RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9775
         (133 letters)



>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 238

 Score = 94.9 bits (236), Expect = 1e-25
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 5/97 (5%)

Query: 19  EFDTPFRELGFPGAPYRSTVLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQ---FQL 75
           E+ + + +     +   +   L P       LT  P   I   DV +V+  R        
Sbjct: 138 EYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLT-KPTLYIPFSDVSMVNISRAGQTSTSS 196

Query: 76  KNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPH 112
           + FD+  V +   R       I       ++++LK  
Sbjct: 197 RTFDLEVVLRSN-RGSTTFANISKEEQQLLEQFLKSK 232


>d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 71

 Score = 27.8 bits (62), Expect = 0.12
 Identities = 11/57 (19%), Positives = 20/57 (35%)

Query: 67  HFERVQFQLKNFDMVFVFKDYHRKVVMINAIPMNMLDHVKEWLKPHSHGSSESTDMS 123
               ++  L   D   +  DY   V++  A+P   +      L   S GS +   + 
Sbjct: 13  QLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIE 69


>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
           yoelii yoelii [TaxId: 73239]}
          Length = 404

 Score = 25.1 bits (54), Expect = 3.8
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 38  VLLQPTSGCLVNLTEWPPFVISLEDVELVHFERVQFQLKNFD 79
           ++ +      + LT  PP  I+ E ++    E +   +K FD
Sbjct: 366 LITRDVHDKTIRLT--PPLCITKEQLDEC-TEIIVKTVKFFD 404


>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl
          carrier {Streptomyces rimosus [TaxId: 1927]}
          Length = 95

 Score = 23.8 bits (51), Expect = 4.4
 Identities = 6/27 (22%), Positives = 9/27 (33%)

Query: 3  IATGASMVEHVTKQEIEFDTPFRELGF 29
          +   A   E +       D  F  LG+
Sbjct: 13 LRECAGEEESIDLGGDVEDVAFDALGY 39


>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 76

 Score = 22.9 bits (49), Expect = 8.5
 Identities = 5/23 (21%), Positives = 9/23 (39%)

Query: 7  ASMVEHVTKQEIEFDTPFRELGF 29
          A ++       I  D+   +LG 
Sbjct: 14 AHILGIRDLAGINLDSSLADLGL 36


>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 186

 Score = 23.6 bits (50), Expect = 9.2
 Identities = 4/32 (12%), Positives = 8/32 (25%)

Query: 79  DMVFVFKDYHRKVVMINAIPMNMLDHVKEWLK 110
           D      D    +  I      +     + L+
Sbjct: 118 DRATFVVDPQGIIQAIEVTAEGIGRDASDLLR 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 495,390
Number of extensions: 21131
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 10
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)