BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9775
(133 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8IRG6|SPT16_DROME FACT complex subunit spt16 OS=Drosophila melanogaster GN=dre4 PE=1
SV=2
Length = 1083
Score = 185 bits (470), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 82/100 (82%), Positives = 93/100 (93%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
VE +TK +EFDTPFRELGFPGAP+RSTV LQPTSG LVNLTEWPPFVI+L+DVELVHFE
Sbjct: 793 VETMTKSVVEFDTPFRELGFPGAPFRSTVTLQPTSGSLVNLTEWPPFVITLDDVELVHFE 852
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
RVQF L+NFDM+FVFK+Y++KV M+NAIPMNMLDHVKEWL
Sbjct: 853 RVQFHLRNFDMIFVFKEYNKKVAMVNAIPMNMLDHVKEWL 892
>sp|Q9Y5B9|SP16H_HUMAN FACT complex subunit SPT16 OS=Homo sapiens GN=SUPT16H PE=1 SV=1
Length = 1047
Score = 163 bits (412), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/100 (72%), Positives = 86/100 (86%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS LVN TEWPPFV++L++VEL+HFE
Sbjct: 787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
RVQF LKNFDMV V+KDY +KV MINAIP+ LD +KEWL
Sbjct: 847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886
>sp|Q920B9|SP16H_MOUSE FACT complex subunit SPT16 OS=Mus musculus GN=Supt16h PE=1 SV=2
Length = 1047
Score = 163 bits (412), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/100 (72%), Positives = 86/100 (86%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
VE +TK+E+EF+ PFR+LGF GAPYRST LLQPTS LVN TEWPPFV++L++VEL+HFE
Sbjct: 787 VEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFE 846
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
RVQF LKNFDMV V+KDY +KV MINAIP+ LD +KEWL
Sbjct: 847 RVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWL 886
>sp|Q9W603|SP16H_XENLA FACT complex subunit SPT16 OS=Xenopus laevis GN=supt16h PE=1 SV=2
Length = 1035
Score = 162 bits (409), Expect = 8e-40, Method: Composition-based stats.
Identities = 72/100 (72%), Positives = 86/100 (86%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
VE +TK+++EF+ PFR+LGF GAPYRST LLQPTS LVN TEWPPFV++L++VELVHFE
Sbjct: 789 VESLTKEDLEFEIPFRDLGFNGAPYRSTCLLQPTSSSLVNTTEWPPFVVTLDEVELVHFE 848
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
RVQF LKNFDMV V+K+Y +KV MINAIPM LD +KEWL
Sbjct: 849 RVQFHLKNFDMVIVYKEYGKKVTMINAIPMASLDPIKEWL 888
>sp|Q61E63|SPT16_CAEBR FACT complex subunit spt-16 OS=Caenorhabditis briggsae GN=spt-16
PE=3 SV=1
Length = 1034
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 76/100 (76%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
V +T + EFD+PF LGF G P+RS L+PT+ CLVNLTEWPPF+++L +VELVHFE
Sbjct: 786 VSRLTNDQFEFDSPFAGLGFFGVPFRSATTLKPTASCLVNLTEWPPFIVTLSEVELVHFE 845
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
RV QLKNFDMVF+FKDY K M+ IPM+ +D +KEWL
Sbjct: 846 RVSLQLKNFDMVFIFKDYKMKTQMVAQIPMSSIDKIKEWL 885
>sp|Q9N5R9|SPT16_CAEEL FACT complex subunit spt-16 OS=Caenorhabditis elegans GN=spt-16
PE=3 SV=1
Length = 1030
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 75/100 (75%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
V +T + EFD+PF LGF G PYRS L+PT+ CLVNLTEWP F+++L +VELVHFE
Sbjct: 787 VSRLTNDQFEFDSPFAGLGFFGVPYRSATTLKPTASCLVNLTEWPTFIVTLSEVELVHFE 846
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
RV QLKNFDMVF+FKDY K M+ IPM+ +D +KEWL
Sbjct: 847 RVSLQLKNFDMVFIFKDYKIKPQMVAQIPMSSIDKIKEWL 886
>sp|Q6C931|SPT16_YARLI FACT complex subunit SPT16 OS=Yarrowia lipolytica (strain CLIB 122
/ E 150) GN=SPT16 PE=3 SV=1
Length = 1003
Score = 130 bits (327), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/110 (53%), Positives = 81/110 (73%), Gaps = 4/110 (3%)
Query: 10 VEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFE 69
+ + ++++ DTPFRELGF G P+RS VLLQP++ CLV L + P VI+L ++EL H E
Sbjct: 793 ISEASDRKVDVDTPFRELGFHGVPFRSNVLLQPSADCLVQLIDTPFSVITLGEIELAHLE 852
Query: 70 RVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLK----PHSHG 115
RVQF LKNFD+VFV+KD++R V IN+IP++ LD VK+WL P+S G
Sbjct: 853 RVQFGLKNFDLVFVYKDFNRPVTHINSIPVDQLDAVKDWLNEVEIPYSEG 902
>sp|O94267|SPT16_SCHPO FACT complex subunit spt16 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=spt16 PE=1 SV=1
Length = 1019
Score = 130 bits (326), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/103 (56%), Positives = 74/103 (71%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A + ++ IE D PFREL F G P+RS VLLQPT+ CLV LT+ P VI+L ++E+
Sbjct: 791 AEKIAEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCLVQLTDTPFTVITLNEIEIA 850
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
H ERVQF LKNFD+VF+F+D+ R + IN IPM LD+VKEWL
Sbjct: 851 HLERVQFGLKNFDLVFIFQDFRRPPIHINTIPMEQLDNVKEWL 893
>sp|Q6BXE5|SPT16_DEBHA FACT complex subunit SPT16 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SPT16 PE=3 SV=2
Length = 1033
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A ++ + ++ D PFRELGF G P+RS+VL PT CL+ L + P V++LE++E+
Sbjct: 812 AELISDSSSGMVDLDIPFRELGFSGVPFRSSVLCMPTRDCLIQLIDPPYLVVTLEEIEIA 871
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
H ERVQF LKNFD+VFVFKD+++ VV IN IPM +L+ VK WL
Sbjct: 872 HLERVQFGLKNFDLVFVFKDFNKSVVHINTIPMELLEDVKSWL 914
>sp|Q5A1D5|SPT16_CANAL FACT complex subunit SPT16 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=SPT16 PE=3 SV=1
Length = 1060
Score = 123 bits (308), Expect = 4e-28, Method: Composition-based stats.
Identities = 54/103 (52%), Positives = 74/103 (71%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A ++ + ++ D PFRELGF G P+RS+VL PT CLV L + P V++LE++E+
Sbjct: 833 AELIADSSHGMVDLDIPFRELGFQGVPFRSSVLCVPTRDCLVQLIDPPYLVVTLEEIEIA 892
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
H ERVQF LKNFD+VFVFKD+++ VV IN IP+ +L+ VK WL
Sbjct: 893 HLERVQFGLKNFDLVFVFKDFNKPVVHINTIPVELLEDVKSWL 935
>sp|Q5B2X8|SPT16_EMENI FACT complex subunit spt16 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=spt16 PE=3
SV=2
Length = 1019
Score = 122 bits (307), Expect = 5e-28, Method: Composition-based stats.
Identities = 56/92 (60%), Positives = 69/92 (75%)
Query: 18 IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKN 77
++ D PFRE+GF G P RS VL+QPT+ LV LTE P VISL ++E+ H ERVQF LKN
Sbjct: 804 VDVDIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVISLNEIEIAHLERVQFGLKN 863
Query: 78 FDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
FD+VFVFKD+HR V IN IP+ L+ VK+WL
Sbjct: 864 FDLVFVFKDFHRAPVHINTIPVENLEGVKDWL 895
>sp|Q4P2U5|SPT16_USTMA FACT complex subunit SPT16 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SPT16 PE=3 SV=1
Length = 1032
Score = 122 bits (305), Expect = 8e-28, Method: Composition-based stats.
Identities = 54/103 (52%), Positives = 73/103 (70%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A + ++ + D P+RELGF G P+R+ VLLQPT+ CLV+LT+ P VI+L DVE+V
Sbjct: 795 AERIAEASEGRVSVDVPYRELGFNGVPFRTNVLLQPTTDCLVHLTDPPFLVITLTDVEIV 854
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
H ERVQF L++FDMVFVF D+ R + + +IP LD VK+WL
Sbjct: 855 HLERVQFGLQSFDMVFVFSDFSRAPMHVTSIPTTSLDDVKQWL 897
>sp|Q2UBF1|SPT16_ASPOR FACT complex subunit spt16 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=spt16 PE=3 SV=1
Length = 1042
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 7 ASMVEHVTKQE-IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVEL 65
A + K E ++ D PFRE+GF G P RS VL+QPT+ LV LTE P VI+L ++E+
Sbjct: 813 AEKIADAGKDEGVDVDIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEI 872
Query: 66 VHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
H ERVQF LKNFD+VFVFKD+HR V +N IP+ L+ VK+WL
Sbjct: 873 AHLERVQFGLKNFDLVFVFKDFHRPPVHVNTIPVESLEGVKDWL 916
>sp|Q4WJ02|SPT16_ASPFU FACT complex subunit spt16 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=spt16
PE=3 SV=1
Length = 1019
Score = 121 bits (304), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/92 (59%), Positives = 69/92 (75%)
Query: 18 IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKN 77
++ D PFRE+GF G P RS VL+QPT+ LV LTE P VI+L ++E+ H ERVQF LKN
Sbjct: 803 VDVDIPFREIGFTGVPNRSNVLIQPTTDALVQLTEPPFLVITLNEIEIAHLERVQFGLKN 862
Query: 78 FDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
FD+VFVFKD+HR V IN IP+ L+ VK+WL
Sbjct: 863 FDLVFVFKDFHRAPVHINTIPVESLEGVKDWL 894
>sp|P0CQ22|SPT16_CRYNJ FACT complex subunit SPT16 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT16 PE=3 SV=1
Length = 1035
Score = 120 bits (301), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 2 RIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLE 61
RI T A + E+E D PFRELGF G P++S V L PT+ CL++++E P VI+L
Sbjct: 800 RIETAA----QAQQFELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLS 855
Query: 62 DVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
+VE+VH ERVQF LKNFDMVFV +D + V IN+IP+ LD+VKEWL
Sbjct: 856 EVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWL 903
>sp|P0CQ23|SPT16_CRYNB FACT complex subunit SPT16 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SPT16 PE=3
SV=1
Length = 1035
Score = 120 bits (301), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 2 RIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLE 61
RI T A + E+E D PFRELGF G P++S V L PT+ CL++++E P VI+L
Sbjct: 800 RIETAA----QAQQFELEVDVPFRELGFNGVPHKSIVALLPTTNCLIHISELPFTVITLS 855
Query: 62 DVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
+VE+VH ERVQF LKNFDMVFV +D + V IN+IP+ LD+VKEWL
Sbjct: 856 EVEIVHLERVQFGLKNFDMVFVLQDLKKPPVHINSIPVAHLDNVKEWL 903
>sp|Q4HYB8|SPT16_GIBZE FACT complex subunit SPT16 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT16 PE=3 SV=1
Length = 1034
Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/92 (57%), Positives = 67/92 (72%)
Query: 18 IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKN 77
IE D P RELGF G P+RS V +QPT+ CL+ + E P VI++E+VE+ H ERVQF LKN
Sbjct: 812 IEVDMPIRELGFHGVPFRSNVFVQPTTDCLIQVVEPPFMVITIEEVEIAHLERVQFGLKN 871
Query: 78 FDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
FDMVFVFKD+ R +N IP+ LD VK++L
Sbjct: 872 FDMVFVFKDFTRAPYHVNTIPVEFLDQVKDYL 903
>sp|Q8X0X6|SPT16_NEUCR FACT complex subunit spt-16 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=spt-16 PE=3 SV=1
Length = 1032
Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/101 (55%), Positives = 70/101 (69%)
Query: 18 IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKN 77
IE D P R+LGF G P+RS V +QPT+ CL+ +TE P VI+LED+E+ H ERVQF LKN
Sbjct: 811 IEVDMPLRDLGFNGVPFRSNVYIQPTTECLIQITEPPFMVITLEDIEVAHLERVQFGLKN 870
Query: 78 FDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSE 118
FD+VFVFKD+ R IN IP+ L+ VKE+L SE
Sbjct: 871 FDLVFVFKDFTRPPYHINTIPVESLEDVKEFLDSSDIAFSE 911
>sp|Q8H6B1|SPT16_MAIZE FACT complex subunit SPT16 OS=Zea mays GN=SPT16 PE=2 SV=1
Length = 1055
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 66/93 (70%)
Query: 17 EIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLK 76
++EFD P RELGF G PY+++ + PTS CLV L E P V+SL ++E+V+ ERV F K
Sbjct: 807 DLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTK 866
Query: 77 NFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
NFDM VFKD+ + V+ I++IP LD +KEWL
Sbjct: 867 NFDMAIVFKDFKKDVLRIDSIPSASLDAIKEWL 899
>sp|Q7X923|SPT16_ORYSJ FACT complex subunit SPT16 OS=Oryza sativa subsp. japonica GN=SPT16
PE=2 SV=2
Length = 1056
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 66/93 (70%)
Query: 17 EIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLK 76
++EFD P RELGF G PY+++ + PTS CLV L E P V++L ++E+V+ ERV F K
Sbjct: 807 DLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTK 866
Query: 77 NFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
NFDM VFKD+ + V+ I++IP LD +KEWL
Sbjct: 867 NFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWL 899
>sp|O82491|SPT16_ARATH FACT complex subunit SPT16 OS=Arabidopsis thaliana GN=SPT16 PE=1
SV=1
Length = 1074
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 68/93 (73%)
Query: 17 EIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLK 76
++EFD P RELGF G P++++ + PTS CLV L E+P V+SL ++E+V+ ERV F K
Sbjct: 821 DLEFDQPLRELGFHGVPHKTSAFIIPTSSCLVELIEYPFLVVSLSEIEIVNLERVGFGQK 880
Query: 77 NFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
NFDM +FKD+ + V+ ++++P + L+ +KEWL
Sbjct: 881 NFDMAIIFKDFKKDVLRVDSVPTSSLEGIKEWL 913
>sp|Q756A7|SPT16_ASHGO FACT complex subunit SPT16 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SPT16 PE=3 SV=2
Length = 1031
Score = 108 bits (271), Expect = 8e-24, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 65/103 (63%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A + + +E D PFR+LGF G P RS V PT CL+ L E P V++L +VE+
Sbjct: 808 AEAIAEASNGLVEVDHPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVVNLSEVEIC 867
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
ERVQF LKNFDMVFV+KD+ + V IN IP+ L+ +K WL
Sbjct: 868 ILERVQFGLKNFDMVFVYKDFTKPVTHINTIPIEQLEFIKSWL 910
>sp|Q54S43|SPT16_DICDI FACT complex subunit SPT16 OS=Dictyostelium discoideum GN=spt16
PE=3 SV=1
Length = 1072
Score = 108 bits (269), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/92 (54%), Positives = 66/92 (71%)
Query: 18 IEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKN 77
+EFD P+RELGF G P STV +QP+ CL+++ E P FV++L+DVE+ FER LKN
Sbjct: 813 LEFDVPYRELGFYGVPNVSTVFIQPSVHCLLSILEPPFFVLTLDDVEIACFERAIRSLKN 872
Query: 78 FDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
FD+ FVFKDY+R + I+ IP N + VKEWL
Sbjct: 873 FDLSFVFKDYNRPPIRISVIPRNYFETVKEWL 904
>sp|P32558|SPT16_YEAST FACT complex subunit SPT16 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPT16 PE=1 SV=1
Length = 1035
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/103 (48%), Positives = 67/103 (65%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A + + + + FR+LGF G P RS V PT+ CLV L E P VI+LE+VE+
Sbjct: 812 ADAIAEASNGLLTVENTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVINLEEVEIC 871
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
ERVQF LKNFDMVFV+KD+++ V IN +P+ LD +K+WL
Sbjct: 872 ILERVQFGLKNFDMVFVYKDFNKPVTHINTVPIESLDFLKQWL 914
>sp|Q00976|SPT16_KLULA FACT complex subunit SPT16 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=SPT16 PE=3 SV=2
Length = 1033
Score = 105 bits (263), Expect = 7e-23, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A + + ++ D+PFR+LGF G P RS V PT CL+ L E P VI+L +VE+
Sbjct: 809 AEAIAEASDGLLDVDSPFRDLGFQGVPSRSAVFCMPTRDCLIQLVEPPFLVINLNEVEIC 868
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLK----PHSHGS---SES 119
ERVQF LKNFDMVFV+KD + V IN +P+ L+ +K WL P++ + + S
Sbjct: 869 ILERVQFGLKNFDMVFVYKDLTKPVSHINTVPIEQLEFIKTWLTDVDIPYTVSTINLNWS 928
Query: 120 TDMSSLSSNQMSF 132
T M SL + F
Sbjct: 929 TIMKSLQDDPHQF 941
>sp|Q6FWT4|SPT16_CANGA FACT complex subunit SPT16 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SPT16
PE=3 SV=1
Length = 1027
Score = 105 bits (262), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/103 (46%), Positives = 67/103 (65%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELV 66
A + + + ++ FR+LGF G P RS V PT+ CLV L E P V++LE++E+
Sbjct: 808 ADAIAEASNGLVSVESTFRDLGFQGVPNRSAVFCMPTTDCLVQLIEPPFLVVNLEEIEVA 867
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109
ERVQF LKNFD+VFV+KD+ + V IN IP+ LD +K+WL
Sbjct: 868 ILERVQFGLKNFDLVFVYKDFKKPVTHINTIPIESLDFLKQWL 910
>sp|P0CF65|CRBN_CHICK Protein cereblon OS=Gallus gallus GN=CRBN PE=2 SV=1
Length = 445
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 47 LVNLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
+LT WPP++ SL D E + ERV+ QL +D
Sbjct: 236 CASLTSWPPWLYSLYDAETL-MERVKRQLHEWD 267
>sp|P25731|CSOB_ECOLX CS1 fimbrial subunit B OS=Escherichia coli GN=csoB PE=4 SV=1
Length = 238
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 14 TKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQ 72
TK+E E DTP E G P S V+L V L++ IS EDV V+FE ++
Sbjct: 60 TKEEYEVDTPNWEGGLVTTP--SKVILPGGGSKSVRLSQLKD--ISSEDVYRVYFESIK 114
>sp|Q9UUF7|COPB_SCHPO Coatomer subunit beta OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=sec26 PE=3 SV=1
Length = 940
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 90 KVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMS-----SLSSNQ 129
K+V++N IP+N++D++K P S S T+ +SSN+
Sbjct: 814 KIVVLNGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNE 858
>sp|P74456|RRF_SYNY3 Ribosome-recycling factor OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=frr PE=3 SV=1
Length = 182
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 IATG---ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQP 42
I TG AS+++ +T + +TP + L G P ST+++QP
Sbjct: 24 IRTGRANASLLDRITVEYYGAETPLKSLATIGTPDASTIVIQP 66
>sp|Q8BLN6|UNC80_MOUSE Protein unc-80 homolog OS=Mus musculus GN=Unc80 PE=1 SV=2
Length = 3261
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 2 RIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVN-LTEWPPFVISL 60
R+ GA + + I F P LG P P + SG + + + E S
Sbjct: 1664 RMEEGAQQIFKIPPPSINFTLPSPVLGMPSVPMFDPPWVPQCSGSVQDPINEDQSKSFSA 1723
Query: 61 EDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSEST 120
V H +R + LKN K R+ +I AIP+ + P+S E
Sbjct: 1724 RAVSRSH-QRAEHILKNLQQEEEKKRLGREASLITAIPITQEACYEPTCTPNSEPEEEVE 1782
Query: 121 DMSSLSSNQMS 131
++++L+S ++S
Sbjct: 1783 EVANLTSRRLS 1793
>sp|Q8N2C7|UNC80_HUMAN Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=2 SV=2
Length = 3258
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 2/131 (1%)
Query: 2 RIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVN-LTEWPPFVISL 60
R+ GA + + I F P LG P P + SG + + + E S
Sbjct: 1661 RMEEGAQQIFKIPPPSINFTLPSPVLGMPSVPMFDPPWVPQCSGSVQDPINEDQSKSFSA 1720
Query: 61 EDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSEST 120
V H +R + LKN K R+ +I AIP+ + P+S E
Sbjct: 1721 RAVSRSH-QRAEHILKNLQQEEEKKRLGREASLITAIPITQEACYEPTCTPNSEPEEEVE 1779
Query: 121 DMSSLSSNQMS 131
++++L+S ++S
Sbjct: 1780 EVTNLASRRLS 1790
>sp|B8HL79|RRF_CYAP4 Ribosome-recycling factor OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=frr PE=3 SV=1
Length = 182
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 3 IATG---ASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVIS 59
I TG S+++ VT + +TP R L P ST+ +QP +NL E IS
Sbjct: 24 IRTGRANTSLLDRVTVEYYGAETPLRSLANISTPDSSTIAIQPFDRNSLNLIEK---AIS 80
Query: 60 LEDVELV 66
+ D+ L
Sbjct: 81 MSDLGLT 87
>sp|Q96SW2|CRBN_HUMAN Protein cereblon OS=Homo sapiens GN=CRBN PE=1 SV=1
Length = 442
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 49 NLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
NLT WP ++ SL D E + +R++ QL+ +D
Sbjct: 236 NLTSWPRWLYSLYDAETL-MDRIKKQLREWD 265
>sp|Q5R6Y2|CRBN_PONAB Protein cereblon OS=Pongo abelii GN=CRBN PE=2 SV=1
Length = 429
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 49 NLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
NLT WP ++ SL D E + +R++ QL+ +D
Sbjct: 223 NLTSWPRWLYSLYDAETL-MDRIKKQLREWD 252
>sp|Q8C7D2|CRBN_MOUSE Protein cereblon OS=Mus musculus GN=Crbn PE=2 SV=1
Length = 445
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 49 NLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
NLT WP ++ SL D E + +R++ QL+ +D
Sbjct: 239 NLTSWPRWLYSLYDAETL-MDRIKKQLREWD 268
>sp|Q56AP7|CRBN_RAT Protein cereblon OS=Rattus norvegicus GN=Crbn PE=1 SV=1
Length = 445
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 49 NLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
NLT WP ++ SL D E + +R++ QL+ +D
Sbjct: 239 NLTSWPRWLYSLYDAETL-MDRIKKQLREWD 268
>sp|Q0P564|CRBN_BOVIN Protein cereblon OS=Bos taurus GN=CRBN PE=2 SV=1
Length = 444
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 49 NLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
NLT WP ++ SL D E + +R++ QL+ +D
Sbjct: 238 NLTSWPRWLYSLYDAETL-MDRIKKQLREWD 267
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,389,750
Number of Sequences: 539616
Number of extensions: 1695243
Number of successful extensions: 3889
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3861
Number of HSP's gapped (non-prelim): 40
length of query: 133
length of database: 191,569,459
effective HSP length: 99
effective length of query: 34
effective length of database: 138,147,475
effective search space: 4697014150
effective search space used: 4697014150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)