Query psy9777
Match_columns 91
No_of_seqs 110 out of 497
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:20:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0903|consensus 100.0 2.6E-34 5.7E-39 228.1 9.3 89 1-91 759-847 (847)
2 cd05167 PI4Kc_III_alpha Phosph 100.0 5.3E-30 1.1E-34 189.5 9.8 86 1-91 226-311 (311)
3 cd00893 PI4Kc_III Phosphoinosi 100.0 1.7E-29 3.6E-34 185.3 10.2 86 1-91 204-289 (289)
4 KOG0902|consensus 100.0 5.6E-29 1.2E-33 206.5 9.6 86 1-91 1717-1802(1803)
5 cd05168 PI4Kc_III_beta Phospho 100.0 1.3E-28 2.9E-33 180.9 10.5 89 1-91 205-293 (293)
6 cd00895 PI3Kc_C2_beta Phosphoi 99.9 2.6E-25 5.7E-30 166.7 9.9 84 1-88 271-354 (354)
7 cd05176 PI3Kc_C2_alpha Phospho 99.9 3.7E-25 8E-30 165.9 9.7 84 1-88 270-353 (353)
8 cd00896 PI3Kc_III Phosphoinosi 99.9 2.3E-23 5E-28 156.2 10.2 86 1-89 263-349 (350)
9 cd05175 PI3Kc_IA_alpha Phospho 99.9 2.7E-23 5.8E-28 156.4 7.9 79 1-84 282-361 (366)
10 cd05177 PI3Kc_C2_gamma Phospho 99.9 8.5E-23 1.8E-27 153.3 9.8 84 1-88 271-354 (354)
11 cd00894 PI3Kc_IB_gamma Phospho 99.9 5.8E-23 1.3E-27 154.7 8.1 85 1-89 281-365 (365)
12 cd05166 PI3Kc_II Phosphoinosit 99.9 1.2E-22 2.5E-27 152.6 9.7 84 1-88 270-353 (353)
13 cd00891 PI3Kc Phosphoinositide 99.9 1.6E-22 3.4E-27 151.8 9.7 84 1-88 269-352 (352)
14 cd05165 PI3Kc_I Phosphoinositi 99.9 7.5E-22 1.6E-26 148.8 8.5 82 1-87 282-364 (366)
15 cd05173 PI3Kc_IA_beta Phosphoi 99.8 5.6E-21 1.2E-25 143.9 9.6 83 1-87 277-360 (362)
16 cd05174 PI3Kc_IA_delta Phospho 99.8 9.4E-21 2E-25 142.6 9.4 82 1-86 277-359 (361)
17 KOG0906|consensus 99.7 2.1E-16 4.5E-21 125.5 9.1 85 1-88 755-840 (843)
18 KOG0904|consensus 99.6 1.7E-15 3.6E-20 123.1 5.9 78 1-83 993-1071(1076)
19 KOG0905|consensus 99.5 1.9E-13 4.1E-18 113.8 9.6 84 1-88 1264-1347(1639)
20 COG5032 TEL1 Phosphatidylinosi 99.3 2.3E-12 5.1E-17 112.9 5.0 89 1-91 2006-2100(2105)
21 smart00146 PI3Kc Phosphoinosit 97.5 0.00011 2.4E-09 51.3 3.3 36 1-39 164-199 (202)
22 PF00454 PI3_PI4_kinase: Phosp 96.5 0.0041 8.8E-08 43.6 3.9 36 1-39 200-235 (235)
23 cd00892 PIKKc_ATR ATR (Ataxia 94.1 0.074 1.6E-06 38.2 3.7 34 1-37 202-235 (237)
24 cd05169 PIKKc_TOR TOR (Target 93.8 0.089 1.9E-06 38.3 3.8 33 1-36 245-277 (280)
25 cd05171 PIKKc_ATM Ataxia telan 90.4 0.34 7.4E-06 35.5 3.3 30 1-32 244-273 (279)
26 cd05172 PIKKc_DNA-PK DNA-depen 86.3 0.9 1.9E-05 32.6 3.2 30 1-32 200-229 (235)
27 PLN02150 terpene synthase/cycl 81.8 2.5 5.4E-05 26.4 3.4 28 42-72 8-36 (96)
28 cd05170 PIKKc_SMG1 Suppressor 80.2 2.5 5.5E-05 31.4 3.5 30 1-32 272-301 (307)
29 KOG0173|consensus 78.9 4 8.7E-05 30.1 4.1 31 42-72 170-200 (271)
30 KOG2001|consensus 73.8 14 0.00031 30.8 6.4 50 34-84 234-283 (734)
31 cd00142 PI3Kc_like Phosphoinos 67.5 5.1 0.00011 28.1 2.3 19 12-30 200-218 (219)
32 cd03751 proteasome_alpha_type_ 67.1 16 0.00035 25.4 4.8 31 43-73 168-198 (212)
33 PF08766 DEK_C: DEK C terminal 65.8 20 0.00044 19.6 5.1 46 23-72 8-53 (54)
34 cd04449 DEP_DEPDC5-like DEP (D 65.5 12 0.00027 22.4 3.5 36 36-72 29-64 (83)
35 PF10045 DUF2280: Uncharacteri 62.1 6 0.00013 25.3 1.7 30 34-63 16-45 (104)
36 cd03753 proteasome_alpha_type_ 61.9 22 0.00048 24.5 4.7 31 43-73 170-200 (213)
37 cd04371 DEP DEP domain, named 61.8 21 0.00046 20.5 4.0 35 35-71 27-61 (81)
38 cd03761 proteasome_beta_type_5 61.4 22 0.00048 24.1 4.6 31 43-73 135-165 (188)
39 cd03752 proteasome_alpha_type_ 61.0 24 0.00053 24.3 4.8 31 43-73 169-199 (213)
40 cd03759 proteasome_beta_type_3 58.9 24 0.00053 24.0 4.5 31 43-73 140-170 (195)
41 cd03765 proteasome_beta_bacter 58.7 18 0.00038 26.0 3.8 31 44-74 154-184 (236)
42 TIGR03634 arc_protsome_B prote 56.5 32 0.00069 23.0 4.7 31 43-73 136-166 (185)
43 cd04450 DEP_RGS7-like DEP (Dis 55.0 28 0.00061 21.0 3.8 35 35-71 27-61 (88)
44 cd01911 proteasome_alpha prote 54.9 37 0.0008 23.3 4.9 32 43-74 166-197 (209)
45 PF00610 DEP: Domain found in 54.1 31 0.00066 19.6 3.7 36 35-71 16-52 (74)
46 PF03701 UPF0181: Uncharacteri 53.9 38 0.00083 19.0 4.1 40 34-73 5-46 (51)
47 cd03755 proteasome_alpha_type_ 53.8 36 0.00078 23.4 4.7 31 43-73 166-196 (207)
48 cd03756 proteasome_alpha_arche 53.3 38 0.00082 23.3 4.7 32 43-74 166-197 (211)
49 TIGR00756 PPR pentatricopeptid 52.7 23 0.0005 16.1 3.0 26 4-32 5-30 (35)
50 cd03763 proteasome_beta_type_7 52.4 42 0.00091 22.6 4.7 31 43-73 134-164 (189)
51 cd08811 CARD_IPS1 Caspase acti 51.9 21 0.00045 22.0 2.8 38 12-52 6-43 (84)
52 cd04438 DEP_dishevelled DEP (D 50.6 49 0.0011 20.0 4.4 35 35-70 28-62 (84)
53 cd03527 RuBisCO_small Ribulose 50.4 17 0.00037 22.9 2.4 20 51-70 8-27 (99)
54 smart00049 DEP Domain found in 50.3 41 0.00089 19.2 3.9 34 36-71 20-53 (77)
55 cd03762 proteasome_beta_type_6 50.1 44 0.00095 22.4 4.5 31 43-73 135-165 (188)
56 PF00227 Proteasome: Proteasom 49.5 49 0.0011 21.9 4.7 31 43-73 146-176 (190)
57 TIGR03643 conserved hypothetic 49.1 21 0.00045 21.4 2.4 27 53-79 23-50 (72)
58 PF01535 PPR: PPR repeat; Int 48.7 27 0.00058 15.7 2.6 25 5-32 6-30 (31)
59 PF13041 PPR_2: PPR repeat fam 48.6 29 0.00064 18.0 2.9 26 4-32 8-33 (50)
60 cd04447 DEP_BRCC3 DEP (Disheve 48.6 37 0.00081 21.2 3.6 36 36-72 29-70 (92)
61 PRK05114 hypothetical protein; 48.5 52 0.0011 18.9 4.1 41 34-74 5-47 (59)
62 PRK10304 ferritin; Provisional 48.3 36 0.00079 23.0 3.9 59 14-72 47-109 (165)
63 PF08784 RPA_C: Replication pr 48.1 31 0.00068 21.0 3.3 28 42-71 66-93 (102)
64 COG4281 ACB Acyl-CoA-binding p 47.8 34 0.00074 21.0 3.3 59 14-73 18-83 (87)
65 cd03750 proteasome_alpha_type_ 47.0 52 0.0011 22.9 4.7 31 43-73 165-195 (227)
66 TIGR03690 20S_bact_beta protea 45.7 54 0.0012 22.8 4.5 31 43-73 143-173 (219)
67 COG3140 Uncharacterized protei 45.6 58 0.0013 18.6 3.9 41 31-72 3-45 (60)
68 PRK03996 proteasome subunit al 45.3 55 0.0012 23.0 4.6 32 43-74 174-205 (241)
69 PF13737 DDE_Tnp_1_5: Transpos 45.2 17 0.00037 23.4 1.8 35 4-38 42-76 (112)
70 PF13812 PPR_3: Pentatricopept 45.1 34 0.00073 15.8 3.0 26 4-32 6-31 (34)
71 cd03758 proteasome_beta_type_2 44.8 56 0.0012 22.2 4.4 31 43-73 139-169 (193)
72 TIGR03691 20S_bact_alpha prote 44.7 58 0.0013 23.1 4.6 31 43-73 161-191 (228)
73 PF10985 DUF2805: Protein of u 43.3 29 0.00064 20.8 2.5 27 53-79 22-49 (73)
74 COG0713 NuoK NADH:ubiquinone o 43.2 38 0.00083 21.6 3.1 28 4-31 14-41 (100)
75 PF14394 DUF4423: Domain of un 43.1 51 0.0011 22.4 4.0 28 43-70 41-68 (171)
76 cd04442 DEP_1_DEP6 DEP (Dishev 42.3 44 0.00094 20.3 3.2 36 35-72 27-62 (82)
77 PTZ00488 Proteasome subunit be 42.3 63 0.0014 23.2 4.5 31 43-73 174-204 (247)
78 cd01906 proteasome_protease_Hs 41.3 86 0.0019 20.5 4.8 32 43-74 138-169 (182)
79 cd01912 proteasome_beta protea 40.9 49 0.0011 22.0 3.6 31 43-73 136-166 (189)
80 cd05164 PIKKc Phosphoinositide 40.9 26 0.00055 24.8 2.3 18 13-30 204-221 (222)
81 TIGR03633 arc_protsome_A prote 40.1 48 0.0011 23.0 3.6 30 44-73 168-197 (224)
82 CHL00130 rbcS ribulose-1,5-bis 39.9 33 0.00071 23.1 2.5 21 50-70 9-29 (138)
83 PRK09814 beta-1,6-galactofuran 39.5 95 0.0021 22.6 5.2 62 29-91 257-321 (333)
84 TIGR03823 FliZ flagellar regul 39.0 89 0.0019 21.6 4.6 61 13-89 106-168 (168)
85 cd04448 DEP_PIKfyve DEP (Dishe 38.4 88 0.0019 18.7 4.2 36 35-72 27-62 (81)
86 COG2442 Uncharacterized conser 38.2 29 0.00062 21.0 1.9 34 31-65 21-54 (79)
87 PF08181 DegQ: DegQ (SacQ) fam 38.2 19 0.00041 19.4 1.0 16 66-86 28-43 (46)
88 cd03760 proteasome_beta_type_4 37.7 83 0.0018 21.3 4.4 30 44-73 142-173 (197)
89 PF03540 TFIID_30kDa: Transcri 37.4 42 0.00092 18.7 2.4 20 59-78 31-50 (51)
90 cd03749 proteasome_alpha_type_ 37.3 93 0.002 21.4 4.7 31 43-73 163-195 (211)
91 cd04441 DEP_2_DEP6 DEP (Dishev 37.1 55 0.0012 20.0 3.1 35 36-72 32-66 (85)
92 PF11563 Protoglobin: Protoglo 35.8 73 0.0016 20.4 3.8 44 42-85 3-46 (158)
93 TIGR03552 F420_cofC 2-phospho- 35.6 53 0.0011 21.9 3.1 32 45-76 10-41 (195)
94 PF08230 Cpl-7: Cpl-7 lysozyme 35.4 25 0.00055 18.9 1.2 12 80-91 30-41 (42)
95 PF13708 Methyltransf_27: Meth 35.4 1.5E+02 0.0031 20.5 5.4 43 46-88 35-77 (194)
96 PLN02289 ribulose-bisphosphate 34.9 41 0.00089 23.5 2.5 21 50-70 71-91 (176)
97 PF07860 CCD: WisP family C-Te 34.2 96 0.0021 20.1 4.0 34 55-88 99-132 (141)
98 TIGR03015 pepcterm_ATPase puta 34.0 1.3E+02 0.0028 20.9 5.0 47 45-91 177-232 (269)
99 cd03757 proteasome_beta_type_1 33.6 95 0.0021 21.4 4.2 30 44-73 145-183 (212)
100 COG1133 SbmA ABC-type long-cha 33.5 67 0.0014 24.8 3.6 27 60-86 95-121 (405)
101 PRK14288 chaperone protein Dna 33.4 1E+02 0.0023 23.4 4.7 39 44-83 24-68 (369)
102 PTZ00246 proteasome subunit al 32.9 1.2E+02 0.0027 21.5 4.8 31 43-73 171-201 (253)
103 PRK09772 transcriptional antit 32.6 1.3E+02 0.0029 21.6 5.0 33 42-74 136-168 (278)
104 PRK13979 DNA topoisomerase IV 32.3 1.4E+02 0.003 26.1 5.7 50 2-64 387-436 (957)
105 cd03764 proteasome_beta_archea 32.2 84 0.0018 21.0 3.7 30 44-73 136-165 (188)
106 PF03945 Endotoxin_N: delta en 32.0 1.7E+02 0.0037 20.0 7.0 52 21-73 4-59 (226)
107 cd04446 DEP_DEPDC4 DEP (Dishev 32.0 1E+02 0.0022 19.2 3.8 37 35-72 26-69 (95)
108 cd04444 DEP_PLEK2 DEP (Disheve 30.8 1.2E+02 0.0026 19.5 4.0 42 35-78 30-72 (109)
109 COG3937 Uncharacterized conser 30.7 68 0.0015 20.7 2.8 20 54-73 38-57 (108)
110 cd04443 DEP_GPR155 DEP (Dishev 30.6 99 0.0021 18.6 3.5 36 35-72 29-64 (83)
111 PF14144 DOG1: Seed dormancy c 30.6 1.3E+02 0.0027 18.1 4.6 29 44-72 3-32 (80)
112 PRK05231 homoserine kinase; Pr 30.4 1E+02 0.0022 22.0 4.1 30 54-83 256-285 (319)
113 KOG0174|consensus 30.2 75 0.0016 22.8 3.2 28 46-73 157-184 (224)
114 COG3623 SgaU Putative L-xylulo 29.2 1.4E+02 0.003 22.3 4.5 46 19-72 54-102 (287)
115 PF11112 PyocinActivator: Pyoc 29.1 94 0.002 18.5 3.1 37 24-65 2-38 (76)
116 PF00101 RuBisCO_small: Ribulo 29.0 56 0.0012 20.6 2.2 22 51-72 7-28 (99)
117 cd03163 TM4SF8_like_LEL Tetras 28.8 1.3E+02 0.0028 17.9 3.9 9 77-85 30-38 (105)
118 COG0638 PRE1 20S proteasome, a 28.4 1.6E+02 0.0035 20.9 4.8 32 42-73 166-197 (236)
119 cd00435 ACBP Acyl CoA binding 28.4 83 0.0018 19.0 2.8 58 18-75 21-84 (85)
120 PF09682 Holin_LLH: Phage holi 28.3 1.2E+02 0.0025 19.0 3.6 34 42-75 72-108 (108)
121 PF08361 TetR_C_2: MAATS-type 27.9 63 0.0014 20.3 2.4 28 49-76 69-96 (121)
122 PF00887 ACBP: Acyl CoA bindin 27.9 68 0.0015 19.1 2.4 26 50-75 61-86 (87)
123 PF04255 DUF433: Protein of un 27.9 32 0.00069 19.0 0.9 34 31-65 9-42 (56)
124 cd07641 BAR_ASAP1 The Bin/Amph 27.8 2.4E+02 0.0051 20.4 5.9 72 14-87 14-90 (215)
125 PRK11582 flagella biosynthesis 27.8 2.1E+02 0.0046 19.8 5.1 61 13-89 106-168 (169)
126 PF13232 Complex1_LYR_1: Compl 27.6 86 0.0019 17.2 2.7 42 32-74 15-56 (61)
127 COG3941 Mu-like prophage prote 27.6 3.3E+02 0.0072 22.7 6.7 76 4-90 264-340 (633)
128 PRK00034 gatC aspartyl/glutamy 27.4 1.4E+02 0.0031 17.8 3.8 26 41-66 5-30 (95)
129 PF08359 TetR_C_4: YsiA-like p 26.9 1E+02 0.0022 19.1 3.2 27 50-76 85-111 (133)
130 cd04437 DEP_Epac DEP (Dishevel 26.8 1.2E+02 0.0026 19.8 3.6 37 35-72 29-65 (125)
131 PRK14278 chaperone protein Dna 26.8 1.2E+02 0.0026 23.2 4.1 40 43-83 23-67 (378)
132 PRK14299 chaperone protein Dna 26.4 1.4E+02 0.003 21.9 4.3 42 44-85 25-70 (291)
133 PRK06397 V-type ATP synthase s 25.7 98 0.0021 19.8 2.9 25 48-72 85-109 (111)
134 PF06057 VirJ: Bacterial virul 25.6 1.5E+02 0.0033 20.9 4.1 48 24-78 21-68 (192)
135 PF14880 COX14: Cytochrome oxi 25.6 64 0.0014 18.1 1.9 15 74-88 4-18 (59)
136 PHA02924 hypothetical protein; 25.5 58 0.0012 22.2 1.9 39 18-58 116-154 (156)
137 cd01068 sensor_globin Globin d 25.3 1.8E+02 0.0039 18.3 4.2 20 62-81 21-40 (147)
138 cd01056 Euk_Ferritin eukaryoti 25.1 1.2E+02 0.0025 20.0 3.4 56 14-72 50-110 (161)
139 PRK14283 chaperone protein Dna 24.9 1.3E+02 0.0029 22.9 4.0 40 43-83 25-69 (378)
140 PF05697 Trigger_N: Bacterial 24.1 1.1E+02 0.0023 19.8 3.0 42 29-71 37-78 (145)
141 cd08778 Death_TNFRSF21 Death d 24.0 1.4E+02 0.003 17.9 3.1 22 64-88 5-26 (84)
142 PF01637 Arch_ATPase: Archaeal 23.8 90 0.0019 20.6 2.7 37 54-91 190-228 (234)
143 cd07632 BAR_APPL2 The Bin/Amph 23.7 2.3E+02 0.005 20.4 4.8 41 44-85 47-90 (215)
144 COG3454 Metal-dependent hydrol 23.3 65 0.0014 25.0 2.0 48 22-73 157-206 (377)
145 PF08700 Vps51: Vps51/Vps67; 23.2 1.6E+02 0.0035 17.0 5.0 45 43-87 7-54 (87)
146 PF12140 DUF3588: Protein of u 23.1 1E+02 0.0022 20.1 2.6 33 42-74 22-54 (118)
147 cd03156 uroplakin_I_like_LEL T 22.7 1.8E+02 0.0039 17.2 3.7 9 77-85 32-40 (114)
148 cd06206 bifunctional_CYPOR The 22.5 1.7E+02 0.0036 22.1 4.1 17 54-70 360-376 (384)
149 KOG0262|consensus 22.5 34 0.00073 30.9 0.4 51 26-76 930-987 (1640)
150 COG3396 Uncharacterized conser 22.4 1.2E+02 0.0025 22.6 3.1 60 21-84 120-186 (265)
151 PHA01794 hypothetical protein 22.2 1.8E+02 0.0039 19.4 3.7 28 3-30 83-110 (134)
152 PRK14298 chaperone protein Dna 22.1 1.4E+02 0.0029 22.9 3.6 40 43-83 25-69 (377)
153 TIGR00135 gatC glutamyl-tRNA(G 22.1 1.9E+02 0.0041 17.3 3.8 25 42-66 4-28 (93)
154 PF02885 Glycos_trans_3N: Glyc 22.0 89 0.0019 17.6 2.0 20 53-72 13-32 (66)
155 KOG2758|consensus 22.0 91 0.002 24.4 2.6 27 44-72 352-378 (432)
156 cd04439 DEP_1_P-Rex DEP (Dishe 21.8 1.5E+02 0.0032 17.7 3.1 36 35-72 27-62 (81)
157 PRK08943 lipid A biosynthesis 21.0 3.4E+02 0.0074 19.8 5.6 36 43-83 66-101 (314)
158 PRK07375 putative monovalent c 21.0 1.2E+02 0.0027 19.1 2.7 28 4-31 12-39 (112)
159 PRK14287 chaperone protein Dna 20.8 2E+02 0.0044 21.9 4.3 38 45-83 26-68 (371)
160 COG4817 DNA-binding ferritin-l 20.5 1.8E+02 0.0039 18.8 3.3 29 57-85 76-104 (111)
161 PF03936 Terpene_synth_C: Terp 20.4 74 0.0016 22.0 1.8 20 54-73 248-267 (270)
162 KOG2305|consensus 20.3 2.5E+02 0.0055 21.0 4.5 46 14-63 249-294 (313)
163 PF06683 DUF1184: Protein of u 20.3 1.5E+02 0.0032 20.9 3.1 42 42-83 135-176 (191)
164 cd03795 GT1_like_4 This family 20.3 3.1E+02 0.0067 19.1 6.0 60 23-84 281-348 (357)
165 PF08134 cIII: cIII protein fa 20.2 1.6E+02 0.0034 15.8 2.5 17 56-72 18-34 (44)
166 TIGR02147 Fsuc_second hypothet 20.2 2.8E+02 0.0061 20.4 4.8 27 43-69 139-165 (271)
167 PRK06860 lipid A biosynthesis 20.1 3.3E+02 0.0071 19.8 5.2 35 43-82 61-95 (309)
168 PLN02999 photosystem II oxygen 20.1 1.2E+02 0.0027 21.4 2.7 22 44-65 72-94 (190)
169 PF01817 CM_2: Chorismate muta 20.1 1.9E+02 0.0042 16.6 6.3 44 29-73 30-76 (81)
No 1
>KOG0903|consensus
Probab=100.00 E-value=2.6e-34 Score=228.05 Aligned_cols=89 Identities=42% Similarity=0.732 Sum_probs=87.1
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+.||.+|| +|+|||+++|+.|||+|+++|.+|||.+|++++++||+||++++||+|+..+|+.||++|+++|+|++|
T Consensus 759 fK~L~l~gf--~a~RKhadrIv~lvEiMq~~S~~pCF~aG~~Ti~nL~~RFhLslTEeq~~~lV~~LI~kS~~S~~TrlY 836 (847)
T KOG0903|consen 759 FKSLMLQGF--MALRKHADRIVLLVEIMQDGSGMPCFRAGERTIQNLRQRFHLSLTEEQCQDLVLSLISKSLDSITTRLY 836 (847)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHhhccCCCcccccChHHHHHHHHHhcccccHHHHHHHHHHHHhhcccchhhhhh
Confidence 789999999 999999999999999999977799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9777 81 DGFQYYTNGIL 91 (91)
Q Consensus 81 D~fQ~~tnGI~ 91 (91)
|.|||+||||+
T Consensus 837 D~fQyitnGI~ 847 (847)
T KOG0903|consen 837 DSFQYITNGIY 847 (847)
T ss_pred HHHHHHhcccC
Confidence 99999999996
No 2
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=99.96 E-value=5.3e-30 Score=189.50 Aligned_cols=86 Identities=30% Similarity=0.518 Sum_probs=83.5
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|+|++.|++|+++|.+++ +|||+. +++.++++||++++||+||++++.++|++|++||+|++|
T Consensus 226 F~~~~~~~~--~~lR~~~~~il~l~~lm~~s~-lp~~~~--~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~y 300 (311)
T cd05167 226 FVELCVRAF--LAVRPYMDEIVSLVELMLDSG-LPCFRG--DTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGY 300 (311)
T ss_pred HHHHHHHHH--HHHHcCHHHHHHHHHHHHcCC-chhhhH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 789999999 999999999999999999988 999984 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9777 81 DGFQYYTNGIL 91 (91)
Q Consensus 81 D~fQ~~tnGI~ 91 (91)
|+||++||||.
T Consensus 301 D~~q~~~~gi~ 311 (311)
T cd05167 301 DQFQYYQNGIP 311 (311)
T ss_pred HHHHHHhcCCC
Confidence 99999999995
No 3
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=99.96 E-value=1.7e-29 Score=185.33 Aligned_cols=86 Identities=37% Similarity=0.657 Sum_probs=83.6
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|+|++.|++++++|++++ +|||+. +++.++++||++++||+||++++.++|++|++||+|++|
T Consensus 204 F~~~c~~~~--~~lR~~~~~il~ll~~m~~~~-lp~~~~--~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~y 278 (289)
T cd00893 204 FRYLCLRGF--IAVRKHMDLVISLVYLLIFSG-LPCFRG--STIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLY 278 (289)
T ss_pred HHHHHHHHH--HHHhhCHHHHHHHHHHHccCC-CcccCH--HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 789999999 999999999999999999998 999984 899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9777 81 DGFQYYTNGIL 91 (91)
Q Consensus 81 D~fQ~~tnGI~ 91 (91)
|.||++||||.
T Consensus 279 D~~q~~~~gi~ 289 (289)
T cd00893 279 DKVQYYQNGII 289 (289)
T ss_pred HHHHHHHCCCC
Confidence 99999999995
No 4
>KOG0902|consensus
Probab=99.96 E-value=5.6e-29 Score=206.50 Aligned_cols=86 Identities=30% Similarity=0.542 Sum_probs=84.2
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|.+||++|| ||+|+|++.|+++|++|+++| ||||+| .+|.++|.||+|++||.||+.+|..+|.+|+++|+|+.|
T Consensus 1717 f~elcVk~y--LA~R~~~~~iv~~V~~mldsg-LPCfrg--~~i~nl~~RF~pemsereAa~fm~~vi~~~~~~~rt~~Y 1791 (1803)
T KOG0902|consen 1717 FQELCVKGY--LAARPYMDAIVSLVQSMLDSG-LPCFRG--QTIGNLRARFAPEMSEREAALFMLSVITDSYLKIRTKMY 1791 (1803)
T ss_pred HHHHHHHHH--HhhchhHHHHHHHHHHHHhcC-CCccCc--chHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999 999999999999999999999 999987 799999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9777 81 DGFQYYTNGIL 91 (91)
Q Consensus 81 D~fQ~~tnGI~ 91 (91)
|+|||+||||+
T Consensus 1792 D~~Q~~~n~I~ 1802 (1803)
T KOG0902|consen 1792 DQIQYLQNGIP 1802 (1803)
T ss_pred HHHHHHhcCCC
Confidence 99999999995
No 5
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=99.96 E-value=1.3e-28 Score=180.85 Aligned_cols=89 Identities=44% Similarity=0.800 Sum_probs=85.0
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
||++|++|| .++|+|++.|++++++|+.++.+|||++++.++.++++||++++||++|++++.++|++|++||+|++|
T Consensus 205 F~~~c~~~~--~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~l~~r~~l~~se~~a~~~~~~lI~~s~~~~~t~~y 282 (293)
T cd05168 205 FKKLFLKGF--MALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQLRDRFMLNLTEEQLEVFVDELINQSLDNWRTRLY 282 (293)
T ss_pred HHHHHHHHH--HHHHhchHHHHHHHHHHccCCCCccccCchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHH
Confidence 799999999 999999999999999999995599999545899999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q psy9777 81 DGFQYYTNGIL 91 (91)
Q Consensus 81 D~fQ~~tnGI~ 91 (91)
|+||+++|||+
T Consensus 283 D~~q~~~~gi~ 293 (293)
T cd05168 283 DKFQYLTNGIL 293 (293)
T ss_pred HHHHHHhcCCC
Confidence 99999999996
No 6
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=99.92 E-value=2.6e-25 Score=166.75 Aligned_cols=84 Identities=15% Similarity=0.158 Sum_probs=80.6
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|||++.|++|+++|+++| +|||+. .+++.++++||+|++||+||.+|+.++|++|++||+|++|
T Consensus 271 F~~lc~~ay--~~lRk~~~~il~L~~lM~~sg-iP~l~~-~~~i~~l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~ 346 (354)
T cd00895 271 FVDLCCQAY--NLIRKHTHLFLNLLGLMLSCG-IPELSD-LEDLKYVYDALRPQDTEADATTYFTRLIESSLGSVATKLN 346 (354)
T ss_pred HHHHHHHHH--HHHHHhHHHHHHHHHHHHcCC-CcccCc-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHH
Confidence 789999999 999999999999999999988 999987 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9777 81 DGFQYYTN 88 (91)
Q Consensus 81 D~fQ~~tn 88 (91)
|.+|.+.|
T Consensus 347 ~~~H~~aq 354 (354)
T cd00895 347 FFIHNLAQ 354 (354)
T ss_pred HHHHHhcC
Confidence 99998864
No 7
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=99.92 E-value=3.7e-25 Score=165.91 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=80.4
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|||++.|++|+++|+++| +|||++ +.++.++++||++++||+||.+++.++|++|++||+|+++
T Consensus 270 F~~lc~~af--~~LRk~~~~il~L~~lM~~s~-iP~~~~-~~~i~~l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~ 345 (353)
T cd05176 270 FVDLCCQAY--NLIRKHSNLFLNLLSLMTQSG-LPELTG-VQDLKYVYDALQPQTTDAEATIFFTRLIESSLGSVATKFN 345 (353)
T ss_pred HHHHHHHHH--HHHHHhHHHHHHHHHHHhCCC-CcccCC-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHH
Confidence 789999999 999999999999999999988 999986 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9777 81 DGFQYYTN 88 (91)
Q Consensus 81 D~fQ~~tn 88 (91)
|.+|.+.|
T Consensus 346 ~~~H~~aq 353 (353)
T cd05176 346 FFIHNLAQ 353 (353)
T ss_pred HHHHHhcC
Confidence 99998864
No 8
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=99.90 E-value=2.3e-23 Score=156.21 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=81.7
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSG-AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~-~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~ 79 (91)
|+++|++|| +++|+|++.|++++++|.+++ +|||+.. .+++.++++||++++||+||.+++.++|++|++||+|++
T Consensus 263 F~~~c~~~~--~~lR~~~~~il~l~~lm~~~~-ip~~~~~~~~~i~~l~~rf~l~~s~~ea~~~~~~lI~~s~~~~~t~~ 339 (350)
T cd00896 263 FKSYCCEAY--NILRKSANLILNLFSLMVDAN-IPDIALDPDKAILKVQEKFRLDLSDEEAIKHFQNLINDSVNALFPVV 339 (350)
T ss_pred HHHHHHHHH--HHHHhCHHHHHHHHHHHcCCC-CcccccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHH
Confidence 799999999 999999999999999999998 9999853 478999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q psy9777 80 YDGFQYYTNG 89 (91)
Q Consensus 80 YD~fQ~~tnG 89 (91)
||.+|.+++.
T Consensus 340 ~d~~h~~aq~ 349 (350)
T cd00896 340 VDRLHAWAQY 349 (350)
T ss_pred HHHHHHHHhh
Confidence 9999999863
No 9
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.89 E-value=2.7e-23 Score=156.43 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=73.9
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh-chhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH-SLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~-~~~T~~ 79 (91)
|+++|++|| +++|||++.|++|+++|.++| +|||++ ..++.++|+||++++||+||.+++.++|++|++ +|+|+
T Consensus 282 F~~lc~~ay--~~lRk~~~~ii~L~~lM~~sg-iP~l~~-~~~i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~- 356 (366)
T cd05175 282 FQEMCYKAY--LAIRQHANLFINLFSMMLGSG-MPELQS-FDDIAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTK- 356 (366)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHhcCC-CcccCC-ccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceee-
Confidence 789999999 999999999999999999998 999987 478999999999999999999999999999986 78888
Q ss_pred HHHHH
Q psy9777 80 YDGFQ 84 (91)
Q Consensus 80 YD~fQ 84 (91)
||||=
T Consensus 357 ~n~~~ 361 (366)
T cd05175 357 MDWIF 361 (366)
T ss_pred ehHHH
Confidence 88764
No 10
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=99.89 E-value=8.5e-23 Score=153.33 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=79.8
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|+|++.|++++++|++++ +|||++ ..++.++++||+|++||+||.+++.++|++|+++|.|++.
T Consensus 271 F~~~c~~a~--~~lR~~~~~il~l~~lm~~s~-iP~~~~-~~~i~~l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~ 346 (354)
T cd05177 271 FVELCCRAY--NIVRKHSQLLLNLLEMMLHAG-LPELKD-IQDLKYVYNNLRPQDTDLEATSYFTKKIKESLECFPVKLN 346 (354)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHhcCC-CcccCc-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHH
Confidence 789999999 999999999999999999998 999986 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9777 81 DGFQYYTN 88 (91)
Q Consensus 81 D~fQ~~tn 88 (91)
|.+|.+.+
T Consensus 347 ~~~H~~aq 354 (354)
T cd05177 347 NLIHTLAQ 354 (354)
T ss_pred HHHHHhcC
Confidence 99998754
No 11
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.88 E-value=5.8e-23 Score=154.67 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=80.3
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|+|++.|++|+++|+++| +|||++ .+++.++|+||++++||+||.+++.++|++|+++|+|.+|
T Consensus 281 F~~~c~~a~--~~LRk~~~lil~L~~lM~~sg-ip~l~~-~~~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~ 356 (365)
T cd00894 281 FQDVCVKAY--LALRHHTNLLIILFSMMLMTG-MPQLTS-KEDIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQF 356 (365)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHhcCC-CcccCc-chHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeee
Confidence 799999999 999999999999999999998 999986 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy9777 81 DGFQYYTNG 89 (91)
Q Consensus 81 D~fQ~~tnG 89 (91)
|||.+..-|
T Consensus 357 n~~~h~~~~ 365 (365)
T cd00894 357 NWFLHLVLG 365 (365)
T ss_pred HHHHHHhcC
Confidence 999886544
No 12
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=99.88 E-value=1.2e-22 Score=152.56 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=80.6
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|+|++.|++|+++|+.++ +|||++ .+++.++++||++++||+||++++.++|++|++||+|++.
T Consensus 270 F~~~c~~~~--~~lRk~~~~il~ll~~ml~s~-lp~~~~-~~~i~~l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~ 345 (353)
T cd05166 270 FVDLCCRAY--NIIRKHANLLLNLLRMMACSG-LPELSK-IQDLKYVRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLN 345 (353)
T ss_pred HHHHHHHHH--HHHHcChHHHHHHHHHHhcCC-CcccCc-hhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 799999999 999999999999999999998 999986 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9777 81 DGFQYYTN 88 (91)
Q Consensus 81 D~fQ~~tn 88 (91)
|.+|.+.|
T Consensus 346 ~~~H~~aq 353 (353)
T cd05166 346 FFIHNLAQ 353 (353)
T ss_pred HHHHHhcC
Confidence 99998764
No 13
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=99.88 E-value=1.6e-22 Score=151.79 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=80.6
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|+++|++|| +++|+|++.|++++++|+.+| +|||++ .+++.++++||++++||+||.+++.++|++|+++|+|++|
T Consensus 269 F~~~c~~~~--~~LR~~~~~il~l~~lm~~~~-lp~~~~-~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~ 344 (352)
T cd00891 269 FEDLCCKAY--NILRKHGNLFINLFSLMLSAG-IPELQS-IEDIEYLRDALALDKSDEEATEYFRKLIHESLNSKTTKVN 344 (352)
T ss_pred HHHHHHHHH--HHHhcCHHHHHHHHHhhccCC-CCccCc-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHH
Confidence 799999999 999999999999999999998 999986 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9777 81 DGFQYYTN 88 (91)
Q Consensus 81 D~fQ~~tn 88 (91)
|.+|.+++
T Consensus 345 ~~~h~~~~ 352 (352)
T cd00891 345 NFIHNLAH 352 (352)
T ss_pred HHHHHhhC
Confidence 99998864
No 14
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=99.86 E-value=7.5e-22 Score=148.77 Aligned_cols=82 Identities=17% Similarity=0.213 Sum_probs=76.1
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh-chhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH-SLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~-~~~T~~ 79 (91)
||++|++|| +++|+|++.|++|+++|+++| +|||++ ++++.++|+||++++||+||.+++.++|++|++ +|+| .
T Consensus 282 F~~~c~~a~--~~LR~~~~~il~l~~lM~~s~-ip~~~~-~~~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t-~ 356 (366)
T cd05165 282 FQDLCEKAY--LALRRHGNLLIILFSMMLMSG-LPELTS-KEDIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTT-K 356 (366)
T ss_pred HHHHHHHHH--HHHHhCHHHHHHHHHHHhcCC-CcccCc-hhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCcee-e
Confidence 899999999 999999999999999999998 999996 578999999999999999999999999999997 5777 8
Q ss_pred HHHHHHHH
Q psy9777 80 YDGFQYYT 87 (91)
Q Consensus 80 YD~fQ~~t 87 (91)
||||-+..
T Consensus 357 ~~~~~H~~ 364 (366)
T cd05165 357 FNWFSHLV 364 (366)
T ss_pred eHHHHHHh
Confidence 89887643
No 15
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=99.85 E-value=5.6e-21 Score=143.90 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=77.9
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh-hchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~-~~~~T~~ 79 (91)
|+++|++|| +++|+|++.|++|+++|+++| +|||++ ..++.++++||++++||+||++++.++|++|+ ++|+|++
T Consensus 277 F~~~c~~a~--~~LRk~~~lil~l~~lM~~s~-ip~~~~-~~~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~ 352 (362)
T cd05173 277 FRQYCEDAY--LILRKNGNLFITLFALMLTAG-LPELTS-VKDIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKV 352 (362)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHhcCC-Cccccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhh
Confidence 799999999 999999999999999999998 999986 57899999999999999999999999999999 4899998
Q ss_pred HHHHHHHH
Q psy9777 80 YDGFQYYT 87 (91)
Q Consensus 80 YD~fQ~~t 87 (91)
=..++.+.
T Consensus 353 n~~~H~~~ 360 (362)
T cd05173 353 NWMAHTVR 360 (362)
T ss_pred HHHHHHhc
Confidence 88878764
No 16
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=99.84 E-value=9.4e-21 Score=142.60 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=76.6
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh-hchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~-~~~~T~~ 79 (91)
|+++|++|| +++|+|++.|++|+++|.++| +|||+. +.++.++|+||++++||+||++++.++|++|+ ++|+|++
T Consensus 277 F~~~c~~a~--~~LRk~~~~il~l~~lM~~sg-ip~~~~-~~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~ 352 (361)
T cd05174 277 FRGYCEQAY--KILRRHGTLFLHLFALMKAAG-LPELNC-SKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKV 352 (361)
T ss_pred HHHHHHHHH--HHHHhhHHHHHHHHHHHhcCC-CCccCc-hhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhh
Confidence 789999999 999999999999999999998 999987 58999999999999999999999999999999 6999998
Q ss_pred HHHHHHH
Q psy9777 80 YDGFQYY 86 (91)
Q Consensus 80 YD~fQ~~ 86 (91)
=+.+|.+
T Consensus 353 n~~~H~~ 359 (361)
T cd05174 353 NWLAHNV 359 (361)
T ss_pred HHHHHhh
Confidence 7776654
No 17
>KOG0906|consensus
Probab=99.68 E-value=2.1e-16 Score=125.50 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=80.6
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSG-AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~-~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~ 79 (91)
||..|..|| +++|+|++.|++|+++|.+++ +|.++-. .++|.++++||+++|||++|.+|++++|++|+++..+.+
T Consensus 755 F~s~c~~Af--~~LRRssnlIlnLf~LM~~~~-IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v 831 (843)
T KOG0906|consen 755 FRSYCYEAF--LILRRSSNLILNLFSLMADAN-IPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNALFPQV 831 (843)
T ss_pred HHHHHHHHH--HHHHHhccHHHHHHHHHhcCC-CCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999 999999999999999999999 9999963 468999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy9777 80 YDGFQYYTN 88 (91)
Q Consensus 80 YD~fQ~~tn 88 (91)
-|..+.+.+
T Consensus 832 ~d~ih~~aq 840 (843)
T KOG0906|consen 832 VDLIHRLAQ 840 (843)
T ss_pred HHHHHHHHH
Confidence 999998865
No 18
>KOG0904|consensus
Probab=99.59 E-value=1.7e-15 Score=123.07 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=71.7
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc-hhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS-LSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~-~~T~~ 79 (91)
||++|++|| +|+|+|.+.+++|++||+.+| ||.+++ .++|+++|+.+.++.|||||.+|+.+.++++++. |+|+
T Consensus 993 Fq~~C~~AY--l~lr~H~nLfi~LFsmMl~~g-lPELss-~~Di~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk- 1067 (1076)
T KOG0904|consen 993 FQELCEKAY--LALRRHGNLFISLFSMMLGTG-LPELSS-KKDIDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTK- 1067 (1076)
T ss_pred HHHHHHHHH--HHHHHccccHHHHHHHHHhcC-CCcccc-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceee-
Confidence 899999999 999999999999999999999 999998 6899999999999999999999999999999955 5554
Q ss_pred HHHH
Q psy9777 80 YDGF 83 (91)
Q Consensus 80 YD~f 83 (91)
.+|+
T Consensus 1068 ~NW~ 1071 (1076)
T KOG0904|consen 1068 VNWL 1071 (1076)
T ss_pred ehhh
Confidence 4554
No 19
>KOG0905|consensus
Probab=99.48 E-value=1.9e-13 Score=113.79 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=78.7
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
|-+|||+|| ..+|||.+.+++|+++|..+| +|.+.+ -++++++++-++|..||.||..++.++|..|+++|.|++=
T Consensus 1264 FVDlCCrAy--NiiRK~t~lllnlL~lM~~ag-iPeln~-i~dLkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklN 1339 (1639)
T KOG0905|consen 1264 FVDLCCRAY--NIIRKNTNLLLNLLRLMACAG-IPELNS-IQDLKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLN 1339 (1639)
T ss_pred HHHHHHHHH--HHHHHhHHHHHHHHHHHHhcC-CCCccc-hhhHHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHH
Confidence 678999999 999999999999999999999 999986 6899999999999999999999999999999999999987
Q ss_pred HHHHHHHh
Q psy9777 81 DGFQYYTN 88 (91)
Q Consensus 81 D~fQ~~tn 88 (91)
--.+.+.|
T Consensus 1340 ffiHnLAQ 1347 (1639)
T KOG0905|consen 1340 FFIHNLAQ 1347 (1639)
T ss_pred HHHHHHHH
Confidence 77776655
No 20
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=99.30 E-value=2.3e-12 Score=112.87 Aligned_cols=89 Identities=26% Similarity=0.390 Sum_probs=83.5
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCC-----CCCCcc-cchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSS-----QLPCFK-SGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~-----~lPcf~-~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
||++|+.+| .++|||++.|++++|+|+.+. ..||++ .+..++.++.+||+..+++.++..++.-+|++|+++
T Consensus 2006 Fr~~c~~~~--~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~ 2083 (2105)
T COG5032 2006 FRELCETAF--RALRKNADSLMNVLELFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVES 2083 (2105)
T ss_pred HHHHHHHHH--HHHhccHHHHHHHHHHHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHH
Confidence 799999999 999999999999999999994 499999 445788889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCC
Q psy9777 75 LSTKLYDGFQYYTNGIL 91 (91)
Q Consensus 75 ~~T~~YD~fQ~~tnGI~ 91 (91)
..|..||.+|..++||.
T Consensus 2084 li~~a~d~~~L~~~yi~ 2100 (2105)
T COG5032 2084 LITQATDPFQLATMYIG 2100 (2105)
T ss_pred HHHHHcCHHHHHhhccc
Confidence 99999999999999984
No 21
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=97.49 E-value=0.00011 Score=51.29 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=34.4
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCccc
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKS 39 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~ 39 (91)
|+..|++++ .++|+|.+.|++++++|+.++ +||+.+
T Consensus 164 F~~~~~~~~--~~Lr~~~~~i~~~l~~~~~d~-l~~~~~ 199 (202)
T smart00146 164 FRSLCERAL--RALRKNSNLIMSLLELMLYDG-LPDWRS 199 (202)
T ss_pred HHHHHHHHH--HHHHcCHHHHHHHHHHHcCCC-ChhhcC
Confidence 789999999 999999999999999999998 999986
No 22
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=96.47 E-value=0.0041 Score=43.62 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=33.0
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCccc
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKS 39 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~ 39 (91)
|+..|..++ .++|+|.+.|++++++|..++ ++++++
T Consensus 200 f~~~~~~~~--~~lr~~~~~l~~ll~~~~~d~-l~~w~~ 235 (235)
T PF00454_consen 200 FRSSCEAIL--RALRRNKDLLLSLLELFLRDP-LIDWRK 235 (235)
T ss_dssp HHHHHHHHH--HHHHHTHHHHHHHHHHTTTSC-STTSS-
T ss_pred HHHHHHHHH--HHHhcChHHHHHHHHHHHhCC-CCCCCC
Confidence 688999999 999999999999999999998 998863
No 23
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=94.07 E-value=0.074 Score=38.16 Aligned_cols=34 Identities=6% Similarity=-0.051 Sum_probs=30.1
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCc
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCF 37 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf 37 (91)
|+..|+.++ .++|+|.+.|++++++++.+. +=++
T Consensus 202 F~~~~~~~~--~~Lr~~~~~l~~~l~~fi~dp-l~~w 235 (237)
T cd00892 202 FRKSCEVTL--RLLRSNKETLMSVLETFIHDP-LVEW 235 (237)
T ss_pred hHHHHHHHH--HHHHhCHHHHHHHHHHHhhcc-chhc
Confidence 789999999 999999999999999999875 5443
No 24
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=93.84 E-value=0.089 Score=38.34 Aligned_cols=33 Identities=6% Similarity=-0.118 Sum_probs=29.8
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCC
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPC 36 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPc 36 (91)
||..|+.++ .++|+|.+.|++++++|+.+. +=+
T Consensus 245 F~~~~~~~~--~~Lr~~~~~l~~~l~~f~~dp-l~~ 277 (280)
T cd05169 245 FRTTCEDVM--NVLRENKESLMAVLEAFVHDP-LLS 277 (280)
T ss_pred hHHHHHHHH--HHHhcChHHHHHHHHHHHhCc-ccc
Confidence 789999999 999999999999999999885 543
No 25
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=90.37 E-value=0.34 Score=35.47 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=28.0
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
|+..|..++ .++|+|.+.|++++++++.+.
T Consensus 244 f~~~~~~~~--~~Lr~~~~~l~~~l~~fv~dp 273 (279)
T cd05171 244 FRRCCEKTL--EVLRDNKDAILTILEVLLYDP 273 (279)
T ss_pred HHHHHHHHH--HHHHcChHHHHHHHHHHHhCc
Confidence 688999999 999999999999999999875
No 26
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=86.27 E-value=0.9 Score=32.56 Aligned_cols=30 Identities=7% Similarity=-0.045 Sum_probs=27.8
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
||..|++++ .++|+|.+.|++++++++...
T Consensus 200 f~~~~~~~~--~~Lr~~~~~l~~~l~~f~~dp 229 (235)
T cd05172 200 LRSCMVHTL--RALRNERHLLLSTMDVFVKEP 229 (235)
T ss_pred HHHHHHHHH--HHHHcCHHHHHHHHHHHhhCc
Confidence 788999999 999999999999999998774
No 27
>PLN02150 terpene synthase/cyclase family protein
Probab=81.82 E-value=2.5 Score=26.37 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.6
Q ss_pred hHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 42 ATVQ-NLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 42 ~~i~-~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
++|+ ++++. +.|++||.+++.++|+++-
T Consensus 8 SsIeCYMke~---g~seeeA~~~i~~li~~~W 36 (96)
T PLN02150 8 NGVNCYMKQH---GVTKEEAVSELKKMIRDNY 36 (96)
T ss_pred HHHHHHhccC---CCCHHHHHHHHHHHHHHHH
Confidence 4555 66775 8999999999999998763
No 28
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=80.16 E-value=2.5 Score=31.38 Aligned_cols=30 Identities=7% Similarity=-0.102 Sum_probs=27.7
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
|+..|...+ -++|+|.+.|++++++.+.+.
T Consensus 272 f~~~~~~~~--~~Lr~~~~~l~~~l~~fv~DP 301 (307)
T cd05170 272 FRLSCEQVL--HIMRRGRETLLTLLEAFVYDP 301 (307)
T ss_pred HHHHHHHHH--HHHHcCHHHHHHHHHHHhhCc
Confidence 688999999 999999999999999998875
No 29
>KOG0173|consensus
Probab=78.88 E-value=4 Score=30.12 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
.++.-|..|+++||++|||.+.+.+-|..-+
T Consensus 170 aAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 170 AAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred HHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 4678899999999999999998888777655
No 30
>KOG2001|consensus
Probab=73.76 E-value=14 Score=30.84 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=44.8
Q ss_pred CCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy9777 34 LPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQ 84 (91)
Q Consensus 34 lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ 84 (91)
.|..+| ..++..|.+|..-.+.|.+|.....++.+++-+.+.|-++-|.+
T Consensus 234 ~~~~~g-g~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~ 283 (734)
T KOG2001|consen 234 KKVCKG-GAVLSLLQSSIKENLGDRSARMLLKKLLRNASQPYCTMLEEWIY 283 (734)
T ss_pred ccccCc-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 777776 48899999999999999999999999999999999999988643
No 31
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=67.49 E-value=5.1 Score=28.14 Aligned_cols=19 Identities=16% Similarity=-0.010 Sum_probs=17.1
Q ss_pred HHHhhhHHHHHHHHHHhhc
Q psy9777 12 VHAALSLVKIINLRSWLEL 30 (91)
Q Consensus 12 lalRk~~~~il~lvelM~~ 30 (91)
.++|+|.+.|++++++|+.
T Consensus 200 ~~lr~~~~~i~~ll~~~~~ 218 (219)
T cd00142 200 LILRRHAGLLLNLLSLMLR 218 (219)
T ss_pred HHHHhChHHHHHHHHHhcc
Confidence 3799999999999999975
No 32
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=67.08 E-value=16 Score=25.42 Aligned_cols=31 Identities=13% Similarity=-0.011 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++++..++|.+||.+.+.+.+.++.+
T Consensus 168 a~~~Lek~~~~dms~eeai~l~~~~L~~~~~ 198 (212)
T cd03751 168 AKTELEKLKFSELTCREAVKEAAKIIYIVHD 198 (212)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHhh
Confidence 5567999999999999999999988887776
No 33
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=65.80 E-value=20 Score=19.62 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=26.5
Q ss_pred HHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 23 NLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 23 ~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
.+.++|..++ +--.+. ......+.++|..+++ +=..++..+|.+-+
T Consensus 8 ~i~~iL~~~d-l~~vT~-k~vr~~Le~~~~~dL~--~~K~~I~~~I~~~l 53 (54)
T PF08766_consen 8 AIREILREAD-LDTVTK-KQVREQLEERFGVDLS--SRKKFIKELIDEFL 53 (54)
T ss_dssp HHHHHHTTS--GGG--H-HHHHHHHHHH-SS--S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-HhHhhH-HHHHHHHHHHHCCCcH--HHHHHHHHHHHHHh
Confidence 4555666665 666654 3456789999999998 44566777776543
No 34
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=65.49 E-value=12 Score=22.41 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=28.8
Q ss_pred CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 36 CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 36 cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
||.| .+.|.-|-+.+..-.|.+||....+.|++..+
T Consensus 29 cF~G-~e~VdWL~~~~~~~~~r~eAv~lgq~Ll~~g~ 64 (83)
T cd04449 29 CFIG-SEAVSWLINNFEDVDTREEAVELGQELMNEGL 64 (83)
T ss_pred ceEh-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC
Confidence 6665 56788888887767789999999999998654
No 35
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=62.14 E-value=6 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.589 Sum_probs=26.0
Q ss_pred CCCcccchhHHHHHHHhcCCCCCHHHHHHH
Q psy9777 34 LPCFKSGAATVQNLKNRFHMNLTEEQLQVL 63 (91)
Q Consensus 34 lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~ 63 (91)
|.||..+..+++.+++-|..+.|..+++.|
T Consensus 16 LAcfdTPs~v~~aVk~eFgi~vsrQqve~y 45 (104)
T PF10045_consen 16 LACFDTPSEVAEAVKEEFGIDVSRQQVESY 45 (104)
T ss_pred HHhhCCHHHHHHHHHHHhCCccCHHHHHHc
Confidence 889987557889999999999998888765
No 36
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=61.93 E-value=22 Score=24.54 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++++.+++|.+||.+.+.+.+..+.+
T Consensus 170 ~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~ 200 (213)
T cd03753 170 AQSSLQEKYHKDMTLEEAEKLALSILKQVME 200 (213)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhc
Confidence 4557899999999999999999998887653
No 37
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=61.82 E-value=21 Score=20.49 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S 71 (91)
-||.| .+.+..|.+.+.. .+.+||.+....|++..
T Consensus 27 ~~F~G-~e~v~WL~~~~~~-~~r~ea~~~~~~ll~~g 61 (81)
T cd04371 27 NCFTG-SELVDWLLDNLEA-ITREEAVELGQALLKHG 61 (81)
T ss_pred ceeEc-HHHHHHHHHhCCC-CCHHHHHHHHHHHHHCC
Confidence 37876 5778888887755 88999999999988753
No 38
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=61.39 E-value=22 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.+++.+++|.+||.+.+.+.+..+..
T Consensus 135 ~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~ 165 (188)
T cd03761 135 AYGVLDSGYRYDLSVEEAYDLARRAIYHATH 165 (188)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999998887765
No 39
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=60.95 E-value=24 Score=24.35 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.++.++++|.+||.+.+.+.+.++.+
T Consensus 169 ~~~~Le~~y~~~ms~eea~~l~~~al~~~~~ 199 (213)
T cd03752 169 AQSLLKQDYKDDMTLEEALALAVKVLSKTMD 199 (213)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999999988875
No 40
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=58.90 E-value=24 Score=24.00 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|+++..+++|.+||.+.+.+.+..+..
T Consensus 140 ~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 170 (195)
T cd03759 140 LYGMCESLWRPDMEPDELFETISQALLSAVD 170 (195)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999998887765
No 41
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=58.69 E-value=18 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.030 Sum_probs=27.3
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
...|.+++++++|.+||.+.+.+-|..++.+
T Consensus 154 ~~~Lek~yk~~ms~eeai~la~~al~~a~~r 184 (236)
T cd03765 154 KPILDRVITPDTSLEDAAKCALVSMDSTMRS 184 (236)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999988763
No 42
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=56.48 E-value=32 Score=23.00 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++++.+++|.+||.+.+.+.+..+..
T Consensus 136 ~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~ 166 (185)
T TIGR03634 136 AYGVLEDEYREDMSVEEAKKLAVRAIKSAIE 166 (185)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999988877664
No 43
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=54.97 E-value=28 Score=20.96 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=27.1
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S 71 (91)
-||.| ...++-|.+... -.+.+||......+++..
T Consensus 27 ~~F~G-~~~v~WL~~~~~-~~~~~EA~~~~~~ll~~g 61 (88)
T cd04450 27 YAFTG-KAIVQWLMDCTD-VVDPSEALEIAALFVKYG 61 (88)
T ss_pred ceeEh-HHHHHHHHHCCC-CCCHHHHHHHHHHHHHCC
Confidence 47876 567788888765 378999999999888753
No 44
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=54.90 E-value=37 Score=23.28 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
....|+++.+++++.+||.+.+.+.+..+.+.
T Consensus 166 ~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~ 197 (209)
T cd01911 166 AKTFLEKRYKKDLTLEEAIKLALKALKEVLEE 197 (209)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHHhc
Confidence 45578999999999999999999988877764
No 45
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=54.05 E-value=31 Score=19.60 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=28.7
Q ss_pred CCcccchhHHHHHHHhcC-CCCCHHHHHHHHHHHHHHH
Q psy9777 35 PCFKSGAATVQNLKNRFH-MNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~-l~~s~~ea~~~v~~lI~~S 71 (91)
.||.| .+.|+.|.+-+. ...+.+||....+.|++.-
T Consensus 16 ~~F~G-~e~v~WL~~~~~~~~~~r~eA~~l~q~Ll~~g 52 (74)
T PF00610_consen 16 NCFTG-SEAVDWLMDNFEGFVRDREEAVQLGQELLDHG 52 (74)
T ss_dssp CEEEH-HHHHHHHHHTSCTSTSSHHHHHHHHHHHHHCT
T ss_pred CEeEh-HHHHHHHHHhccccccCHHHHHHHHHHHHHCC
Confidence 58876 577888887764 5789999999999998743
No 46
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=53.93 E-value=38 Score=18.96 Aligned_cols=40 Identities=8% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCCcccc--hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 34 LPCFKSG--AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 34 lPcf~~~--~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
+|-++.- -..|++.++=..-++|..||.+.|-+-|.+...
T Consensus 5 lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~~ 46 (51)
T PF03701_consen 5 LPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEHQ 46 (51)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 8888852 257888888888999999999999998887653
No 47
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=53.80 E-value=36 Score=23.39 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.+..++++|.+||.+.+.+-+.++.+
T Consensus 166 ~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~ 196 (207)
T cd03755 166 VREFLEKNYKEEMTRDDTIKLAIKALLEVVQ 196 (207)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence 4557899999999999999999998888775
No 48
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=53.26 E-value=38 Score=23.31 Aligned_cols=32 Identities=13% Similarity=0.195 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
....|+++.+++++.+||.+.+.+.+..+.+.
T Consensus 166 ~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~ 197 (211)
T cd03756 166 VTEFLEKEYKEDMSLEEAIELALKALYAALEE 197 (211)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc
Confidence 35678899999999999999999888876653
No 49
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=52.70 E-value=23 Score=16.10 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=20.5
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
.++.|| +-....++.+.++..|...|
T Consensus 5 ~li~~~---~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 5 TLIDGL---CKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHH---HHCCCHHHHHHHHHHHHHcC
Confidence 356677 66778888999999998877
No 50
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=52.38 E-value=42 Score=22.63 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+.+..+..
T Consensus 134 ~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~ 164 (189)
T cd03763 134 AMSVLEDRYKPDMTEEEAKKLVCEAIEAGIF 164 (189)
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999888876654
No 51
>cd08811 CARD_IPS1 Caspase activation and recruitment domain (CARD) found in IPS-1. Caspase activation and recruitment domain (CARD) found in IPS-1 (Interferon beta promoter stimulator protein 1), also known as CARDIF, VISA or MAVS. IPS-1 is an adaptor protein that plays an important role in interferon induction in response to viral infection. It is crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. The CARD of IPS-1 associates with the CARDs of two RNA helicases, RIG-I and MDA5, which bind viral DNA in the cytoplasm during the initial stage of intracellular antiviral response, leading to the induction of type I interferons. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homo
Probab=51.90 E-value=21 Score=22.03 Aligned_cols=38 Identities=11% Similarity=0.293 Sum_probs=24.1
Q ss_pred HHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcC
Q psy9777 12 VHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFH 52 (91)
Q Consensus 12 lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~ 52 (91)
..+|+++..+++ |..+--=.-|||++. .+=+.++....
T Consensus 6 k~I~~n~~~Fc~-i~v~eiLP~LpCLT~--~Dqe~i~a~~~ 43 (84)
T cd08811 6 KYIRRNMSRFCT-VDVVEILPYLPCLTA--SDQEEIRAKQD 43 (84)
T ss_pred HHHHHhhcccee-eeHHHhcCccccCch--hhHHHHcchhh
Confidence 678999999987 444433344999986 34344443333
No 52
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=50.62 E-value=49 Score=20.02 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=28.3
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
.||.| .+.|.-|-+++..-.+.+||..+...|++.
T Consensus 28 ~~F~G-sdlVdWL~~~~~~~~~R~eAv~~g~~Ll~~ 62 (84)
T cd04438 28 NSFIG-SDLVDWLLSHVEGLTDRREARKYASSLLKL 62 (84)
T ss_pred ccccc-hHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 46765 467888888887777889999999999875
No 53
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=50.43 E-value=17 Score=22.95 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.6
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy9777 51 FHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~ 70 (91)
+.|++|++|..+.|+.+|++
T Consensus 8 ylp~lt~~~i~~QI~yll~q 27 (99)
T cd03527 8 YLPPLTDEQIAKQIDYIISN 27 (99)
T ss_pred cCCCCCHHHHHHHHHHHHhC
Confidence 57899999999999999875
No 54
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=50.34 E-value=41 Score=19.20 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=26.1
Q ss_pred CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy9777 36 CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 36 cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S 71 (91)
||.+ .+.|+.|.+... -.+.+||....+.|++.-
T Consensus 20 ~F~G-~e~v~wL~~~~~-~~~r~eA~~l~~~ll~~g 53 (77)
T smart00049 20 CFTG-SELVDWLMDNLE-IIDREEAVHLGQLLLDEG 53 (77)
T ss_pred eeEc-HHHHHHHHHcCC-cCCHHHHHHHHHHHHHCC
Confidence 7876 567777877765 568899999999888753
No 55
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=50.13 E-value=44 Score=22.43 Aligned_cols=31 Identities=6% Similarity=0.146 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...-|++.+.+++|.+||.+.+.+.+..+..
T Consensus 135 ~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~ 165 (188)
T cd03762 135 IYGYVDANYKPGMTLEECIKFVKNALSLAMS 165 (188)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999998888775
No 56
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=49.55 E-value=49 Score=21.85 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....+++.+.+++|.+||.+.+.+.+..+..
T Consensus 146 ~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~ 176 (190)
T PF00227_consen 146 AQPILEKLYKPDLSLEEAIELALKALKEAID 176 (190)
T ss_dssp HHHHHHHHHTTTSSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Confidence 4557899999999999999999988887764
No 57
>TIGR03643 conserved hypothetical protein TIGR03643. This model describes an uncharacterized bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae El Tor N16961 has three identical copies.
Probab=49.07 E-value=21 Score=21.43 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHH-HHhhchhHHH
Q psy9777 53 MNLTEEQLQVLIDKLVD-SSIHSLSTKL 79 (91)
Q Consensus 53 l~~s~~ea~~~v~~lI~-~S~~~~~T~~ 79 (91)
.+++|.|+...|.+-+. .|+..|+-++
T Consensus 23 fGL~E~eVi~lMR~~lk~~Sfk~WRkRV 50 (72)
T TIGR03643 23 FGLSEKEVIKLMRQNLKPSSFKLWRKRV 50 (72)
T ss_pred HCCCHHHHHHHHHhhcChhHHHHHHHHH
Confidence 57899999999987554 8889998765
No 58
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=48.72 E-value=27 Score=15.67 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=17.9
Q ss_pred HHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 5 MFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 5 ~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
++.|| +-....++...+++-|...|
T Consensus 6 li~~~---~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 6 LISGY---CKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred HHHHH---HccchHHHHHHHHHHHhHCc
Confidence 45666 66677788888888887665
No 59
>PF13041 PPR_2: PPR repeat family
Probab=48.63 E-value=29 Score=17.99 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.2
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
.++.|| +-+...++-+.+++-|...|
T Consensus 8 ~li~~~---~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 8 TLISGY---CKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHH---HHCcCHHHHHHHHHHHHHcC
Confidence 356777 56778899999999999888
No 60
>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins. BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.
Probab=48.57 E-value=37 Score=21.23 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=27.1
Q ss_pred CcccchhHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHh
Q psy9777 36 CFKSGAATVQNLKNR------FHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 36 cf~~~~~~i~~l~~R------f~l~~s~~ea~~~v~~lI~~S~ 72 (91)
||.+ .++|.-|-+- |.++.|-.+|.+.++++++..+
T Consensus 29 CF~g-sEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~hV 70 (92)
T cd04447 29 CFTA-SEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNHV 70 (92)
T ss_pred ccch-HHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCC
Confidence 8887 5677766665 4778899999999888776543
No 61
>PRK05114 hypothetical protein; Provisional
Probab=48.51 E-value=52 Score=18.94 Aligned_cols=41 Identities=10% Similarity=0.261 Sum_probs=33.8
Q ss_pred CCCcccc--hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 34 LPCFKSG--AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 34 lPcf~~~--~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
+|-++.. -.+|++.++-..-++|..||.+.|-+-|.+....
T Consensus 5 lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 5 LPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred cccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 8888852 2578888888889999999999999999887643
No 62
>PRK10304 ferritin; Provisional
Probab=48.30 E-value=36 Score=23.00 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=30.6
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCccc---chhHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHh
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFKS---GAATVQNLKNRFHMNLT-EEQLQVLIDKLVDSSI 72 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~~---~~~~i~~l~~Rf~l~~s-~~ea~~~v~~lI~~S~ 72 (91)
.....+.-..+++-+.+-|..|.+.. ++.+-..+.+=|...+. |.++.+.+.++++-+.
T Consensus 47 s~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt~~i~~l~~~A~ 109 (165)
T PRK10304 47 AQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKINELAHAAM 109 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455666666554777763 12223344444444442 4566666666666544
No 63
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=48.14 E-value=31 Score=20.98 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=23.1
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S 71 (91)
-.+..+.+++ +++++++.+.++.|+++-
T Consensus 66 v~v~~I~~~l--~~~~~~v~~al~~L~~eG 93 (102)
T PF08784_consen 66 VHVDEIAQQL--GMSENEVRKALDFLSNEG 93 (102)
T ss_dssp EEHHHHHHHS--TS-HHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHh--CcCHHHHHHHHHHHHhCC
Confidence 4678888888 899999999999998863
No 64
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=47.77 E-value=34 Score=20.97 Aligned_cols=59 Identities=12% Similarity=0.085 Sum_probs=39.1
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHhh
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHM-------NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l-------~~s~~ea~~~v~~lI~~S~~ 73 (91)
-+...++++.|-.+..+++ .-.-.+...-+-.+..|+.- ++|.++|++....+|++-..
T Consensus 18 ~kP~~d~LLkLYAL~KQ~s-~GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYialVeeLka 83 (87)
T COG4281 18 EKPSNDELLKLYALFKQGS-VGDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALVEELKA 83 (87)
T ss_pred cCCCcHHHHHHHHHHHhcc-ccccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHHHHHHHh
Confidence 3567888999999988775 32222211123446666654 57999999988888886543
No 65
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=47.00 E-value=52 Score=22.95 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|+++..+++|.+||.+.+.+-+..+..
T Consensus 165 ~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~ 195 (227)
T cd03750 165 AKTFLEKRYNEDLELEDAIHTAILTLKEGFE 195 (227)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHhc
Confidence 5568999999999999999999887776653
No 66
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=45.66 E-value=54 Score=22.84 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++..++++|.+||.+.+.+-+..+.+
T Consensus 143 a~~~Le~~~~~~ms~eeai~l~~~al~~~~~ 173 (219)
T TIGR03690 143 AKGALKKLYSPDLDEDDALRVAVEALYDAAD 173 (219)
T ss_pred HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999998888776
No 67
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.63 E-value=58 Score=18.65 Aligned_cols=41 Identities=10% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCCCCCcccc--hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 31 SSQLPCFKSG--AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 31 ~~~lPcf~~~--~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
++ ||-++.- -.+|.+.++-.--++|..||...|.+-|.+-.
T Consensus 3 ~~-lp~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~h 45 (60)
T COG3140 3 AG-LPSLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRENH 45 (60)
T ss_pred Cc-cccccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHh
Confidence 44 8888751 25788888888889999999999988777544
No 68
>PRK03996 proteasome subunit alpha; Provisional
Probab=45.33 E-value=55 Score=23.03 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
....|.+++.+++|.+||.+.+.+-+..+.+.
T Consensus 174 ~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~ 205 (241)
T PRK03996 174 VMEFLEKNYKEDLSLEEAIELALKALAKANEG 205 (241)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc
Confidence 34578999999999999999999988887754
No 69
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=45.23 E-value=17 Score=23.43 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=29.0
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
|++++.|++.+|+--.-+-+|+++|--.-..|.++
T Consensus 42 L~lk~vf~lpLRq~~Gfv~Sl~~L~gl~l~vPdyS 76 (112)
T PF13737_consen 42 LTLKVVFGLPLRQTQGFVRSLFKLMGLDLPVPDYS 76 (112)
T ss_pred HHHHHHccCCcchhhHHHHHHHhhcCCCCCCCcee
Confidence 67888889999999999999999996664477776
No 70
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=45.11 E-value=34 Score=15.76 Aligned_cols=26 Identities=8% Similarity=-0.036 Sum_probs=20.0
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcCC
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELSS 32 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~~ 32 (91)
.++++| +-+...+....+++.|...|
T Consensus 6 ~ll~a~---~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 6 ALLRAC---AKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHH---HHCCCHHHHHHHHHHHHHhC
Confidence 345666 55788888999999998876
No 71
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=44.83 E-value=56 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+.+..+..
T Consensus 139 ~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~ 169 (193)
T cd03758 139 CLSILDRYYKPDMTVEEALELMKKCIKELKK 169 (193)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999988777776543
No 72
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=44.74 E-value=58 Score=23.08 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.+++.+++|.+||.+.+.+.+..+++
T Consensus 161 a~~~Lek~y~~~ms~eeai~la~~aL~~~~~ 191 (228)
T TIGR03691 161 IATALKESYRDGLSLADALGLAVQALRAGGN 191 (228)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999888754
No 73
>PF10985 DUF2805: Protein of unknown function (DUF2805); InterPro: IPR019882 This entry represents an uncharacterised bacterial protein family. Members average about 90 amino acids in length with several well-conserved uncommon amino acids (Trp, Met). The majority of species are marine bacteria. Few species have more than one copy, but Vibrio cholerae O1 biovar eltor str. N16961 has three identical copies.
Probab=43.26 E-value=29 Score=20.83 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHHH-HHhhchhHHH
Q psy9777 53 MNLTEEQLQVLIDKLVD-SSIHSLSTKL 79 (91)
Q Consensus 53 l~~s~~ea~~~v~~lI~-~S~~~~~T~~ 79 (91)
.+++|.|+.+.|.+-.. .|+..|+-++
T Consensus 22 fGl~E~eVi~lMR~~Lk~~sfk~WRkRv 49 (73)
T PF10985_consen 22 FGLSEKEVIKLMRKELKPSSFKLWRKRV 49 (73)
T ss_pred HCCCHHHHHHHHHhhcChhHHHHHHHHH
Confidence 57899999999987554 8889998765
No 74
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=43.17 E-value=38 Score=21.55 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=24.5
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcC
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELS 31 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~ 31 (91)
|++-|-+|+..||+.=.++.=+|+|..+
T Consensus 14 LF~IGl~Gv~~rrN~i~~LmSiElmlNA 41 (100)
T COG0713 14 LFTIGLYGLLTRRNLIVMLMSIELMLNA 41 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778999999999999999999876
No 75
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=43.12 E-value=51 Score=22.42 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
+...+.+|+.|..|.+|+.+-+.-|.+-
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~~ 68 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEKL 68 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 6788999999999999999998877753
No 76
>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=42.32 E-value=44 Score=20.25 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=27.6
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
-||.| .+.|..|-+... ..|-+||....+.|++..+
T Consensus 27 ~cF~G-selVdWL~~~~~-~~sR~eAv~lgq~Ll~~gv 62 (82)
T cd04442 27 NCFVG-KELIDWLIEHKE-ASDRETAIKIMQKLLDHSI 62 (82)
T ss_pred ceeEc-HHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCC
Confidence 47876 567787776644 4789999999999998654
No 77
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=42.28 E-value=63 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+++++|.+||.+.+.+.+..+..
T Consensus 174 ~~~~Le~~~k~dms~eEai~l~~kal~~~~~ 204 (247)
T PTZ00488 174 AYGVLDAGFKWDLNDEEAQDLGRRAIYHATF 204 (247)
T ss_pred HHHHHHhcCcCCCCHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999988887665
No 78
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=41.29 E-value=86 Score=20.51 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
....|+++..+++|.+||.+.+.+.+..+...
T Consensus 138 ~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~ 169 (182)
T cd01906 138 ALGILEKLYKPDMTLEEAIELALKALKSALER 169 (182)
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHHHHcc
Confidence 45578889999999999999998888776653
No 79
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=40.89 E-value=49 Score=22.02 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...-|++.+.+++|.+||.+.+.+-+..+..
T Consensus 136 ~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~ 166 (189)
T cd01912 136 AYGILDRGYKPDMTLEEAVELVKKAIDSAIE 166 (189)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999988887776554
No 80
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=40.86 E-value=26 Score=24.79 Aligned_cols=18 Identities=6% Similarity=-0.149 Sum_probs=16.3
Q ss_pred HHhhhHHHHHHHHHHhhc
Q psy9777 13 HAALSLVKIINLRSWLEL 30 (91)
Q Consensus 13 alRk~~~~il~lvelM~~ 30 (91)
++|+|.+.|++++++++.
T Consensus 204 ~Lr~~~~~l~s~l~~fv~ 221 (222)
T cd05164 204 VFRKHRDTLIAFLEVFVY 221 (222)
T ss_pred HHHhCHHHHHHHHHHHhc
Confidence 799999999999999864
No 81
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=40.12 E-value=48 Score=22.99 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...|+++.+++++.+||.+.+.+.+..+.+
T Consensus 168 ~~~L~~~~~~~~~~eeai~l~~~al~~~~~ 197 (224)
T TIGR03633 168 TEFLEKEYREDLSLDEAIELALKALYSAVE 197 (224)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHhc
Confidence 457888999999999999999988887665
No 82
>CHL00130 rbcS ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit; Reviewed
Probab=39.95 E-value=33 Score=23.06 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=17.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHH
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
.|.|+|||+|..+.|+-+|++
T Consensus 9 SyLPpLTdeqI~kQI~Y~i~~ 29 (138)
T CHL00130 9 SFLPDLTDQQIEKQIQYAISK 29 (138)
T ss_pred ccCCCCCHHHHHHHHHHHHhc
Confidence 367899999999999988875
No 83
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=39.53 E-value=95 Score=22.65 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=41.6
Q ss_pred hcCCCCCCcccchhHHHHHHHhcCCCC---CHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhcCC
Q psy9777 29 ELSSQLPCFKSGAATVQNLKNRFHMNL---TEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNGIL 91 (91)
Q Consensus 29 ~~~~~lPcf~~~~~~i~~l~~Rf~l~~---s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~~tnGI~ 91 (91)
+.+| +|.+......+..+=+.-..+. +.+|+++.+.++-++.++..+.+....-+.+-+|.+
T Consensus 257 mA~G-~PVI~~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g~~ 321 (333)
T PRK09814 257 LAAG-LPVIVWSKAAIADFIVENGLGFVVDSLEELPEIIDNITEEEYQEMVENVKKISKLLRNGYF 321 (333)
T ss_pred HHCC-CCEEECCCccHHHHHHhCCceEEeCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcchh
Confidence 5566 9999863334444433333322 567888888887777778888888888888888853
No 84
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=39.04 E-value=89 Score=21.60 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=34.8
Q ss_pred HHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhH--HHHHHHHHHHhc
Q psy9777 13 HAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLST--KLYDGFQYYTNG 89 (91)
Q Consensus 13 alRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T--~~YD~fQ~~tnG 89 (91)
++|++.-++=.|=+++...+ +|-=. ..-..+.+|....+++. |.||++- +-||+|..+++|
T Consensus 106 tvrEYVVRLRRLd~lL~~~n-~p~~~---~~~~~~~~~~~~~Lp~~------------~~nNyriALRKY~qyl~wq~~ 168 (168)
T TIGR03823 106 TVREYVVRLRRLDELLVAQN-YPAEQ---FQDGFLQERLADWLPST------------ATNNYRIALRKYDQYLRWQCT 168 (168)
T ss_pred cHHHHHHHHHHHHHHHhhcc-CCHHH---hccchHHHHHHhhCchh------------hhhHHHHHHHHHHHHHHhhcC
Confidence 45666666666666666665 54211 12234555555555544 4455444 459999988775
No 85
>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins. PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.
Probab=38.36 E-value=88 Score=18.66 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=26.4
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
-||.| .+.|.-|-+. ..-.|-+||....+.|++.-+
T Consensus 27 ~cF~G-selVdWL~~~-~~~~~R~eAv~~gq~Ll~~g~ 62 (81)
T cd04448 27 NCILG-KELVNWLIRQ-GKAATRVQAIAIGQALLDAGW 62 (81)
T ss_pred cccCh-HHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCC
Confidence 37766 4677777766 345788899999999987543
No 86
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=38.20 E-value=29 Score=20.98 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHH
Q psy9777 31 SSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 65 (91)
Q Consensus 31 ~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~ 65 (91)
+| =||++|..=.|..+=+.+..+.|++|.....-
T Consensus 21 gG-kP~I~GtRI~V~~Il~~l~~G~s~eeil~dyp 54 (79)
T COG2442 21 GG-KPCIRGTRIPVWDILEMLAAGESIEEILADYP 54 (79)
T ss_pred CC-cceEeCceecHHHHHHHHHCCCCHHHHHHhCC
Confidence 56 89999843356677777778999988876654
No 87
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=38.19 E-value=19 Score=19.37 Aligned_cols=16 Identities=31% Similarity=0.713 Sum_probs=11.4
Q ss_pred HHHHHHhhchhHHHHHHHHHH
Q psy9777 66 KLVDSSIHSLSTKLYDGFQYY 86 (91)
Q Consensus 66 ~lI~~S~~~~~T~~YD~fQ~~ 86 (91)
+-|++|++ +||.|-|+
T Consensus 28 ~ninksid-----q~dk~~y~ 43 (46)
T PF08181_consen 28 RNINKSID-----QYDKYTYM 43 (46)
T ss_pred HHHHHhHH-----HHhchhhh
Confidence 34677776 78988774
No 88
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=37.67 E-value=83 Score=21.33 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHHHhcCC--CCCHHHHHHHHHHHHHHHhh
Q psy9777 44 VQNLKNRFHM--NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 44 i~~l~~Rf~l--~~s~~ea~~~v~~lI~~S~~ 73 (91)
...|.+.+++ ++|.+||.+.+.+.+..+..
T Consensus 142 ~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~ 173 (197)
T cd03760 142 LPLLREAWEKKPDLTEEEARALIEECMKVLYY 173 (197)
T ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4468888898 99999999999888876654
No 89
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus
Probab=37.45 E-value=42 Score=18.71 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhchhHH
Q psy9777 59 QLQVLIDKLVDSSIHSLSTK 78 (91)
Q Consensus 59 ea~~~v~~lI~~S~~~~~T~ 78 (91)
-+.+++.+++++++..++.+
T Consensus 31 aaQKFisdI~~dA~q~~k~r 50 (51)
T PF03540_consen 31 AAQKFISDIANDAMQYCKIR 50 (51)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45678888888888776654
No 90
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=37.34 E-value=93 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFH--MNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~--l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.++++ +++|++||.+...+.+..++.
T Consensus 163 a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~ 195 (211)
T cd03749 163 ARTYLERHFEEFEDCSLEELIKHALRALRETLP 195 (211)
T ss_pred HHHHHHHhhccccCCCHHHHHHHHHHHHHHHhc
Confidence 4456788887 699999999999998888775
No 91
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=37.12 E-value=55 Score=20.00 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.5
Q ss_pred CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 36 CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 36 cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
||.| .+.|..|-+.. .-.|-+||....+.|.++.+
T Consensus 32 cF~G-sElVdWL~~~~-~~~sR~eAv~lgq~Ll~~gi 66 (85)
T cd04441 32 TFVG-SEFIDWLLQEG-EAESRREAVQLCRRLLEHGI 66 (85)
T ss_pred EeEc-hHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCC
Confidence 7765 57788888876 45689999999999988654
No 92
>PF11563 Protoglobin: Protoglobin; PDB: 2VEE_G 3QZZ_A 3R0G_A 3QZX_A 2VEB_A 1OR6_A 1OR4_B 2W31_B.
Probab=35.84 E-value=73 Score=20.37 Aligned_cols=44 Identities=7% Similarity=0.165 Sum_probs=34.6
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQY 85 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~ 85 (91)
..+.++++-+.++-.|.++.+.+..++......+.-..||....
T Consensus 3 ~~~~~~~~~~~l~~~d~~~L~~~~~~~~~~~~~iv~~FY~~l~~ 46 (158)
T PF11563_consen 3 ERLEERLEFLGLTEEDLELLRSLAPIIEPHAPEIVDDFYDHLLR 46 (158)
T ss_dssp HHHHHHHHHTT-SHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56777778777777777888888899998888888888988653
No 93
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=35.59 E-value=53 Score=21.90 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=27.1
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHhhchh
Q psy9777 45 QNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLS 76 (91)
Q Consensus 45 ~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~ 76 (91)
.+.|-|+.+.++++++++....++...++...
T Consensus 10 ~~~KtRL~~~l~~~~~~~l~~~ll~~~l~~l~ 41 (195)
T TIGR03552 10 ANAKSRLSPVLSPEEREELALAMLRDVITALR 41 (195)
T ss_pred CcccccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999988876544
No 94
>PF08230 Cpl-7: Cpl-7 lysozyme C-terminal domain; InterPro: IPR013168 This domain was originally found in the C-terminal moiety of the Cp-7 lysin (lysozyme, P19385 from SWISSPROT) encoded by Bacteriophage Cp-7. It is assumed that this domain represents a cell wall binding motif although no direct evidence has been obtained so far to support this.
Probab=35.41 E-value=25 Score=18.89 Aligned_cols=12 Identities=42% Similarity=0.600 Sum_probs=10.0
Q ss_pred HHHHHHHHhcCC
Q psy9777 80 YDGFQYYTNGIL 91 (91)
Q Consensus 80 YD~fQ~~tnGI~ 91 (91)
||..|...|.|+
T Consensus 30 Y~~VQ~~VN~~l 41 (42)
T PF08230_consen 30 YDAVQARVNELL 41 (42)
T ss_pred HHHHHHHHHHHc
Confidence 888999888774
No 95
>PF13708 Methyltransf_27: Methyltransferase domain
Probab=35.37 E-value=1.5e+02 Score=20.52 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=33.1
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q psy9777 46 NLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTN 88 (91)
Q Consensus 46 ~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~~tn 88 (91)
.+++-=.|+.|++.+...+..|+...-+-.-..+.|.|+.+..
T Consensus 35 ~l~~~~~p~ft~~NI~~t~~~l~~~r~~~~~~~v~~vF~~Ls~ 77 (194)
T PF13708_consen 35 QLEEDDPPEFTEENIYSTFEQLHANRGEIFERGVIDVFRSLSW 77 (194)
T ss_pred HHhcCCCCCccHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhch
Confidence 4444455788899999999999888888788888888887643
No 96
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=34.89 E-value=41 Score=23.48 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=18.3
Q ss_pred hcCCCCCHHHHHHHHHHHHHH
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
.+.|++|++|..+.|+-+|++
T Consensus 71 SYLPpLtdeqI~kQVeYli~~ 91 (176)
T PLN02289 71 SYLPDLTDEELAKEVDYLLRN 91 (176)
T ss_pred ecCCCCCHHHHHHHHHHHHhC
Confidence 457899999999999999875
No 97
>PF07860 CCD: WisP family C-Terminal Region; InterPro: IPR012421 This entry represents the C-terminal domain found in the Tropheryma whipplei WisP family of proteins [].
Probab=34.25 E-value=96 Score=20.14 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q psy9777 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTN 88 (91)
Q Consensus 55 ~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~~tn 88 (91)
.|.+|-.+.|..-|+.--.+..|.+-|-|-|+|.
T Consensus 99 ksvneqiktvtgavnnfqksvltslkdfftyltd 132 (141)
T PF07860_consen 99 KSVNEQIKTVTGAVNNFQKSVLTSLKDFFTYLTD 132 (141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4677777888888887778888999999998874
No 98
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=33.98 E-value=1.3e+02 Score=20.85 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=35.8
Q ss_pred HHHHHhc-----CCCCCHHHHHHHHHHHHHHHh----hchhHHHHHHHHHHHhcCC
Q psy9777 45 QNLKNRF-----HMNLTEEQLQVLIDKLVDSSI----HSLSTKLYDGFQYYTNGIL 91 (91)
Q Consensus 45 ~~l~~Rf-----~l~~s~~ea~~~v~~lI~~S~----~~~~T~~YD~fQ~~tnGI~ 91 (91)
..++.|+ .+.++++|..+++......+- ..+.....+.....+.|++
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p 232 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP 232 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc
Confidence 3466664 356799999999998887653 2577788999999999875
No 99
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=33.62 E-value=95 Score=21.42 Aligned_cols=30 Identities=20% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHhcC---------CCCCHHHHHHHHHHHHHHHhh
Q psy9777 44 VQNLKNRFH---------MNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 44 i~~l~~Rf~---------l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...|++.+. +++|.+||.+.+.+.+..+..
T Consensus 145 ~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~ 183 (212)
T cd03757 145 QPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDAFTSAAE 183 (212)
T ss_pred HHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345677664 899999999999888877664
No 100
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=33.52 E-value=67 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHH
Q psy9777 60 LQVLIDKLVDSSIHSLSTKLYDGFQYY 86 (91)
Q Consensus 60 a~~~v~~lI~~S~~~~~T~~YD~fQ~~ 86 (91)
+..++...|....|+|....||.+|..
T Consensus 95 f~tyF~vqvsvain~wy~pf~d~~q~a 121 (405)
T COG1133 95 FVTYFLVQVSVAVNAWYGPFYDLIQNA 121 (405)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456777889999999999999999974
No 101
>PRK14288 chaperone protein DnaJ; Provisional
Probab=33.40 E-value=1e+02 Score=23.39 Aligned_cols=39 Identities=18% Similarity=0.367 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCCH--HHHHHHHHHHHHHHhhc----hhHHHHHHH
Q psy9777 44 VQNLKNRFHMNLTE--EQLQVLIDKLVDSSIHS----LSTKLYDGF 83 (91)
Q Consensus 44 i~~l~~Rf~l~~s~--~ea~~~v~~lI~~S~~~----~~T~~YD~f 83 (91)
-.+|-.+.+||.+. .+|++.+ +.|+++++- -.-++||.|
T Consensus 24 yrkla~k~HPD~~~~~~~a~~~f-~~i~~AYevLsd~~kR~~YD~~ 68 (369)
T PRK14288 24 YRKLALKYHPDRNAGDKEAEEKF-KLINEAYGVLSDEKKRALYDRY 68 (369)
T ss_pred HHHHHHHHCCCCCCCccHHHHHH-HHHHHHHHHhccHHHHHHHHHh
Confidence 34577789999964 5566555 568888843 335689986
No 102
>PTZ00246 proteasome subunit alpha; Provisional
Probab=32.91 E-value=1.2e+02 Score=21.45 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.+...+++|.+||.+.+.+-+..+..
T Consensus 171 ~~~~Le~~~~~~ms~eeai~l~~~al~~~~~ 201 (253)
T PTZ00246 171 AQSILKQEWKEDLTLEQGLLLAAKVLTKSMD 201 (253)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 3457888999999999999999888777664
No 103
>PRK09772 transcriptional antiterminator BglG; Provisional
Probab=32.61 E-value=1.3e+02 Score=21.61 Aligned_cols=33 Identities=12% Similarity=0.339 Sum_probs=27.2
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
..+..++++|...+|++|+.-....++....++
T Consensus 136 ~~~~~i~~~~~i~lp~~E~~yIalhi~~a~~~~ 168 (278)
T PRK09772 136 EALTIIDKRLGVQLPKDEVGFIAMHLVSAQMSG 168 (278)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccc
Confidence 467789999999999999998888888775443
No 104
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=32.29 E-value=1.4e+02 Score=26.06 Aligned_cols=50 Identities=28% Similarity=0.427 Sum_probs=33.9
Q ss_pred HHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHH
Q psy9777 2 RQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLI 64 (91)
Q Consensus 2 r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v 64 (91)
|-+.+.|+ +.+-.+.|+++.++. .+. ....+...|.++|. +|+.||..-+
T Consensus 387 r~~i~eGl--~~a~~~id~vi~~ir---~s~------~~~~a~~~l~~~f~--~s~~qa~aIl 436 (957)
T PRK13979 387 RFHIVEGF--IKAIGIMDEIIKTIR---SSK------SKKDASENLIEKFG--FTDEQAEAIL 436 (957)
T ss_pred HHHHHHHH--HHHHHhHHHHHHHHH---cCC------CHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 45678899 888899999988843 221 12356778888875 6677665443
No 105
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=32.16 E-value=84 Score=21.02 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=24.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...|++.+.++++.+||.+.+.+.+.....
T Consensus 136 ~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~ 165 (188)
T cd03764 136 YGVLEDEYKEDMTVEEAKKLAIRAIKSAIE 165 (188)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 346778889999999999998887776554
No 106
>PF03945 Endotoxin_N: delta endotoxin, N-terminal domain; InterPro: IPR005639 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain (IPR005638 from INTERPRO) that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved N-terminal domain.; GO: 0009405 pathogenesis; PDB: 3EB7_A 1I5P_A 2C9K_A 1CIY_A 1JI6_A 1DLC_A 1W99_A.
Probab=32.05 E-value=1.7e+02 Score=20.03 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=31.9
Q ss_pred HHHHHHHhhcC-CCCCCcccchhHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHhh
Q psy9777 21 IINLRSWLELS-SQLPCFKSGAATVQNLKNRFHMNLTE---EQLQVLIDKLVDSSIH 73 (91)
Q Consensus 21 il~lvelM~~~-~~lPcf~~~~~~i~~l~~Rf~l~~s~---~ea~~~v~~lI~~S~~ 73 (91)
.+.++..++.. | .|....-...+..+-.-+.|+-++ ++..+.++++|++.+.
T Consensus 4 ~~~i~~~il~~~~-~p~~g~v~~~~s~l~~~lwp~~~~~~~~~~~~~ve~lI~~~I~ 59 (226)
T PF03945_consen 4 GLTIVGTILGAIG-VPVIGAVLGILSTLIGILWPSSSPDIWEEIIKQVENLIDQKIT 59 (226)
T ss_dssp HHHHHHHHHHHTT-SCTHHHHHHHHHHHHHHCSSTGSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 45666666665 4 565432113445677778877764 5666778888887663
No 107
>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins. DEPDC4 is a DEP domain containing protein of unknown function.
Probab=31.97 E-value=1e+02 Score=19.25 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=26.1
Q ss_pred CCcccchhHHHHHH----Hh--cCC-CCCHHHHHHHHHHHHHHHh
Q psy9777 35 PCFKSGAATVQNLK----NR--FHM-NLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 35 Pcf~~~~~~i~~l~----~R--f~l-~~s~~ea~~~v~~lI~~S~ 72 (91)
-||.| .+.|+-|- +- |.+ +.|-+||.+..+.|++.-+
T Consensus 26 ~CF~G-sEaVDwL~~~l~~n~~f~~~~~tR~~Av~l~q~Ll~~gv 69 (95)
T cd04446 26 DCFLG-SEAVDVVLAHLMQNKYFGDVDVPRAKAVRLCQALMDCRV 69 (95)
T ss_pred cccch-HHHHHHHHHHHhhccccCcccCCHHHHHHHHHHHHHcCC
Confidence 48987 46676433 33 444 6699999999999988643
No 108
>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins. Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=30.81 E-value=1.2e+02 Score=19.49 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=30.0
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh-hchhHH
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTK 78 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~-~~~~T~ 78 (91)
-||.| .+.|..|-+.+.. .+-+||....+.|++.-+ ....++
T Consensus 30 ~CF~G-se~VDWLv~~~~~-i~R~EAv~l~q~Lmd~gli~hV~~~ 72 (109)
T cd04444 30 KTFLG-SALVDWLISNSFA-ASRLEAVTLASMLMEENFLRPVGVR 72 (109)
T ss_pred ccccc-hHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCchhhHHHH
Confidence 48887 5778888887654 499999999999888432 444433
No 109
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=30.72 E-value=68 Score=20.67 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9777 54 NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~S~~ 73 (91)
++|.+||.++++.|+..+-.
T Consensus 38 eln~eEak~~vddl~~q~k~ 57 (108)
T COG3937 38 ELNAEEAKRFVDDLLRQAKE 57 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 67999999999999987763
No 110
>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins. GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.
Probab=30.65 E-value=99 Score=18.64 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=26.4
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
-||.| .+.|..|-+. ..-.|-+||......|++..+
T Consensus 29 ~cF~G-selVdWL~~~-~~~~sR~eAv~lg~~Ll~~G~ 64 (83)
T cd04443 29 GVFCG-CDLVSWLIEV-GLAQDRGEAVLYGRRLLQGGV 64 (83)
T ss_pred ccccH-HHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCC
Confidence 47876 5667777763 445688999999999988643
No 111
>PF14144 DOG1: Seed dormancy control
Probab=30.56 E-value=1.3e+02 Score=18.07 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCC-CHHHHHHHHHHHHHHHh
Q psy9777 44 VQNLKNRFHMNL-TEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 44 i~~l~~Rf~l~~-s~~ea~~~v~~lI~~S~ 72 (91)
+..||..+.... +|.+....|++.+.---
T Consensus 3 l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~ 32 (80)
T PF14144_consen 3 LNELRAALQSHADSDDELRSLVDKVMSHYD 32 (80)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 456788888777 89998888777766443
No 112
>PRK05231 homoserine kinase; Provisional
Probab=30.37 E-value=1e+02 Score=22.05 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy9777 54 NLTEEQLQVLIDKLVDSSIHSLSTKLYDGF 83 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~S~~~~~T~~YD~f 83 (91)
.+|++|......=+-..++.-|.+++||+.
T Consensus 256 ~Ls~~E~~~l~~~l~~~alrf~l~r~~~~~ 285 (319)
T PRK05231 256 PLTAAERAALPVMLRGAALRFWLSRLYDWL 285 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477777665444444688899999999975
No 113
>KOG0174|consensus
Probab=30.24 E-value=75 Score=22.84 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.0
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 46 NLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 46 ~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
.+..-++++|+.||+.+++.+-|.-++.
T Consensus 157 f~D~~~r~nMt~EE~~~fvk~Av~lAi~ 184 (224)
T KOG0174|consen 157 FCDANWRPNMTLEECVRFVKNAVSLAIE 184 (224)
T ss_pred eehhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 5777899999999999999998876653
No 114
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=29.19 E-value=1.4e+02 Score=22.26 Aligned_cols=46 Identities=15% Similarity=0.380 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhcCC-CCC--CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 19 VKIINLRSWLELSS-QLP--CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 19 ~~il~lvelM~~~~-~lP--cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
.+++.|+..+..+| .+| |++. ..||.++-.|+...+....+..+++
T Consensus 54 ~er~~l~~ai~etgv~ipSmClSa--------HRRfPfGS~D~~~r~~aleiM~KaI 102 (287)
T COG3623 54 EERLALVNAIQETGVRIPSMCLSA--------HRRFPFGSKDEATRQQALEIMEKAI 102 (287)
T ss_pred HHHHHHHHHHHHhCCCccchhhhh--------hccCCCCCCCHHHHHHHHHHHHHHH
Confidence 56889999999887 122 5544 7799988766555554444444443
No 115
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=29.13 E-value=94 Score=18.53 Aligned_cols=37 Identities=8% Similarity=0.052 Sum_probs=25.0
Q ss_pred HHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHH
Q psy9777 24 LRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 65 (91)
Q Consensus 24 lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~ 65 (91)
.+.+|..-+.=|++ .+..+.+.+.+++|++.+.+.+.
T Consensus 2 ~flLma~~~~~~~I-----pL~~v~~~yf~~lt~~~a~rk~~ 38 (76)
T PF11112_consen 2 TFLLMAQYFGDPVI-----PLEEVCEDYFPHLTPKTAKRKAN 38 (76)
T ss_pred HHHHHHHHcCCCCC-----cHHHHHHHHHccCCHHHHHHHHH
Confidence 35666555225555 35678888888889888877665
No 116
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=28.95 E-value=56 Score=20.56 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=15.1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHh
Q psy9777 51 FHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~S~ 72 (91)
+.|++|++|..+.|..+++.-.
T Consensus 7 ~lP~l~~~~i~~Qv~~ll~qG~ 28 (99)
T PF00101_consen 7 YLPPLTDEEIAKQVRYLLSQGW 28 (99)
T ss_dssp TSS---HHHHHHHHHHHHHTT-
T ss_pred cCCCCCHHHHHHHHHhhhhcCc
Confidence 5688999999999999987643
No 117
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=28.80 E-value=1.3e+02 Score=17.86 Aligned_cols=9 Identities=22% Similarity=0.205 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q psy9777 77 TKLYDGFQY 85 (91)
Q Consensus 77 T~~YD~fQ~ 85 (91)
+...|.+|.
T Consensus 30 ~~~~d~iQ~ 38 (105)
T cd03163 30 SRAVDYLQR 38 (105)
T ss_pred HHHHHHHHH
Confidence 444555553
No 118
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=1.6e+02 Score=20.87 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=27.5
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
.....|.++..++++.+||.+.+.+-+.++..
T Consensus 166 ~a~~~Le~~y~~~m~~eeai~la~~al~~a~~ 197 (236)
T COG0638 166 FAYGFLEKEYREDLSLEEAIELAVKALRAAIE 197 (236)
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Confidence 45668999999999999999999888887775
No 119
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=28.38 E-value=83 Score=18.96 Aligned_cols=58 Identities=12% Similarity=0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCCCCCcccch---hHHHHHH--H-hcCCCCCHHHHHHHHHHHHHHHhhch
Q psy9777 18 LVKIINLRSWLELSSQLPCFKSGA---ATVQNLK--N-RFHMNLTEEQLQVLIDKLVDSSIHSL 75 (91)
Q Consensus 18 ~~~il~lvelM~~~~~lPcf~~~~---~~i~~l~--~-Rf~l~~s~~ea~~~v~~lI~~S~~~~ 75 (91)
-+..+.|..+-.+...=||-...| ..+.+.| . +=.-++|.+||.+...+++++-+.+|
T Consensus 21 ~~~~L~lYalyKQAt~G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~~~~ 84 (85)
T cd00435 21 NEEKLQLYSLYKQATVGDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELIAKY 84 (85)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 345556666665553235543222 1122211 1 22347899999999999999887766
No 120
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.28 E-value=1.2e+02 Score=19.01 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=22.7
Q ss_pred hHHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhhch
Q psy9777 42 ATVQNLKNRF---HMNLTEEQLQVLIDKLVDSSIHSL 75 (91)
Q Consensus 42 ~~i~~l~~Rf---~l~~s~~ea~~~v~~lI~~S~~~~ 75 (91)
..++.+++++ .++.||++....++.-+.+=-++|
T Consensus 72 ~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m~~~~ 108 (108)
T PF09682_consen 72 EAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEMNDEW 108 (108)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 3566777765 458999997776666665554544
No 121
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=27.93 E-value=63 Score=20.27 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=22.9
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHHhhchh
Q psy9777 49 NRFHMNLTEEQLQVLIDKLVDSSIHSLS 76 (91)
Q Consensus 49 ~Rf~l~~s~~ea~~~v~~lI~~S~~~~~ 76 (91)
+.+..+++.+.|+..+..++..-+.+|.
T Consensus 69 g~L~~~ld~~~AA~~l~a~~~Gl~~~WL 96 (121)
T PF08361_consen 69 GQLPADLDPRLAAIMLHALLSGLIQNWL 96 (121)
T ss_dssp TSS-TTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998885
No 122
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=27.93 E-value=68 Score=19.07 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.3
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhch
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDSSIHSL 75 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~S~~~~ 75 (91)
+-.-++|.+||.+...++|++-+.+|
T Consensus 61 ~~l~gms~~eA~~~Yi~~v~~~~~~~ 86 (87)
T PF00887_consen 61 KALKGMSKEEAMREYIELVEELIPKY 86 (87)
T ss_dssp HTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 33468899999999999999887765
No 123
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=27.87 E-value=32 Score=19.00 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=20.2
Q ss_pred CCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHH
Q psy9777 31 SSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 65 (91)
Q Consensus 31 ~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~ 65 (91)
+| -|||++..=.+..+-+++.-+.|.+|..+..-
T Consensus 9 ~G-~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp 42 (56)
T PF04255_consen 9 GG-QPVIRGTRIPVRDILDLLAAGESPEEIAEDYP 42 (56)
T ss_dssp GG---EETTSS-BHHHHHHHHHTT--HHHHHHHST
T ss_pred CC-cceEcCceecHHHHHHHHHcCCCHHHHHHHCC
Confidence 45 79998733357777778878888888766544
No 124
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=27.83 E-value=2.4e+02 Score=20.37 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=45.6
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcccch---hHHHHHHHhcCCCCCHHHHHHHHHHHHH--HHhhchhHHHHHHHHHHH
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFKSGA---ATVQNLKNRFHMNLTEEQLQVLIDKLVD--SSIHSLSTKLYDGFQYYT 87 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~~~~---~~i~~l~~Rf~l~~s~~ea~~~v~~lI~--~S~~~~~T~~YD~fQ~~t 87 (91)
.+---++++-++..|.++| ..+..... ..+..|..-+ +..+|.+...-+.+... .-+.+..+.++|..|...
T Consensus 14 ~e~~L~Kl~K~~kam~~SG-~~yv~n~~~f~~~l~~Lg~~~-~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v 90 (215)
T cd07641 14 DRTALQKVKKSVKAIYNSG-QDHVQNEENYAQALDKFGSNF-LSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNV 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh-ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999 66665421 3455555554 22334455555554333 556778888888888654
No 125
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=27.78 E-value=2.1e+02 Score=19.81 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhH--HHHHHHHHHHhc
Q psy9777 13 HAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLST--KLYDGFQYYTNG 89 (91)
Q Consensus 13 alRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T--~~YD~fQ~~tnG 89 (91)
++|++.-++=.|=+++...+ +|-=. .+-..+.+|....+++. |.||++- +-||+|..+++.
T Consensus 106 TvrEYVVRLRRLd~lL~~~n-~p~~~---~~~~~~~~~~~~~Lp~~------------~~nNyriALRKY~qyl~wq~~ 168 (169)
T PRK11582 106 TVREYVVRLRRLDEHLHEQN-IPLDL---LQDGFLDERLAPWLPDT------------STNNYRIALRKYQQYLAWQQT 168 (169)
T ss_pred cHHHHHHHHHHHHHHHhhcc-CCHHH---hcchhHHHHHHhhcchh------------hhhHHHHHHHHHHHHHHHhhc
Confidence 45666666666666666665 54221 12234556665555544 4455444 459999888764
No 126
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=27.63 E-value=86 Score=17.18 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 32 SQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 32 ~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
+.+|--..........+++|.-+.++.+. ..+.+++......
T Consensus 15 ~~~~~~~~r~~~~~~ir~~Fr~~~~~td~-~~i~~~l~~~~~~ 56 (61)
T PF13232_consen 15 SKFPDYNFRSYFRRRIRDRFRRNKNVTDP-EKIAKLLKEGRKE 56 (61)
T ss_pred hhcCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHH
Confidence 33553332224677899999987753322 2455555555443
No 127
>COG3941 Mu-like prophage protein [General function prediction only]
Probab=27.61 E-value=3.3e+02 Score=22.74 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccch-hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGA-ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDG 82 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~-~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~ 82 (91)
++-.|+| ..|.+...+++..+.-+..++.+-.|..+. .++..+.+--+ ++++.+..++. ..+...||.
T Consensus 264 vm~sGaf-~~Lk~~lrdf~~~lns~~~~g~~~s~~~s~~~al~~~~e~aq------~~Ak~vk~v~q----~l~~v~sda 332 (633)
T COG3941 264 VMKSGAF-DELKKRLRDFLSWLNSAKADGALDSLRASVGTALQGLLESAQ------RAAKRVKGVLQ----ELWKVSSDA 332 (633)
T ss_pred HHhcCcH-HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH----HHHHHHHHH
Confidence 3445666 899999999999999999998777776521 24444443222 55555554443 334445566
Q ss_pred HHHHHhcC
Q psy9777 83 FQYYTNGI 90 (91)
Q Consensus 83 fQ~~tnGI 90 (91)
+-....||
T Consensus 333 ~era~~Gi 340 (633)
T COG3941 333 WERAGTGI 340 (633)
T ss_pred HHHHHHHH
Confidence 65555554
No 128
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=27.44 E-value=1.4e+02 Score=17.81 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=20.8
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHH
Q psy9777 41 AATVQNLKNRFHMNLTEEQLQVLIDK 66 (91)
Q Consensus 41 ~~~i~~l~~Rf~l~~s~~ea~~~v~~ 66 (91)
+..++.+-+--+++++++|+.++..+
T Consensus 5 ~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 5 REEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 36888999999999999997766543
No 129
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=26.86 E-value=1e+02 Score=19.11 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=19.9
Q ss_pred hcCCCCCHHHHHHHHHHHHHHHhhchh
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDSSIHSLS 76 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~S~~~~~ 76 (91)
=|+.+++.+.++..+...|+..+-.|.
T Consensus 85 efr~d~d~~~~~~~i~G~i~~~v~~w~ 111 (133)
T PF08359_consen 85 EFRKDLDPELAARFIFGMINHTVLDWV 111 (133)
T ss_dssp SB-TT--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999999999988776664
No 130
>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins. Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.
Probab=26.84 E-value=1.2e+02 Score=19.81 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=28.5
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
-||.| .+.|..|-+.+.--.|-+||....+.|++..+
T Consensus 29 ~cF~G-sElVdWLl~~~~~v~sR~eAv~lgq~Ll~~gv 65 (125)
T cd04437 29 QCCVG-TELVDWLLQQSPCVQSRSQAVGMWQVLLEEGV 65 (125)
T ss_pred ccccc-HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Confidence 47876 57788888887444588999999999988654
No 131
>PRK14278 chaperone protein DnaJ; Provisional
Probab=26.82 E-value=1.2e+02 Score=23.18 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHHHHHhhc----hhHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTE-EQLQVLIDKLVDSSIHS----LSTKLYDGF 83 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~-~ea~~~v~~lI~~S~~~----~~T~~YD~f 83 (91)
+-.++-.+++||.+. .+|++.+ +.|++++.- -.-+.||.|
T Consensus 23 ayr~la~~~hpD~~~~~~a~~~f-~~i~~Ay~vL~d~~~r~~YD~~ 67 (378)
T PRK14278 23 AYRKLARELHPDVNPDEEAQEKF-KEISVAYEVLSDPEKRRIVDLG 67 (378)
T ss_pred HHHHHHHHHCCCCCCcHHHHHHH-HHHHHHHHHhchhhhhhhhhcc
Confidence 344677789999964 4454444 567777743 345689975
No 132
>PRK14299 chaperone protein DnaJ; Provisional
Probab=26.41 E-value=1.4e+02 Score=21.86 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhhch----hHHHHHHHHH
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSL----STKLYDGFQY 85 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~----~T~~YD~fQ~ 85 (91)
-.++..+++||.+.+..++.--+.|+++++-. .-..||.|..
T Consensus 25 yr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 25 FKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred HHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 34677789999974333333446788887543 3468998753
No 133
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=25.75 E-value=98 Score=19.83 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.9
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 48 KNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 48 ~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
-++..++.|+.++.++|.+.|.+-+
T Consensus 85 As~i~L~isE~el~k~Vi~~v~~YL 109 (111)
T PRK06397 85 ASLIKLKISEDELRKFVINRVIEYL 109 (111)
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHh
Confidence 3478899999999999999887654
No 134
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=25.63 E-value=1.5e+02 Score=20.87 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=36.8
Q ss_pred HHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHH
Q psy9777 24 LRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTK 78 (91)
Q Consensus 24 lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~ 78 (91)
+-+-+...| .|..- -++..+|-. ..|.+|++.-+.++|+.....|.++
T Consensus 21 ~a~~l~~~G-~~VvG--vdsl~Yfw~----~rtP~~~a~Dl~~~i~~y~~~w~~~ 68 (192)
T PF06057_consen 21 IAEALAKQG-VPVVG--VDSLRYFWS----ERTPEQTAADLARIIRHYRARWGRK 68 (192)
T ss_pred HHHHHHHCC-CeEEE--echHHHHhh----hCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 445666777 77774 367777664 7899999999999999998888754
No 135
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=25.59 E-value=64 Score=18.12 Aligned_cols=15 Identities=20% Similarity=0.020 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHHh
Q psy9777 74 SLSTKLYDGFQYYTN 88 (91)
Q Consensus 74 ~~~T~~YD~fQ~~tn 88 (91)
.|+++++|..+..|-
T Consensus 4 ~~~~r~~D~~HR~tV 18 (59)
T PF14880_consen 4 AWGRRLADIAHRTTV 18 (59)
T ss_pred hhhHHHHHHHHHHHH
Confidence 588999999988763
No 136
>PHA02924 hypothetical protein; Provisional
Probab=25.51 E-value=58 Score=22.22 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHH
Q psy9777 18 LVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEE 58 (91)
Q Consensus 18 ~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ 58 (91)
+-+++.|++..+...++|-++. .....+++|...+-.|+
T Consensus 116 S~~vl~Lm~~LlsD~D~s~ik~--~l~vRLqk~~~~~~~~~ 154 (156)
T PHA02924 116 AAGIIILMEYIFDDTDMSHLKV--ALYRRIQRRYPIDDDEE 154 (156)
T ss_pred HHHHHHHHHHHhcccchHHHHH--HHHHHHHhcCCCCcccc
Confidence 3456667776677766777754 45567888887776554
No 137
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=25.33 E-value=1.8e+02 Score=18.33 Aligned_cols=20 Identities=15% Similarity=0.478 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhchhHHHHH
Q psy9777 62 VLIDKLVDSSIHSLSTKLYD 81 (91)
Q Consensus 62 ~~v~~lI~~S~~~~~T~~YD 81 (91)
+....++...........||
T Consensus 21 ~~~~~~~~~~~~~i~~~FY~ 40 (147)
T cd01068 21 KALRPVIEANADELVDRFYD 40 (147)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444
No 138
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=25.12 E-value=1.2e+02 Score=20.01 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=26.3
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcccc--hh--HHHHHHHhcCCCC-CHHHHHHHHHHHHHHHh
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFKSG--AA--TVQNLKNRFHMNL-TEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~~~--~~--~i~~l~~Rf~l~~-s~~ea~~~v~~lI~~S~ 72 (91)
-|+|+.+++. -+..-|..|+++.- |. .-..+.+-|...+ .|.++.+.+.+++.-+.
T Consensus 50 E~~HA~~l~~---~i~~rgg~~~~~~i~~~~~~~~~~~~e~l~~al~~E~~vt~~~~~l~~~A~ 110 (161)
T cd01056 50 EREHAEKLIK---YQNKRGGRVVLQDIKKPEKDEWGSGLEALELALDLEKLVNQSLLDLHKLAS 110 (161)
T ss_pred HHHHHHHHHH---HHHHcCCeeecCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555554 44444446777541 21 2223444444444 24445555555555444
No 139
>PRK14283 chaperone protein DnaJ; Provisional
Probab=24.89 E-value=1.3e+02 Score=22.86 Aligned_cols=40 Identities=20% Similarity=0.380 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHHHHHhh----chhHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTE-EQLQVLIDKLVDSSIH----SLSTKLYDGF 83 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~-~ea~~~v~~lI~~S~~----~~~T~~YD~f 83 (91)
+-.++-.+++||.+. .+|.+.+ +.|.+++. .-.-++||.|
T Consensus 25 ayr~la~~~HPD~~~~~~a~~~f-~~i~~Ay~~Lsd~~kR~~YD~~ 69 (378)
T PRK14283 25 AYRKLARKYHPDVSEEEGAEEKF-KEISEAYAVLSDDEKRQRYDQF 69 (378)
T ss_pred HHHHHHHHHCcCCCCCccHHHHH-HHHHHHHHHhchhHHHHHHhhh
Confidence 344677789999964 3444444 55666663 3456689986
No 140
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=24.09 E-value=1.1e+02 Score=19.79 Aligned_cols=42 Identities=19% Similarity=0.454 Sum_probs=23.4
Q ss_pred hcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Q psy9777 29 ELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 29 ~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S 71 (91)
...+ +|-|+.|.....-+++++....-++.+...+...+.+.
T Consensus 37 k~~~-ipGFRkGK~P~~vi~~~~g~~i~~~~~~~~~~~~~~~~ 78 (145)
T PF05697_consen 37 KKVK-IPGFRKGKAPRNVIEKRYGKEIREEAIEELLQEAYEEA 78 (145)
T ss_dssp TTTT-BTTS-TTSS-HHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred hhCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345 99999876556667888877644444334444344333
No 141
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=24.01 E-value=1.4e+02 Score=17.94 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=14.9
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHh
Q psy9777 64 IDKLVDSSIHSLSTKLYDGFQYYTN 88 (91)
Q Consensus 64 v~~lI~~S~~~~~T~~YD~fQ~~tn 88 (91)
+.+||..-+ ++.+.|.||.+.|
T Consensus 5 ilklvaaqv---gsqwid~y~sla~ 26 (84)
T cd08778 5 ILKLVAAQV---GSQWKDIYQFLCN 26 (84)
T ss_pred HHHHHHHHH---hhHHHHHHHHHhh
Confidence 455666554 5677888888776
No 142
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=23.76 E-value=90 Score=20.61 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhc--hhHHHHHHHHHHHhcCC
Q psy9777 54 NLTEEQLQVLIDKLVDSSIHS--LSTKLYDGFQYYTNGIL 91 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~S~~~--~~T~~YD~fQ~~tnGI~ 91 (91)
.++.+++.+++.....+. .+ +.-...+..-.+|.|+|
T Consensus 190 ~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 190 PLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred eCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 568999999999887665 32 35556678888888874
No 143
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=23.67 E-value=2.3e+02 Score=20.41 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHH---HHHHHHhhchhHHHHHHHHH
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLID---KLVDSSIHSLSTKLYDGFQY 85 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~---~lI~~S~~~~~T~~YD~fQ~ 85 (91)
..+=+.||.++.+|+....-.. +.++ -++++.|.+.|.-|.
T Consensus 47 ~~~~~~~~~~~~~D~~v~~sL~kFs~~L~-el~~~h~~L~dqaq~ 90 (215)
T cd07632 47 LAYEKQNFALGKGDEEVISTLQYFAKVVD-ELNVLHSELAKQLAD 90 (215)
T ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456789999998887665444 3443 467889999998874
No 144
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=23.33 E-value=65 Score=24.99 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCCCcccchhHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhh
Q psy9777 22 INLRSWLELSSQLPCFKSGAATVQNLKNRFH--MNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 22 l~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~--l~~s~~ea~~~v~~lI~~S~~ 73 (91)
+.|+++|=++..---| ..+++.++..+ -++|++|.+.++.+-...|-.
T Consensus 157 v~LiSlMDH~PGQrQf----~~le~Y~~yy~~k~~~s~~e~~~~i~~r~a~~~~ 206 (377)
T COG3454 157 VKLISLMDHTPGQRQF----ANLEKYREYYQGKRGLSDEEFAEFIEERQALSAR 206 (377)
T ss_pred eeEEEecCCCCCcchh----hhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Confidence 4567777665312223 34444444333 688999999999998886653
No 145
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=23.22 E-value=1.6e+02 Score=16.96 Aligned_cols=45 Identities=11% Similarity=0.262 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHH---HHHHHHhhchhHHHHHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLID---KLVDSSIHSLSTKLYDGFQYYT 87 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~---~lI~~S~~~~~T~~YD~fQ~~t 87 (91)
+++.+-+.+.-+.|.+++...-. ..|...-+...+.+|+.|+.+.
T Consensus 7 d~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI 54 (87)
T PF08700_consen 7 DVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFI 54 (87)
T ss_pred CHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44444445555666666665544 4455555667888888888764
No 146
>PF12140 DUF3588: Protein of unknown function (DUF3588); InterPro: IPR021987 This family of proteins is found in eukaryotes. Proteins in this family are typically between 129 and 866 amino acids in length, and the family is found in association with PF02820 from PFAM. The exact function of this family is not known.
Probab=23.06 E-value=1e+02 Score=20.07 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=29.7
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
..|+.|-+.|.|+--..-+.+-++.+|+.|++.
T Consensus 22 ~kv~~LP~~fGPg~~~~Vlre~vq~~i~aA~~~ 54 (118)
T PF12140_consen 22 RKVQQLPDHFGPGPVSVVLREVVQACIDAAYKP 54 (118)
T ss_pred HHHHhCccccCCCcHHHHHHHHHHHHHHHhcCH
Confidence 678899999999998888899999999999875
No 147
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=22.70 E-value=1.8e+02 Score=17.24 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=5.0
Q ss_pred HHHHHHHHH
Q psy9777 77 TKLYDGFQY 85 (91)
Q Consensus 77 T~~YD~fQ~ 85 (91)
|...|..|.
T Consensus 32 ~~~~d~iQ~ 40 (114)
T cd03156 32 TSTWNRVMI 40 (114)
T ss_pred HHHHHHHHh
Confidence 455666554
No 148
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=22.48 E-value=1.7e+02 Score=22.12 Aligned_cols=17 Identities=12% Similarity=0.300 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy9777 54 NLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~ 70 (91)
+++++||.+++.+|..+
T Consensus 360 ~~~~~~A~~~~~~l~~~ 376 (384)
T cd06206 360 GSDDEEAEEWLEELRNK 376 (384)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 78999999999998764
No 149
>KOG0262|consensus
Probab=22.47 E-value=34 Score=30.94 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=37.7
Q ss_pred HHhhcCCCCCCccc---chhHHHHHHHhcCCCCCHHHHHHHHH----HHHHHHhhchh
Q psy9777 26 SWLELSSQLPCFKS---GAATVQNLKNRFHMNLTEEQLQVLID----KLVDSSIHSLS 76 (91)
Q Consensus 26 elM~~~~~lPcf~~---~~~~i~~l~~Rf~l~~s~~ea~~~v~----~lI~~S~~~~~ 76 (91)
-+|..+..||||.. .|.+=-....||..++...|.-=|.. .||+-++..-+
T Consensus 930 PlMvSGKtLPsF~p~e~spraGGfI~~RFlTGi~PqeyfFHCMAGREGLIDTAVKTSR 987 (1640)
T KOG0262|consen 930 PLMVSGKTLPSFAPYETSPRAGGFIDGRFLTGIKPQEYFFHCMAGREGLIDTAVKTSR 987 (1640)
T ss_pred ceeecCCccCCcCCCCCCCCCCCcccceeecCCCchHHhhhhhccccchhhhHHhccc
Confidence 46777767999985 23444578899999999888766654 79998875433
No 150
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=1.2e+02 Score=22.63 Aligned_cols=60 Identities=20% Similarity=0.270 Sum_probs=40.3
Q ss_pred HHHHHHHhhcCCCCCCcccchhHHHHHHH-hcCCCCCHHHHHHHHH------HHHHHHhhchhHHHHHHHH
Q psy9777 21 IINLRSWLELSSQLPCFKSGAATVQNLKN-RFHMNLTEEQLQVLID------KLVDSSIHSLSTKLYDGFQ 84 (91)
Q Consensus 21 il~lvelM~~~~~lPcf~~~~~~i~~l~~-Rf~l~~s~~ea~~~v~------~lI~~S~~~~~T~~YD~fQ 84 (91)
++++.. +.++| .|-++. -..+-+++ +|++.-+.+-+.++.+ ++..+++|-|+...-+.|+
T Consensus 120 ~~~l~~-l~~ss-y~PlA~--~a~k~~kEe~fHl~~~~~~l~~l~~gT~~~~~~~Q~AlN~wwp~~lemf~ 186 (265)
T COG3396 120 IYQLEA-LADSS-YGPLAR--AAQKICKEEEFHLRHGKTWLKRLANGTEESRQMAQAALNRWWPRALEMFG 186 (265)
T ss_pred HHHHHH-HHhcc-chHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334443 44455 555543 33444444 8988888887777766 5788999999999888775
No 151
>PHA01794 hypothetical protein
Probab=22.17 E-value=1.8e+02 Score=19.42 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=18.1
Q ss_pred HhHHHHhhHHHHhhhHHHHHHHHHHhhc
Q psy9777 3 QHMFTGYFGVHAALSLVKIINLRSWLEL 30 (91)
Q Consensus 3 ~l~~~gf~~lalRk~~~~il~lvelM~~ 30 (91)
|+.-.|||.-+++|+.+.+-.-++.|..
T Consensus 83 Em~~SGFF~~ki~kyien~EK~~~yl~~ 110 (134)
T PHA01794 83 EMVDSGFFRAKIKKYIENMEKSARYLKA 110 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666788777777777666555555533
No 152
>PRK14298 chaperone protein DnaJ; Provisional
Probab=22.11 E-value=1.4e+02 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCH-HHHHHHHHHHHHHHhhc----hhHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTE-EQLQVLIDKLVDSSIHS----LSTKLYDGF 83 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~-~ea~~~v~~lI~~S~~~----~~T~~YD~f 83 (91)
+-.++..+++||.+. .+|++.+ +.|+++++- -.-..||.|
T Consensus 25 ayr~la~~~HPD~~~~~~~~~~f-~~i~~Ay~vL~d~~kR~~YD~~ 69 (377)
T PRK14298 25 AYRKLAMKYHPDKNKEPDAEEKF-KEISEAYAVLSDAEKRAQYDRF 69 (377)
T ss_pred HHHHHHHHhCccccCChhHHHHH-HHHHHHHHHhcchHhhhhhhhc
Confidence 334577789999963 4444444 567877743 344579976
No 153
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=22.09 E-value=1.9e+02 Score=17.29 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDK 66 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~ 66 (91)
..+.++-.=-+++++++|+.++..+
T Consensus 4 ~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 4 EEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5778888888899999998766554
No 154
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.02 E-value=89 Score=17.58 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy9777 53 MNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 53 l~~s~~ea~~~v~~lI~~S~ 72 (91)
.++|.+|+...+..+++..+
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~ 32 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEV 32 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHcCCC
Confidence 56777777777777766544
No 155
>KOG2758|consensus
Probab=21.99 E-value=91 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
|.-|-++ ++++++||+.-+.+||..+.
T Consensus 352 i~mLA~k--Lnm~~eeaErwivnlIr~~r 378 (432)
T KOG2758|consen 352 IDMLADK--LNMDPEEAERWIVNLIRTAR 378 (432)
T ss_pred HHHHHHH--hcCCHHHHHHHHHHHHHHhh
Confidence 4455555 46779999999999998765
No 156
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=21.75 E-value=1.5e+02 Score=17.74 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=25.3
Q ss_pred CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 35 PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 35 Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
.||.| .+.|..|-+.... -+.+||...-+.|++..+
T Consensus 27 ~cF~G-selVdWL~~~~~~-~~r~eAv~lg~~Ll~~G~ 62 (81)
T cd04439 27 KCFLG-NEFVSWLLEIGEI-SKPEEGVNLGQALLENGI 62 (81)
T ss_pred ceeEh-HHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCC
Confidence 37766 5677888876532 246799999998887643
No 157
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=21.01 E-value=3.4e+02 Score=19.82 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=24.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGF 83 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~f 83 (91)
+..+|+--| |++|++| .++++.+|+.|......+.+
T Consensus 66 ~~~NL~~af-Pe~s~~e----~~~i~~~~~~n~~~~~~E~~ 101 (314)
T PRK08943 66 ARINLSLCF-PEKSEAE----REAIIDEMFATAPQAMLMMA 101 (314)
T ss_pred HHHHHHHhC-CCCCHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 456888777 8999998 45566666666555555443
No 158
>PRK07375 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=20.96 E-value=1.2e+02 Score=19.14 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=22.7
Q ss_pred hHHHHhhHHHHhhhHHHHHHHHHHhhcC
Q psy9777 4 HMFTGYFGVHAALSLVKIINLRSWLELS 31 (91)
Q Consensus 4 l~~~gf~~lalRk~~~~il~lvelM~~~ 31 (91)
++.-|.+|+..|||.=+++-=+|+|..+
T Consensus 12 Lf~iG~~gll~~rnli~~ligleim~~a 39 (112)
T PRK07375 12 LLVIGLYGLIFKRNLLKKIIGLDVFQTG 39 (112)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 4556667788999999999999999764
No 159
>PRK14287 chaperone protein DnaJ; Provisional
Probab=20.75 E-value=2e+02 Score=21.87 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCCH-HHHHHHHHHHHHHHhhc----hhHHHHHHH
Q psy9777 45 QNLKNRFHMNLTE-EQLQVLIDKLVDSSIHS----LSTKLYDGF 83 (91)
Q Consensus 45 ~~l~~Rf~l~~s~-~ea~~~v~~lI~~S~~~----~~T~~YD~f 83 (91)
.++..+++||.+. .+|++.+ +.|+++++- -.-+.||.|
T Consensus 26 r~la~~~HpD~~~~~~~~~~f-~~i~~Ay~~L~d~~kR~~YD~~ 68 (371)
T PRK14287 26 RKLARKYHPDVNKAPDAEDKF-KEVKEAYDTLSDPQKKAHYDQF 68 (371)
T ss_pred HHHHHHHCcCCCCChhHHHHH-HHHHHHHHHhCcHhHHHHHHhh
Confidence 4566789999874 3454444 457877753 345689986
No 160
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=20.47 E-value=1.8e+02 Score=18.79 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy9777 57 EEQLQVLIDKLVDSSIHSLSTKLYDGFQY 85 (91)
Q Consensus 57 ~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~ 85 (91)
=++++.++..|++++-+.|+-++=+..+.
T Consensus 76 GdDvA~F~D~Ll~D~~ktw~dK~r~kLn~ 104 (111)
T COG4817 76 GDDVATFCDALLGDYEKTWRDKYRSKLNK 104 (111)
T ss_pred cchHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 35678889999999877777666655543
No 161
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=20.40 E-value=74 Score=22.02 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHHhh
Q psy9777 54 NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~S~~ 73 (91)
++|.++|..++.++|+++.+
T Consensus 248 ~~s~e~A~~~v~~~~~~~~~ 267 (270)
T PF03936_consen 248 GLSLEEAVDEVAEMINECIR 267 (270)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999875
No 162
>KOG2305|consensus
Probab=20.32 E-value=2.5e+02 Score=21.00 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=33.5
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHH
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVL 63 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~ 63 (91)
..+++..|-...+-| |+.|.|+. ..++.++.+-+.+..|.+..+++
T Consensus 249 f~Rys~~I~aV~~t~---GpiP~~~d-~~t~~kv~~ql~~~v~~d~l~~r 294 (313)
T KOG2305|consen 249 FKRYSAGITAVLKTM---GPIPDFTD-RKTANKVAEQLEPKVSLDNLAKR 294 (313)
T ss_pred HHHhhhhHHHHHHHc---CCCCCCcc-hhHHHHHHHHHhhccCchhHHHH
Confidence 356666677666666 67999984 37888888988888887765543
No 163
>PF06683 DUF1184: Protein of unknown function (DUF1184); InterPro: IPR009568 This family contains a number of hypothetical proteins of unknown function from Arabidopsis thaliana.
Probab=20.31 E-value=1.5e+02 Score=20.86 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=36.6
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGF 83 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~f 83 (91)
..++++.++++..+.-.||--++..-|+..+-.||-.++|.=
T Consensus 135 Q~lkkleekLrSaKdvSeanGF~RE~i~SnI~~LWksLF~~~ 176 (191)
T PF06683_consen 135 QELKKLEEKLRSAKDVSEANGFAREAIESNILHLWKSLFETE 176 (191)
T ss_pred HHHHHHHHHHhhhhhhHhhcchhHHHHHHhHHHHHHHHhccC
Confidence 467889999999999999999999999988888888888753
No 164
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.30 E-value=3.1e+02 Score=19.07 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=34.7
Q ss_pred HHHHHhhcCCCCCCcccchhHHH-HHH--H---hcCCCCCHHHHHHHHHHHHHHH--hhchhHHHHHHHH
Q psy9777 23 NLRSWLELSSQLPCFKSGAATVQ-NLK--N---RFHMNLTEEQLQVLIDKLVDSS--IHSLSTKLYDGFQ 84 (91)
Q Consensus 23 ~lvelM~~~~~lPcf~~~~~~i~-~l~--~---Rf~l~~s~~ea~~~v~~lI~~S--~~~~~T~~YD~fQ 84 (91)
+++|.|.. | +|++........ .+. . -....-+.++.++.+.+++++. ...+..+..+.++
T Consensus 281 ~~~Ea~~~-g-~Pvi~~~~~~~~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 348 (357)
T cd03795 281 VLLEAMAF-G-KPVISTEIGTGGSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAE 348 (357)
T ss_pred HHHHHHHc-C-CCEEecCCCCchhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 56777766 4 899975211111 122 1 1223346888899999998743 3455555566554
No 165
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=20.21 E-value=1.6e+02 Score=15.78 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHh
Q psy9777 56 TEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 56 s~~ea~~~v~~lI~~S~ 72 (91)
+|.|+.+.+.+||..+.
T Consensus 18 ~ESELskr~rrLIRaa~ 34 (44)
T PF08134_consen 18 TESELSKRIRRLIRAAR 34 (44)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 57788889999998765
No 166
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=20.17 E-value=2.8e+02 Score=20.35 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVD 69 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~ 69 (91)
++..+.+|+.|..|.+|+.+-+.-|++
T Consensus 139 ~~~~ia~~l~p~is~~ev~~sL~~L~~ 165 (271)
T TIGR02147 139 DPEELAKRCFPKISAEQVKESLDLLER 165 (271)
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 567799999999999999988886665
No 167
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=20.14 E-value=3.3e+02 Score=19.81 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=22.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDG 82 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~ 82 (91)
+..+|+--| |++|++|. ++++.+|+.|..-.+.|.
T Consensus 61 ~~~NL~~~f-Pe~s~~e~----~~i~~~~~~~~g~~~~E~ 95 (309)
T PRK06860 61 ARRNLELCF-PEMSEQER----EAIVVKNFESVGMALIET 95 (309)
T ss_pred HHHHHHHhC-CCCCHHHH----HHHHHHHHHHHHHHHHHH
Confidence 456888777 89999984 445555555554444444
No 168
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=20.13 E-value=1.2e+02 Score=21.38 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=16.6
Q ss_pred HHHHHHhcC-CCCCHHHHHHHHH
Q psy9777 44 VQNLKNRFH-MNLTEEQLQVLID 65 (91)
Q Consensus 44 i~~l~~Rf~-l~~s~~ea~~~v~ 65 (91)
=.-+|+||. ++++.+||+.-+.
T Consensus 72 RsfLKerfy~p~lspeeAaaRiK 94 (190)
T PLN02999 72 RSFIKEKYFMPGLSPEDAAARIK 94 (190)
T ss_pred HHHHHHhccCCCCCHHHHHHHHH
Confidence 346899987 5889999886554
No 169
>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5.4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....
Probab=20.07 E-value=1.9e+02 Score=16.56 Aligned_cols=44 Identities=16% Similarity=0.307 Sum_probs=34.0
Q ss_pred hcCCCCCCcccc--hhHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHhh
Q psy9777 29 ELSSQLPCFKSG--AATVQNLKNRFH-MNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 29 ~~~~~lPcf~~~--~~~i~~l~~Rf~-l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...| +|-+... ...+..+.+... .+++++.+...+..+|+.|..
T Consensus 30 ~~~~-~~i~d~~RE~~v~~~~~~~~~~~~l~~~~i~~if~~ii~~s~~ 76 (81)
T PF01817_consen 30 KENG-LPIFDPDREEEVLERLRELAEEGGLDPEFIERIFRAIIEESRA 76 (81)
T ss_dssp HHTT-CCSSTHHHHHHHHHHHHHHHHHTTSEHHHHHHHHHHHHHHHHH
T ss_pred HhCC-CCCCCcHHHHHHHHHHHHHhHhCCCCHHHHHHHHHHHHHHHHH
Confidence 3445 8988752 245677887777 899999999999999998874
Done!