Query psy9775
Match_columns 133
No_of_seqs 105 out of 150
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:18:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gcl_A Hypothetical 63.0 kDa p 97.6 0.00023 7.7E-09 58.3 8.1 78 37-116 175-255 (261)
2 3fss_A Histone chaperone RTT10 96.4 0.012 4.2E-07 48.0 8.1 71 37-111 166-236 (237)
3 3lh2_S 4E10_1VI7A_S0_002_N (T8 58.5 0.93 3.2E-05 29.2 -1.7 44 69-112 20-63 (76)
4 2l48_A N-acetylmuramoyl-L-alan 45.7 7 0.00024 27.4 1.1 20 98-118 64-83 (85)
5 3rco_A Tudor domain-containing 34.8 12 0.00041 26.1 0.8 11 21-31 45-55 (89)
6 2lqo_A Putative glutaredoxin R 34.6 13 0.00045 24.8 1.0 19 101-119 16-34 (92)
7 3fxb_A Trap dicarboxylate tran 30.6 34 0.0012 27.1 3.0 25 3-28 33-57 (326)
8 2pfy_A Putative exported prote 28.3 48 0.0017 25.5 3.4 26 3-28 20-46 (301)
9 2gjf_A Designed protein; proca 27.9 23 0.00079 22.4 1.3 22 96-117 52-73 (78)
10 1aba_A Glutaredoxin; electron 27.1 24 0.00081 22.1 1.2 18 102-119 17-34 (87)
11 2dun_A POL MU, DNA polymerase 26.5 46 0.0016 24.7 2.9 26 83-109 42-67 (133)
12 3u65_B TP33 protein; tetratric 25.8 43 0.0015 26.7 2.8 26 3-28 28-54 (328)
13 1vjq_A Designed protein; struc 24.9 29 0.001 21.9 1.4 27 91-118 40-66 (79)
14 4g2e_A Peroxiredoxin; redox pr 24.8 33 0.0011 23.7 1.7 57 37-117 34-90 (157)
15 2pfz_A Putative exported prote 24.8 54 0.0019 25.2 3.1 26 3-28 19-45 (301)
16 4gqc_A Thiol peroxidase, perox 24.8 33 0.0011 24.1 1.7 56 38-117 38-93 (164)
17 1t1v_A SH3BGRL3, SH3 domain-bi 23.4 27 0.00093 22.2 1.0 17 103-119 22-38 (93)
18 3s93_A Tudor domain-containing 22.9 23 0.00077 24.8 0.5 11 21-31 43-53 (102)
19 1u6t_A SH3 domain-binding glut 22.7 49 0.0017 23.6 2.3 17 103-119 20-36 (121)
20 2ct6_A SH3 domain-binding glut 22.4 32 0.0011 23.0 1.2 16 104-119 29-44 (111)
21 3na2_A Uncharacterized protein 22.0 1.1E+02 0.0037 23.2 4.2 37 56-92 81-117 (172)
22 3raz_A Thioredoxin-related pro 21.5 57 0.002 21.5 2.4 31 87-117 53-83 (151)
23 1vi7_A Hypothetical protein YI 20.6 25 0.00087 27.8 0.5 43 69-111 152-194 (217)
24 3ipz_A Monothiol glutaredoxin- 20.2 34 0.0012 22.7 1.0 17 102-118 36-52 (109)
No 1
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A
Probab=97.58 E-value=0.00023 Score=58.27 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=66.6
Q ss_pred eEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeec---cccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCC
Q psy9775 37 TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQF---QLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHS 113 (133)
Q Consensus 37 ~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f---~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~d 113 (133)
.-.|.|...|++=+. -|+..+..+||+-|.|.||+- +.++|||++..|+ .......++|+.+..+.|-++|.+.+
T Consensus 175 eG~LypL~~gflF~~-KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~-g~~~~~Fs~IdreE~~~L~~ylk~k~ 252 (261)
T 2gcl_A 175 EGYLYPLDNAFFFLT-KPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSKN 252 (261)
T ss_dssp EEEEEECSSEEEEES-SSCEEEEGGGEEEEEEEC--------CEEEEEEEEST-TCCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred ceEEEEecCceEEee-CCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcC-CCccEEEcccCHHHHHHHHHHHHHcC
Confidence 478999999999985 599999999999999999943 5799999999997 33678999999999999999999998
Q ss_pred cee
Q psy9775 114 HGS 116 (133)
Q Consensus 114 I~y 116 (133)
|+-
T Consensus 253 l~i 255 (261)
T 2gcl_A 253 LRV 255 (261)
T ss_dssp CCE
T ss_pred Cee
Confidence 864
No 2
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=96.41 E-value=0.012 Score=48.00 Aligned_cols=71 Identities=14% Similarity=0.208 Sum_probs=63.6
Q ss_pred eEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhcc
Q psy9775 37 TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKP 111 (133)
Q Consensus 37 ~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s 111 (133)
--.|.|..+|+.-..--|...+.++||+-|.+-|| +-++||+++..|+ -.-..-++|..+..+.|-+|+.+
T Consensus 166 eG~LyfL~~~ilFgf~KP~l~i~~~dI~svs~Srv--~~RTFdl~v~~k~--g~e~eFsmIDq~E~~~Id~fvk~ 236 (237)
T 3fss_A 166 EGTLYFLPDHIIFGFKKPILLLDASDIESITYSSI--TRLTFNASLVTKD--GEKYEFSMIDQTEYAKIDDYVKR 236 (237)
T ss_dssp EEEEEECSSEEEEESSSSCEEEEGGGEEEEEEESC--CSSEEEEEEEETT--SCEEEEEEEEGGGHHHHHHHHHC
T ss_pred CeEEEEecCceEEecCCCeEEEEehhEEEEEEEec--cCcEEEEEEEECC--CCeEEEeecCHHHHHHHHHHHhc
Confidence 45788999999998888999999999999999999 5899999999996 34689999999999999999864
No 3
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=58.54 E-value=0.93 Score=29.23 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=36.2
Q ss_pred eeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccC
Q psy9775 69 ERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112 (133)
Q Consensus 69 ERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~ 112 (133)
-+|..-+++++..++-.+|+..|.-.-.||.+..+.+++||.+.
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~ 63 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADF 63 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHH
Confidence 45666788899999999999998888899999999999999753
No 4
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=45.73 E-value=7 Score=27.38 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=15.9
Q ss_pred eCCChHHHHhhhccCCceeee
Q psy9775 98 PMNMLDHVKEWLKPHSHGSSE 118 (133)
Q Consensus 98 p~~~Ld~IKeWL~s~dI~y~E 118 (133)
|-..||++|+|||.-+ -|||
T Consensus 64 s~~eLdk~t~wLD~rg-WwYe 83 (85)
T 2l48_A 64 SDAQLKAMKEYLDRKG-WWYE 83 (85)
T ss_dssp CHHHHHHHHHHHHHTT-CCEE
T ss_pred CHHHHHHHHHHHhccC-ceEE
Confidence 3456999999999988 5565
No 5
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=34.84 E-value=12 Score=26.07 Aligned_cols=11 Identities=55% Similarity=1.129 Sum_probs=9.6
Q ss_pred eeccccCCccC
Q psy9775 21 DTPFRELGFPG 31 (133)
Q Consensus 21 diP~reLgF~G 31 (133)
.+|||+|||.-
T Consensus 45 ~iP~r~lGy~s 55 (89)
T 3rco_A 45 WIPFKQLGFPT 55 (89)
T ss_dssp CCCTTTTTCSS
T ss_pred cCChhhhCccc
Confidence 68999999974
No 6
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=34.56 E-value=13 Score=24.79 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=16.3
Q ss_pred ChHHHHhhhccCCceeeec
Q psy9775 101 MLDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 101 ~Ld~IKeWL~s~dI~y~E~ 119 (133)
+=...|+||++.+|.|.|=
T Consensus 16 ~C~~aK~~L~~~gi~y~~i 34 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEV 34 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEE
T ss_pred hHHHHHHHHHhcCCceEEE
Confidence 4578899999999999873
No 7
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=30.63 E-value=34 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhcCCceEEeeccccCC
Q psy9775 3 IATGASMVEHVTKQEIEFDTPFRELG 28 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdiP~reLg 28 (133)
.+.|++.|++.|++.++ --|-.+||
T Consensus 33 ~~~fa~~Vee~s~G~i~-v~p~g~Lg 57 (326)
T 3fxb_A 33 AQKFKEEIEANSDHEIQ-LFPYGTLG 57 (326)
T ss_dssp HHHHHHHHHHSSSCCCE-EECTTSSC
T ss_pred HHHHHHHHHHHcCCeEE-EeeCCCCC
Confidence 46899999999999999 77777886
No 8
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=28.26 E-value=48 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.051 Sum_probs=21.0
Q ss_pred hHHHHHHHHhhcCCceEEee-ccccCC
Q psy9775 3 IATGASMVEHVTKQEIEFDT-PFRELG 28 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdi-P~reLg 28 (133)
.+.|++.|++.+++.+++++ |-.+||
T Consensus 20 ~~~fa~~v~e~s~G~i~i~~~~~g~Lg 46 (301)
T 2pfy_A 20 ARQFADEVKAATAGALEIKVQSNSTLL 46 (301)
T ss_dssp HHHHHHHHHHHTTTSEEEEEECTTSSS
T ss_pred HHHHHHHHHHHcCCeEEEEEccchhhC
Confidence 46799999999999999985 655664
No 9
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=27.88 E-value=23 Score=22.40 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.7
Q ss_pred eeeCCChHHHHhhhccCCceee
Q psy9775 96 AIPMNMLDHVKEWLKPHSHGSS 117 (133)
Q Consensus 96 sIp~~~Ld~IKeWL~s~dI~y~ 117 (133)
.||-+.++.+++.|.+.+|.|.
T Consensus 52 ~V~p~~~~~f~~~L~~~~I~y~ 73 (78)
T 2gjf_A 52 LIPSDMVEWFLEMLKAKGIPFT 73 (78)
T ss_dssp EECTTSHHHHHHHHHHHTCCEE
T ss_pred EECHHHHHHHHHHHHHCCCcEE
Confidence 8999999999999999999985
No 10
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=27.05 E-value=24 Score=22.06 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=15.1
Q ss_pred hHHHHhhhccCCceeeec
Q psy9775 102 LDHVKEWLKPHSHGSSES 119 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E~ 119 (133)
=...|+||++.+|.|.+=
T Consensus 17 C~~ak~~L~~~gi~y~~i 34 (87)
T 1aba_A 17 CDNAKRLLTVKKQPFEFI 34 (87)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 467899999999998653
No 11
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=26.53 E-value=46 Score=24.68 Aligned_cols=26 Identities=8% Similarity=0.189 Sum_probs=23.9
Q ss_pred EeecCCCCceEEeeeeCCChHHHHhhh
Q psy9775 83 VFKDYHRKVVMINAIPMNMLDHVKEWL 109 (133)
Q Consensus 83 IfKDy~k~v~~I~sIp~~~Ld~IKeWL 109 (133)
|.-+|+..|+||-+ -.++-+.+++||
T Consensus 42 v~~~~S~~VTHVV~-E~~s~~~~~~~L 67 (133)
T 2dun_A 42 VLDACSSEATHVVM-EETSAEEAVSWQ 67 (133)
T ss_dssp ECSSCCTTCCEEEE-SSCCHHHHHHHH
T ss_pred eccccCCCceEEEe-cCCCHHHHHHHH
Confidence 67799999999999 888899999999
No 12
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=25.85 E-value=43 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhcCCceEEee-ccccCC
Q psy9775 3 IATGASMVEHVTKQEIEFDT-PFRELG 28 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdi-P~reLg 28 (133)
.+.|++.|++.|++.+++++ |-.+||
T Consensus 28 ~~~fa~~v~e~s~G~i~i~v~p~g~Lg 54 (328)
T 3u65_B 28 LKKLSAEWSEITGGLVSMKFYDMSSLG 54 (328)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEEHHHHT
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCcC
Confidence 46899999999999999885 555554
No 13
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=24.87 E-value=29 Score=21.87 Aligned_cols=27 Identities=30% Similarity=0.353 Sum_probs=22.8
Q ss_pred ceEEeeeeCCChHHHHhhhccCCceeee
Q psy9775 91 VVMINAIPMNMLDHVKEWLKPHSHGSSE 118 (133)
Q Consensus 91 v~~I~sIp~~~Ld~IKeWL~s~dI~y~E 118 (133)
+++| .||-..++.+++.|.+.+|.|.-
T Consensus 40 ~~di-~V~p~~~~~f~~~L~~~~i~~~v 66 (79)
T 1vjq_A 40 PVVI-LIPSDMVEWFLEMLKAKGIPFTV 66 (79)
T ss_dssp CEEE-EECGGGHHHHHHHHHHTTCCEEE
T ss_pred cEEE-EECHHHHHHHHHHHHHCCCcEEE
Confidence 3444 69999999999999999999863
No 14
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=24.82 E-value=33 Score=23.68 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=32.2
Q ss_pred eEEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCcee
Q psy9775 37 TVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGS 116 (133)
Q Consensus 37 ~v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y 116 (133)
.+.+.|.+.|=.+..|.|-+ ++. +++|...-..+-+|..++.+.+++|++..++.|
T Consensus 34 vl~f~~~~~c~~C~~e~~~l------------~~~------------~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~ 89 (157)
T 4g2e_A 34 VLAFYPAAFTQVCTKEMCTF------------RDS------------MAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNF 89 (157)
T ss_dssp EEEECSCTTCCC------CC------------SCG------------GGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCS
T ss_pred EEEecCCCCCCccccchhhc------------ccc------------cccccccCceEeeecccchhHHHHHHHHcCCcE
Confidence 44556888898777766643 222 223333334444555677889999999998877
Q ss_pred e
Q psy9775 117 S 117 (133)
Q Consensus 117 ~ 117 (133)
.
T Consensus 90 p 90 (157)
T 4g2e_A 90 T 90 (157)
T ss_dssp E
T ss_pred E
Confidence 4
No 15
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=24.81 E-value=54 Score=25.24 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=20.9
Q ss_pred hHHHHHHHHhhcCCceEEee-ccccCC
Q psy9775 3 IATGASMVEHVTKQEIEFDT-PFRELG 28 (133)
Q Consensus 3 Fk~F~~kve~~~~~~~efdi-P~reLg 28 (133)
.+.|++.|++.+++.+++++ |-.+||
T Consensus 19 ~~~fa~~v~~~s~G~i~i~~~~~g~Lg 45 (301)
T 2pfz_A 19 LTQFVKDVDSLSGGKLKITLHNNASLY 45 (301)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECTTSSS
T ss_pred HHHHHHHHHHHcCCeEEEEEccCcccC
Confidence 46799999999999899884 655664
No 16
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=24.79 E-value=33 Score=24.06 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=36.1
Q ss_pred EEEeeCcccceeeeccCcEEEEeCceeEEEEeeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhccCCceee
Q psy9775 38 VLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSS 117 (133)
Q Consensus 38 v~i~PT~~CLV~LtE~PffVvtL~eVEiV~fERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~ 117 (133)
+.+.|.+.|=.+..|.|-| .+.. ++|.+.-..+-+|..++.+.+++|.+..++.|.
T Consensus 38 l~f~~~~~cp~C~~e~~~l------------~~~~------------~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp 93 (164)
T 4gqc_A 38 LIFFPAAFSPVCTKELCTF------------RDKM------------AQLEKANAEVLAISVDSPWCLKKFKDENRLAFN 93 (164)
T ss_dssp EEECSCTTCCEECSSCEES------------CCCG------------GGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSE
T ss_pred EEEeCCCCCCCcccchhhh------------hhhH------------HHhhccCceEEEecCCCHHHHHHHHHhcCcccc
Confidence 4457888898777765533 2222 233333344455566788999999999998874
No 17
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=23.45 E-value=27 Score=22.18 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=14.8
Q ss_pred HHHHhhhccCCceeeec
Q psy9775 103 DHVKEWLKPHSHGSSES 119 (133)
Q Consensus 103 d~IKeWL~s~dI~y~E~ 119 (133)
...|+||++.+|.|.+=
T Consensus 22 ~~ak~~L~~~~i~~~~~ 38 (93)
T 1t1v_A 22 SEVTRILDGKRIQYQLV 38 (93)
T ss_dssp HHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 68999999999998763
No 18
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=22.87 E-value=23 Score=24.83 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=9.5
Q ss_pred eeccccCCccC
Q psy9775 21 DTPFRELGFPG 31 (133)
Q Consensus 21 diP~reLgF~G 31 (133)
.+|||.|||.-
T Consensus 43 ~iP~r~lGy~s 53 (102)
T 3s93_A 43 HLPLRILGYRS 53 (102)
T ss_dssp CCCTGGGTCSS
T ss_pred cCCchhcCcCC
Confidence 68999999964
No 19
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=22.68 E-value=49 Score=23.61 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=15.3
Q ss_pred HHHHhhhccCCceeeec
Q psy9775 103 DHVKEWLKPHSHGSSES 119 (133)
Q Consensus 103 d~IKeWL~s~dI~y~E~ 119 (133)
..+|.+|++.+|.|.|=
T Consensus 20 ~~aK~lL~~kgV~feEi 36 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEK 36 (121)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 58999999999999883
No 20
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.37 E-value=32 Score=22.99 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=14.1
Q ss_pred HHHhhhccCCceeeec
Q psy9775 104 HVKEWLKPHSHGSSES 119 (133)
Q Consensus 104 ~IKeWL~s~dI~y~E~ 119 (133)
.+|+||++.+|.|.+=
T Consensus 29 ~ak~~L~~~gi~y~~v 44 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEV 44 (111)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 6999999999999764
No 21
>3na2_A Uncharacterized protein; beta-fold, metagenome, structural genomics, PSI-2, protein S initiative, midwest center for structural genomics; 2.29A {Leptospirillum rubarum}
Probab=21.99 E-value=1.1e+02 Score=23.23 Aligned_cols=37 Identities=32% Similarity=0.393 Sum_probs=27.7
Q ss_pred EEEEeCceeEEEEeeeeccccceeEEEEeecCCCCce
Q psy9775 56 FVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVV 92 (133)
Q Consensus 56 fVvtL~eVEiV~fERV~f~lKnFDmvfIfKDy~k~v~ 92 (133)
+--.|+.||-|.|.----.-...-|..||+|.++.|+
T Consensus 81 lhc~letvetvvfdlspk~nggirmavvf~dkhq~pv 117 (172)
T 3na2_A 81 LHCKLETVETVVFDLSPKDNGGIRMAVVFRDKHQAPV 117 (172)
T ss_dssp EEEEGGGCCEEEEEEEECTTSSEEEEEEEECTTSCEE
T ss_pred eeeeeeeeeEEEEecCcccCCCEEEEEEEeccccchh
Confidence 3356888888888765555566789999999987653
No 22
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=21.49 E-value=57 Score=21.49 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCCCceEEeeeeCCChHHHHhhhccCCceee
Q psy9775 87 YHRKVVMINAIPMNMLDHVKEWLKPHSHGSS 117 (133)
Q Consensus 87 y~k~v~~I~sIp~~~Ld~IKeWL~s~dI~y~ 117 (133)
|..+-+.|-.|..+.-+.+++|+...++.|.
T Consensus 53 ~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~ 83 (151)
T 3raz_A 53 QKKGSVDMVGIALDTSDNIGNFLKQTPVSYP 83 (151)
T ss_dssp SCTTTEEEEEEESSCHHHHHHHHHHSCCSSC
T ss_pred hccCCeEEEEEECCChHHHHHHHHHcCCCCc
Confidence 3333455566666778899999999888764
No 23
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function; 2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Probab=20.60 E-value=25 Score=27.78 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=37.1
Q ss_pred eeeeccccceeEEEEeecCCCCceEEeeeeCCChHHHHhhhcc
Q psy9775 69 ERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKP 111 (133)
Q Consensus 69 ERV~f~lKnFDmvfIfKDy~k~v~~I~sIp~~~Ld~IKeWL~s 111 (133)
-+|..-|+..+..++=++|+..|.-.-.+|.+.++.+++||.+
T Consensus 152 ~~v~~~l~~~~~~i~~~~y~~~V~~~l~v~~~~~~~~~~~l~~ 194 (217)
T 1vi7_A 152 TGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLAD 194 (217)
T ss_dssp HHHHHHHHHTTCEEEEEEESSSEEEEEEECSSTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEceEecCCEEEEEEECHHHHHHHHHHHHH
Confidence 3566678888999999999988888889999999999999864
No 24
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=20.17 E-value=34 Score=22.68 Aligned_cols=17 Identities=18% Similarity=0.065 Sum_probs=14.7
Q ss_pred hHHHHhhhccCCceeee
Q psy9775 102 LDHVKEWLKPHSHGSSE 118 (133)
Q Consensus 102 Ld~IKeWL~s~dI~y~E 118 (133)
=...|+||++.+|.|.+
T Consensus 36 C~~ak~~L~~~gi~~~~ 52 (109)
T 3ipz_A 36 SNTVVQILKNLNVPFED 52 (109)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHcCCCcEE
Confidence 46789999999999875
Done!