BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9777
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure
pdb|3IHY|B Chain B, Human Pik3c3 Crystal Structure
pdb|3IHY|C Chain C, Human Pik3c3 Crystal Structure
pdb|3IHY|D Chain D, Human Pik3c3 Crystal Structure
pdb|3IHY|E Chain E, Human Pik3c3 Crystal Structure
Length = 600
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 2 RQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFK-SGAATVQNLKNRFHMNLTEEQL 60
R+ +T + + +L I+NL S L + + +P TV+ ++++F ++L++E+
Sbjct: 520 RKQCYTAFLHLRRYSNL--ILNLFS-LMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEA 576
Query: 61 QVLIDKLVDSSIHSL 75
+ L+D S+H+L
Sbjct: 577 VHYMQSLIDESVHAL 591
>pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
pdb|3LS8|B Chain B, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4-
Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol
Length = 614
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 2 RQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFK-SGAATVQNLKNRFHMNLTEEQL 60
R+ +T + + +L I+NL S + + + +P TV+ ++++F ++L++E+
Sbjct: 534 RKQCYTAFLHLRRYSNL--ILNLFSLM-VDANIPDIALEPDKTVKKVQDKFRLDLSDEEA 590
Query: 61 QVLIDKLVDSSIHSL 75
+ L+D S+H+L
Sbjct: 591 VHYMQSLIDESVHAL 605
>pdb|1S5L|U Chain U, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|UU Chain u, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|4IXQ|U Chain U, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|UU Chain u, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|U Chain U, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|UU Chain u, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 134
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNGI 90
LTE Q Q+L + L ++ + T L +G Y NG+
Sbjct: 97 LTERQKQILRENLEHFTVTEVETALVEGGDRYNNGL 132
>pdb|2AXT|U Chain U, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|UU Chain u, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|U Chain U, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|U Chain U, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
pdb|3KZI|U Chain U, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|U Chain U, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|U Chain U, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|U Chain U, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|HH Chain h, Fs X-Ray Diffraction Of Photosystem Ii
Length = 104
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNGI 90
LTE Q Q+L + L ++ + T L +G Y NG+
Sbjct: 67 LTERQKQILRENLEHFTVTEVETALVEGGDRYNNGL 102
>pdb|3ARC|U Chain U, Crystal Structure Of Oxygen-Evolving Photosystem Ii At
1.9 Angstrom Resolution
pdb|3ARC|UU Chain u, Crystal Structure Of Oxygen-Evolving Photosystem Ii At
1.9 Angstrom Resolution
Length = 97
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNGI 90
LTE Q Q+L + L ++ + T L +G Y NG+
Sbjct: 60 LTERQKQILRENLEHFTVTEVETALVEGGDRYNNGL 95
>pdb|3A0B|U Chain U, Crystal Structure Of Br-Substituted Photosystem Ii
Complex
pdb|3A0B|UU Chain u, Crystal Structure Of Br-Substituted Photosystem Ii
Complex
pdb|3A0H|U Chain U, Crystal Structure Of I-Substituted Photosystem Ii
Complex
pdb|3A0H|UU Chain u, Crystal Structure Of I-Substituted Photosystem Ii
Complex
Length = 98
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNGI 90
LTE Q Q+L + L ++ + T L +G Y NG+
Sbjct: 61 LTERQKQILRENLEHFTVTEVETALVEGGDRYNNGL 96
>pdb|3PIU|A Chain A, High-Resolution Structure Of Native Malus Domestica Acc
Synthase
Length = 410
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDG 82
V N N +T +L +L+ + D IH +S ++Y G
Sbjct: 180 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG 218
>pdb|1M7Y|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With L-
Aminoethoxyvinylglycine
pdb|1M4N|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
[2-(Amino-
Oxy)ethyl](5'-Deoxyadenosin-5'-Yl)(Methyl)sulfonium
Length = 435
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDG 82
V N N +T +L +L+ + D IH +S ++Y G
Sbjct: 197 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG 235
>pdb|1B8G|A Chain A, 1-aminocyclopropane-1-carboxylate Synthase
pdb|1B8G|B Chain B, 1-aminocyclopropane-1-carboxylate Synthase
Length = 429
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQY 85
V N N +T +L +L+ + D IH +S ++Y G +
Sbjct: 195 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAF 236
>pdb|1YNU|A Chain A, Crystal Structure Of Apple Acc Synthase In Complex With
L-Vinylglycine
Length = 473
Score = 25.4 bits (54), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDG 82
V N N +T +L +L+ + D IH +S ++Y G
Sbjct: 197 VTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSG 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,513,335
Number of Sequences: 62578
Number of extensions: 72855
Number of successful extensions: 273
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 11
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)