Query psy9775
Match_columns 133
No_of_seqs 105 out of 150
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 19:17:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1189|consensus 100.0 4.3E-58 9.2E-63 420.9 9.1 121 1-121 724-844 (960)
2 COG5406 Nucleosome binding fac 100.0 2.6E-51 5.6E-56 373.3 10.4 120 2-121 777-896 (1001)
3 PF08512 Rtt106: Histone chape 100.0 8.3E-29 1.8E-33 175.9 7.1 90 29-118 1-94 (95)
4 KOG0526|consensus 96.1 0.017 3.7E-07 53.6 6.8 99 18-119 326-433 (615)
5 PF13104 DUF3956: Protein of u 94.8 0.039 8.3E-07 35.7 3.1 27 44-70 2-28 (45)
6 COG5165 POB3 Nucleosome-bindin 93.4 0.21 4.5E-06 45.3 6.0 77 38-117 361-440 (508)
7 PF09186 DUF1949: Domain of un 80.3 0.22 4.9E-06 30.6 -1.7 45 67-111 7-51 (56)
8 PF09494 Slx4: Slx4 endonuclea 78.4 1.3 2.8E-05 29.4 1.4 17 101-117 46-62 (64)
9 PF10281 Ish1: Putative stress 77.9 1.1 2.4E-05 26.9 0.9 20 101-120 5-24 (38)
10 PF03703 bPH_2: Bacterial PH d 68.0 12 0.00027 23.8 4.1 54 56-109 25-80 (80)
11 cd05568 PTS_IIB_bgl_like PTS_I 53.9 16 0.00035 23.6 2.8 38 74-111 43-84 (85)
12 PF12123 Amidase02_C: N-acetyl 50.1 9.3 0.0002 24.6 1.1 20 98-117 25-44 (45)
13 TIGR00787 dctP tripartite ATP- 48.0 22 0.00048 28.2 3.2 26 3-28 15-41 (257)
14 PF08262 Lem_TRP: Leucophaea m 43.9 10 0.00022 17.8 0.4 7 26-32 3-9 (10)
15 cd03027 GRX_DEP Glutaredoxin ( 42.6 14 0.00031 23.6 1.2 19 101-119 13-31 (73)
16 PF00462 Glutaredoxin: Glutare 40.9 19 0.0004 22.2 1.5 17 103-119 13-29 (60)
17 PF13848 Thioredoxin_6: Thiore 39.8 34 0.00073 24.7 2.9 43 73-117 37-79 (184)
18 TIGR01689 EcbF-BcbF capsule bi 39.1 14 0.00031 27.6 0.9 24 95-118 59-82 (126)
19 cd03418 GRX_GRXb_1_3_like Glut 38.9 19 0.00041 22.7 1.3 19 102-120 13-31 (75)
20 PF10087 DUF2325: Uncharacteri 35.3 28 0.00061 24.0 1.8 41 71-120 42-82 (97)
21 TIGR01898 cas_TM1791_cmr6 CRIS 34.7 51 0.0011 25.5 3.3 33 66-110 124-156 (176)
22 TIGR02194 GlrX_NrdH Glutaredox 32.7 26 0.00057 22.5 1.2 18 102-119 12-29 (72)
23 cd03029 GRX_hybridPRX5 Glutare 31.7 26 0.00056 22.3 1.0 19 102-120 14-32 (72)
24 PF03480 SBP_bac_7: Bacterial 30.2 53 0.0011 26.3 2.8 102 3-106 15-135 (286)
25 PF06967 Mo-nitro_C: Mo-depend 28.8 28 0.0006 25.4 0.9 15 101-115 2-16 (84)
26 cd05566 PTS_IIB_galactitol PTS 28.2 91 0.002 20.7 3.3 37 75-111 46-87 (89)
27 cd04724 Tryptophan_synthase_al 27.5 56 0.0012 26.3 2.5 30 3-32 16-45 (242)
28 PF13986 DUF4224: Domain of un 27.1 46 0.00099 21.1 1.6 20 103-122 18-37 (47)
29 PRK11568 hypothetical protein; 26.8 13 0.00028 30.2 -1.2 48 65-112 145-192 (204)
30 COG3737 Uncharacterized conser 26.5 7.1 0.00015 30.3 -2.6 38 29-73 28-65 (127)
31 TIGR02190 GlrX-dom Glutaredoxi 26.4 36 0.00077 22.4 1.0 19 101-119 20-38 (79)
32 KOG0481|consensus 26.4 36 0.00079 32.7 1.4 16 75-90 502-517 (729)
33 PRK14014 putative acyltransfer 26.3 75 0.0016 26.7 3.2 25 87-111 245-281 (301)
34 PLN03107 eukaryotic translatio 25.9 1.1E+02 0.0023 24.1 3.8 53 60-112 77-134 (159)
35 PF02244 Propep_M14: Carboxype 24.9 52 0.0011 21.2 1.6 23 96-118 39-61 (74)
36 TIGR00257 IMPACT_YIGZ uncharac 24.6 23 0.00051 28.7 -0.1 48 65-112 145-192 (204)
37 PF05046 Img2: Mitochondrial l 23.3 42 0.0009 23.6 1.0 17 97-113 70-86 (87)
38 PF12949 HeH: HeH/LEM domain; 23.2 19 0.0004 22.0 -0.7 22 102-123 6-27 (35)
39 cd02066 GRX_family Glutaredoxi 23.1 51 0.0011 19.5 1.2 21 101-121 12-32 (72)
40 cd02949 TRX_NTR TRX domain, no 22.9 1E+02 0.0022 20.5 2.7 35 73-110 63-97 (97)
41 PF13361 UvrD_C: UvrD-like hel 22.3 91 0.002 24.2 2.8 38 74-123 74-111 (351)
42 PRK10638 glutaredoxin 3; Provi 21.8 49 0.0011 21.8 1.0 19 101-119 14-32 (83)
43 PRK10329 glutaredoxin-like pro 21.3 55 0.0012 22.1 1.2 18 103-120 15-32 (81)
44 PF10691 DUF2497: Protein of u 21.0 38 0.00082 23.6 0.3 8 104-111 46-53 (73)
45 cd03036 ArsC_like Arsenate Red 20.8 55 0.0012 23.2 1.2 18 102-119 12-29 (111)
No 1
>KOG1189|consensus
Probab=100.00 E-value=4.3e-58 Score=420.87 Aligned_cols=121 Identities=58% Similarity=1.020 Sum_probs=119.6
Q ss_pred ChhHHHHHHHHhhcCCceEEeeccccCCccCccccceEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeE
Q psy9775 1 MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDM 80 (133)
Q Consensus 1 ~~Fk~F~~kve~~~~~~~efdiP~reLgF~GVP~rs~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDm 80 (133)
|+|++||++|+++++..++||+|||+|||+||||||+|+||||++|||+|||||||||||+|||||||||||||+|||||
T Consensus 724 ~~FksF~~kv~~~~~~~~efd~pfr~lGF~GvP~rssv~i~pTs~cLV~LtE~P~~VvtL~eVEiv~~ERV~f~lKnfDm 803 (960)
T KOG1189|consen 724 MAFKSFAEKVAEATESELEFDVPFRELGFNGVPFRSSVFIQPTSSCLVNLTEWPFFVVTLEEVEIVNLERVQFGLKNFDM 803 (960)
T ss_pred HHHHHHHHHHHhhhccceeeccchhhcCcCCCCccceeeeecchhhhhccccCCceEEeecceeeeeeeeeeeccccceE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCceEEeeeeCCChHHHHhhhccCCceeeeccc
Q psy9775 81 VFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTD 121 (133)
Q Consensus 81 vfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~~~ 121 (133)
|||||||+|+|+||++|||++||+||||||+|||+||||++
T Consensus 804 vfIfKd~~k~v~~i~svp~~sLd~iKEWLdscDI~y~Eg~~ 844 (960)
T KOG1189|consen 804 VFIFKDFKKKVTMINSVPMESLDKLKEWLDSCDIKYTEGVQ 844 (960)
T ss_pred EEEeccccccceeeeccchhhhhHHHHhhhcccceeecccc
Confidence 99999999999999999999999999999999999999987
No 2
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=100.00 E-value=2.6e-51 Score=373.31 Aligned_cols=120 Identities=47% Similarity=0.837 Sum_probs=118.5
Q ss_pred hhHHHHHHHHhhcCCceEEeeccccCCccCccccceEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeEE
Q psy9775 2 RIATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMV 81 (133)
Q Consensus 2 ~Fk~F~~kve~~~~~~~efdiP~reLgF~GVP~rs~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDmv 81 (133)
+||.||++|++++++.++|++|||+|||+|||+||+|+|+||++|||+|+|+|||||||+||||||||||||||||||||
T Consensus 777 eFksFa~~Iaeas~gri~~~~~fr~lgF~GVPfRs~V~~~pTtdCLVqL~e~Pf~VitLeevEi~~lERVqfglKnfD~v 856 (1001)
T COG5406 777 EFKSFASSIAEASEGRIEFKVQFRKLGFYGVPFRSSVMIKPTTDCLVQLDEAPFFVITLEEVEIVNLERVQFGLKNFDVV 856 (1001)
T ss_pred HHHHHHHHHHHhhcCceEEeeechhccccCCccccceeeecchhheeeccCCceEEEEecceeEEeeeeEEeecccceEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCceEEeeeeCCChHHHHhhhccCCceeeeccc
Q psy9775 82 FVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTD 121 (133)
Q Consensus 82 fIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~~~ 121 (133)
||||||.||++|||+||+++||++|+||+||||+||||+.
T Consensus 857 Fi~~df~rp~vhIntvpvesld~lKewLds~di~f~e~~~ 896 (1001)
T COG5406 857 FILRDFYRPLVHINTVPVESLDKLKEWLDSNDILFMETSA 896 (1001)
T ss_pred EEeccccCCcceeccccHHHHHHHHHHhhhcCceeEeccc
Confidence 9999999999999999999999999999999999999975
No 3
>PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families. It is found in Rtt106p, which is a histone chaperone involved in heterochromatin-mediated silencing []. It is also found in genes annotated as transcription factors/regulators. This domain is the C-terminal domain of yeast Spt16p P32558 from SWISSPROT, which is a subunit of the heterodimeric yeast FACT complex (Spt16p-Pob3p, IPR000969 from INTERPRO) []. In addition Spt16p and its relatives, in this entry, are described as non-peptidase homologues belonging to the MEROPS peptidase family M24. The FACT complex facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. ; PDB: 3TW1_A 3GYO_A 3TO1_A 3FSS_A 3TVV_B 3GYP_A 2GCJ_D 2GCL_A.
Probab=99.95 E-value=8.3e-29 Score=175.85 Aligned_cols=90 Identities=37% Similarity=0.593 Sum_probs=82.5
Q ss_pred ccCcccc---ceEEEeeCcccceeeeccCcEEEEeCceeEEEEeee-eccccceeEEEEeecCCCCceEEeeeeCCChHH
Q psy9775 29 FPGAPYR---STVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERV-QFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDH 104 (133)
Q Consensus 29 F~GVP~r---s~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV-~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~ 104 (133)
|+|||.+ +.++|+|+.+||+.+.+.|+++++++|||.|+|||| +.+.|||||++++|||++++.++++||.++++.
T Consensus 1 f~~V~c~~ka~~g~L~pl~~~l~f~~~kP~~~i~~~dI~~v~feRv~~~~~ktFDl~v~~k~~~~~~~~fs~I~~~e~~~ 80 (95)
T PF08512_consen 1 FYGVKCSYKANEGFLYPLEKCLLFGLEKPPFVIPLDDIESVEFERVSSFSSKTFDLVVILKDYEGPPHEFSSIDREEYDN 80 (95)
T ss_dssp -EEEEEEETTEEEEEEEESSEEEEECSSS-EEEEGGGEEEEEEE--ESSSSSEEEEEEEETT-TS-EEEEEEEEGGGHHH
T ss_pred CCceeEeccccCEEEEEccceEEEecCCCeEEEEhhHeeEEEEEecccCcceEEEEEEEEecCCCCcEEEeeECHHHHHH
Confidence 7899999 999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHhhhccCCceeee
Q psy9775 105 VKEWLKPHSHGSSE 118 (133)
Q Consensus 105 IKeWL~s~dI~y~E 118 (133)
|++||++++|+|++
T Consensus 81 l~~~l~~~~i~~~~ 94 (95)
T PF08512_consen 81 LKDFLKSKNIKIKN 94 (95)
T ss_dssp HHHHHHHCCHHCCC
T ss_pred HHHHHHHCCCEeec
Confidence 99999999999975
No 4
>KOG0526|consensus
Probab=96.09 E-value=0.017 Score=53.57 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=82.9
Q ss_pred eEEeeccccCCccCccc-----cc-eEEEeeCcccceeeeccCcEEEEeCceeEEEEeee---eccccceeEEEEeecCC
Q psy9775 18 IEFDTPFRELGFPGAPY-----RS-TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERV---QFQLKNFDMVFVFKDYH 88 (133)
Q Consensus 18 ~efdiP~reLgF~GVP~-----rs-~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV---~f~lKnFDmvfIfKDy~ 88 (133)
.+.-+|=+=+|=.|.|. |. .-.|+|--.|..=|.- |++-|.++||-.|||+|. +-..++|||-+..|-=
T Consensus 326 rKit~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFlFl~K-P~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~lk~g- 403 (615)
T KOG0526|consen 326 RKITVPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFLFLPK-PPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITLKSG- 403 (615)
T ss_pred ceeeccccccccCCCceeeeeecccCceEeecccceEeecC-CceEeeccceeeEEEEeccCCccceeeEEEEEEEcCC-
Confidence 55677877777777664 32 4579999999998885 667789999999999999 5778999999999964
Q ss_pred CCceEEeeeeCCChHHHHhhhccCCceeeec
Q psy9775 89 RKVVMINAIPMNMLDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 89 k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~ 119 (133)
.....++|..+--.++-++|++-+|+-...
T Consensus 404 -~~~tFs~i~keE~~~L~~fl~sK~lki~N~ 433 (615)
T KOG0526|consen 404 -TSYTFSNISKEEYGKLFDFLNSKGLKIRNE 433 (615)
T ss_pred -CeeeecccCHHHHHHHHHHHhhcCceeecC
Confidence 568999999999999999999999987543
No 5
>PF13104 DUF3956: Protein of unknown function (DUF3956)
Probab=94.77 E-value=0.039 Score=35.67 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=25.1
Q ss_pred cccceeeeccCcEEEEeCceeEEEEee
Q psy9775 44 SGCLVNLTEWPPFVISLEDVELVHFER 70 (133)
Q Consensus 44 ~~CLV~LtE~PffVvtL~eVEiV~fER 70 (133)
.+|.++.+-+|++|+++.-|||+.+|=
T Consensus 2 ~sc~~fvngqp~lv~svagieiarlei 28 (45)
T PF13104_consen 2 ESCVVFVNGQPFLVVSVAGIEIARLEI 28 (45)
T ss_pred ceEEEEecCCeeEEEEEeeeEEEEEee
Confidence 479999999999999999999999983
No 6
>COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=93.40 E-value=0.21 Score=45.25 Aligned_cols=77 Identities=22% Similarity=0.437 Sum_probs=65.5
Q ss_pred EEEeeCcccceeeeccCcEEEEeCceeEEEEeeee---ccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCc
Q psy9775 38 VLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQ---FQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSH 114 (133)
Q Consensus 38 v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~---f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI 114 (133)
-.|+|--+|..-|+ -|-+-+.++||-+|.|-|+. -..|+|||.++..-= .-.+.+.|...---.+-++|.|.+|
T Consensus 361 GqLYpLD~~flFlp-Kptl~l~~sdis~V~~SRig~ss~~arTFDlt~~lrs~--~sytF~nisk~Eq~aLeqfl~sK~i 437 (508)
T COG5165 361 GQLYPLDDCFLFLP-KPTLRLDLSDISLVEFSRIGLSSMQARTFDLTLFLRSP--GSYTFNNISKDEQGALEQFLHSKGI 437 (508)
T ss_pred ceEeeccceEEecc-CceEEeecccceEEEEeecccchhhhceeeEEEEEecC--CceeecCcCHHHHHHHHHHHhccCc
Confidence 46889999998887 47889999999999999998 457999999998753 3378888988888889999999999
Q ss_pred eee
Q psy9775 115 GSS 117 (133)
Q Consensus 115 ~y~ 117 (133)
+--
T Consensus 438 k~~ 440 (508)
T COG5165 438 KAR 440 (508)
T ss_pred eec
Confidence 854
No 7
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=80.26 E-value=0.22 Score=30.59 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=39.9
Q ss_pred EEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhcc
Q psy9775 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKP 111 (133)
Q Consensus 67 ~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s 111 (133)
++.+|..-+.+++..++=++|+-.|...=.||.+..+.+++||.+
T Consensus 7 ~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~ 51 (56)
T PF09186_consen 7 QYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTD 51 (56)
T ss_dssp CHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHH
Confidence 445667778889999999999999999999999999999999975
No 8
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=78.36 E-value=1.3 Score=29.42 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.6
Q ss_pred ChHHHHhhhccCCceee
Q psy9775 101 MLDHVKEWLKPHSHGSS 117 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~ 117 (133)
+...+|+|||+.+|+|+
T Consensus 46 ~~~~l~~~lD~~gIt~~ 62 (64)
T PF09494_consen 46 DPSKLKEWLDSQGITFT 62 (64)
T ss_pred CHHHHHHHHHHCCceee
Confidence 46789999999999986
No 9
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=77.94 E-value=1.1 Score=26.88 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=17.6
Q ss_pred ChHHHHhhhccCCceeeecc
Q psy9775 101 MLDHVKEWLKPHSHGSSEST 120 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~E~~ 120 (133)
+-+.+|+||.+.||++.++.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~ 24 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA 24 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC
Confidence 35789999999999999887
No 10
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=67.97 E-value=12 Score=23.76 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=43.5
Q ss_pred EEEEeCceeEEEEee--eeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhh
Q psy9775 56 FVISLEDVELVHFER--VQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWL 109 (133)
Q Consensus 56 fVvtL~eVEiV~fER--V~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL 109 (133)
..++++.|.-|..++ .+-.++--++.+...+.......|..+|.+..+.|++||
T Consensus 25 ~~i~~~~Iq~v~~~q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~i 80 (80)
T PF03703_consen 25 TIIPLDRIQSVSIKQNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIYDWI 80 (80)
T ss_pred EEEEhhHeEEEEEEcCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHHhhC
Confidence 567888888888877 454555578888888887655789999999999999996
No 11
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=53.95 E-value=16 Score=23.65 Aligned_cols=38 Identities=13% Similarity=0.454 Sum_probs=30.0
Q ss_pred cccceeEEEEeec---CCCCceEEeeeeCCC-hHHHHhhhcc
Q psy9775 74 QLKNFDMVFVFKD---YHRKVVMINAIPMNM-LDHVKEWLKP 111 (133)
Q Consensus 74 ~lKnFDmvfIfKD---y~k~v~~I~sIp~~~-Ld~IKeWL~s 111 (133)
...++|++|--.+ +..|+++|+.++.+. ++.|++.+..
T Consensus 43 ~~~~~DlIitT~~l~~~~~pvi~i~~~l~~~d~~~i~~~i~~ 84 (85)
T cd05568 43 DLDDYDLIISTVPLEDTDKPVIVVSPILTEEDIKKIRKFIKK 84 (85)
T ss_pred cccCCCEEEEccccCCCCCCEEEECCCCCHHHHHHHHHHHhc
Confidence 3567898888777 457899999998876 8888887753
No 12
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=50.14 E-value=9.3 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=14.4
Q ss_pred eCCChHHHHhhhccCCceee
Q psy9775 98 PMNMLDHVKEWLKPHSHGSS 117 (133)
Q Consensus 98 p~~~Ld~IKeWL~s~dI~y~ 117 (133)
|-..|+++|+|||.-+..|.
T Consensus 25 s~~~L~k~~~wld~rgWwYe 44 (45)
T PF12123_consen 25 SDAELDKFTAWLDERGWWYE 44 (45)
T ss_dssp -HHHHHHHHHHHHHTT--EE
T ss_pred CHHHHHHHHHHHHhcCcEEe
Confidence 44569999999999988773
No 13
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=47.95 E-value=22 Score=28.18 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.8
Q ss_pred hHHHHHHHHhhcCCceEEee-ccccCC
Q psy9775 3 IATGASMVEHVTKQEIEFDT-PFRELG 28 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdi-P~reLg 28 (133)
++.|++.|+++|++.+++++ |-..||
T Consensus 15 ~~~f~~~v~e~t~G~v~v~~~~~g~Lg 41 (257)
T TIGR00787 15 AEKFAKLVNEKTNGEIKISVFPSSQLG 41 (257)
T ss_pred HHHHHHHHHHHcCCeEEEEEcCCCCCC
Confidence 57899999999999999996 555665
No 14
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=43.93 E-value=10 Score=17.78 Aligned_cols=7 Identities=43% Similarity=1.018 Sum_probs=5.9
Q ss_pred cCCccCc
Q psy9775 26 ELGFPGA 32 (133)
Q Consensus 26 eLgF~GV 32 (133)
.+||+|+
T Consensus 3 smgf~g~ 9 (10)
T PF08262_consen 3 SMGFHGM 9 (10)
T ss_pred ccccccc
Confidence 5899997
No 15
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=42.55 E-value=14 Score=23.63 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=16.1
Q ss_pred ChHHHHhhhccCCceeeec
Q psy9775 101 MLDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~E~ 119 (133)
+=.++|+||++.+|.|.+-
T Consensus 13 ~C~ka~~~L~~~gi~~~~~ 31 (73)
T cd03027 13 DCTAVRLFLREKGLPYVEI 31 (73)
T ss_pred hHHHHHHHHHHCCCceEEE
Confidence 3568899999999999865
No 16
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=40.95 E-value=19 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.4
Q ss_pred HHHHhhhccCCceeeec
Q psy9775 103 DHVKEWLKPHSHGSSES 119 (133)
Q Consensus 103 d~IKeWL~s~dI~y~E~ 119 (133)
...|+||++.+|+|.+-
T Consensus 13 ~~~~~~L~~~~i~y~~~ 29 (60)
T PF00462_consen 13 KKAKEFLDEKGIPYEEV 29 (60)
T ss_dssp HHHHHHHHHTTBEEEEE
T ss_pred HHHHHHHHHcCCeeeEc
Confidence 46899999999999654
No 17
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=39.84 E-value=34 Score=24.70 Aligned_cols=43 Identities=19% Similarity=0.351 Sum_probs=32.8
Q ss_pred ccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCceee
Q psy9775 73 FQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSS 117 (133)
Q Consensus 73 f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~ 117 (133)
++++. .-+.+||++...+...+.= .-..+.|++|+.....+..
T Consensus 37 ~~~~~-p~i~~~k~~~~~~~~y~~~-~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 37 YGIKE-PTIVVYKKFDEKPVVYDGD-KFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp CTCSS-SEEEEEECTTTSEEEESSS-TTSHHHHHHHHHHHSSTSC
T ss_pred hCCCC-CcEEEeccCCCCceecccc-cCCHHHHHHHHHHhccccc
Confidence 67777 8889999987766555543 4489999999998877653
No 18
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=39.13 E-value=14 Score=27.64 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=20.5
Q ss_pred eeeeCCChHHHHhhhccCCceeee
Q psy9775 95 NAIPMNMLDHVKEWLKPHSHGSSE 118 (133)
Q Consensus 95 ~sIp~~~Ld~IKeWL~s~dI~y~E 118 (133)
..|..+.++.+++||+.-+|+|-|
T Consensus 59 ~~i~~~~~~~t~~wL~k~~ipYd~ 82 (126)
T TIGR01689 59 GKINIHTLPIIILWLNQHNVPYDE 82 (126)
T ss_pred cccchhhHHHHHHHHHHcCCCCce
Confidence 347888899999999999999943
No 19
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=38.90 E-value=19 Score=22.69 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=15.9
Q ss_pred hHHHHhhhccCCceeeecc
Q psy9775 102 LDHVKEWLKPHSHGSSEST 120 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E~~ 120 (133)
=..+|+||++.+|.|.+-.
T Consensus 13 C~~ak~~L~~~~i~~~~i~ 31 (75)
T cd03418 13 CVRAKALLDKKGVDYEEID 31 (75)
T ss_pred HHHHHHHHHHCCCcEEEEE
Confidence 4678999999999998743
No 20
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.32 E-value=28 Score=24.05 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=30.6
Q ss_pred eeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCceeeecc
Q psy9775 71 VQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSEST 120 (133)
Q Consensus 71 V~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~~ 120 (133)
+--.++.-|+|+++-|| |.-.....+|+-....||++.-..
T Consensus 42 l~~~i~~aD~VIv~t~~---------vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 42 LPSKIKKADLVIVFTDY---------VSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHhcCCCCEEEEEeCC---------cChHHHHHHHHHHHHcCCcEEEEC
Confidence 34567888999999998 445667788888888887766543
No 21
>TIGR01898 cas_TM1791_cmr6 CRISPR-associated RAMP protein, Cmr6 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.
Probab=34.68 E-value=51 Score=25.53 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=25.5
Q ss_pred EEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhc
Q psy9775 66 VHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLK 110 (133)
Q Consensus 66 V~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~ 110 (133)
+.||||.-| ..|++.++++++.. .++.+++||.
T Consensus 124 v~f~~V~~G-~~F~f~i~~~~~~~-----------~~~~~~~~l~ 156 (176)
T TIGR01898 124 IKFLTVKKG-VTFQFVLEFDNLGE-----------LLDKLQKLLK 156 (176)
T ss_pred eEEEEECCC-CEEEEEEEeCChhH-----------HHHHHHHHHH
Confidence 589999865 57999999998631 4567888886
No 22
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=32.67 E-value=26 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=15.2
Q ss_pred hHHHHhhhccCCceeeec
Q psy9775 102 LDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E~ 119 (133)
=...|+||++.||.|.+-
T Consensus 12 C~~ak~~L~~~~i~~~~~ 29 (72)
T TIGR02194 12 CKMTKKALEEHGIAFEEI 29 (72)
T ss_pred HHHHHHHHHHCCCceEEE
Confidence 357899999999999774
No 23
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=31.70 E-value=26 Score=22.30 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=15.7
Q ss_pred hHHHHhhhccCCceeeecc
Q psy9775 102 LDHVKEWLKPHSHGSSEST 120 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E~~ 120 (133)
=...|+||++.+|.|.+-.
T Consensus 14 C~~ak~~L~~~~i~~~~~~ 32 (72)
T cd03029 14 CARAKAALQENGISYEEIP 32 (72)
T ss_pred HHHHHHHHHHcCCCcEEEE
Confidence 4578999999999997654
No 24
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=30.20 E-value=53 Score=26.32 Aligned_cols=102 Identities=13% Similarity=0.162 Sum_probs=53.8
Q ss_pred hHHHHHHHHhhcCCceEEee-ccccCCccCccccc-------eEEEee----CcccceeeeccCcEEEEeCceeEEEEee
Q psy9775 3 IATGASMVEHVTKQEIEFDT-PFRELGFPGAPYRS-------TVLLQP----TSGCLVNLTEWPPFVISLEDVELVHFER 70 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdi-P~reLgF~GVP~rs-------~v~i~P----T~~CLV~LtE~PffVvtL~eVEiV~fER 70 (133)
.+.|++.|++.|++.+++++ |-..||=.+--.+. +....| ...=..++.+-||+.-+.++++- ..+.
T Consensus 15 ~~~fa~~v~e~t~G~v~i~v~~~g~lg~~~e~~~~v~~G~vdm~~~~~~~~~~~~p~~~~~~lP~~~~~~~~~~~-~~~~ 93 (286)
T PF03480_consen 15 VEKFAEEVEERTGGRVKIEVFPAGQLGKEAEVLEAVQDGAVDMAVVSPSYLAGFVPEFGVFDLPFLFRDYEELDR-VMDS 93 (286)
T ss_dssp HHHHHHHHHHHTTTSEEEEEEETTSSSSHHHHHHHHHTTSSSEEEEEGGGGTTTSGGGGGGGSTTTSSSHHHHHH-HHHS
T ss_pred HHHHHHHHHHHcCCeEEEEEecCcccCCHHHHHHHHhCCCccEEeecchhhhhhchhheeeeCCCCCCCHHHHHH-HHhC
Confidence 47899999999999999885 55667643322221 222222 22335667888988866666554 2222
Q ss_pred -----eeccccceeEEEEeecCCCCceEEee--eeCCChHHHH
Q psy9775 71 -----VQFQLKNFDMVFVFKDYHRKVVMINA--IPMNMLDHVK 106 (133)
Q Consensus 71 -----V~f~lKnFDmvfIfKDy~k~v~~I~s--Ip~~~Ld~IK 106 (133)
+.-.+..=.+.++.= +...+..+-+ =|+.+++++|
T Consensus 94 ~~~~~l~~~~~~~g~~~L~~-~~~g~~~~~~~~~pi~s~~Dlk 135 (286)
T PF03480_consen 94 GYGPELREELEEKGIKLLGW-FPGGPRQFFSTKKPIRSPEDLK 135 (286)
T ss_dssp HHHHHHHHHHHHTTEEEEEE-EEEEEEEEEESSS--SSGGGGT
T ss_pred cHHHHHHHHHHhhceEEEEE-ecCCceEEEecccCCccHhhHh
Confidence 111111114444422 3333444444 4777777655
No 25
>PF06967 Mo-nitro_C: Mo-dependent nitrogenase C-terminus; InterPro: IPR009717 This entry represents the C terminus (approximately 80 residues) of a number of bacterial Mo-dependent nitrogenases. These are involved in nitrogen fixation in cyanobacteria [].
Probab=28.80 E-value=28 Score=25.35 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.7
Q ss_pred ChHHHHhhhccCCce
Q psy9775 101 MLDHVKEWLKPHSHG 115 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~ 115 (133)
-|..+++|||+.+|.
T Consensus 2 ~L~plr~wld~~ei~ 16 (84)
T PF06967_consen 2 LLQPLRQWLDSIEIH 16 (84)
T ss_pred hhHHHHHHHhhcccC
Confidence 367899999999884
No 26
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=28.19 E-value=91 Score=20.67 Aligned_cols=37 Identities=16% Similarity=0.078 Sum_probs=27.1
Q ss_pred ccceeEEEEeecC----CCCceEEeeeeCCC-hHHHHhhhcc
Q psy9775 75 LKNFDMVFVFKDY----HRKVVMINAIPMNM-LDHVKEWLKP 111 (133)
Q Consensus 75 lKnFDmvfIfKDy----~k~v~~I~sIp~~~-Ld~IKeWL~s 111 (133)
..++|+++.-.+. ..|++.++..+.+. +++|++++.+
T Consensus 46 ~~~~Dliist~~~~~~~~~p~i~v~~~l~~~d~~~i~~~I~~ 87 (89)
T cd05566 46 LDDADLIVSTTKVPEDYGIPVINGLPFLTGIGEDKVYEEILE 87 (89)
T ss_pred cCCCcEEEEcCCcCCCCCCCEEEEeeccccCChHHHHHHHHH
Confidence 4689999887755 45777887776654 8888887754
No 27
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=27.48 E-value=56 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.4
Q ss_pred hHHHHHHHHhhcCCceEEeeccccCCccCc
Q psy9775 3 IATGASMVEHVTKQEIEFDTPFRELGFPGA 32 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdiP~reLgF~GV 32 (133)
+.++++.+++..-+-+|+++||++-=-.|-
T Consensus 16 ~~~~~~~l~~~Gad~iel~iPfsdPv~DG~ 45 (242)
T cd04724 16 TLEILKALVEAGADIIELGIPFSDPVADGP 45 (242)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCH
Confidence 567777787765557999999998877774
No 28
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=27.08 E-value=46 Score=21.09 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.3
Q ss_pred HHHHhhhccCCceeeecccc
Q psy9775 103 DHVKEWLKPHSHGSSESTDM 122 (133)
Q Consensus 103 d~IKeWL~s~dI~y~E~~~~ 122 (133)
..-.+||++.||+|...+.-
T Consensus 18 ~~Q~~~L~~~Gi~~~~~~~G 37 (47)
T PF13986_consen 18 SKQIRWLRRNGIPFVVRADG 37 (47)
T ss_pred HHHHHHHHHCCCeeEECCCC
Confidence 34579999999999987754
No 29
>PRK11568 hypothetical protein; Provisional
Probab=26.85 E-value=13 Score=30.18 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=40.3
Q ss_pred EEEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccC
Q psy9775 65 LVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112 (133)
Q Consensus 65 iV~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~ 112 (133)
.-.+.+|..-++.++..++-++|+..|.-.-.+|.+.++.+++||.++
T Consensus 145 y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~~~v~~~~~~~~~~~l~~~ 192 (204)
T PRK11568 145 YAQLAGIEALLGQFDGKIVNSEYQAFVTLRVALPAAKVAEFSAKLADF 192 (204)
T ss_pred cchHHHHHHHHHHCCCEEEcceecCCEEEEEEECHHHHHHHHHHHHHH
Confidence 334456666788899999999999999888899999999999999753
No 30
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=26.51 E-value=7.1 Score=30.29 Aligned_cols=38 Identities=29% Similarity=0.470 Sum_probs=29.0
Q ss_pred ccCccccceEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeec
Q psy9775 29 FPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQF 73 (133)
Q Consensus 29 F~GVP~rs~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f 73 (133)
|.|+-||+++++.|..=|.++.. ++++.-..+||||--
T Consensus 28 ~a~~sh~~SlL~lpdgv~~W~v~-------~~~~Lt~e~f~~vl~ 65 (127)
T COG3737 28 FADMSHRGSLLVLPDGVCDWEVA-------TLSDLTPEDFERVLA 65 (127)
T ss_pred eccccccccEEEecCcccccccc-------ChhhCCHHHHHHHHh
Confidence 78899999999999999988766 455555556666543
No 31
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=26.39 E-value=36 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.090 Sum_probs=16.2
Q ss_pred ChHHHHhhhccCCceeeec
Q psy9775 101 MLDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~E~ 119 (133)
+=..+|+||++.||.|.+-
T Consensus 20 ~C~~ak~~L~~~gi~y~~i 38 (79)
T TIGR02190 20 FCAKAKATLKEKGYDFEEI 38 (79)
T ss_pred hHHHHHHHHHHcCCCcEEE
Confidence 3568899999999999874
No 32
>KOG0481|consensus
Probab=26.38 E-value=36 Score=32.69 Aligned_cols=16 Identities=50% Similarity=0.953 Sum_probs=13.8
Q ss_pred ccceeEEEEeecCCCC
Q psy9775 75 LKNFDMVFVFKDYHRK 90 (133)
Q Consensus 75 lKnFDmvfIfKDy~k~ 90 (133)
|.-|||+||-||-+..
T Consensus 502 LSRFDmIFIVKD~h~~ 517 (729)
T KOG0481|consen 502 LSRFDMIFIVKDEHDE 517 (729)
T ss_pred hhhccEEEEEeccCcc
Confidence 6789999999998665
No 33
>PRK14014 putative acyltransferase; Provisional
Probab=26.28 E-value=75 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=17.0
Q ss_pred CCCCceEEeeeeCCCh------------HHHHhhhcc
Q psy9775 87 YHRKVVMINAIPMNML------------DHVKEWLKP 111 (133)
Q Consensus 87 y~k~v~~I~sIp~~~L------------d~IKeWL~s 111 (133)
..+-.++|..+|++.. +..++||++
T Consensus 245 ~~~v~v~i~~~pi~~~~~~~y~~d~~~~~~~~~Wl~~ 281 (301)
T PRK14014 245 VKKIVVHVRLLPIPEELIGDYFNDKEFRRRFQQWLNQ 281 (301)
T ss_pred ccEEEEEEEEEEcccccccccccChHHHHHHHHHHHH
Confidence 3344466677776654 789999986
No 34
>PLN03107 eukaryotic translation initiation factor 5A; Provisional
Probab=25.86 E-value=1.1e+02 Score=24.07 Aligned_cols=53 Identities=9% Similarity=0.204 Sum_probs=36.0
Q ss_pred eCceeEEEEeeeecccccee--E--EEEeec-CCCCceEEeeeeCCChHHHHhhhccC
Q psy9775 60 LEDVELVHFERVQFQLKNFD--M--VFVFKD-YHRKVVMINAIPMNMLDHVKEWLKPH 112 (133)
Q Consensus 60 L~eVEiV~fERV~f~lKnFD--m--vfIfKD-y~k~v~~I~sIp~~~Ld~IKeWL~s~ 112 (133)
-+.||.+.+||..+.+-..| . +|.-.+ ++..-..|+.+.-+..+.|++|.++-
T Consensus 77 ~~~ve~~~ve~~~~qyly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~~g 134 (159)
T PLN03107 77 SHNCDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFDEG 134 (159)
T ss_pred CCEEEEEEEEEEEEEEEEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHhCC
Confidence 36799999999987776664 2 333332 35444555555557799999999753
No 35
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=24.85 E-value=52 Score=21.21 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.5
Q ss_pred eeeCCChHHHHhhhccCCceeee
Q psy9775 96 AIPMNMLDHVKEWLKPHSHGSSE 118 (133)
Q Consensus 96 sIp~~~Ld~IKeWL~s~dI~y~E 118 (133)
.||-++++.+++.|+..||.|.-
T Consensus 39 ~V~p~~~~~f~~~L~~~~i~~~v 61 (74)
T PF02244_consen 39 MVPPEKLEEFEELLKEHGIEYEV 61 (74)
T ss_dssp EEEGGGHHHHHHHHHHTT-EEEE
T ss_pred EECHHHHHHHHHHHHHCCCcEEE
Confidence 47889999999999999999863
No 36
>TIGR00257 IMPACT_YIGZ uncharacterized protein, YigZ family. This uncharacterized protein family includes YigZ, which has been crystallized, from E. coli. YigZ is homologous to the protein product of the mouse IMPACT gene. Crystallography shows a two-domain stucture, and the C-terminal domain is suggested to bind nucleic acids. The function is unknown. Note that the ortholog from E. coli was shown fused to the pepQ gene in GenBank entry X54687. This caused occasional misidentification of this protein as pepQ; this family is found in a number of species that lack pepQ.
Probab=24.63 E-value=23 Score=28.71 Aligned_cols=48 Identities=15% Similarity=0.236 Sum_probs=41.4
Q ss_pred EEEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccC
Q psy9775 65 LVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112 (133)
Q Consensus 65 iV~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~ 112 (133)
.-.+.+|..-++.++..++-++|+..|.-.-.+|.+..+.+++||.++
T Consensus 145 y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~~~v~~~~~~~~~~~l~~~ 192 (204)
T TIGR00257 145 YKQLDALERELKKFQLEIIKSNFSNNVVLVEISGTKENLAFSEQLTEI 192 (204)
T ss_pred hhHHHHHHHHHHHCCCEEEeeEecCCEEEEEEECHHHHHHHHHHHHHH
Confidence 344567777889999999999999999999999999999999999753
No 37
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=23.32 E-value=42 Score=23.56 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=12.9
Q ss_pred eeCCChHHHHhhhccCC
Q psy9775 97 IPMNMLDHVKEWLKPHS 113 (133)
Q Consensus 97 Ip~~~Ld~IKeWL~s~d 113 (133)
|-=.+.+.||+||.+.|
T Consensus 70 IkG~~~~~Vk~wL~~~G 86 (87)
T PF05046_consen 70 IKGDHVEEVKKWLLEKG 86 (87)
T ss_pred EcCccHHHHHHHHHHCc
Confidence 44457888999998875
No 38
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.18 E-value=19 Score=21.98 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=13.7
Q ss_pred hHHHHhhhccCCceeeeccccc
Q psy9775 102 LDHVKEWLKPHSHGSSESTDMS 123 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E~~~~~ 123 (133)
...+|.||++.||.|-.+..-+
T Consensus 6 V~~Lk~iL~~~~I~~ps~AkKa 27 (35)
T PF12949_consen 6 VAQLKRILDEHGIEFPSNAKKA 27 (35)
T ss_dssp SHHHHHHHHHHT---SSS--SH
T ss_pred HHHHHHHHHHcCCCCCCCCCHH
Confidence 4679999999999998766543
No 39
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=23.15 E-value=51 Score=19.54 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=16.9
Q ss_pred ChHHHHhhhccCCceeeeccc
Q psy9775 101 MLDHVKEWLKPHSHGSSESTD 121 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~E~~~ 121 (133)
+=..++.||++.+|.|.+-..
T Consensus 12 ~C~~~~~~L~~~~i~~~~~di 32 (72)
T cd02066 12 YCKRAKRLLESLGIEFEEIDI 32 (72)
T ss_pred HHHHHHHHHHHcCCcEEEEEC
Confidence 457889999999999976543
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=22.90 E-value=1e+02 Score=20.55 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=25.2
Q ss_pred ccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhc
Q psy9775 73 FQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLK 110 (133)
Q Consensus 73 f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~ 110 (133)
++++..=.+++|+| .+.+.++..+.. .+.+++||+
T Consensus 63 ~~v~~vPt~~i~~~-g~~v~~~~g~~~--~~~~~~~l~ 97 (97)
T cd02949 63 AGIMGTPTVQFFKD-KELVKEISGVKM--KSEYREFIE 97 (97)
T ss_pred CCCeeccEEEEEEC-CeEEEEEeCCcc--HHHHHHhhC
Confidence 56677777899987 677777766543 477888874
No 41
>PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A ....
Probab=22.31 E-value=91 Score=24.22 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred cccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCceeeeccccc
Q psy9775 74 QLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMS 123 (133)
Q Consensus 74 ~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~E~~~~~ 123 (133)
|.+.-|++++.++- .++..|.+||...||+|.-....+
T Consensus 74 ~~~~~diAVL~R~~------------~~~~~i~~~L~~~gIp~~~~~~~~ 111 (351)
T PF13361_consen 74 GIPPSDIAVLVRTN------------SQIKEIEDALKEAGIPYRISGSKS 111 (351)
T ss_dssp TS-GGGEEEEESSG------------GHHHHHHHHHHHTTS-EEESSSSB
T ss_pred CCCcccEEEEEECc------------hhHHHHHHHHhhhcceeEeccccc
Confidence 77788999999883 357889999999999987666544
No 42
>PRK10638 glutaredoxin 3; Provisional
Probab=21.83 E-value=49 Score=21.78 Aligned_cols=19 Identities=16% Similarity=0.134 Sum_probs=16.2
Q ss_pred ChHHHHhhhccCCceeeec
Q psy9775 101 MLDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~E~ 119 (133)
+-..+|+||++.+|.|.+-
T Consensus 14 ~C~~a~~~L~~~gi~y~~~ 32 (83)
T PRK10638 14 FCHRAKALLNSKGVSFQEI 32 (83)
T ss_pred hHHHHHHHHHHcCCCcEEE
Confidence 4578999999999999764
No 43
>PRK10329 glutaredoxin-like protein; Provisional
Probab=21.28 E-value=55 Score=22.10 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=15.1
Q ss_pred HHHHhhhccCCceeeecc
Q psy9775 103 DHVKEWLKPHSHGSSEST 120 (133)
Q Consensus 103 d~IKeWL~s~dI~y~E~~ 120 (133)
+.+|++|++.||.|.+-.
T Consensus 15 ~~ak~~L~~~gI~~~~id 32 (81)
T PRK10329 15 HATKRAMESRGFDFEMIN 32 (81)
T ss_pred HHHHHHHHHCCCceEEEE
Confidence 568999999999997643
No 44
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=21.02 E-value=38 Score=23.62 Aligned_cols=8 Identities=50% Similarity=1.061 Sum_probs=6.5
Q ss_pred HHHhhhcc
Q psy9775 104 HVKEWLKP 111 (133)
Q Consensus 104 ~IKeWL~s 111 (133)
.+|+|||.
T Consensus 46 mLkeWLD~ 53 (73)
T PF10691_consen 46 MLKEWLDE 53 (73)
T ss_pred HHHHHHHh
Confidence 47999986
No 45
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.84 E-value=55 Score=23.24 Aligned_cols=18 Identities=22% Similarity=0.442 Sum_probs=14.9
Q ss_pred hHHHHhhhccCCceeeec
Q psy9775 102 LDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E~ 119 (133)
-.+.++||++.||.|.+=
T Consensus 12 c~ka~~~L~~~~i~~~~i 29 (111)
T cd03036 12 CRKAKKWLDEHGVDYTAI 29 (111)
T ss_pred HHHHHHHHHHcCCceEEe
Confidence 456799999999998773
Done!