RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9773
(252 letters)
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 107 bits (267), Expect = 4e-28
Identities = 57/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 17 SYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILL------QGH 69
SY +H+ ML D VR YR ++ N ++F K VLDVG+GTG + +
Sbjct: 1 SYAHFGIHEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVI 60
Query: 70 GVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVE-LPEKVDIIVSEWMGFYLLHESMID 128
G++ S + ++ +I+ K+E VE EKVDII+SEWMG+ L +ESM++
Sbjct: 61 GIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120
Query: 129 SVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
+V+ ARDK+L P+G+++P + L+ + +WEN+ G
Sbjct: 121 TVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYG 166
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 102 bits (254), Expect = 3e-26
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 12/171 (7%)
Query: 12 EEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG 70
+ YF+SY +H+ ML DTVR +YR AI N ++F K VLDVG GTG S+ HG
Sbjct: 1 DYYFDSYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG 60
Query: 71 ------VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPE-KVDIIVSEWMGFYLLH 123
VD S L + +++ K+E+V LP KVDII+SEWMG++LL+
Sbjct: 61 AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLLY 120
Query: 124 ESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFK----FWENIAG 170
ESM+D+V++ARD +L G+++P KC +H A + +W+++ G
Sbjct: 121 ESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYG 171
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 101 bits (253), Expect = 3e-26
Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 12/181 (6%)
Query: 15 FESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK-SILLQGHG--- 70
F SY +H+ ML D +R E+YR I NP+IF K VLDVG GTG S+ G
Sbjct: 1 FSSYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKK 60
Query: 71 ---VDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEK-VDIIVSEWMGFYLLHESM 126
VD + + + +I+ KIE V LP + VD+I+SEWMG++LL ESM
Sbjct: 61 VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESM 120
Query: 127 IDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI----FKFWENIAGEEEKKEEDEIEE 182
+DSV++A++K+L G +YP C + FW+++ G + + +
Sbjct: 121 LDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIP 180
Query: 183 E 183
E
Sbjct: 181 E 181
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 251
Score = 42.0 bits (97), Expect = 2e-05
Identities = 32/222 (14%), Positives = 60/222 (27%), Gaps = 10/222 (4%)
Query: 13 EYFESYTDL--EVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHG 70
E + + +++ ++ + I + VLD+ GTG L
Sbjct: 3 ELYTLLAEYYDTIYRRRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER 62
Query: 71 VD-----HHSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHES 125
+ L +E +Q + + + D + + E
Sbjct: 63 GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEE 122
Query: 126 MIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEEN 185
+ + + LKP GV P + W GEE+ D E E
Sbjct: 123 DLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVV---WNEQKGEEKLVIMDWREVEPA 179
Query: 186 EEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
++ K+ E + D+ E E
Sbjct: 180 VQKLRFKRLVQILRPNGEVKAFLVDDELNIYTPREVRLLAEK 221
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 292
Score = 39.5 bits (91), Expect = 2e-04
Identities = 29/230 (12%), Positives = 62/230 (26%), Gaps = 21/230 (9%)
Query: 3 MEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGK 62
+ V + ++Y + + D R Y+A + VLDV GTG
Sbjct: 10 LGVAAEGIPDQYADGEAARVWQLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGV 69
Query: 63 -SILLQGHGVD---------HHSFCTKVHPLDHYAPQYLILEVIQNKIENVE----LPEK 108
SI+L G + K P + + + ++ +
Sbjct: 70 DSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129
Query: 109 VDIIVSEWMGFYLLHESMIDSVIFAR-----DKFLKPEGVMYPYKCILHSAPSYSPEIFK 163
D ++ F L +S D ++P G++ + S
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI--DHRNYDYILSTGCAP 187
Query: 164 FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIE 213
+NI + + ++ + + + +
Sbjct: 188 PGKNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSK 237
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 36.9 bits (84), Expect = 0.001
Identities = 25/139 (17%), Positives = 43/139 (30%), Gaps = 12/139 (8%)
Query: 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILL-------QGHGVD-HHSFCTKVHPLDHY 86
E A + + G +LD+G+G+G+ + G G+D F +
Sbjct: 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEE 78
Query: 87 APQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYP 146
+ I N EK D+ + LKP G+M
Sbjct: 79 LGVSERVHFIHNDAAGYVANEKCDVAACVGA---TWIAGGFAGAEELLAQSLKPGGIMLI 135
Query: 147 YKCILHSAPSYSPEIFKFW 165
+ P+ + EI +
Sbjct: 136 GEPYWRQLPA-TEEIAQAC 153
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 246
Score = 35.8 bits (81), Expect = 0.003
Identities = 30/205 (14%), Positives = 58/205 (28%), Gaps = 14/205 (6%)
Query: 22 EVHKLMLDDTVRNEAYRAAICD--NPNIFAGKTVLDVGTGTGKSILL------QGHGVDH 73
++ ++ V + + I + N LD+ GTG VD
Sbjct: 8 HIYDKLIRADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDL 67
Query: 74 HSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFA 133
+ Q+ + I Y++ + A
Sbjct: 68 SQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKA 127
Query: 134 RDKFLKPEGV----MYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEEEE 189
LK GV + Y + + + + E + ED++
Sbjct: 128 VSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDD--DEVFYYWENQFEDDLVSMYISFFV 185
Query: 190 EVKQKKNKEEEEEEEEKKEEDEIEK 214
+ + +EE EE +E++IEK
Sbjct: 186 RDGEFYKRFDEEHEERAYKEEDIEK 210
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 34.5 bits (78), Expect = 0.006
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 12/136 (8%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGKSILL------QGHGVDHHSFCTKVHPLDHYAPQYLI 92
+ A VLD+G G G + L + GVD +V +A + +
Sbjct: 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVAS--SFAQEKGV 63
Query: 93 LEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152
V + LP D + H S + + + LK +G + H
Sbjct: 64 ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL---LVDH 120
Query: 153 SAPSYSPEIFKFWENI 168
AP P + +F ++
Sbjct: 121 YAPE-DPVLDEFVNHL 135
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 34.1 bits (77), Expect = 0.011
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 14/125 (11%)
Query: 30 DTVRNEAYRAAICDN-PNIFAGKTVLDVGTGTGKSILL---------QGHGVDHHSFCTK 79
D N+ Y + + + I ++D G G G L+ + G+D
Sbjct: 7 DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 66
Query: 80 VHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLK 139
+ + E ++ +EL +K DI + LLH + ++++ +K
Sbjct: 67 EAR-ELFRLLPYDSEFLEGDATEIELNDKYDIAICHAF---LLHMTTPETMLQKMIHSVK 122
Query: 140 PEGVM 144
G +
Sbjct: 123 KGGKI 127
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB
{Salmonella typhimurium [TaxId: 90371]}
Length = 198
Score = 33.4 bits (75), Expect = 0.014
Identities = 24/131 (18%), Positives = 40/131 (30%), Gaps = 17/131 (12%)
Query: 31 TVRNEAY----------RAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKV 80
TVR+E Y + + + A LD+G G G++ L + K
Sbjct: 2 TVRDENYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKN 61
Query: 81 HPLDHY------APQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFAR 134
A L+ + + + D I+S + L I +I
Sbjct: 62 PASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILS-TVVMMFLEAQTIPGLIANM 120
Query: 135 DKFLKPEGVMY 145
+ KP G
Sbjct: 121 QRCTKPGGYNL 131
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 33.5 bits (75), Expect = 0.016
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGKSILL------QGHGVDHHSFCTKVHPLDHYAPQYLI 92
A + + + VLDV TG G + D KV +
Sbjct: 5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 93 LEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152
+E +Q E + ++ IV+ + + H S + + LK G + ++
Sbjct: 65 VEYVQGDAEQMPFTDERFHIVTCRIAAH--HFPNPASFVSEAYRVLKKGGQLL----LVD 118
Query: 153 SAPSYSPEIFKFWENIAGE 171
++ + F+ + E
Sbjct: 119 NSAPENDAFDVFYNYVEKE 137
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 32.9 bits (74), Expect = 0.018
Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 12/144 (8%)
Query: 35 EAYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILE 94
R I +DVG GTG L V + L
Sbjct: 19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH 78
Query: 95 VIQNKIENV-----ELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKC 149
+ + + + E K+ I +G I +I + LKP G +
Sbjct: 79 GLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDK---LKPGGRIIVTAI 135
Query: 150 ILHSAPSYSPEIFKFWENIAGEEE 173
+L + E + ++ +
Sbjct: 136 LLETK----FEAMECLRDLGFDVN 155
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 33.2 bits (75), Expect = 0.023
Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 21/208 (10%)
Query: 46 NIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVEL 105
+I G TVL+ G+G+G L V +V + ++ + ++
Sbjct: 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQG---RVISFEVRKDH---HDLAKKNYKHWRD 148
Query: 106 PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFL--KPEGVMYPYKCILHSAP-------- 155
K+ + +H+ + + + ++ P+ + P
Sbjct: 149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVC 208
Query: 156 -SYSP---EIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDE 211
Y ++ + + I E ++I E + V K K ++ + + +
Sbjct: 209 AVYVVNITQVIELLDGIRTCELALSCEKI-SEVIVRDWLVCLAKQKNGILAQKVESKINT 267
Query: 212 IEKEEGENEEEEEEEVVKQKKNEEEEEE 239
+ + + + + E+ ++ +EE +
Sbjct: 268 DVQLDSQEKIGVKGELFQEDDHEESHSD 295
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 32.2 bits (72), Expect = 0.027
Identities = 18/138 (13%), Positives = 41/138 (29%), Gaps = 19/138 (13%)
Query: 48 FAGKTVLDVGTGTGK-SILLQGHGVDH---------HSFCTKVHPLDHYAPQYLILEVIQ 97
F G VLD+ G+G +I G+ + + + A L ++
Sbjct: 13 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKME 72
Query: 98 NKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSY 157
+ L + D++ + + I+++ L + ++
Sbjct: 73 AERAIDCLTGRFDLVFLDPPYAKETIVATIEALA--AKNLLSEQVMVV----CETDKTVL 126
Query: 158 SPEIFKFWENIAGEEEKK 175
P+ +EK
Sbjct: 127 LPKEIATLGIW---KEKI 141
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 31.4 bits (71), Expect = 0.038
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ ++ E + E+ E E EV QK +E + KE+ + E + E + +
Sbjct: 59 KYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAMLE 118
Query: 231 KKNEEEEEEEEVLIKLEEEE 250
+ E+++ EEV E +E
Sbjct: 119 RLQEKDKHAEEVRKNKELKE 138
Score = 31.0 bits (70), Expect = 0.054
Identities = 17/81 (20%), Positives = 39/81 (48%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
EE +K+ + EE +E E+ + ++ E E E ++ E + +E+ + ++
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMES 104
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
K E +L +L+E+++
Sbjct: 105 NKENREAHLAAMLERLQEKDK 125
Score = 27.5 bits (61), Expect = 0.96
Identities = 17/83 (20%), Positives = 34/83 (40%)
Query: 169 AGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVV 228
A E K +E E+ + E+ E ++ K EE K E ++ E+ +E E +
Sbjct: 54 AEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHL 113
Query: 229 KQKKNEEEEEEEEVLIKLEEEEE 251
+E+++ + +E
Sbjct: 114 AAMLERLQEKDKHAEEVRKNKEL 136
Score = 25.6 bits (56), Expect = 3.8
Identities = 16/77 (20%), Positives = 32/77 (41%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNE 234
+ D EE ++ E ++++ +E E + E+ E E+E + EE +K K +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 235 EEEEEEEVLIKLEEEEE 251
++ E E
Sbjct: 98 LAQKMESNKENREAHLA 114
Score = 24.8 bits (54), Expect = 7.3
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 189 EEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEEEEEVLIKLEE 248
EE+++K EE + ++ E + E+ E+E E ++ +++ N + +E++ K+E
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMES 104
Query: 249 EEEN 252
+EN
Sbjct: 105 NKEN 108
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 31.0 bits (69), Expect = 0.17
Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
K+ ++ +++ E+E E++ ++ + E E + + E
Sbjct: 708 KERYQKLLKQKQEKETELENLLKL--SAKDIWNTDLKAFEVGYQEFLQRDAEA 758
Score = 29.4 bits (65), Expect = 0.48
Identities = 32/263 (12%), Positives = 86/263 (32%), Gaps = 20/263 (7%)
Query: 1 MDMEVVKDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGT 60
+ ++ E + D + L + + + + + +++++
Sbjct: 502 LSGNDKIKPWIKDMEEQHDDNIKFIITLSPEEMAKTRKIGFYERFKLISPISLMNMVAFD 561
Query: 61 GKSILLQGHGVDHHSFCTKVHPLDHYA-PQYLILEVIQNKIENVELPEKVDIIVSEWMGF 119
+ + + V+ L++Y + + E +Q ++E +V I
Sbjct: 562 PHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYS--FQVKFIKMIIEKE 619
Query: 120 YLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDE 179
+ +++I + L+ G K S + EI + ++ G +E++E
Sbjct: 620 LTVTNKPRNAII----QELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEE 675
Query: 180 IEEEENEEEEEVKQKKNKE-------------EEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E+ E ++ +E ++ K++ E E E + ++
Sbjct: 676 SSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 735
Query: 227 VVKQKKNEEEEEEEEVLIKLEEE 249
+ E +E L + E
Sbjct: 736 IWNTDLKAFEVGYQEFLQRDAEA 758
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 264
Score = 30.3 bits (68), Expect = 0.19
Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 20/174 (11%)
Query: 23 VHKLMLDDTVRNEAYRAAI---------CDNPNIFAGKTVLDVGTGTGKSILLQGHGVDH 73
V + +L D V + + +IF G VL+ G G+G L V
Sbjct: 61 VLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGP 120
Query: 74 HSFCTKVHPLDHYAPQYLILEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFA 133
+V + + + P+ ++VS+ L S+ +V+
Sbjct: 121 AG---QVISYE-QRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM 176
Query: 134 RDKFLKPEGVMYPYKCILHSA---PSYSPEIFKFWENIAGEEEKKEEDEIEEEE 184
P V+ +L + Y + + + K+ E E
Sbjct: 177 LA----PWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEPRAWE 226
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia
carotovora [TaxId: 554]}
Length = 225
Score = 29.5 bits (65), Expect = 0.33
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 8/104 (7%)
Query: 46 NIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVE 104
F +L++G+ G + LQ H D T V + +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEHFND----ITCVEASEEAISHAQGRLKDGITYIHSR 72
Query: 105 LPEKVDIIVSEWMGFYLLHESMIDSVIF---ARDKFLKPEGVMY 145
+ + + + E + D V D +L G ++
Sbjct: 73 FEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLF 116
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 28.5 bits (63), Expect = 0.61
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 2/108 (1%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGKS--ILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVI 96
+ I + G +L+VG G+G +L + + + E
Sbjct: 75 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY 134
Query: 97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVM 144
+ D I + + + + +KP V
Sbjct: 135 DIGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVA 182
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase,
INMT {Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 28.5 bits (62), Expect = 0.79
Identities = 10/76 (13%), Positives = 22/76 (28%)
Query: 7 KDHDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL 66
K +Y +Y + + ++ P G T++D+G+G +L
Sbjct: 9 KHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVL 68
Query: 67 QGHGVDHHSFCTKVHP 82
+
Sbjct: 69 AACDSFQDITLSDFTD 84
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.2 bits (62), Expect = 1.1
Identities = 15/88 (17%), Positives = 38/88 (43%)
Query: 165 WENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEE 224
E+E + E E + + + + K E+ E++++ E K+ E E +
Sbjct: 197 QTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR 256
Query: 225 EEVVKQKKNEEEEEEEEVLIKLEEEEEN 252
+++K+++ + +E L+E +
Sbjct: 257 VQLLKEQERTLALKLQEQEQLLKEGFQK 284
Score = 26.6 bits (58), Expect = 3.2
Identities = 15/71 (21%), Positives = 37/71 (52%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E ++K E +E++E +E +KQ K E + + KE++ + + +E+ +E ++
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 284
Query: 231 KKNEEEEEEEE 241
+ + E ++
Sbjct: 285 ESRIMKNEIQD 295
Score = 26.6 bits (58), Expect = 3.3
Identities = 14/81 (17%), Positives = 41/81 (50%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
++ E+++ E E + E + E + + ++ ++ E+ E+ ++ E++
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ +E+E + +KL+E+E+
Sbjct: 256 RVQLLKEQERTLALKLQEQEQ 276
Score = 26.2 bits (57), Expect = 3.8
Identities = 12/81 (14%), Positives = 38/81 (46%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
+ + E + E+ +++++ +E ++ +K E++ + E E ++ +Q
Sbjct: 215 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 274
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
++ +E ++E I E ++
Sbjct: 275 EQLLKEGFQKESRIMKNEIQD 295
Score = 25.9 bits (56), Expect = 5.7
Identities = 16/86 (18%), Positives = 37/86 (43%)
Query: 166 ENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+ I ++ E E E E + E Q K E + + ++ E ++ + ++
Sbjct: 190 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 249
Query: 226 EVVKQKKNEEEEEEEEVLIKLEEEEE 251
E ++ + + +E+E L +E+E
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQE 275
Score = 25.5 bits (55), Expect = 6.1
Identities = 14/89 (15%), Positives = 37/89 (41%)
Query: 163 KFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEE 222
K E++ + ++ E+E+ E E VK + + + E + ++E E+ E +
Sbjct: 183 KSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQ 242
Query: 223 EEEEVVKQKKNEEEEEEEEVLIKLEEEEE 251
E + + +K + + + + +
Sbjct: 243 EHLKQLTEKMENDRVQLLKEQERTLALKL 271
Score = 25.1 bits (54), Expect = 8.4
Identities = 9/81 (11%), Positives = 35/81 (43%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQ 230
E E+ + + + E ++ + E++E ++ ++ ++ + + +E +
Sbjct: 207 EVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERT 266
Query: 231 KKNEEEEEEEEVLIKLEEEEE 251
+ +E+E+ + ++E
Sbjct: 267 LALKLQEQEQLLKEGFQKESR 287
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation
factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Length = 213
Score = 27.5 bits (60), Expect = 1.2
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 34 NEAYRAA--ICDNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQYL 91
AY +N + GTGK+ LLQ G + +V
Sbjct: 19 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA 78
Query: 92 ILEVIQNKIEN 102
++E ++ N
Sbjct: 79 MVEHLKKGTIN 89
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.7 bits (61), Expect = 1.2
Identities = 5/82 (6%), Positives = 27/82 (32%)
Query: 170 GEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
GE + + + + + E ++ + E++ + + + ++ +
Sbjct: 122 GEWAEPFFGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQ 181
Query: 230 QKKNEEEEEEEEVLIKLEEEEE 251
Q + + ++ ++
Sbjct: 182 QDAVTKIADLQKAGATPDQMRA 203
Score = 25.0 bits (54), Expect = 8.4
Identities = 2/57 (3%), Positives = 18/57 (31%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
+ ++D+ + + ++ + + +++ +++ E
Sbjct: 216 RAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRA 272
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga
maritima [TaxId: 2336]}
Length = 182
Score = 27.6 bits (60), Expect = 1.3
Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQGHGVD---HHSFCTKVHPLDHYAPQYLI 92
AY A + P FAGKTV+ G G + + A +
Sbjct: 16 AYHA-FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74
Query: 93 LEVIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARD-KFLKPEGVM 144
+ + +VE K + ++ G + E+ DS + L+ G
Sbjct: 75 DLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFY 127
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 27.6 bits (60), Expect = 1.3
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 17/155 (10%)
Query: 44 NPNIFAGKTVLDVGTGTGKSIL-LQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIEN 102
G +VLD+G G G +L + G+ + + A + K+
Sbjct: 19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 78
Query: 103 VEL----------PEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILH 152
E I + +D + L+P G
Sbjct: 79 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFI------M 132
Query: 153 SAPSYSPEIFKFWENIAGEEEKKEEDEIEEEENEE 187
+ PS + ++ + + K E E E+ E
Sbjct: 133 TVPSRDVILERYKQGRMSNDFYKIELEKMEDVPME 167
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 194
Score = 27.3 bits (59), Expect = 1.4
Identities = 18/144 (12%), Positives = 47/144 (32%), Gaps = 14/144 (9%)
Query: 43 DNPNIFAGKTVLDVGTGTGKSILLQGHGVDHHSFCTKVHPLDHYAPQ--------YLILE 94
+N + +LD+G G G + V + A + +
Sbjct: 46 ENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIR 105
Query: 95 VIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSA 154
V+ + + K + I++ + ++ +I + LK G ++ ++
Sbjct: 106 VVHSDLYENVKDRKYNKIITNPP--IRAGKEVLHRIIEEGKELLKDNGEIW----VVIQT 159
Query: 155 PSYSPEIFKFWENIAGEEEKKEED 178
+ + K+ +++ G E
Sbjct: 160 KQGAKSLAKYMKDVFGNVETVTIK 183
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 27.4 bits (61), Expect = 1.6
Identities = 6/30 (20%), Positives = 18/30 (60%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ + +QKK +E+++ + E ++ E++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYK 131
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 172
Score = 26.8 bits (58), Expect = 1.9
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 36 AYRAAICDNPNIFAGKTVLDVGTGTGKSILLQG---HGVDHHSFCTKVHPLDHYAPQYLI 92
AYRA ++ G V VG G I +Q A +
Sbjct: 19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA 78
Query: 93 LEVIQNKIENVEL------PEKVDIIVSEWMGFYLLHESMIDSV 130
V+ + + V+ V++ + +++G + +
Sbjct: 79 DHVVDARRDPVKQVMELTRGRGVNVAM-DFVGSQATVDYTPYLL 121
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 27.1 bits (59), Expect = 2.0
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 1/118 (0%)
Query: 39 AAICDNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQ 97
A + D + +D+G+G G+ + + H + + + + + E +
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRK 200
Query: 98 NKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAP 155
+ + + +++ SVIF + PE + +
Sbjct: 201 WMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKE 258
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 2.0
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 192 KQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
KN +E KK +++ G ++EE E ++ +
Sbjct: 325 DPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 25.7 bits (55), Expect = 7.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 185 NEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENE 220
N +EV + K +E+ ++ D+ E EE ++E
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 25.0 bits (53), Expect = 9.8
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 174 KKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEE 209
E+ + +Q K ++EE EE ++E
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 27.1 bits (59), Expect = 2.1
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEV 227
EE + E E ++E +Q +++ KE ++ + +E+
Sbjct: 351 EEHQATTAEFEAAVIAAQKEAEQYGTLANGHIPSAASMFEDVYKEMPDHLRRQRQEL 407
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 27.0 bits (60), Expect = 2.1
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 188 EEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ + + +K +EE+ + K+E +++ KE G
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYG 139
Score = 25.1 bits (55), Expect = 8.4
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 160 EIFK--FWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
EIF+ F+++ E +E++ I + ++ Q + E ++ KEE KEE
Sbjct: 72 EIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEEN 131
Query: 218 ENEEEE 223
E +E
Sbjct: 132 EKLLKE 137
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 26.1 bits (57), Expect = 2.3
Identities = 9/60 (15%), Positives = 28/60 (46%)
Query: 158 SPEIFKFWENIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEG 217
+ W+ ++ +E+ + ++++ + E E+ + EEE++ E+++ G
Sbjct: 45 MVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISG 104
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 26.8 bits (58), Expect = 2.4
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 4/129 (3%)
Query: 41 ICDNPNIFAGKTVLDVGTGTG---KSILLQGHGVDHHSFCTKVHPLDHYAPQ-YLILEVI 96
I N+ TV ++GTG G + V + + L + + +I
Sbjct: 21 IIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLI 80
Query: 97 QNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPS 156
I + P K + + ++L + + V +R + YK L +
Sbjct: 81 HQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRT 140
Query: 157 YSPEIFKFW 165
+
Sbjct: 141 LGLLLHTQV 149
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
coli [TaxId: 562]}
Length = 268
Score = 26.5 bits (57), Expect = 2.8
Identities = 24/197 (12%), Positives = 46/197 (23%), Gaps = 23/197 (11%)
Query: 9 HDEEEYFESYTDLEVHKLMLDDTVRNEAYRAAICDNPNIFAGKTVLDVGTGTGKSILL-- 66
D E ++ L A VLD+G G G
Sbjct: 48 GDSAEMMQARRAF----LDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFA 103
Query: 67 -QGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIENVELP-EKVDIIVSEWMGFYLLHE 124
+ + A +Y + + +D I +
Sbjct: 104 DALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI---IRIYAPCKA 160
Query: 125 SMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEE 184
+ V +KP G + P + E+ N +++E
Sbjct: 161 EELARV-------VKPGGWV----ITATPGPRHLMELKGLIYNEVHLHAPH-AEQLEGFT 208
Query: 185 NEEEEEVKQKKNKEEEE 201
++ E+ +E
Sbjct: 209 LQQSAELCYPMRLRGDE 225
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 26.8 bits (58), Expect = 2.8
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 167 NIAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
N A ++ + EE + V E + K IE G +E + +
Sbjct: 222 NKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAG-FIEYIPGASEFKVLRD 280
Query: 227 VVKQKKNEEEEEEEEVLIK 245
+ +++K +E+VL +
Sbjct: 281 MSEKQKRALMVIKEKVLDR 299
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 26.2 bits (57), Expect = 3.2
Identities = 18/153 (11%), Positives = 48/153 (31%), Gaps = 23/153 (15%)
Query: 43 DNPNIFAGKTVLDVGTGTGKSILL--------QGHGVDHHSFCTKVHPLDHYAPQYLILE 94
+ + VL +G +G ++ + V++ L + +
Sbjct: 50 HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYS--AKPFEKLLELVRERNNII 107
Query: 95 VIQNKIENVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEG---VMYPYKCIL 151
+ + V + + + ++ I+ + + FLK +G +M + I
Sbjct: 108 PLLFDASKPWKYSGIVEKV-DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSID 166
Query: 152 HSAPSYSPEIFKFWENIAGEEEKKEEDEIEEEE 184
+A E + K+ E + + +
Sbjct: 167 STAEP---------EEVFKSVLKEMEGDFKIVK 190
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.5 bits (58), Expect = 3.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 168 IAGEEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEED 210
I+G+E+ K E + +E E + EEE+ + + +EE
Sbjct: 70 ISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
Score = 25.4 bits (55), Expect = 7.3
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 175 KEEDEIEEEENEEEEEVKQKKNKEEEE-----------EEEEKKEEDEIEKEEGENEEEE 223
E E+E+E E E++ K ++ + +E+ K E+ +E E+ E
Sbjct: 35 SELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNET 94
Query: 224 EEEVVKQKKNEEEEEEEEV 242
E V +++K + + EEE+V
Sbjct: 95 ELLVDEEEKAQNDSEEEQV 113
Score = 25.4 bits (55), Expect = 7.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKK 207
E+ + EI E NE E V +++ + + EEE+ K
Sbjct: 78 PEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 26.2 bits (57), Expect = 3.7
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEE-----EKKEEDEIEKEEGENEEEEEEE 226
+EKK+E E + E + E + EE + +E + E E E E E
Sbjct: 2 KEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGENELE 61
Query: 227 VVKQKKNEEEEEEEEVLIKLEE 248
+ K +K ++ +E + + E
Sbjct: 62 IEKYEKELDQLYQELLFLLSPE 83
>d1fuia2 c.85.1.1 (A:1-355) L-fucose isomerase, N-terminal and
second domains {Escherichia coli [TaxId: 562]}
Length = 355
Score = 26.4 bits (58), Expect = 4.1
Identities = 5/48 (10%), Positives = 18/48 (37%)
Query: 182 EEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVK 229
+++ +E E++ ++ + E ++ + E E +
Sbjct: 218 DQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLL 265
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 26.1 bits (56), Expect = 4.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 222 EEEEEVVKQKKNEEEEEEEEVLIKLEEE 249
EE V+ K E E++ E++ LE
Sbjct: 294 EENGRVISVWKVEAEDKTEKLAAALEHH 321
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 25.9 bits (56), Expect = 5.0
Identities = 11/112 (9%), Positives = 31/112 (27%), Gaps = 2/112 (1%)
Query: 116 WMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEIFKFWENIAGEEEK- 174
+ I + ++ I +P+ + + E
Sbjct: 212 IRDIDGHDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIAL 271
Query: 175 -KEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEE 225
+E+ + E E+ + + +E + +E ++ +E E
Sbjct: 272 TREQLGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAE 323
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei
[TaxId: 5702]}
Length = 80
Score = 24.5 bits (53), Expect = 5.2
Identities = 9/63 (14%), Positives = 28/63 (44%)
Query: 179 EIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEEEE 238
+ E ++ + + ++ E E KK+++E + + + E ++ K+ ++
Sbjct: 3 HMLEVLTQKHKPAESQQQAAETEGSCNKKDQNECKSPCKWHNDAENKKCTLDKEEAKKVA 62
Query: 239 EEE 241
+E
Sbjct: 63 DET 65
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 25.8 bits (56), Expect = 5.6
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 195 KNKEEEEEEEEKKEEDEIEKEEGENEEEE-EEEVVKQKKNEEEEEEEEVLIKL 246
K +EE EEK ++++ E + E + K +E + E L +
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPEALRCV 266
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 25.6 bits (55), Expect = 6.6
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 41 ICDNPNIFAGKTVLDVGTGTG 61
I N G+ ++++G G
Sbjct: 13 IVSAINPQKGQAMVEIGPGLA 33
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 24.9 bits (54), Expect = 6.8
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 171 EEEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEE 226
E K+ E + + + + +N EEE +++++ K + E ++E
Sbjct: 77 SEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 25.6 bits (55), Expect = 6.8
Identities = 9/65 (13%), Positives = 30/65 (46%)
Query: 177 EDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQKKNEEE 236
D EE+ + +E+ +++E ++E++ + + +++ + E+ ++K E
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELR 113
Query: 237 EEEEE 241
+
Sbjct: 114 AQYVV 118
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 197
Score = 25.1 bits (54), Expect = 6.9
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 43 DNPNIFAGKTVLDVGTGTGK-SILLQGHGVDHHSFCT 78
N G++V+D GTG G + G + +
Sbjct: 42 YNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFD 78
>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 235
Score = 25.1 bits (53), Expect = 8.4
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 3/131 (2%)
Query: 43 DNPNIFAGKTVLDVGTG-TGKSILLQGHGVDHHSFCTKVHPLDHYAPQYLILEVIQNKIE 101
P F+G+ V +GTG +G + Q + H+A + +
Sbjct: 25 HEPVDFSGQRVGVIGTGSSGIQVSPQIA--KQAAELFVFQRTPHFAVPARNAPLDPEFLA 82
Query: 102 NVELPEKVDIIVSEWMGFYLLHESMIDSVIFARDKFLKPEGVMYPYKCILHSAPSYSPEI 161
+++ S S + D+ L Y + +Y +
Sbjct: 83 DLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDIL 142
Query: 162 FKFWENIAGEE 172
N E
Sbjct: 143 RDRDANERVAE 153
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 25.4 bits (55), Expect = 8.5
Identities = 16/79 (20%), Positives = 28/79 (35%)
Query: 172 EEKKEEDEIEEEENEEEEEVKQKKNKEEEEEEEEKKEEDEIEKEEGENEEEEEEEVVKQK 231
E + E + E E ++ K E + + EIE E + + E+ +
Sbjct: 289 AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE 348
Query: 232 KNEEEEEEEEVLIKLEEEE 250
+ E E E + KL
Sbjct: 349 LPKLEAEVEALSEKLRGAR 367
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 25.0 bits (53), Expect = 8.9
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 52 TVLDVGTGTGKSILLQGHG 70
++V G +I+L+ +G
Sbjct: 5 HFINVQEGGSDAIILESNG 23
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.306 0.130 0.357
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,023,697
Number of extensions: 55528
Number of successful extensions: 905
Number of sequences better than 10.0: 1
Number of HSP's gapped: 641
Number of HSP's successfully gapped: 283
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 52 (24.1 bits)