RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9775
(133 letters)
>2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region;
chromaint, double PH domain, yfact, DNA replication,
RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10
PDB: 2gcj_A
Length = 261
Score = 49.7 bits (118), Expect = 3e-08
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 19 EFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQF---QL 75
E+ + + + + + L P LT+ P I DV +V+ R
Sbjct: 157 EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTK-PTLYIPFSDVSMVNISRAGQTSTSS 215
Query: 76 KNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112
+ FD+ V + +R I ++++LK
Sbjct: 216 RTFDLEVVLRS-NRGSTTFANISKEEQQLLEQFLKSK 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.22
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 46/129 (35%)
Query: 1 MRIATGASMVEHVTKQEIEFDTPFRELGFPGAPY---------RSTVLLQP----TSGCL 47
+R A + E + +++ + F+E+ Y +T QP
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 48 VN-LTEW---PP---F----------------VISLED-VELVHF---------ERVQFQ 74
L P F V+S+E VE+V + R +
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 75 LKNFDMVFV 83
N+ M+ +
Sbjct: 1804 RSNYGMIAI 1812
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB:
2liw_A*
Length = 99
Score = 27.3 bits (61), Expect = 0.72
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 3 IATGASMVEHVTKQEIEFDTPFRELGF 29
+ + + + EI D F +LG
Sbjct: 26 LKQQLAEALYTEESEIAEDQKFVDLGL 52
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus}
SCOP: d.14.1.11 d.58.11.2
Length = 191
Score = 27.9 bits (62), Expect = 0.94
Identities = 7/52 (13%), Positives = 12/52 (23%)
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSE 118
RV L+ + V +P + L + G
Sbjct: 138 EVGRVYALLEARALKAEETYTPEGVRFALLLPKPEREGFLRALLDATRGQVA 189
>3o0y_A Lipoprotein; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics, lipid
protein; 1.70A {Colwellia psychrerythraea}
Length = 609
Score = 27.7 bits (61), Expect = 1.2
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 76 KNFDMVFVFKDYHRKVVMINAIPMNML-DHVKEWLK 110
FD+ ++H V++ A+PM +L +V WL
Sbjct: 576 DKFDL----AEFHDVVLLNGAVPMAVLSRNVNHWLD 607
>2ju1_A Erythronolide synthase; carrier protein domain, modular
polyketide synthase, alpha- helical bundle,
acyltransferase; NMR {Saccharopolyspora erythraea} PDB:
2ju2_A
Length = 95
Score = 26.8 bits (60), Expect = 1.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGF 29
A+++ H + + TPF+ELGF
Sbjct: 30 ATVLGHDDPKAVRATTPFKELGF 52
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein;
NMR {Pseudomonas fluorescens}
Length = 212
Score = 26.4 bits (58), Expect = 2.5
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 12 HVTKQEIEFDTPFRELGF 29
+ +I + F ELG
Sbjct: 40 YCEPGQIRDGSRFLELGL 57
Score = 26.4 bits (58), Expect = 3.0
Identities = 3/28 (10%), Positives = 9/28 (32%)
Query: 2 RIATGASMVEHVTKQEIEFDTPFRELGF 29
+ + + ++ F +LG
Sbjct: 134 YLKQSLGELLFLDPGQLRSGAQFLDLGM 161
>1vi7_A Hypothetical protein YIGZ; structural genomics, unknown function;
2.80A {Escherichia coli} SCOP: d.14.1.11 d.58.11.2
Length = 217
Score = 25.7 bits (56), Expect = 4.6
Identities = 11/52 (21%), Positives = 19/52 (36%)
Query: 67 HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSE 118
++ L D + DY V++ A+P + L S GS +
Sbjct: 150 QLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQ 201
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein;
solution structure, dynamics, ACP, biosynthetic
protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Length = 95
Score = 24.9 bits (54), Expect = 5.1
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 3 IATGASMVEHVTKQEIEFDTPFRELGF 29
+ A E + D F LG+
Sbjct: 13 LRECAGEEESIDLGGDVEDVAFDALGY 39
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A
{Artificial gene}
Length = 76
Score = 24.5 bits (53), Expect = 5.4
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 71 VQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGS 116
+ + L D + D V++ A+P + L S GS
Sbjct: 22 ILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGGS 67
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose,
carbohydrate, pyrophosphorylase; 1.95A {Escherichia
coli}
Length = 302
Score = 25.5 bits (57), Expect = 5.8
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 55 PFVISLEDVELVHFERVQFQLKNFDMVFVFKDYHRKVVMI 94
P + L DV L +E Q +M+ F + +M+
Sbjct: 130 PVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIMV 169
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase;
CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC,
sialic acid, glycosylation; HET: NCC; 2.80A {Mus
musculus} SCOP: c.68.1.13
Length = 229
Score = 25.7 bits (57), Expect = 5.8
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 28/86 (32%)
Query: 4 ATGASMVEHVTKQEIEFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDV 63
+T + E D +Q TS P + D+
Sbjct: 79 STSLDAIVEFLNYHNEVDI--------------VGNIQATS----------PC-LHPTDL 113
Query: 64 ELVHFERVQFQLKNFDMVFVFKDYHR 89
+ V E + + +D VF H+
Sbjct: 114 QKV-AE--MIREEGYDSVFSVVRRHQ 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 7.2
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 68 FERVQFQLKNFDMVFVF-----KDYHRKVV---MINAIPMNMLDHV 105
FE + Q + D++ VF ++ K V + + +DH+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A
{Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Length = 170
Score = 25.0 bits (54), Expect = 7.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 100 NMLDHVKEWLKPHSHGSSESTDM 122
N+L V+ WL+P GS S ++
Sbjct: 76 NLLQSVRIWLEPLPDGSLPSFEI 98
>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase,
PSI, MCSG, structural genomics; 2.40A {Pseudomonas
syringae PV}
Length = 310
Score = 25.2 bits (54), Expect = 8.6
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 41 QPTSGCLVNLTEWPPFVISLEDVE----LVHFERVQFQLK 76
+ G L+ ++ ED VHF R+ F+++
Sbjct: 270 EAVEGELMFTGR-EELILRREDNRAGVVHVHFPRLGFRVE 308
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 25.2 bits (55), Expect = 10.0
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 7 ASMVEHVTKQEIEFDTPFRELGF 29
A ++ I D+ +LG
Sbjct: 2133 AHILGIRDVASINPDSTLVDLGL 2155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.405
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,037,612
Number of extensions: 111055
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 20
Length of query: 133
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 50
Effective length of database: 4,384,350
Effective search space: 219217500
Effective search space used: 219217500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)