIAELQAQIAE 1085
Score = 34.0 bits (78), Expect = 0.046
Identities = 13/80 (16%), Positives = 30/80 (37%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E+E +++ ++ E E + + E E+ K E + E E + E
Sbjct: 1105 EDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTL 1164
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
++E K ++++
Sbjct: 1165 DTTATQQELRGSDYKDDDDK 1184
Score = 34.0 bits (78), Expect = 0.050
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++K E E++E E + + ++K +E+ + E + + E +++E E +
Sbjct: 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930
Query: 231 KKNEEEEEEEEVLIKLEEE 249
+ EEEEE +L+ E
Sbjct: 931 EMEARIEEEEERSQQLQAE 949
Score = 33.3 bits (76), Expect = 0.076
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN----EEEEEEE 226
EE + +++E++ + +++ + K E++ + +++ EK + E E EE
Sbjct: 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRV 916
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+ KK E EE E+ ++EEEEE
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEE 941
Score = 32.5 bits (74), Expect = 0.15
Identities = 17/78 (21%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVKQKKN 233
+E++ ++E+ E E + + ++++ E+ + + E EEEEE + ++ +K
Sbjct: 892 EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Query: 234 EEEEEEEEVLIKLEEEEE 251
+ +++ ++ +LEEEE
Sbjct: 952 KMQQQMLDLEEQLEEEEA 969
Score = 31.0 bits (70), Expect = 0.41
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
++ + E E+E++ + EE + K + E E + E+ + + +E EE
Sbjct: 872 RQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931
Query: 229 KQKKNEEEEEEEEVLI----KLEEEEEN 252
+ + EEEEE + L K++++ +
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLD 959
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 46.0 bits (109), Expect = 3e-06
Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 26/217 (11%)
Query: 13 EYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGH 69
E + + +++ ++ + I + VLD+ GTG ++ L
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 70 GVDHHSFCTKVHPLD-----------HYAPQYLILEVIQNKIENVELPEKVDIIVSEWMG 118
G + V LD + L +E +Q + + + D + +
Sbjct: 63 GYE-------VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST 115
Query: 119 FYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKF-WENIAGEEEKKEE 177
E + + + LKP GV Y W GEE+
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPGGVF----ITDFPCWFYGGRDGPVVWNEQKGEEKLVIM 171
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
D E E ++ K+ E + D+
Sbjct: 172 DWREVEPAVQKLRFKRLVQILRPNGEVKAFLVDDELN 208
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 46.2 bits (109), Expect = 4e-06
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 20/138 (14%)
Query: 21 LEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV 80
E +L R+ +R A+ ++ G V V G +L + ++
Sbjct: 92 YERLPAVLATRERHGHFRRALQ--RHLRPGCVVASVPCGWMSELLALDYSACPGV---QL 146
Query: 81 HPLDHYAPQYL--------------ILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESM 126
+D Y P+ L + + + ++ E D++ S + Y ++
Sbjct: 147 VGID-YDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDAR 205
Query: 127 IDSVIFARDKFLKPEGVM 144
+ + + LKP G +
Sbjct: 206 VTELYRRFWQALKPGGAL 223
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 45.2 bits (106), Expect = 1e-05
Identities = 16/86 (18%), Positives = 34/86 (39%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E +E + E + E E ++++K ++ E E+ +KE E+E E
Sbjct: 663 EITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNA 722
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + + E E E + + +
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKA 748
Score = 43.6 bits (102), Expect = 3e-05
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE-EDEIEKEEGENEEEEEEEVVK 229
E +K D+ E E+ +E + + E K E E E E E + +K
Sbjct: 688 LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
+ E E E +K E E
Sbjct: 748 AQALAIETEAELERVKKVREME 769
Score = 42.1 bits (98), Expect = 1e-04
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ ++ + IE N +E K E + E+E + E +K ++E E+
Sbjct: 648 QRTRDALQRSVQLAIEITTNSQEAAAKH----EAQRLEQEARGRLERQKILDQSEAEKAR 703
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + + + E K E E
Sbjct: 704 KELLELEAMSMAVESTGNAKAEAESR 729
Score = 41.3 bits (96), Expect = 2e-04
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E+E + E ++ ++ E E K +K E E E K E E+ E
Sbjct: 676 EAQRLEQEARGRLERQKILDQSEAE-KARKELLELEAMSMAVESTGNAKAEAESRAEAAR 734
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + + + + + I+ E E E
Sbjct: 735 IEGEGSVLQAKLKAQALAIETEAELE 760
Score = 40.2 bits (93), Expect = 4e-04
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E K E + E+E E ++ ++ E E+ ++ E E E+ + E +
Sbjct: 670 EAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESR 729
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E E VL + +
Sbjct: 730 AEAARIEGEGSVLQAKLKAQA 750
Score = 40.2 bits (93), Expect = 4e-04
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE----E 221
+ E+ +KE E+E E K E E + E + + + + + E
Sbjct: 695 DQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIE 754
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E E +K E E ++LE +
Sbjct: 755 TEAELERVKKVREMELIYARAQLELEVSKA 784
Score = 39.4 bits (91), Expect = 8e-04
Identities = 13/81 (16%), Positives = 30/81 (37%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + E E E +++ + E+ +E + E + E N + E E +
Sbjct: 673 AKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEA 732
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ E E + +K +
Sbjct: 733 ARIEGEGSVLQAKLKAQALAI 753
Score = 38.6 bits (89), Expect = 0.002
Identities = 14/86 (16%), Positives = 26/86 (30%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
I GE + + E E ++ K E E + + E+E + + E
Sbjct: 733 ARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEA 792
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ K+ L E +
Sbjct: 793 KKFKEMTEALGPGTIRDLAVAGPEMQ 818
Score = 36.7 bits (84), Expect = 0.005
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVK-QKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E + E IE E + + ++K Q E E E E K+ E+E + E E +
Sbjct: 726 AESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQ 785
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
Q N E ++ +E+ L
Sbjct: 786 QLANVEAKKFKEMTEALGPGTI 807
Score = 36.3 bits (83), Expect = 0.009
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
D E ++ +++ + E +E + E E+E + +QK ++
Sbjct: 637 SVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQ 696
Query: 236 EEEEEEVLIKLEEEEEN 252
E E+ LE E +
Sbjct: 697 SEAEKARKELLELEAMS 713
Score = 35.9 bits (82), Expect = 0.010
Identities = 15/81 (18%), Positives = 28/81 (34%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E + E E E + + + E E E ++ + E E + E EV K
Sbjct: 725 EAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKA 784
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ E ++ +
Sbjct: 785 QQLANVEAKKFKEMTEALGPG 805
Score = 33.6 bits (76), Expect = 0.055
Identities = 14/81 (17%), Positives = 31/81 (38%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A + E E+E + E E+ + + E E + ++ + K+ E E +
Sbjct: 748 AQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTI 807
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+ E + ++L L +
Sbjct: 808 RDLAVAGPEMQVKLLQSLGLK 828
Score = 33.6 bits (76), Expect = 0.061
Identities = 8/83 (9%), Positives = 27/83 (32%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
++ + + + V+ + + + + EI E + E + +
Sbjct: 621 KARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRL 680
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+Q+ E ++ + E+
Sbjct: 681 EQEARGRLERQKILDQSEAEKAR 703
Score = 27.1 bits (59), Expect = 6.3
Identities = 7/68 (10%), Positives = 22/68 (32%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
I E E + ++ E E + + + ++ + ++ + E + V
Sbjct: 753 IETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAV 812
Query: 228 VKQKKNEE 235
+ +
Sbjct: 813 AGPEMQVK 820
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 44.3 bits (105), Expect = 2e-05
Identities = 10/78 (12%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + E + E + ++ + E E K+ ++ + +
Sbjct: 918 KNLEAFDGECQSLEGQSNSDLLSIL-AQLTELNYNGVPELTERKDTFFAQQWTGVKSSAE 976
Query: 231 KKNEEEEEEEEVLIKLEE 248
E E L K+E+
Sbjct: 977 TYKNTLLAELERLQKIED 994
Score = 33.1 bits (76), Expect = 0.090
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
N E ++++ ++ + + KN E E +K ED
Sbjct: 950 YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 42.8 bits (101), Expect = 3e-05
Identities = 17/79 (21%), Positives = 32/79 (40%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E+ E+ +E+ +E E + + + + EEE E E E E+ ++
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 233 NEEEEEEEEVLIKLEEEEE 251
+ + E+ KL E E
Sbjct: 62 AAAKAQIAELEAKLSEMEH 80
Score = 42.8 bits (101), Expect = 3e-05
Identities = 16/78 (20%), Positives = 33/78 (42%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ EK+ ++ +E E E+ ++++ + EEE E+ +E E E+
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELA 62
Query: 231 KKNEEEEEEEEVLIKLEE 248
+ E E L ++E
Sbjct: 63 AAKAQIAELEAKLSEMEH 80
Score = 42.0 bits (99), Expect = 5e-05
Identities = 18/87 (20%), Positives = 34/87 (39%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E E+ +E E E+ EE ++++ EE +E E ++ EE
Sbjct: 5 EKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAA 64
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ + + E E ++L + EN
Sbjct: 65 KAQIAELEAKLSEMEHRYLRLYADFEN 91
Score = 38.6 bits (90), Expect = 9e-04
Identities = 17/73 (23%), Positives = 27/73 (36%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+E+ E + E+ + + E+ EEE + E E EE EE + + EE
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 240 EEVLIKLEEEEEN 252
E E
Sbjct: 61 LAAAKAQIAELEA 73
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 42.6 bits (100), Expect = 4e-05
Identities = 27/163 (16%), Positives = 47/163 (28%), Gaps = 40/163 (24%)
Query: 3 MEVVKDHDEE--EYF----ESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDV 56
M E Y+ Y V + A AA+ VL++
Sbjct: 1 MTTSHGLIESQLSYYRARASEYDATFVPY-------MDSAAPAALERLRAGNIRGDVLEL 53
Query: 57 GTGTGK-SILLQGHGVDHHSFCTKVHPLD-----------HYAPQYLILEVIQNKIENVE 104
+GTG + L G V LD H +E Q + +
Sbjct: 54 ASGTGYWTRHLSGLADR-------VTALDGSAEMIAEAGRHGLDN---VEFRQQDLFDWT 103
Query: 105 LPEKVDIIVSEWMGFYLLH--ESMIDSVIFARDKFLKPEGVMY 145
+ D + + +L H + ++ + + P GV+
Sbjct: 104 PDRQWDAV---FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 42.1 bits (99), Expect = 1e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK----EEGENEEEEEEEVVK 229
++D +E E++ EE ++N E + ++ I+ + EE +
Sbjct: 2 PSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKT 61
Query: 230 QKKNEEEEEEEEVLIK 245
+E E LIK
Sbjct: 62 VPDLNNCKENYEFLIK 77
Score = 29.0 bits (65), Expect = 1.6
Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV-------VKQKKNEEEEEEEEVLI 244
E++ EE E+ + + + E+ + +K E + E+ V
Sbjct: 5 DDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPD 64
Query: 245 KLEEEEE 251
+E
Sbjct: 65 LNNCKEN 71
Score = 29.0 bits (65), Expect = 1.9
Identities = 10/56 (17%), Positives = 21/56 (37%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E++ E+ +E E N + E+ + N + E LE+ +
Sbjct: 9 ESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPD 64
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 40.2 bits (94), Expect = 2e-04
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 21/117 (17%)
Query: 9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQ 67
+D+ ++F Y+ L LD A RA + + G ++D+G G G
Sbjct: 7 YDQPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPE----VGGLRIVDLGCGFGWFCRWAH 62
Query: 68 GHGVDHHSFCTKVHPLD------HYAPQYL---ILEVIQNKIENVELP-EKVDIIVS 114
HG + V LD A + + ++ + LP + D+ S
Sbjct: 63 EHGASY------VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAYS 113
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 40.2 bits (94), Expect = 3e-04
Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 18/124 (14%)
Query: 29 DDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD--- 84
+ R+ + + AG +L++G G G + + G D V D
Sbjct: 26 ERQPRSATLTKFL---GELPAGAKILELGCGAGYQAEAMLAAGFD-------VDATDGSP 75
Query: 85 ---HYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPE 141
A + L V ++ + D + + + + V+ + LKP
Sbjct: 76 ELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWA-HACLLHVPRDELADVLKLIWRALKPG 134
Query: 142 GVMY 145
G+ Y
Sbjct: 135 GLFY 138
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 40.7 bits (94), Expect = 3e-04
Identities = 16/82 (19%), Positives = 41/82 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++K E +E++E +E +KQ K E + + KE++ + + +E+ +E ++
Sbjct: 508 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 567
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ + E +++ K+ +
Sbjct: 568 ESRIMKNEIQDLQTKMRRRKAC 589
Score = 36.9 bits (84), Expect = 0.005
Identities = 9/81 (11%), Positives = 34/81 (41%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + + + + + + KE +E K+ +++E + + +E+E + +
Sbjct: 494 VKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALK 553
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ +E+ +E + +
Sbjct: 554 LQEQEQLLKEGFQKESRIMKN 574
Score = 35.7 bits (81), Expect = 0.012
Identities = 10/84 (11%), Positives = 39/84 (46%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E+ + E + ++E+ ++ +++ + E + Q ++E + +E++++ KE +
Sbjct: 508 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 567
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVL 243
E + ++ + + + +
Sbjct: 568 ESRIMKNEIQDLQTKMRRRKACTI 591
Score = 35.7 bits (81), Expect = 0.014
Identities = 14/82 (17%), Positives = 41/82 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ E+++ E E + E + E + + ++ ++ E+ E+ ++ E++
Sbjct: 479 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 538
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ +E+E + +KL+E+E+
Sbjct: 539 RVQLLKEQERTLALKLQEQEQL 560
Score = 35.3 bits (80), Expect = 0.016
Identities = 15/90 (16%), Positives = 37/90 (41%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
+ ++ + + + E E+E EV++ K + + + E ++ E +E
Sbjct: 463 TYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER 522
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+E +KQ + E + ++L + E
Sbjct: 523 SYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
Score = 33.8 bits (76), Expect = 0.054
Identities = 12/81 (14%), Positives = 38/81 (46%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + E + E+ +++++ +E ++ +K E++ + E E ++ +Q
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 557
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ +E ++E I E ++
Sbjct: 558 EQLLKEGFQKESRIMKNEIQD 578
Score = 33.8 bits (76), Expect = 0.057
Identities = 11/80 (13%), Positives = 35/80 (43%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
+ + + + + + + ++E E E K E + + + + E++++QK+
Sbjct: 462 QTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKE 521
Query: 233 NEEEEEEEEVLIKLEEEEEN 252
+E +++ K+E +
Sbjct: 522 RSYQEHLKQLTEKMENDRVQ 541
Score = 26.8 bits (58), Expect = 8.6
Identities = 9/82 (10%), Positives = 34/82 (41%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E +E ++ + E EV + + ++ + +K+ ++EK+ + ++ +E +
Sbjct: 347 TESLQELLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDR 406
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+ + +++ +
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYS 428
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 40.2 bits (94), Expect = 3e-04
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
GE K EE E+ + + ++ + EEEE E EE E +EGE E+ + +
Sbjct: 183 GELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 34.8 bits (80), Expect = 0.014
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
E +EE EV + E+KE +E E EG E+ E + + + E+ + +
Sbjct: 184 ELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVK---EGEAEQNTDNKN 240
Score = 32.9 bits (75), Expect = 0.068
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
EVK + + ++EE E + K E++E EE + EE+ E +
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVK 228
Score = 32.9 bits (75), Expect = 0.073
Identities = 9/64 (14%), Positives = 25/64 (39%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
E++ E ++ + + + + E + +EE E EE+ ++ E+
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQN 235
Query: 238 EEEE 241
+ +
Sbjct: 236 TDNK 239
Score = 32.5 bits (74), Expect = 0.080
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
+ + E+ E EEE + +E+ E +E + E + +
Sbjct: 195 VDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 31.8 bits (72), Expect = 0.17
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ + E + EE E + + E++E EE++ + E++ E +E E E+
Sbjct: 177 EVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQ 234
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 40.4 bits (94), Expect = 3e-04
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 8 DHDEEEYFESYTDLEV----HKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK- 62
E + Y D E + D R Y+A + VLDV GTG
Sbjct: 12 GVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVD 71
Query: 63 SILLQGHGVD 72
SI+L G
Sbjct: 72 SIMLVEEGFS 81
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 40.1 bits (94), Expect = 3e-04
Identities = 11/62 (17%), Positives = 20/62 (32%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
EE + E + + ++ E E + EE + E E + E+
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
Query: 229 KQ 230
Q
Sbjct: 236 AQ 237
Score = 38.6 bits (90), Expect = 8e-04
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
+ E E E + + E EE E E + EE + E E+ + N
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 235 EEE 237
+ +
Sbjct: 235 DAQ 237
Score = 37.8 bits (88), Expect = 0.002
Identities = 7/62 (11%), Positives = 19/62 (30%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
E+ E + + + + E E + E+ + +N + E+
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
Query: 230 QK 231
+
Sbjct: 236 AQ 237
Score = 37.8 bits (88), Expect = 0.002
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
+ +E+E E + + EE E E D +E E+ + +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 234 EEE 236
+ +
Sbjct: 235 DAQ 237
Score = 35.9 bits (83), Expect = 0.007
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+ EE E E + Q E E+ E +E + E + E + E+ +
Sbjct: 176 LTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
Query: 240 EE 241
+
Sbjct: 236 AQ 237
Score = 35.9 bits (83), Expect = 0.007
Identities = 11/61 (18%), Positives = 19/61 (31%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
EE E E + E EE + E + E + E E+ + +
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Query: 239 E 239
+
Sbjct: 237 Q 237
Score = 35.5 bits (82), Expect = 0.011
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE 223
E A + + + E EE + EE + + ED + +N + +
Sbjct: 180 ELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 35.1 bits (81), Expect = 0.014
Identities = 12/56 (21%), Positives = 20/56 (35%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
EE E E + + + +EE E + EE + E + E+N
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
Score = 33.9 bits (78), Expect = 0.032
Identities = 15/61 (24%), Positives = 23/61 (37%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
V + EE E E + + GE EE E V++ + EE + E +
Sbjct: 171 VLPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDS 230
Query: 251 E 251
E
Sbjct: 231 E 231
Score = 32.0 bits (73), Expect = 0.14
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E E + + E E E E + + E E+ E+ +
Sbjct: 181 LEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
Score = 30.9 bits (70), Expect = 0.27
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ E E + + + E E E ++ + E E+ E+ +
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSD 235
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 39.8 bits (93), Expect = 4e-04
Identities = 36/228 (15%), Positives = 71/228 (31%), Gaps = 29/228 (12%)
Query: 1 MDMEVVKDHDEEEYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGT 58
M + +Y +L VH+ D R A AA+ + ++LDV
Sbjct: 1 MAHSSATAGPQADYSGEIAELYDLVHQGKGKDYHREAADLAALVRRHSP-KAASLLDVAC 59
Query: 59 GTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYL--------ILEVIQNKIENVELPEKV 109
GTG L V L+ + L + + + L +
Sbjct: 60 GTGMHLRHLADSFGT-------VEGLE-LSADMLAIARRRNPDAVLHHGDMRDFSLGRRF 111
Query: 110 DIIVSEWMGF-YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENI 168
+ + +L ++ +D+ + + P+GV+ ++ P + PE F
Sbjct: 112 SAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVV-----VVE--PWWFPENFTPGYVA 164
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKE 215
AG E + E E + + + + +E +
Sbjct: 165 AGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRI 212
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 38.5 bits (90), Expect = 7e-04
Identities = 8/55 (14%), Positives = 23/55 (41%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+E+K + EE ++ + + + E E+ ++++ E + E +
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTR 57
Score = 37.0 bits (86), Expect = 0.002
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 198 EEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+E++ E + +EI ++ E E E E ++ + +E+ + +L E +
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTR 57
Score = 36.2 bits (84), Expect = 0.005
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E + E + EE+ +++E E E E E ++E E + E
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLA-------EA 54
Query: 236 EEEEEEVLIKLEEEEEN 252
+ E + +++++ E EN
Sbjct: 55 QTRERDGILRVKAEMEN 71
Score = 27.7 bits (62), Expect = 3.2
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
++ +E + +E E + E+ + + +K E + E + +
Sbjct: 14 PEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRER 59
Score = 27.3 bits (61), Expect = 3.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
E I + E+ E E E + + ++ N E + E + +E D I + + E E
Sbjct: 16 EIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEME 70
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 39.1 bits (91), Expect = 8e-04
Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 30/150 (20%)
Query: 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE 94
EA R A+ + + D+G GTG L V + +D + +E
Sbjct: 32 EATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQ-----ITGIDLFPDF---IE 83
Query: 95 VIQNKIENVELPEKV-----------------DIIVSEWMGFYLLHESMIDSVIFARDKF 137
+ ++V D+I SE + + E ++ K+
Sbjct: 84 IFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFERGMNEW----SKY 139
Query: 138 LKPEGVMYPYKCILHSAPSYSPEIFKFWEN 167
LK G + EI FW +
Sbjct: 140 LKKGGFIAVS-EASWFTSERPAEIEDFWMD 168
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 38.0 bits (89), Expect = 0.002
Identities = 19/51 (37%), Positives = 28/51 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+ E EE EEE +EE+E + EEEEEE+K + ++EK + E
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 34.9 bits (81), Expect = 0.016
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
K E E EE E +E K+ + E EEEE++++ + +K E
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 34.1 bits (79), Expect = 0.026
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
K + +E EEEE KEE E +E EEEEEE+ K KK E+ + E++
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELM 268
Score = 33.7 bits (78), Expect = 0.034
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
+ E V++ +EE +EE++ +DE EE E E++ + + V++ + E
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 33.0 bits (76), Expect = 0.066
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+ ++ EEEE +E+KE+ + E E EEE++ + K +K + E
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 33.0 bits (76), Expect = 0.070
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ E EE EE+E KEE E+ ++E ++++ + + ++ E
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 32.6 bits (75), Expect = 0.090
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ + EE EEEE +E++ + ++ E EEEEE K K + E+ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDD-EAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 31.8 bits (73), Expect = 0.15
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 161 IFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
I+ + EE EE+E +EE E+ ++ + +EEE++ + KK E + E N
Sbjct: 211 IYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269
Score = 31.0 bits (71), Expect = 0.28
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ E EE EEEE K++K ++E E++EE++ K + + + E++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELM 268
Score = 27.6 bits (62), Expect = 3.9
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 209 EDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
EE EEE +E + +E EEEE K + ++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ D + EE E+ ++ EE EEE KEE E+ E EE +
Sbjct: 191 RTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENAD 248
Score = 37.6 bits (87), Expect = 0.002
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ + + + EE E++ +E EE EE +EE +Q + E EE
Sbjct: 187 ALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEEN 246
Query: 241 E 241
Sbjct: 247 A 247
Score = 36.8 bits (85), Expect = 0.004
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 164 FWENIAGE-EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
W +A E + + ++ ++ EE E++ ++ E EE EE
Sbjct: 173 IWYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEV 232
Query: 223 EEEEVVKQKKNEEEEEEEE 241
EE+ + EE + E
Sbjct: 233 TEEQAEATEWAEENADNVE 251
Score = 33.0 bits (75), Expect = 0.065
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
EV + + + + D + E E++ E ++ EEE +EEV + E
Sbjct: 179 REVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAE 238
Query: 249 EEE 251
E
Sbjct: 239 ATE 241
Score = 32.6 bits (74), Expect = 0.080
Identities = 11/59 (18%), Positives = 23/59 (38%)
Query: 194 KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ + + + ++ E E++ EE ++ EEE +EE + E E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWA 243
Score = 31.8 bits (72), Expect = 0.14
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 195 KNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ + + D E E+ EE EE +++ EE EE+ + EE +
Sbjct: 191 RTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAEENAD 248
Score = 31.8 bits (72), Expect = 0.16
Identities = 13/64 (20%), Positives = 25/64 (39%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
+ + + + + EE +++ E E EEE +E V +++ E E
Sbjct: 183 RLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Query: 239 EEEV 242
EE
Sbjct: 243 AEEN 246
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 37.5 bits (87), Expect = 0.002
Identities = 28/196 (14%), Positives = 60/196 (30%), Gaps = 29/196 (14%)
Query: 12 EEYF----ESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILL 66
F +Y D V + Y + ++ + VL+ G GTG + L
Sbjct: 6 NGLFDEWAHTY-DSFVQGEDIQYKEVFAHYEDIL-EDVVNKSFGNVLEFGVGTGNLTNKL 63
Query: 67 QGHGVDHHSFCTKVHPLDHYAPQYL---------ILEVIQNKIENVELPEKVDIIVSEWM 117
G V+ ++ + + + + + E+P +D IVS
Sbjct: 64 LLAGR-------TVYGIE-PSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS-TY 114
Query: 118 GFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEE 177
F+ L + + I + L G + + + K E +
Sbjct: 115 AFHHLTDDEKNVAIAKYSQLLNKGGKIV----FADTIFADQDAYDKTVEAAKQRGFHQLA 170
Query: 178 DEIEEEENEEEEEVKQ 193
++++ E ++
Sbjct: 171 NDLQTEYYTRIPVMQT 186
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 37.5 bits (87), Expect = 0.002
Identities = 24/146 (16%), Positives = 43/146 (29%), Gaps = 30/146 (20%)
Query: 12 EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG 70
+ +++ D H R + AI + VLD+G G G L G
Sbjct: 18 HQNAQAWIDAVRHG---AIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG 74
Query: 71 VDHHSFCTKVHPLD-----------HYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGF 119
++ +D A + + Q V + + D+I +
Sbjct: 75 IE-------AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICA----N 123
Query: 120 YLLHESMIDSVI--FARDKFLKPEGV 143
+ L I ++ L P G
Sbjct: 124 FALLHQDIIELLSAMRT--LLVPGGA 147
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 23/176 (13%), Positives = 47/176 (26%), Gaps = 47/176 (26%)
Query: 5 VVKDHDEEEYFESYTDL------------EVHKLMLDDTVRNEAYRAAICDNPNIFAGKT 52
V K E S + +H+ ++D Y + +
Sbjct: 417 VEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVD------HYNIPKTFDSDDL-IPP 467
Query: 53 VLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDII 112
LD GH H + + +L ++ KI +
Sbjct: 468 YLD-----QYFYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 113 VSEWMG---FYLLH--------ESMIDSVIFARDKFLKPEG---VMYPYKCILHSA 154
+ + FY + E ++++++ FL + Y +L A
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAIL----DFLPKIEENLICSKYTDLLRIA 571
Score = 29.8 bits (66), Expect = 0.94
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 14/89 (15%)
Query: 16 ESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSIL----LQGHGV 71
+ + V +L +R N+ ++D G+GK+ + + V
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELR--PAKNV-----LIDGVLGSGKTWVALDVCLSYKV 176
Query: 72 DHHSFCTKVHPLD--HYAPQYLILEVIQN 98
K+ L+ + +LE++Q
Sbjct: 177 QCK-MDFKIFWLNLKNCNSPETVLEMLQK 204
Score = 27.1 bits (59), Expect = 6.5
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 15/61 (24%)
Query: 3 MEVVKDHDEEEYFES-YTDLEV--HKLMLDDTVRN------------EAYRAAICDNPNI 47
++ ++ + F + D K+ D T N + Y+ ICDN
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 48 F 48
+
Sbjct: 541 Y 541
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 36.8 bits (85), Expect = 0.004
Identities = 19/143 (13%), Positives = 46/143 (32%), Gaps = 18/143 (12%)
Query: 12 EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG---KSILLQG 68
++ + + + + F +L++G+ G +
Sbjct: 5 SRNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF 64
Query: 69 H---GVDHHSFCTKVHPLDHYAPQYLI--LEVIQNKIENVELPEKVDIIVSEWMGFYLLH 123
+ V+ +A L + I ++ E+ +LP + D IV + L H
Sbjct: 65 NDITCVEASEEAIS------HAQGRLKDGITYIHSRFEDAQLPRRYDNIV---LTHVLEH 115
Query: 124 ESMIDSVI-FARDKFLKPEGVMY 145
+++ D +L G ++
Sbjct: 116 IDDPVALLKRINDDWLAEGGRLF 138
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 36.7 bits (85), Expect = 0.004
Identities = 30/231 (12%), Positives = 62/231 (26%), Gaps = 44/231 (19%)
Query: 11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICD--NPNIFAGKTVLDVGTGTGK-SILLQ 67
E ++ + Y L A + I D ++LDV GTG
Sbjct: 5 EVDHADVY-----DLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFT 59
Query: 68 GHGVDHHSFCTKVHPLDHYAPQYLI--------LEVIQNKIENVELPEKVDIIVSEWMGF 119
D L+ + L + Q + + L K +VS +
Sbjct: 60 KEFGD-------TAGLE-LSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSV 111
Query: 120 -YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEED 178
YL + + + + + L+P GV+ + + W E +
Sbjct: 112 GYLKTTEELGAAVASFAEHLEPGGVV----------------VVEPWW---FPETFADGW 152
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+ + V + + E + + + ++
Sbjct: 153 VSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLIT 203
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 36.8 bits (85), Expect = 0.004
Identities = 12/91 (13%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 160 EIFKFWENIAGEEEKKEE--DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ + + + EE + + + EE+ E +E+ +EDE E++
Sbjct: 34 YLLEQYNRVEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGD 93
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
++ +++ + + E+ E + +
Sbjct: 94 DDSADDDNSIDPELAREKFAELRAQYVVTRD 124
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 36.4 bits (84), Expect = 0.005
Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 15/124 (12%)
Query: 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL--------QGHGVDHHSFCTKV----- 80
N+ + + V+D+G G G + + Q GVD ++
Sbjct: 14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73
Query: 81 HPLDHYAPQYLILEVIQNKIENVEL-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK 139
L Q+ L++IQ + + D L S + + +F +
Sbjct: 74 DRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV-IEVIEHLDLSRLGAFERVLFEFAQ 132
Query: 140 PEGV 143
P+ V
Sbjct: 133 PKIV 136
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 36.6 bits (84), Expect = 0.005
Identities = 15/81 (18%), Positives = 40/81 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++ E +++ EE ++ ++ KE+E E +E ++E + + + ++E++ ++
Sbjct: 325 EAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLED 384
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
KK ++E + E
Sbjct: 385 KKKSLDDEVNAFKQRKTAAEL 405
Score = 32.4 bits (73), Expect = 0.14
Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E + ++ + +E E + + +++EEE + ++++E E +E E+E
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 226 EVVKQKKNEEEEEE-----EEVLIKLEEEEEN 252
K + ++ ++ E+ L++E
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNA 395
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 36.4 bits (84), Expect = 0.005
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 11 EEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGH 69
EY Y++ E +L + + E + + G VL+ G G G +++L +
Sbjct: 3 LTEYVHGYSEREALRL----SEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN 58
Query: 70 GVDHH 74
D
Sbjct: 59 NPDAE 63
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 36.7 bits (85), Expect = 0.005
Identities = 14/99 (14%), Positives = 36/99 (36%), Gaps = 6/99 (6%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEEN------EEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
+ F+ GE K+ E +E E E + ++ + E+E+E+ K + ++
Sbjct: 159 DEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLD 218
Query: 214 KEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
K + +++K ++ + +
Sbjct: 219 KVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYS 257
Score = 28.7 bits (64), Expect = 1.8
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
++ + + + +E E +K E +E E++ E E E E + + + +
Sbjct: 146 SEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEK 205
Query: 234 EEEEEEEEVLIKLEEEEEN 252
E+E+ + + L++
Sbjct: 206 EKEKLTKF-VEYLDKVRRI 223
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 36.2 bits (84), Expect = 0.006
Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 32/202 (15%)
Query: 17 SYTDL-EVHKLMLDDTVRNEAYRAAICD--NPNIFAGKTVLDVGTGTGK-SILLQGHGVD 72
Y ++ ++ V + + I + N LD+ GTG + L +
Sbjct: 2 CYNKFAHIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN 61
Query: 73 HHSFCTKVHPLD-----------HYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGF-Y 120
+D + Q L + I N+ + K D+I Y
Sbjct: 62 -------TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114
Query: 121 LLHESMIDSVIFARDKFLKPEGV----MYPYKCILHSAPSYS-----PEIFKFWENIAGE 171
++ + A LK GV + Y + + E+F +WEN +
Sbjct: 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFED 174
Query: 172 EEKKEEDEIEEEENEEEEEVKQ 193
+ + E + +
Sbjct: 175 DLVSMYISFFVRDGEFYKRFDE 196
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 36.2 bits (84), Expect = 0.006
Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+ E ++ + +E ++E ++++ E+D ++E
Sbjct: 218 WCSLSETNGLHKFVKGDLLQEAI----DFAQKEINGDDDEDEDDSDNVMSSDDENAPVAT 273
Query: 227 VVKQKKNEEEEEEEE 241
++E + E
Sbjct: 274 NANATTDQEGDIHLE 288
Score = 26.9 bits (60), Expect = 6.5
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 163 KFWENIAGEEEKKEEDEIE---EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ + G+ ++ D + +++E+E+ ++E + +EG+
Sbjct: 226 GLHKFVKGDLLQEAIDFAQKEINGDDDEDEDDSDNVMSSDDENAPVATNANATTDQEGDI 285
Query: 220 EEE 222
E
Sbjct: 286 HLE 288
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 35.5 bits (82), Expect = 0.007
Identities = 28/172 (16%), Positives = 48/172 (27%), Gaps = 35/172 (20%)
Query: 46 NIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD------------HYAPQYLI 92
+ LD+G G G+ S+ L +G D V D
Sbjct: 29 KVVKPGKTLDLGCGNGRNSLYLAANGYD-------VDAWDKNAMSIANVERIKSIENLDN 81
Query: 93 LEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152
L + N+ + D I+S + L I +I + KP G +
Sbjct: 82 LHTRVVDLNNLTFDRQYDFILSTVV-LMFLEAKTIPGLIANMQRCTKPGGYNL-IVAAMD 139
Query: 153 SAPSYSP-------------EIFKFWENIAGEEEKKEEDEIEEEENEEEEEV 191
+A ++ WE + E+ E + N +
Sbjct: 140 TADYPCTVGFPFAFKEGELRRYYEGWERVKYNEDVGELHRTDANGNRIKLRF 191
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 35.9 bits (83), Expect = 0.008
Identities = 29/203 (14%), Positives = 57/203 (28%), Gaps = 24/203 (11%)
Query: 1 MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGT 60
M + +K + Y D + K + ++ Y ++ +LD+G GT
Sbjct: 1 MSLSEIKRKFDAVS-GKY-DEQRRKFIPC---FDDFYGVSVSIASVDTENPDILDLGAGT 55
Query: 61 GKSILLQGHGVDHHSFCTKVHPLD----------HYAPQYLILEVIQNKIENVELPEKVD 110
G + +D + L ++ I+ + EK D
Sbjct: 56 GLLSAF----LMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYD 111
Query: 111 IIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCILHSAPSYSPEIFKFWENI 168
++VS + H D + LK G+ + W
Sbjct: 112 MVVS---ALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQY 168
Query: 169 AGEEEKKEEDEIEEEENEEEEEV 191
EE+ E + ++
Sbjct: 169 VENSGLTEEEIAAGYERSKLDKD 191
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 35.7 bits (82), Expect = 0.009
Identities = 20/175 (11%), Positives = 49/175 (28%), Gaps = 15/175 (8%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGVDHHSF--------CTKVHPLDHYAPQYLILEVIQNK 99
VL++ G G+ + G + + + + A ++Q
Sbjct: 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGD 141
Query: 100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSP 159
+ L ++ +V L E+ + + + L+P G L S
Sbjct: 142 MSAFALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKF------LLSLAMSEA 195
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
+ E + + + EE+++ +E + +
Sbjct: 196 AESEPLERKQELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRR 250
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 35.3 bits (81), Expect = 0.010
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGVD 72
L++G GTG+ ++ L G
Sbjct: 39 EEPVFLELGVGTGRIALPLIARGYR 63
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 35.1 bits (81), Expect = 0.012
Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 21/177 (11%)
Query: 49 AGKTVLDVGTGTGK-SILL-QGH---GVDHH----SFCTKVHPLDHYAPQYLILEVIQNK 99
GK + D+G GTG ++LL + GVD + ++
Sbjct: 33 PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQE-----KAMETNRHVDFWVQD 87
Query: 100 IENVELPEKVDIIVSEWMGF-YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYS 158
+ +ELPE VD I YL E+ + + + L G + L S
Sbjct: 88 MRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKL------LFDVHSPY 141
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE 215
F ++ + EE V + E E+ DE +
Sbjct: 142 KMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQ 198
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 34.8 bits (80), Expect = 0.016
Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 31/186 (16%)
Query: 3 MEVVKDHDEEEYF---ESYTDL--EVHKLMLDDTVRNEAYRAA---ICDNPNIFAGKTVL 54
M ++++ + ++ F YTD +V++ + + + A I + + VL
Sbjct: 1 MTLIENLNSDKTFLENNQYTDEGVKVYEFIFGENYISSGGLEATKKILSDIELNENSKVL 60
Query: 55 DVGTGTGKSILL-------QGHGVD----HHSFCTKVHPLDHYAPQYLILEVIQNKIENV 103
D+G+G G + HG+D + + ++ + N I
Sbjct: 61 DIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNK------IIFEANDILTK 114
Query: 104 ELP-EKVDIIVSEWMGFYLLHESMIDSVIFARDKF--LKPEGVMYPYKCILHSAPSYSPE 160
E P D+I S +L S+ + + + LKP G + ++ E
Sbjct: 115 EFPENNFDLIYSRDA---ILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE 171
Query: 161 IFKFWE 166
++ +
Sbjct: 172 FKEYVK 177
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 34.8 bits (80), Expect = 0.017
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 12/56 (21%)
Query: 10 DEEEYF----ESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
++ Y ++H + A + + + VLDV TG G
Sbjct: 2 GSDKIHHHHHHMYVTSQIH--------AKGSDLAKLMQIAALKGNEEVLDVATGGG 49
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 35.3 bits (81), Expect = 0.017
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK------EEGENEEEEE 224
K D+I+E+ +E EEV N E E E++K+ D + K + E+ +
Sbjct: 110 LVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQM 169
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ + E E + ++E +
Sbjct: 170 RRLATALQKEIGERTHAETVMVKEYRDK 197
Score = 33.4 bits (76), Expect = 0.062
Identities = 14/76 (18%), Positives = 34/76 (44%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
E I+ + E E+E + + + + ++ ++K E+E+ E E+ +K+ +
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Query: 237 EEEEEVLIKLEEEEEN 252
+ K+ EE+
Sbjct: 152 NKAVTSYNKILTEEDL 167
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 34.5 bits (79), Expect = 0.018
Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 30/221 (13%)
Query: 47 IFAGKTVLDVGTGTGK--SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKI---- 100
+ G +LDVG+ L++ + V A + + ++ KI
Sbjct: 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72
Query: 101 ----ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS 156
E ++V +I MG L I ++ L + IL P+
Sbjct: 73 ANGLAAFEETDQVSVITIAGMGGRL-----IARILEEGLGKLANVE-----RLIL--QPN 120
Query: 157 YSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK------KEED 210
+ + W G + E I EE + E + + + + + + KE
Sbjct: 121 NREDDLRIWLQDHGFQIVAE--SILEEAGKFYEILVVEAGQMKLSASDVRFGPFLSKEVS 178
Query: 211 EIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ ++ + E E+ E + Q + EE + ++ K++ +E
Sbjct: 179 PVFVQKWQKEAEKLEFALGQIPEKNLEERQVLVDKIQAIKE 219
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 34.7 bits (79), Expect = 0.019
Identities = 8/59 (13%), Positives = 20/59 (33%)
Query: 183 EENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
++ + V ++ EE +E+++EE + + E E +
Sbjct: 195 PGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAA 253
Score = 33.2 bits (75), Expect = 0.055
Identities = 10/63 (15%), Positives = 19/63 (30%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
V Q + + + + ++ E +E+EEEE + E
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTW 243
Query: 249 EEE 251
E
Sbjct: 244 GGE 246
Score = 32.8 bits (74), Expect = 0.079
Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
W+ + ++ +E +E+E EE V + E + E + +
Sbjct: 199 WDVMVDLFFYRDPEEAKEQEEEEAALVA----PDYGAVAEYAAPAADTWGGEWGTDAAAQ 254
Query: 225 EEVVKQKKNEEEEEEE 240
+ + +
Sbjct: 255 PAAIPAQAGADWTAAP 270
Score = 30.1 bits (67), Expect = 0.65
Identities = 6/62 (9%), Positives = 15/62 (24%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
+ EE +E+EE + + E + + + +
Sbjct: 210 DPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAA 269
Query: 241 EV 242
Sbjct: 270 PA 271
Score = 29.4 bits (65), Expect = 1.2
Identities = 7/69 (10%), Positives = 18/69 (26%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE K++E+E + V + + E + + + +
Sbjct: 212 EEAKEQEEEEAALVAPDYGAVAEYAAPAADTWGGEWGTDAAAQPAAIPAQAGADWTAAPA 271
Query: 231 KKNEEEEEE 239
+
Sbjct: 272 PAAGGWDTA 280
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 34.4 bits (79), Expect = 0.021
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 20/106 (18%)
Query: 50 GKTVLDVGTGTGK-SILL--QGH---GVDHHSFCTKVHP--LDHYAPQYLILEVIQNKIE 101
G +LD G G G+ L QGH G D + P +D+ + + +
Sbjct: 47 GAKILDAGCGQGRIGGYLSKQGHDVLGTD-------LDPILIDYAKQDFPEARWVVGDLS 99
Query: 102 NVELPE-KVDIIVSEWMGFYLLHESMIDSVI--FARDKFLKPEGVM 144
++ E D+IVS L E + + R L +G
Sbjct: 100 VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHR--ALGADGRA 143
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 34.6 bits (79), Expect = 0.021
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 33 RNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
R A+R AI + + G+ +L++G G G
Sbjct: 27 RQTAHRLAIAEAWQVKPGEKILEIGCGQG 55
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 35.1 bits (80), Expect = 0.021
Identities = 19/103 (18%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 150 ILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
ILHS F+ + + K+ ++ + ++ Q +E+++ +
Sbjct: 532 ILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVD 591
Query: 210 DEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E++ N + EEE +++K +E+E ++E++EE
Sbjct: 592 SD-EEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEEL 633
Score = 30.9 bits (69), Expect = 0.39
Identities = 8/79 (10%), Positives = 30/79 (37%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ ++ +E++ + +EE+ +E + + +E+E
Sbjct: 561 DAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENL 620
Query: 226 EVVKQKKNEEEEEEEEVLI 244
+ + ++EE ++ + +
Sbjct: 621 SAKRSRIEQKEELDDVIAL 639
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 34.7 bits (80), Expect = 0.024
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
N EE+ ++ E E+ + + EE +EEE+ EE+E E + E E EE
Sbjct: 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEE 370
Query: 225 EEVVKQKKNE 234
E+ K+ +E
Sbjct: 371 EKEDKELADE 380
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 34.0 bits (78), Expect = 0.024
Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 27/141 (19%)
Query: 16 ESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHH 74
L + +D R +LDVG+GTG+ + L G
Sbjct: 14 FDAEALLGTVISAEDPDR--VLIEPWATGV----DGVILDVGSGTGRWTGHLASLGHQ-- 65
Query: 75 SFCTKVHPLD------HYAPQYLI-LEVIQNKIENVELPEK-VDIIVSEWMGFYLLHESM 126
+ L+ A Q + I ++ K +++ W +
Sbjct: 66 -----IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLA-WYSLIHMGPGE 119
Query: 127 IDSVI--FARDKFLKPEGVMY 145
+ + ++ G +
Sbjct: 120 LPDALVALRM--AVEDGGGLL 138
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 33.9 bits (77), Expect = 0.029
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 13/82 (15%)
Query: 3 MEVVKDHDE------EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDV 56
+ +K D E+Y+ L D V ++D
Sbjct: 5 LSAIKKPDINVADAWEQYWNKTLVNSTPVLW-DANVERAVVVDLPRFELLFNPELPLIDF 63
Query: 57 GTGTGK-SILLQGH-----GVD 72
G G + L G+D
Sbjct: 64 ACGNGTQTKFLSQFFPRVIGLD 85
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
initiative, RSGI, structural genomics, ligase; 2.30A
{Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Length = 592
Score = 34.2 bits (79), Expect = 0.033
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK-EEGENEEEEEEE 226
+ + +E+ + + +++ E E + E+ + E GE EE
Sbjct: 160 LFALRHYGLTWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGELREEVNRI 219
Query: 227 VVKQKK 232
++ Q
Sbjct: 220 LLAQMA 225
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 34.1 bits (77), Expect = 0.036
Identities = 7/61 (11%), Positives = 33/61 (54%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ A + +E+ + EE E +V ++ ++++++ +++ + + E ++++++
Sbjct: 277 QVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDD 336
Query: 226 E 226
+
Sbjct: 337 D 337
Score = 33.3 bits (75), Expect = 0.056
Identities = 14/85 (16%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
PE+ + A + + +I++EE EE + + EE +++ ++ E +
Sbjct: 263 DPEVVPDLVSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASEDDAD 322
Query: 218 ENEEEEEEEVVKQKKNEEEEEEEEV 242
++ EE + ++++++E+
Sbjct: 323 ADDAAEEAD-------DDDDDDEDA 340
Score = 31.4 bits (70), Expect = 0.30
Identities = 12/81 (14%), Positives = 36/81 (44%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E+ + ++ + + + + + + EE EE + E ++ EE ++++++
Sbjct: 259 AAIEDPEVVPDLVSKADAQVRALASQIDDEEALPEELQGVEADVATEEPTDDQDDDTASE 318
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
++ EE + +E+
Sbjct: 319 DDADADDAAEEADDDDDDDED 339
Score = 29.0 bits (64), Expect = 1.3
Identities = 5/47 (10%), Positives = 20/47 (42%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
E E ++ +++ + + ++ EE + ++D+ + +
Sbjct: 297 GVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGDA 343
Score = 29.0 bits (64), Expect = 1.6
Identities = 6/47 (12%), Positives = 27/47 (57%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGE 218
+ + + EE ++++++ + + + ++ EE ++D+ +++ G+
Sbjct: 296 QGVEADVATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDEDAGD 342
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 33.7 bits (77), Expect = 0.037
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 38 RAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVD 72
AI + N+ G + D+G GTG S+ L G+
Sbjct: 23 VNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF 58
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 34.2 bits (79), Expect = 0.037
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE--------- 216
E A + + K ED+ +E+ + E+++ + EEEEEE E
Sbjct: 27 EAAAYQPKPKVEDDEDEDIDALIEDLESHDGHDAEEEEEEATPGGGRVVPEDMLQTDTRV 86
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
G EE + K N+ +EE+E +K
Sbjct: 87 GLTSEEVVQRRRKYGLNQMKEEKENHFLKF 116
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 33.6 bits (77), Expect = 0.038
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 14/105 (13%)
Query: 49 AGKTVLDVGTGTGKSILLQG--------HGVDHHSFCTK-VHPLDHYAPQYLILEVIQNK 99
A L++G G + +D + + ++ +
Sbjct: 51 AVSNGLEIGCAAG--AFTEKLAPHCKRLTVID---VMPRAIGRACQRTKRWSHISWAATD 105
Query: 100 IENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVM 144
I E D+IV + +YL + + + I K L P G +
Sbjct: 106 ILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHL 150
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 33.7 bits (78), Expect = 0.051
Identities = 15/98 (15%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 159 PEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEE-EEEEKKEEDEIEKEEG 217
P + + + + ++K+ ++ +E E+ ++ + + E+ E+ +K +++ +E
Sbjct: 394 PNLKELEQKLDEVRKEKDA-AVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENS 452
Query: 218 ENEEEEEEEVVKQ------KKNEEEEEEEEVLIKLEEE 249
E ++ VV K + E ++ L+ +E
Sbjct: 453 EVTVDDIAMVVSSWTGVPVSKIAQTETDK--LLNMENI 488
Score = 31.4 bits (72), Expect = 0.34
Identities = 14/91 (15%), Positives = 36/91 (39%), Gaps = 17/91 (18%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
K+ E +++E E++ V+ +E E+ D ++ + E+ ++ KQ
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQ------SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQ 447
Query: 231 KKNEEEEEEEEV-----------LIKLEEEE 250
+ E +++ + K+ + E
Sbjct: 448 GQENSEVTVDDIAMVVSSWTGVPVSKIAQTE 478
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 33.3 bits (77), Expect = 0.071
Identities = 10/73 (13%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
K+ E +++E E++ V+ ++E E+ + E + ++ + ++ +E+ ++
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQ---SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQE 450
Query: 231 KKNEEEEEEEEVL 243
++ V+
Sbjct: 451 NSEVTVDDIAMVV 463
Score = 28.3 bits (64), Expect = 2.4
Identities = 9/65 (13%), Positives = 32/65 (49%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
+E++QK ++ +E++ + ++ + + E+ E V+ K +E++ + +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Query: 246 LEEEE 250
+ ++
Sbjct: 454 VTVDD 458
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 32.6 bits (73), Expect = 0.086
Identities = 19/149 (12%), Positives = 39/149 (26%), Gaps = 13/149 (8%)
Query: 44 NPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIEN 102
P F G+ VLD+G G ++ + + +I + +N
Sbjct: 41 KPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDS-----------RLIHSARQN 89
Query: 103 VELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCI-LHSAPSYSPEI 161
+ ++ + + R + P + I P +
Sbjct: 90 IRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADT 149
Query: 162 FKFWENIAGEEEKKEEDEIEEEENEEEEE 190
F N+ D + E + E
Sbjct: 150 SVFPNNVVFVTGNYVLDRDDLVEAQTPEY 178
>3av0_A DNA double-strand break repair protein MRE11; DNA repair,
calcineurin-like phosphoesterase, ABC transporte
domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus
jannaschii} PDB: 3auz_A*
Length = 386
Score = 32.9 bits (75), Expect = 0.087
Identities = 8/75 (10%), Positives = 23/75 (30%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
I E + + ++ + V + + + E E+ + + + +
Sbjct: 299 KIKREFKPWFDTLKDKILINKAIIVDDEFIDMPDNVDIESLNIKELLVDYANRQGIDGDL 358
Query: 227 VVKQKKNEEEEEEEE 241
V+ K E +
Sbjct: 359 VLSLYKALLNNENWK 373
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A
{Lactobacillus delbrueckii subsp}
Length = 205
Score = 32.2 bits (74), Expect = 0.088
Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
Query: 46 NIFAGKTVLDVGTGTGKSIL 65
+ TV DVGTG+G IL
Sbjct: 57 AMVKPLTVADVGTGSG--IL 74
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 31.9 bits (73), Expect = 0.096
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 23/88 (26%)
Query: 46 NIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVE 104
++D G G G L TK++ +D + L+ ++ K ++V
Sbjct: 14 FEGKKGVIVDYGCGNGFYCKYLLEFA-------TKLYCID---INVIALKEVKEKFDSVI 63
Query: 105 -------LP-EKVDIIVSEWMGFYLLHE 124
+P VD I+ H+
Sbjct: 64 TLSDPKEIPDNSVDFILF----ANSFHD 87
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.8 bits (75), Expect = 0.10
Identities = 8/80 (10%), Positives = 29/80 (36%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+E+ + +EE ++ + ++E + ++ E + +E V +
Sbjct: 139 GAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSR 198
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+ +++E ++
Sbjct: 199 LDGVALYRFPRRVRVEYVKK 218
Score = 28.2 bits (63), Expect = 3.1
Identities = 6/81 (7%), Positives = 21/81 (25%), Gaps = 1/81 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE-EVVKQ 230
E + + + + + + + +E ++ E VK+
Sbjct: 159 RELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEYVKK 218
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ + K +
Sbjct: 219 ERAGLRLPLAAWVEKEAYKPG 239
Score = 27.0 bits (60), Expect = 7.2
Identities = 9/63 (14%), Positives = 16/63 (25%), Gaps = 1/63 (1%)
Query: 171 EEEKKEEDEIEEE-ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
EE ++ +E + K +E + +E V
Sbjct: 156 EEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVALYRFPRRVRVEY 215
Query: 230 QKK 232
KK
Sbjct: 216 VKK 218
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 32.6 bits (74), Expect = 0.11
Identities = 14/77 (18%), Positives = 32/77 (41%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E N + + +++ EE KK+ + +K +G + E+E + + +
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 236 EEEEEEVLIKLEEEEEN 252
E + LE++E +
Sbjct: 66 EVARQLERSALEDKERD 82
Score = 29.9 bits (67), Expect = 0.79
Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKE---------E 216
E A E+++++ED+ + + + + K+KK K+++ + + + + +
Sbjct: 72 ERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGVFPK 131
Query: 217 GENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEE 250
G+ E + + EE++ L + EE
Sbjct: 132 GQECEYPPTQDGRTAAWRTTSEEKKALDQASEEI 165
Score = 27.2 bits (60), Expect = 6.9
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
+ + E ++ + EE++ ++ E+
Sbjct: 131 KGQECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWND 168
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 32.2 bits (73), Expect = 0.12
Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 20/177 (11%)
Query: 27 MLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILL--QGH---GVDHHSFCTKV 80
A + D I + VLD+G G G+ S+ L G+ DH+
Sbjct: 98 YFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIA- 156
Query: 81 HPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKP 140
+ + L + I + E D IVS + F L+ + S+I +
Sbjct: 157 FLNETKEKENLNISTALYDINAANIQENYDFIVSTVV-FMFLNRERVPSIIKNMKEHTNV 215
Query: 141 EGVMYPYKCILHSAPSYSP------------EIFKFWENIAGEEEKKEEDEIEEEEN 185
G + E +K WE + E E + +E N
Sbjct: 216 GGYNLIVAAMSTDDVPCPLPFSFTFAENELKEYYKDWEFLEYNENMGELHKTDENGN 272
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 32.1 bits (73), Expect = 0.12
Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 27/202 (13%)
Query: 50 GKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD------HYAPQYLILEVIQNKIEN 102
VLD+G GTGK S+ LQ G + V +D A + + V++ K E+
Sbjct: 55 PCRVLDLGGGTGKWSLFLQERGFE-------VVLVDPSKEMLEVAREKGVKNVVEAKAED 107
Query: 103 VELP-EKVDIIVSEWMGFYLLHESMIDSVI--FARDKFLKPEGVMYPYKCILHSAPSYSP 159
+ P + +++ +G L + D R L P+G+ ++ + ++
Sbjct: 108 LPFPSGAFEAVLA--LGDVLSYVENKDKAFSEIRR--VLVPDGL------LIATVDNFYT 157
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+ + E A ++ + K E+ + E E +I
Sbjct: 158 FLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFETVDIRGIGVME 217
Query: 220 EEEEEEEVVKQKKNEEEEEEEE 241
+E ++ E+E
Sbjct: 218 YPDERISEREETIFRLEQELSR 239
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 32.6 bits (74), Expect = 0.15
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEE-----EEEEKKEEDEIEKEEGENEEEEEEE 226
+ +E + + + + K + + E+++E + + KEE NE+ +
Sbjct: 923 GNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKEENLNEDAAKRY 982
Query: 227 VVKQKKNEEEEEEEEVLIKL 246
+ K E E L +
Sbjct: 983 IRTSLKREYATENGTELNET 1002
Score = 32.2 bits (73), Expect = 0.15
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK---EEGENEEEEEEEVVKQK 231
E + + + E EEVK+ +E D I++ ++ ++ +
Sbjct: 898 FEHNRQNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFA 957
Query: 232 KNEEEEEEEEVLIKLEEEEE 251
+ E++ E E ++ + E+
Sbjct: 958 QREQQREAEALIKEENLNED 977
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 32.2 bits (73), Expect = 0.15
Identities = 16/78 (20%), Positives = 30/78 (38%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKN 233
KK + + + + +E E + K E E E ++ ++ + + E E E
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPL 61
Query: 234 EEEEEEEEVLIKLEEEEE 251
+ E E L+ E E
Sbjct: 62 DLEGPLEADLLPEEGLLE 79
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 31.7 bits (71), Expect = 0.19
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ + + K + + + EEE K K+ E E E+ E EK + + E E
Sbjct: 300 YNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAE 359
Query: 225 ----EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
E +K+ + +E EE + E+E+ N
Sbjct: 360 LQRRHEQMKKNLEAQHKELEEKRRQFEDEKAN 391
Score = 30.6 bits (68), Expect = 0.54
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 171 EEEKKEEDEIEEE-ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEE---EEE 226
+ KK E E+E+ E + +E+V++ K+ E E + ++ + +E + E EE+ E+E
Sbjct: 329 AKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDE 388
Query: 227 VVKQKKNEEEEEEEEVLIKLEEEEE 251
+ + E++ LE+ ++
Sbjct: 389 KANWEAQQRILEQQNSSRTLEKNKK 413
Score = 29.8 bits (66), Expect = 0.97
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEE----EEEEEKKEEDEIEKEEGENEEEEEEE 226
EEE++E ++ E E+V + K KE+ + E E + E K+ E + +E EE
Sbjct: 321 EEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEE 380
Query: 227 VVKQKKNEEEEEEEE 241
+Q ++E+ E +
Sbjct: 381 KRRQFEDEKANWEAQ 395
Score = 27.1 bits (59), Expect = 5.9
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+EK ++ + E E + E +K + + +E EEK+ + E EK E ++ E+ +
Sbjct: 347 KEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSR 406
Query: 232 KNEEEEEE 239
E+ +++
Sbjct: 407 TLEKNKKK 414
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 31.6 bits (72), Expect = 0.20
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 15/74 (20%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD-------HYAPQYLILEVIQNKI 100
G+ +LD+G GTG+ + + G + V D Y L
Sbjct: 57 PGEFILDLGCGTGQLTEKIAQSGAE-------VLGTDNAATMIEKARQNYPHLHFDVADA 109
Query: 101 ENVELPEKVDIIVS 114
N + + +D + S
Sbjct: 110 RNFRVDKPLDAVFS 123
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 31.9 bits (73), Expect = 0.20
Identities = 9/68 (13%), Positives = 22/68 (32%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVL 243
E E + + E+ E + + + + EN + E+ + E + +
Sbjct: 151 ETTMNPEHRALLQVKLEDAIEADQTFEMLMGDVVENRRQFIEDNAVYANLDFAELPQSRI 210
Query: 244 IKLEEEEE 251
+ E
Sbjct: 211 NERNITSE 218
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 31.4 bits (71), Expect = 0.21
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)
Query: 3 MEVVKDHDE-EEYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTG 59
M H+ E+ ++S + + + M D R+ + VLDVG G
Sbjct: 7 MTKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFF---EQYVKKEAEVLDVGCG 63
Query: 60 TGK-SILLQGHG 70
G + L G
Sbjct: 64 DGYGTYKLSRTG 75
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain
12444, SGX, transferase; 2.50A {Novosphingobium
aromaticivorans}
Length = 482
Score = 31.7 bits (72), Expect = 0.24
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 15/80 (18%)
Query: 53 VLDVGTGTGKSILLQGHG--VDHHSFCTKVHPLDHYA---PQYL---ILEVIQNKIENVE 104
V+D+G K L G +D + +D +L+V+ +
Sbjct: 10 VIDLGKTLSKVSLWDLDGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYAD--- 66
Query: 105 LPEKVD-IIVSEWM-GFYLL 122
V I+ G L
Sbjct: 67 --HPVTTIVPVGHGAGIAAL 84
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 31.6 bits (72), Expect = 0.24
Identities = 8/78 (10%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI--EKEEGENEEEEEEEV--VKQ 230
E+ + + ++ + E + N + + V ++
Sbjct: 128 SAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRN 187
Query: 231 KKNEEEEEEEEVLIKLEE 248
+ + E++ ++ KLE
Sbjct: 188 ELQKLEDDAKDNQQKLEA 205
Score = 26.6 bits (59), Expect = 9.7
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 171 EEEKKEEDEIEEEENEE----EEEVKQKKNKEEEEE--EEEKKEEDEIEKEEGENEEEEE 224
+ E N VK + + + + +E++K E + ++ ++
Sbjct: 142 KNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQ 201
Query: 225 E 225
+
Sbjct: 202 K 202
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.5 bits (68), Expect = 0.31
Identities = 10/61 (16%), Positives = 25/61 (40%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
EE ++ + E E ++ K+++ + EKK D + + ++ E ++
Sbjct: 90 EEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Query: 232 K 232
Sbjct: 150 P 150
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 30.8 bits (69), Expect = 0.35
Identities = 5/23 (21%), Positives = 7/23 (30%), Gaps = 1/23 (4%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHG 70
VL+ G G G +
Sbjct: 48 PQTRVLEAGCGHGPDAARFGPQA 70
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 30.5 bits (69), Expect = 0.36
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGV 71
G+++L+VG GTG L
Sbjct: 36 PGESLLEVGAGTGYWLRRLPYPQK 59
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.7 bits (68), Expect = 0.36
Identities = 13/76 (17%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE--EEEEEVVKQKKN 233
+ +E E+ + +Q+K +E + + E++ EK + + EE + + E V++ K
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Query: 234 EEEEEEEEVLIKLEEE 249
++ + + +
Sbjct: 152 NNRIADKAFYQQPDAD 167
Score = 28.3 bits (62), Expect = 2.0
Identities = 9/56 (16%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEE---KKEEDEIEKEEGENEEEEEE 225
+ +EE +E + +V +++ +E+ +++ E +++ +++EK + N ++
Sbjct: 104 KWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Score = 27.6 bits (60), Expect = 3.3
Identities = 11/86 (12%), Positives = 28/86 (32%)
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
+ E++ E + + + +E E + +EE
Sbjct: 52 GGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRK 111
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEE 238
+E + + E+ ++K ++ EE
Sbjct: 112 RLQELDAASKVMEQEWREKAKKDLEE 137
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 31.0 bits (69), Expect = 0.37
Identities = 18/86 (20%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEE-----EEKKEEDEIEKEEGENEEEEEE 225
E + +EE+ + + ++ + ++ E + EE K + E+++ E+E ++
Sbjct: 359 LEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRAKQ 418
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E V + + E E ++ E EE E+
Sbjct: 419 EEVSRIQQEVELKDSETRRLQEEVED 444
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 30.7 bits (70), Expect = 0.39
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 46 NIFAGKTVLDVGTGTGKSIL 65
++ G VLD+GTG+G +L
Sbjct: 117 HLRPGDKVLDLGTGSG--VL 134
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 30.8 bits (69), Expect = 0.40
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
+ + ++ ++ E E + E E E + + D I E + E + K +
Sbjct: 128 DHELRMLKVPYIKSMENIEGGIQLELEVGEAEMKNRVPDRILT-LLEEKIEAAQYGAKAE 186
Query: 232 KNEEEEEEEEVLIKLEEEE 250
+ E + +E+
Sbjct: 187 HWNLLWQREPMEHPFKEDP 205
Score = 27.0 bits (59), Expect = 6.9
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQK-KNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+ + E I+ E E E+K + ++ EE+ + K E N + E +
Sbjct: 140 KSMENIEGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQYGAKAEHWNLLWQREPMEH 199
Query: 230 QKKNEEEEEEEEVL 243
K + + +
Sbjct: 200 PFKEDPTQAMMKEG 213
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 30.2 bits (69), Expect = 0.42
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGKSILL---------QGHGVD 72
AI + +G V+DVGTG+G I + VD
Sbjct: 20 EAIRFLKRMPSGTRVIDVGTGSG-CIAVSIALACPGVSVTAVD 61
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 30.3 bits (68), Expect = 0.44
Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 22/147 (14%)
Query: 8 DHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG------ 61
+ + Y E R P + VLD+G G G
Sbjct: 4 SGTDIHTSDYYFLFEEKF----RGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELC 59
Query: 62 KSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPE-KVDIIVSEWMGFY 120
K ++ GVD + K + + LP+ +D ++ + +
Sbjct: 60 KEEGIESIGVDINEDMIK------FCEGKFNVVKSDAIEYLKSLPDKYLDGVM---ISHF 110
Query: 121 L--LHESMIDSVIFARDKFLKPEGVMY 145
+ L + ++ +K +
Sbjct: 111 VEHLDPERLFELLSLCYSKMKYSSYIV 137
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 30.4 bits (68), Expect = 0.49
Identities = 0/83 (0%), Positives = 0/83 (0%), Gaps = 1/83 (1%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
+ E+ K + ++ K+ + + + E
Sbjct: 112 RPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQA 171
Query: 229 KQKKNEE-EEEEEEVLIKLEEEE 250
K
Sbjct: 172 VYNKLTGK 194
Score = 27.8 bits (61), Expect = 3.5
Identities = 2/47 (4%), Positives = 13/47 (27%)
Query: 205 EKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+ ++ +++++ E + V + +
Sbjct: 103 SRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKI 149
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 30.3 bits (69), Expect = 0.54
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + + DE ++ N ++E+ + K KE+ ++ +KE+ EK+E +E E ++ ++
Sbjct: 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103
Query: 231 K 231
K
Sbjct: 104 K 104
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 30.6 bits (68), Expect = 0.56
Identities = 18/122 (14%), Positives = 29/122 (23%), Gaps = 17/122 (13%)
Query: 38 RAAICDNPNIFAGKTVLDVGTGTGK--SILLQGH-------GVDHHSFCTKV------HP 82
+ + T++D G G+G LL GVD
Sbjct: 710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769
Query: 83 LDHYAPQYLILEVIQNKIENVEL-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPE 141
L+ A + I + VDI + E P+
Sbjct: 770 LNKEACNVKSATLYDGSILEFDSRLHDVDIGTC-LEVIEHMEEDQACEFGEKVLSLFHPK 828
Query: 142 GV 143
+
Sbjct: 829 LL 830
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 30.3 bits (67), Expect = 0.61
Identities = 10/79 (12%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEE---EEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E++ E + + +++++ + E + ED +E + + + + K
Sbjct: 24 EKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNETDHK 83
Query: 233 NEEEEEEEEVLIKLEEEEE 251
E E ++ + + +E+
Sbjct: 84 TNENGETDDNIETVMTQEQ 102
Score = 29.1 bits (64), Expect = 1.6
Identities = 10/73 (13%), Positives = 29/73 (39%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
++ E+E + E + + + E++ + + + GE+ E + E + E
Sbjct: 21 DLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNPVDSRNET 80
Query: 239 EEEVLIKLEEEEE 251
+ + E ++
Sbjct: 81 DHKTNENGETDDN 93
>3cra_A Protein MAZG; tandem-repeat domain, hydrolase; 2.10A {Escherichia
coli} PDB: 3crc_A*
Length = 265
Score = 29.8 bits (68), Expect = 0.62
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE 204
W + +K + EE +E E +Q + + EEE
Sbjct: 161 WTTLGPVVDK-----VYEEIDEVMYEARQAVVDQAKLEEE 195
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.8 bits (67), Expect = 0.66
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 46 NIFAGKTVLDVGTGTG 61
A VLD+G G G
Sbjct: 18 ECRAEHRVLDIGAGAG 33
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 29.5 bits (67), Expect = 0.77
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 45 PNIFAGKTVLDVGTGTG--KSILLQGHGVDHHSFCTKVHPLDHYAP 88
++ G +LDVG+G+G + + T++ ++H A
Sbjct: 80 DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAE 125
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 29.6 bits (66), Expect = 0.77
Identities = 27/204 (13%), Positives = 64/204 (31%), Gaps = 27/204 (13%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPE 107
K ++DVG G G ++ + ++ D A I K + + +
Sbjct: 36 ERKLLVDVGCGPGTATLQMAQELKP----FEQIIGSDLSATM--IKTAEVIKEGSPDTYK 89
Query: 108 KVDIIVS-----EWMGFYLLHESMIDSVI-------FARDKF-------LKPEGVMYPYK 148
V +S +++G + + ID + F +KF L+ +G + +
Sbjct: 90 NVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWG 149
Query: 149 CILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
P Y PE + ++ + + +K E + +
Sbjct: 150 YADPIFPDY-PEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSY 208
Query: 209 EDEIEKEEGENEEEEEEEVVKQKK 232
+ + + ++ + +K
Sbjct: 209 FCAEDVRDKVKLHQHTKKPLLIRK 232
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.8 bits (67), Expect = 0.78
Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGKSI--LLQGHGVDHHSFCTKVHPLDHYAPQYLILEVI 96
A + + G +LD+G+G+G+ + + HG+ +D +
Sbjct: 26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGI-------TGTGIDMSSLF---TAQA 75
Query: 97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVI--------------FAR-DKFLKPE 141
+ + E + + E+V I ++ G + D + LKP
Sbjct: 76 KRRAEELGVSERVHFIHNDAAG--YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG 133
Query: 142 GVMYPYKCILHSAPSYSPEIFKFWE 166
G+M + P+ + EI +
Sbjct: 134 GIMLIGEPYWRQLPA-TEEIAQACG 157
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.8 bits (66), Expect = 0.82
Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
E + ++ + E E K E+E E ++ ++ I + + + ++ Q
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIAR------MQAQMQMQMQGG 350
Query: 233 NEEEE 237
+ +
Sbjct: 351 DGDGG 355
Score = 27.5 bits (60), Expect = 4.2
Identities = 6/48 (12%), Positives = 22/48 (45%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
G + + E+ ++ E+E E+++ + + + + + + + G
Sbjct: 308 GRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 27.5 bits (60), Expect = 5.2
Identities = 6/58 (10%), Positives = 21/58 (36%)
Query: 156 SYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
++ E K E+ ++ + E+E E + + + + + + + +
Sbjct: 298 NFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 29.7 bits (66), Expect = 0.84
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 42 CDNP----NIFAGKTVLDVGTGTGKSILL 66
C + G TVLD+G GTG+ + L
Sbjct: 72 CGSTLPADGSLEGATVLDLGCGTGRDVYL 100
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 29.6 bits (66), Expect = 0.86
Identities = 10/76 (13%), Positives = 28/76 (36%)
Query: 149 CILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
++ S PS SP+ ++ ++ + + I ++ E V +
Sbjct: 130 GVVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTIC 189
Query: 209 EDEIEKEEGENEEEEE 224
++ + + + E+ E
Sbjct: 190 DELKIQSQNDREKLAE 205
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 29.1 bits (65), Expect = 0.87
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEE--EEEEKKEEDEIEKEEGENEEEE 223
E I +E + E + +E + E VK++ ++ + + E+ E + E
Sbjct: 4 EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAG 63
Query: 224 EEEVVKQKKNEEEEEEEEVLIKLEEE 249
E V + E EEV ++ E
Sbjct: 64 ELLVATARTQARGEVLEEVRRRVREA 89
Score = 28.3 bits (63), Expect = 2.0
Identities = 10/58 (17%), Positives = 24/58 (41%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKK 232
K E + +E E + + Q+ + E + E +E+ + + E E + ++
Sbjct: 2 KLEAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRA 59
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 0.91
Identities = 5/42 (11%), Positives = 12/42 (28%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
N +++ K +E K+ + + K
Sbjct: 216 NGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALA 257
Score = 28.9 bits (64), Expect = 1.7
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
+ +E +E ++ +E + E
Sbjct: 221 LIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 27.7 bits (61), Expect = 3.5
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ + +E VK+ K + E E N
Sbjct: 221 LIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEAN 260
Score = 27.3 bits (60), Expect = 4.5
Identities = 5/40 (12%), Positives = 14/40 (35%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
++ + + +E +E + K E + E +
Sbjct: 221 LIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEAN 260
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 29.5 bits (66), Expect = 0.93
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 16/80 (20%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD-----------HYAPQYLILEVI 96
++D G G G ++L + K +D + E +
Sbjct: 22 KPVHIVDYGCGYGYLGLVLMPLLPEGS----KYTGIDSGETLLAEARELFRLLPYDSEFL 77
Query: 97 QNKIENVELPEKVDIIVSEW 116
+ +EL +K DI +
Sbjct: 78 EGDATEIELNDKYDIAICHA 97
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 28.5 bits (64), Expect = 1.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
++ E K K+E E + + + E + EEEEEE
Sbjct: 93 KHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 29.7 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 209 EDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+EKE EEE+++E K ++ ++E++++ L +++EEEE
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEE 252
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ + E E ++EEE ++ + + + +E+ E++ + KE E E ++
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDD 440
Score = 28.3 bits (63), Expect = 2.8
Identities = 12/63 (19%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E F ++ + +++ + +EEEE ++ + E + +E+++ E ++ K + +
Sbjct: 376 EFFGIFDQFLQAVSEAKQENENMRKKKEEEE---RRARMEAQLKEQRERERKMRKAKENS 432
Query: 220 EEE 222
EE
Sbjct: 433 EES 435
Score = 27.2 bits (60), Expect = 6.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
+E + + K+EEEE + E E+ E E + K K+N EE E + L+
Sbjct: 393 QENENMRKKKEEEERRARMEAQLKEQRERERKMR------KAKENSEESGEFDDLVS 443
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 28.8 bits (64), Expect = 1.4
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 140 PEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEE 199
V C A S + W +A E + E E ++ ++ EE
Sbjct: 187 LRYVDIAIPCNNKGAHS----VGLMWWMLAREVLRMRGTISREHPWEVMPDLYFYRDPEE 242
Query: 200 EEEEEEKKEE 209
E+EE+ E
Sbjct: 243 IEKEEQAAAE 252
Score = 28.1 bits (62), Expect = 2.5
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
E EV + EE EK+E+ EK
Sbjct: 220 GTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253
Score = 26.9 bits (59), Expect = 6.1
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEK--EEGENEEEEEEE 226
EV + + E E + + EE E EE+ E
Sbjct: 213 REVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAE 252
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 18/81 (22%)
Query: 1 MDMEVVKDHDEE--EYFESYTD-----LEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTV 53
M + + H FE + + VH+ ++ +
Sbjct: 1 MGSDKIHHHHHHMWHIFERFVNEYERWFLVHRFAYLSELQAVK---------CLLPEGRG 51
Query: 54 LDVGTGTGK--SILLQGHGVD 72
+++G GTG+ L GV+
Sbjct: 52 VEIGVGTGRFAVPLKIKIGVE 72
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 28.5 bits (63), Expect = 1.6
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 173 EKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
K + D+ ++ ++ E ++ K KE + EE+ + +KEE +EEE K
Sbjct: 143 HKLKADKARKKLLADQAEARRSKTKEARKRREERLQA---KKEEIIKTLSKEEETKK 196
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 28.7 bits (64), Expect = 1.7
Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 30/190 (15%)
Query: 50 GKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD-----------HYAPQYLILEVIQ 97
VLD+ G G S LL+ +G + V +D + + +E I
Sbjct: 39 RGKVLDLACGVGGFSFLLEDYGFE-------VVGVDISEDMIRKAREYAKSRESNVEFIV 91
Query: 98 NKIENVELPEKV-DIIVSEWMGFYLLHESMIDSVIFARD--KFLKPEGVMYPYKCILHSA 154
+ +K D ++ + + ++ + LKP G
Sbjct: 92 GDARKLSFEDKTFDYVIFIDSIVHFEPL---ELNQVFKEVRRVLKPSGKFI---MYFTDL 145
Query: 155 PSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEK 214
P + + + G++ + ++EE E K +++ K E+
Sbjct: 146 RELLPRLKESL--VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLA 203
Query: 215 EEGENEEEEE 224
+ +E EE
Sbjct: 204 KLYFTKEAEE 213
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 28.7 bits (63), Expect = 1.7
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
+E+E+ E + + EE + E+D + ++ E++
Sbjct: 189 EEMEQAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQDLYWSEDD 237
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication,
transcription, hydrolase, replication,transcription,
hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP:
d.136.1.3 d.136.1.3
Length = 544
Score = 28.8 bits (63), Expect = 1.8
Identities = 6/67 (8%), Positives = 17/67 (25%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
E K K + E+ + + E + + +
Sbjct: 2 SRETNFNGTKRKRSDVAEKVAQRWKSVRYSAEMENMAPVNSNNDSDDCVIVSESKIIDLT 61
Query: 246 LEEEEEN 252
+E++ +
Sbjct: 62 NQEQDLS 68
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 28.3 bits (63), Expect = 2.0
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 49 AGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLD------HYAPQYLI-LEVIQNKI 100
D+G G G + LL + + +D A L + +
Sbjct: 33 RVLNGYDLGCGPGNSTELLTDRYGVNV-----ITGIDSDDDMLEKAADRLPNTNFGKADL 87
Query: 101 ENVELPEKVDIIVS 114
+ +K D++ +
Sbjct: 88 ATWKPAQKADLLYA 101
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 28.0 bits (63), Expect = 2.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
EE+ E+ +E++ +E + + + + EEE K +D
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
Score = 28.0 bits (63), Expect = 2.2
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 200 EEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
EE E E ++E E + EE +++ + ++
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
Score = 26.5 bits (59), Expect = 7.7
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 212 IEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+E+ EN E++ E V Q+ EE + +L+ ++
Sbjct: 1 MEERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
Score = 26.1 bits (58), Expect = 9.8
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKE 208
E + E + E +E + +++ K EEE + K+
Sbjct: 3 ERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKD 40
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 28.0 bits (62), Expect = 2.1
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 178 DEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
EI +E + E + + ++ E+ +EE + E + E + + E+ KQ+
Sbjct: 9 QEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANAR 68
Query: 238 EEEEVLIKLEEEE 250
E +EE
Sbjct: 69 LEVRRKRLAIQEE 81
Score = 28.0 bits (62), Expect = 2.3
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
E I E K+ E +IE NE ++ ++ K + E + + K + E E++
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 226 EVVKQKKNEEEEEEEEVLIK 245
+ + + +E +I
Sbjct: 65 ANARLEVRRKRLAIQEEIIS 84
Score = 27.3 bits (60), Expect = 4.8
Identities = 15/81 (18%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEE--EEEEKKEEDEIEKEEGENEEEEEEEVV 228
+E +++ + I E ++ E++K++ + E E ++ + + E E+ EV
Sbjct: 13 KEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVR 72
Query: 229 KQKKNEEEEEEEEVLIKLEEE 249
+++ +EE VL +++
Sbjct: 73 RKRLAIQEEIISSVLEEVKRR 93
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 28.5 bits (64), Expect = 2.1
Identities = 8/54 (14%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 8 DHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
+ E ++ K M A + + VLD+ G
Sbjct: 125 SSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENK-IEPLKVLDISASHG 177
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 28.7 bits (64), Expect = 2.2
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEEKKEEDEIEKEEGENEE 221
+N + KK++D + E ++++ K + + +E + +I + ++E
Sbjct: 682 NVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDE 741
Query: 222 EEEEEVVKQKKNEEEEEE 239
E+E+E K +
Sbjct: 742 EQEDEAPAPPKPKPPSTP 759
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 28.2 bits (63), Expect = 2.2
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 46 NIFAGKTVLDVGTGTGK-SILLQGHG 70
+ +LD+G G+GK S+ L G
Sbjct: 27 YLQEDDEILDIGCGSGKISLELASKG 52
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 28.7 bits (64), Expect = 2.5
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 48 FAGKTVLDVGTGTGKSI-------LLQG 68
F K VL G G G SI LLQG
Sbjct: 474 FKDKYVLITGAGKG-SIGAEVLQGLLQG 500
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 28.7 bits (64), Expect = 2.6
Identities = 21/152 (13%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 93 LEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152
++VI + + +PE +V + +++++ +I F + V +
Sbjct: 1789 VDVIPMEFTDFIVPEVNKELVFTEP-IQTIRDAVVNILIHFDRNFYQKMKVGVNPR---- 1843
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEI 212
S + + + + K ++ ++E + + +K N+ + E K
Sbjct: 1844 SPGYFIDGLRALVKLV---TAKYQD--LQENQRFVNVGL-EKLNESVLKVNELNKTLSIS 1897
Query: 213 EKEEGENEEEEEEEVVKQKKNEEEEEEEEVLI 244
+ E+E KQ +E +I
Sbjct: 1898 LVKSLTFEKERWLNTTKQFSKTSQELIGNCII 1929
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 28.0 bits (63), Expect = 2.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 45 PNIFAGKTVLDVGTGTG 61
+ G +DVG+G+G
Sbjct: 76 NVLKPGSRAIDVGSGSG 92
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 295
Score = 28.1 bits (62), Expect = 2.6
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
WE + ++ +EIE+EE +K +EE + E E + E + E
Sbjct: 195 WEVMPDLYFYRDPEEIEKEEQAAA----EKAVTKEEFQGEWTAPAPEFTAAQPEVADWSE 250
Query: 225 EEVV 228
V
Sbjct: 251 GVQV 254
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 27.9 bits (62), Expect = 2.6
Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 19/163 (11%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGK-SILL--QGH---GVD-HHSFCTKVHPLDHYAPQYL 91
+ N +L + G G+ + L G+ VD K + +
Sbjct: 19 DFLVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAK--QLAQEKGV 76
Query: 92 ILEVIQNKIENVELP-EKVDIIVSEWMGFYL-LHESMIDSVIFARDKFLKPEGVMYPYKC 149
+ +Q+ + + ++ + + IVS + L + + V + LKP GV +
Sbjct: 77 KITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVY----QGLKPGGVFI-LEG 131
Query: 150 ILHSAPSYSPEIFKFWENIAGEEEKKE---EDEIEEEENEEEE 189
Y+ K + + E + N E
Sbjct: 132 FAPEQLQYNTGGPKDLDLLPKLETLQSELPSLNWLIANNLERN 174
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding,
nucleotide-binding, NUCL protein transport, transport,
cytoplasm, GTPase activation; HET: GTP; 2.00A
{Saccharomyces cerevisiae}
Length = 191
Score = 27.9 bits (61), Expect = 2.7
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
K E+ E +++E + +EE K++ + E + + +EK + + EE+EE + K +
Sbjct: 23 KAEKPETKKDEEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVR 80
Score = 26.3 bits (57), Expect = 9.7
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
++ + K++EE+ +E+ +++ + E + E +++ + EE+EEVL K
Sbjct: 25 EKPETKKDEEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYK 78
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 28.1 bits (62), Expect = 2.9
Identities = 21/122 (17%), Positives = 35/122 (28%), Gaps = 23/122 (18%)
Query: 38 RAAICDNPNIFAGKTVLDVGTGTG---KSILLQGHGVDHHSFCTKVHPLD---------- 84
+ LD G G G K++L + L+
Sbjct: 82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKL--------YATTDLLEPVKHMLEEAK 133
Query: 85 HYAPQYLILEVIQNKIENVELPE-KVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGV 143
+ + I +E LP D+IV +W YL + + L P G
Sbjct: 134 RELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQA-LTPNGY 192
Query: 144 MY 145
++
Sbjct: 193 IF 194
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 27.8 bits (61), Expect = 3.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ +E+ E E+ +K+ K K E E EE+ + E G
Sbjct: 180 QQVLEQREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIG 220
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 28.1 bits (63), Expect = 3.0
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
+EI++ + ++++ ++ KEEE EE K++++E
Sbjct: 229 PVEEIKKLIEKVKKKLNEENKKEEENREETKEKQEE 264
Score = 26.9 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 187 EEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
EE+K+ K +++ EE K+E+E +E E +EE
Sbjct: 229 PVEEIKKLIEKVKKKLNEENKKEEENREETKEKQEE 264
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 27.9 bits (63), Expect = 3.0
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEE 237
+ K +E E ++ E+E+E E+ E E ++ + + + E
Sbjct: 37 NITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEAS 85
Score = 27.2 bits (61), Expect = 5.8
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 178 DEIEEEENEEE--EEVKQKKNKEEEEEEE-----EKKEEDEIEKEEGENEEEEEEEVVKQ 230
EIE+ + E + E + EE + +E + E E E E E+ K
Sbjct: 6 KEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELEIEKY 65
Query: 231 KKNEEEEEEEEVLIKLEEEEEN 252
+K ++ +E + + E +
Sbjct: 66 EKELDQLYQELLFLLSPEASDK 87
Score = 26.8 bits (60), Expect = 6.5
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEK 206
K+ ++ IE E E E++ +K ++E ++ ++
Sbjct: 40 NRIKETQEFIELLREEGENELEIEKYEKELDQLYQE 75
>3u5c_J 40S ribosomal protein S9-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_C 3o30_E 3o2z_E 3u5g_J 1s1h_D 3jyv_D*
Length = 197
Score = 27.8 bits (61), Expect = 3.3
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 174 KKEEDEIEEEEN-----EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E I+ V ++ + E E +E + EE
Sbjct: 150 LDSEKHIDFAPTSPFGGARPGRVARRNAARKAEASGEAADEADEADEE 197
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 27.5 bits (62), Expect = 3.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 45 PNIFAGKTVLDVGTGTG 61
+ G LDVG+G+G
Sbjct: 73 DQLHEGAKALDVGSGSG 89
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.0 bits (63), Expect = 3.4
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 48 FAGKTVLDVGTGTG 61
F G++ +DVG G+G
Sbjct: 166 FRGRSFVDVGGGSG 179
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 27.2 bits (59), Expect = 3.5
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEE 235
E ++ E EE+ + ++ +EE +E+E ++EDE + ++ + +EEEEEEV Q ++
Sbjct: 22 AAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLR 81
Query: 236 EE 237
E
Sbjct: 82 EH 83
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.5 bits (61), Expect = 3.6
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 47 IFAGKTVLDVGTGTGK--SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIEN-- 102
I + + D+G+ ++ V A + + + +I+
Sbjct: 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78
Query: 103 ------VELPEKVDIIVSEWMGFYLLHESMIDS 129
+E + +D IV MG L+ + +
Sbjct: 79 GNGLAVIEKKDAIDTIVIAGMGGTLIRTILEEG 111
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 27.7 bits (62), Expect = 3.7
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 43 DNPNIFAGKTVLDVGTG 59
P FAG V +G G
Sbjct: 156 STPAPFAGMRVAIIGGG 172
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 27.6 bits (62), Expect = 3.9
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEE 216
E EE K+ + + K E+ + +
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNK 265
Score = 27.6 bits (62), Expect = 4.2
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
EN EEV K+ + + E + + E++V
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
Score = 27.2 bits (61), Expect = 5.3
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E EE K + + K EE + ++ E++ ++
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 26.8 bits (60), Expect = 6.7
Identities = 6/46 (13%), Positives = 19/46 (41%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
E V ++ + ++ + K E ++ ++ V++K +
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 26.8 bits (60), Expect = 7.0
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 191 VKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ EE +D + ++ + EE + +K E++ ++
Sbjct: 226 IYLLHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 27.7 bits (62), Expect = 4.0
Identities = 13/86 (15%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 172 EEKKEEDEIEEEENEEE---------EEVKQKKN--------KEEEEEEEEKKEEDEIEK 214
++ +E E+ + + K +E + ++ E+E+
Sbjct: 176 KQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQ 235
Query: 215 EEGENEEEEEEEVVKQKKNEEEEEEE 240
++EEEE + ++K+ E++E+++
Sbjct: 236 LIKKHEEEEAKAEREKKEKEQKEKDK 261
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.6 bits (62), Expect = 4.0
Identities = 5/65 (7%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV--VKQKKNEEEEEEEEVL 243
E+ ++++K E +D + ++ + ++++ +E ++
Sbjct: 84 EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 143
Query: 244 IKLEE 248
+
Sbjct: 144 EQFYL 148
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 27.6 bits (62), Expect = 4.0
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 176 EEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
++D++ EE ++K + +E +K ++ +E
Sbjct: 225 DDDDVSPFLEGLEERPQRKAQPAQPADEPAEKADEPME 262
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 27.9 bits (63), Expect = 4.0
Identities = 10/86 (11%), Positives = 30/86 (34%), Gaps = 2/86 (2%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
+I + + + +E + ++ E+ + +K E + E +K +
Sbjct: 215 QIIQGIQQLV-KETGVTKRTPQKLF-TPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDE 272
Query: 220 EEEEEEEVVKQKKNEEEEEEEEVLIK 245
+ +++ E+ E + I
Sbjct: 273 AVNKIRLDTEEQLKEKFPEADPYEII 298
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 27.9 bits (62), Expect = 4.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+ K ++ E EEK ++ KE+ E E E+++ +Q + E +E
Sbjct: 378 QAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 27.5 bits (61), Expect = 4.7
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 160 EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E F N + ++ + E EE+ + K KE+ E+E +K++ + +
Sbjct: 364 EFFMDLHNFRNMFLQAVKENQKRRETEEKMR-RAKLAKEKAEKERLEKQQKREQLIDMNA 422
Query: 220 EEEEEEEV 227
E +E +
Sbjct: 423 EGDETGVM 430
Score = 26.4 bits (58), Expect = 9.9
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
EEK ++ +E+ E+E KQ+K ++ + E E ++
Sbjct: 389 TEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMD 431
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 27.4 bits (61), Expect = 4.2
Identities = 25/131 (19%), Positives = 38/131 (29%), Gaps = 37/131 (28%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGK-----SIL---LQGHGVDHHSFCTKVHPLDHYAPQY 90
+ P VLD+GTG G I+ L+ VD + KV ++
Sbjct: 70 LTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVD--ATRKKVAFVERAIEV- 126
Query: 91 LIL---EVIQNKIENV----ELPEKVDIIVS------EWMGFYLLHESMIDSVIFARDKF 137
L L + + E + E V+ + LL F
Sbjct: 127 LGLKGARALWGRAEVLAREAGHREAYARAVARAVAPLCVLSELLLP-------------F 173
Query: 138 LKPEGVMYPYK 148
L+ G K
Sbjct: 174 LEVGGAAVAMK 184
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 27.8 bits (61), Expect = 4.2
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 148 KCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
+ S++ +F +I G + E E+ + ++++ +EEE+ E
Sbjct: 828 SAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGD 887
Query: 208 EEDE 211
DE
Sbjct: 888 VPDE 891
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 27.4 bits (60), Expect = 4.3
Identities = 13/106 (12%), Positives = 28/106 (26%)
Query: 141 EGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEE 200
E Y L S + ++ + K E E E +E+ +
Sbjct: 137 EACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLY 196
Query: 201 EEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKL 246
+ + + E E E + + + + + L
Sbjct: 197 HQVSKIEWEYECEPGMVKGIHHGPSVAQPIHLDSTQLSRKFISDYL 242
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 27.3 bits (60), Expect = 4.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 180 IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+++ E EEV K K + E +K +G E+++ V K+ K+EEEE
Sbjct: 259 VKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGY---EDDDYVSKKSKHEEEEWT 315
Query: 240 EEVLI 244
++ L+
Sbjct: 316 DDDLV 320
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 27.5 bits (61), Expect = 4.6
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
E K E +++ +++ ++ +E+ E +++KE E
Sbjct: 314 ESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 353
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 27.2 bits (60), Expect = 4.8
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 15/125 (12%)
Query: 34 NEAYRAAICDNPNIFAGKTVLDVGTGTGK--SILLQGHGVDH-----------HSFCTKV 80
N+ + K V+D+G G G S+LL+ + ++
Sbjct: 14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRL 73
Query: 81 HPLDHYAPQYLILEVIQNKIENVEL-PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK 139
Q + + Q+ + + D + L E+ + + +F +
Sbjct: 74 KIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEV-IEHLDENRLQAFEKVLFEFTR 132
Query: 140 PEGVM 144
P+ V+
Sbjct: 133 PQTVI 137
>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
alto}
Length = 487
Score = 27.4 bits (61), Expect = 4.9
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 195 KNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
K EE ++ K EI+K + ++E + + ++ L L +
Sbjct: 385 VKKLEEFYKQNLKYSMEIQKWKKTKNNYYDKEFYENLDKKSYSTIDKFLNLLNNGKH 441
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 27.5 bits (62), Expect = 5.0
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV--VKQKKNEEEEEEEEVLIK 245
+ EV++ K + +E + E + + K E +E + ++ EE E +
Sbjct: 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
Query: 246 LEE 248
LE
Sbjct: 94 LEA 96
>2nys_A AGR_C_3712P; SSPB, stringent starvation protein B, NESG, ATR88,
structural genomics, PSI-2, protein structure
initiative; 2.70A {Agrobacterium tumefaciens str} SCOP:
b.136.1.2
Length = 176
Score = 26.9 bits (59), Expect = 5.0
Identities = 15/67 (22%), Positives = 26/67 (38%)
Query: 139 KPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKE 198
PE ++ PY I +F +A EEE +E + + E + +
Sbjct: 91 TPEKLVIPYNAIRGFYDPSVNFELEFDVPLAKEEEMEEAEITAYPVSHEAKPASETPKSG 150
Query: 199 EEEEEEE 205
EE++E
Sbjct: 151 EEKKEGS 157
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 27.1 bits (60), Expect = 5.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 48 FAGKTVLDVGTGTG 61
T +D+G+G G
Sbjct: 42 ITAGTCIDIGSGPG 55
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces
cerevisiae}
Length = 1219
Score = 27.5 bits (61), Expect = 5.5
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 197 KEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+ E EE E + +E E+EE + E + K+ ++ + E++ L E +
Sbjct: 28 EIENEELENGNDNNEAEEEEIDEETGAIKSTKKKISLQDIYDLEDLKKNLMTEGDM 83
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 26.6 bits (58), Expect = 5.6
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 147 YKCILHSAPSYSPEIFKFWENIAGEEEKKEED--EIEEEENEEEEEVKQKKNKEEEEEEE 204
C + + + G ED ++++ + E K+K ++ + +E
Sbjct: 65 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDEV 124
Query: 205 EKKEE 209
KK+
Sbjct: 125 AKKKS 129
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics,
structural genomi consortium, SGC; 2.50A {Plasmodium
falciparum 3D7}
Length = 166
Score = 26.7 bits (59), Expect = 5.6
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 165 WENIAGEEEKKEEDEIEEEENE-EEEEVKQKKNKEEEEEEEEKKEED 210
+ +E +I + EEE +K K KE++ EE ++ E +
Sbjct: 120 LIVMGYNNFILKEKKINDMLKLVEEENIKWSKEKEDQIEEIDELENN 166
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 27.1 bits (60), Expect = 5.7
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 14 YFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTG 61
++ D + + T A A + LD+G G G
Sbjct: 49 LYKEPVDQDEIREASLRTDEWLASELA--MTGVLQRQAKGLDLGAGYG 94
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens
str}
Length = 260
Score = 27.2 bits (60), Expect = 5.9
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 49 AGKTVLDVGTGTG 61
+ D+G G G
Sbjct: 36 RACRIADLGAGAG 48
>2di4_A Zinc protease, cell division protein FTSH homolog;
metalloproteinase, hexamer-ring, hydrolase; 2.79A
{Aquifex aeolicus} SCOP: a.269.1.1
Length = 238
Score = 26.8 bits (60), Expect = 6.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEE 221
E+E +E E E+K K KEE +++ K EE++ K E EE
Sbjct: 186 EKETITCEEFVEVFKLYGIELKDKCKKEELFDKDRKSEENKELKSEEVKEE 236
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 27.1 bits (61), Expect = 6.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 49 AGKTVLDVGTGTGKSILL---------QGHGVD 72
+LD+GTGTG +I L + VD
Sbjct: 109 QPCRILDLGTGTG-AIALALASERPDCEIIAVD 140
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 27.0 bits (60), Expect = 6.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 46 NIFAGKTVLDVGTGTG 61
+ G TVLDVGTG G
Sbjct: 34 GLKEGMTVLDVGTGAG 49
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 27.0 bits (60), Expect = 6.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 50 GKTVLDVGTGTG 61
G VL++G GTG
Sbjct: 76 GMRVLEIGGGTG 87
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 27.1 bits (59), Expect = 6.9
Identities = 12/101 (11%), Positives = 33/101 (32%), Gaps = 2/101 (1%)
Query: 152 HSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
S +F E I E E + E+E+ + ++ +++ + K
Sbjct: 28 LSKAMSQDGASQFQEVIRQELELSVKKELEKILTTASSH--EFEHTKKDLDGFRKLFHRF 85
Query: 212 IEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
++++ + + + + E+ + L N
Sbjct: 86 LQEKGPSVDWGKIQRPPEDSIQPYEKIKARGLPDNISSVLN 126
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 26.1 bits (57), Expect = 7.1
Identities = 7/58 (12%), Positives = 24/58 (41%)
Query: 184 ENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEE 241
+E + ++ K E E E+ + + E++++ +E + + + + +
Sbjct: 2 NQDERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQAL 59
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 26.7 bits (58), Expect = 7.3
Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 59/262 (22%)
Query: 4 EVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAI---------CDNPNIFAGKTVL 54
++++ ++Y + + L+D V AI +I G TVL
Sbjct: 58 QILRSSFGKQYM-------LRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVL 110
Query: 55 DVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLI-------LEVIQNKIENVELPE 107
+ G+G+G L V +V + + + E P+
Sbjct: 111 EAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 167
Query: 108 KVDIIVSEWMGFYL-LHESMIDS----------VIFARDKFLKPEGVMYPYKCILHSAPS 156
VD I + G + D+ + LK GV
Sbjct: 168 NVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCA----------V 217
Query: 157 YSPEIF---KFWENIAGEEEKKEEDEIEE---------EENEEEEEVKQKKNKEEEEEEE 204
Y I + + I E ++I E ++ + QK + + +
Sbjct: 218 YVVNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQ 277
Query: 205 EKKEEDEIEKEEGENEEEEEEE 226
+E K E E++ EE
Sbjct: 278 LDSQEKIGVKGELFQEDDHEES 299
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 27.1 bits (59), Expect = 7.5
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGEN 219
E+E+ E E + + + N ++E ++ EED+ E+
Sbjct: 454 EEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAES 496
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex;
1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Length = 102
Score = 25.7 bits (57), Expect = 7.5
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 10/58 (17%)
Query: 6 VKDHDEEEYFESYTDLEVHKLMLDDTVR----------NEAYRAAICDNPNIFAGKTV 53
+ + + +F Y ++ K++ D T N+ I ++ F GK +
Sbjct: 21 MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVESQINFHGKKL 78
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 26.8 bits (58), Expect = 7.8
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 199 EEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E+ ++I + +++E E V + N E +E VL EE E
Sbjct: 598 NEDFCPAPPNPEDIVLDGDSSQQEVPESSVTPETNSETPKESTVLGNPEEPSE 650
Score = 26.8 bits (58), Expect = 8.0
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
E+I + + +++ E E K++ EE +
Sbjct: 609 EDIVLDGDSSQQEVPESSVTPETNSETPKESTVLGNPEEPSE 650
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.8 bits (59), Expect = 8.1
Identities = 13/74 (17%), Positives = 27/74 (36%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
N A + + + + E+++ + EEE + K E + E +EE+
Sbjct: 262 NNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQ 321
Query: 226 EVVKQKKNEEEEEE 239
+ + E E
Sbjct: 322 KSNTAGSQSQVETE 335
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 26.5 bits (58), Expect = 8.5
Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 17/148 (11%)
Query: 41 ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKI 100
I I G +++ G G+G L + V +V + ++ I
Sbjct: 85 IVAYAGISPGDFIVEAGVGSGALTLFLANIVGP---EGRVVSYEIREDFA---KLAWENI 138
Query: 101 ENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCIL---HSAPSY 157
+ ++V I + + + E +D VI +PE V+ L +Y
Sbjct: 139 KWAGFDDRVTIKLKDIYEG--IEEENVDHVILD---LPQPERVVEHAAKALKPGGFFVAY 193
Query: 158 SP---EIFKFWENIAGEEEKKEEDEIEE 182
+P ++ + E + ++ +
Sbjct: 194 TPCSNQVMRLHEKLREFKDYFMKPRTIN 221
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 26.8 bits (60), Expect = 8.6
Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 169 AGEEEKKEEDE------IEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
AG+E + E E ++ + E+E+E ++ K EE+ +E +E ++E+
Sbjct: 251 AGDEILEVESEPRAREVVDWRKYEQEQEKNKEDLKLIEEKRKEHQEAHRKDREKYGTVHW 310
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
+E +K ++ +++ + +
Sbjct: 311 KERSYIKYREKRQQQPLKPKEKLERDSNV 339
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 26.2 bits (57), Expect = 8.7
Identities = 13/72 (18%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 181 EEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEE 240
EE N+ E ++ + E +E+ E++ + ++GE + + +V E+ ++
Sbjct: 5 EEAFNDGNENF---EDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQH 61
Query: 241 EVLIKLEEEEEN 252
E + + +E+
Sbjct: 62 EQIRRKTLKEKA 73
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 26.9 bits (60), Expect = 8.9
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEE-----EEEEKKE-EDEIEKE----EGENE 220
+ K E E+ +N EE + + K EEE + EK + + + K E
Sbjct: 540 LAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGF 599
Query: 221 EEEEEEVVKQKK 232
+ + + + + +
Sbjct: 600 DSIKAKYIAKYE 611
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 26.4 bits (58), Expect = 8.9
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 12/87 (13%)
Query: 50 GKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDH---YAPQYLILEVIQNKIENVELP 106
G TV+D G G + V + Q + K+ ++ L
Sbjct: 23 GDTVVDATCGNGNDTAF---------LASLVGENGRVFGFDIQDKAIANTTKKLTDLNLI 73
Query: 107 EKVDIIVSEWMGFYLLHESMIDSVIFA 133
++V +I + + +V+F
Sbjct: 74 DRVTLIKDGHQNMDKYIDCPVKAVMFN 100
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 26.7 bits (60), Expect = 9.0
Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 28/109 (25%)
Query: 171 EEE--KKEEDE--------IEEEENEEEEEVKQKK---NKEEEEEEEEKKEEDEIEKEEG 217
E E KKE+D IE E + EE+ + + +E E + ++ + +++
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 218 ENEEEEEE---------------EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E E E + ++ + + E+ ++LE EE
Sbjct: 476 EIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEE 524
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 26.4 bits (58), Expect = 9.2
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 45 PNIFAGKTVLDVGTGTGKSIL 65
KTVLD G G L
Sbjct: 19 NESNLDKTVLDCGAGGDLPPL 39
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 26.6 bits (59), Expect = 9.2
Identities = 7/50 (14%), Positives = 15/50 (30%)
Query: 196 NKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIK 245
K EE + +E + + E + E++L +
Sbjct: 2 GHHHHHHSSPKIEERTYPPQIPAQQELGDFSAYQSVLPEPLRKAEKLLQE 51
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
3spw_A* 1zi7_A
Length = 438
Score = 26.4 bits (58), Expect = 9.7
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 173 EKKEEDEIEEEENEEEEEVKQ-KKNKEEEEEEEE------KKEEDEIEKEEGENEEEEEE 225
+ + + I + + E EE Q + KEEE + K + + EEG E+++
Sbjct: 329 KLGDFNLIAKTKTELEE--TQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDD 386
Query: 226 EVVKQKKN 233
+K
Sbjct: 387 TFLKLASA 394
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 26.0 bits (58), Expect = 9.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 50 GKTVLDVGTGTG 61
G VL++GTG G
Sbjct: 78 GMKVLEIGTGCG 89
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase
fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A
{Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A*
2aov_A* 2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 26.2 bits (57), Expect = 9.8
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 9 HDEEEYFESYTDLEVHKLMLDDTVR--NEAYRAAICDNPNIFAGKTVLDVGTGTGK 62
D +Y ES+ H ++ I + + +L +G G G+
Sbjct: 10 SDHGKYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGE 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.130 0.357
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,138,325
Number of extensions: 275668
Number of successful extensions: 5231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3394
Number of HSP's successfully gapped: 1123
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.4 bits)