Query psy9777
Match_columns 91
No_of_seqs 110 out of 497
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x6h_A GH13170P, VPS34, phosph 99.9 2.1E-21 7.1E-26 154.5 9.8 87 1-90 607-694 (696)
2 3ls8_A Phosphatidylinositol 3- 99.9 6.7E-22 2.3E-26 155.6 6.7 81 1-84 533-614 (614)
3 1e7u_A Phosphatidylinositol 3- 99.8 5.3E-21 1.8E-25 156.3 9.6 86 1-90 868-953 (961)
4 3hhm_A Phosphatidylinositol-4, 99.7 2.1E-18 7.1E-23 142.2 5.6 75 1-79 1003-1078(1091)
5 2wxf_A Phosphatidylinositol-4, 99.7 2.1E-17 7.3E-22 134.9 8.6 84 1-88 852-936 (940)
6 2y3a_A Phosphatidylinositol-4, 99.7 2.1E-17 7E-22 136.5 8.0 83 1-87 1004-1087(1092)
7 1rbl_M Ribulose 1,5 bisphospha 60.4 8.8 0.0003 23.8 3.2 21 51-71 16-36 (109)
8 3zxw_B Ribulose bisphosphate c 59.7 8.9 0.0003 24.1 3.1 22 50-71 14-35 (118)
9 4err_A Autotransporter adhesin 59.1 8.8 0.0003 23.1 2.9 30 59-88 12-41 (90)
10 1iru_J 20S proteasome; cell cy 57.0 24 0.00082 23.0 5.2 31 43-73 146-176 (205)
11 3unf_N Proteasome subunit beta 56.9 22 0.00076 23.0 5.0 32 42-73 133-164 (199)
12 1ryp_H 20S proteasome; multica 55.9 25 0.00087 22.9 5.1 32 42-73 142-173 (205)
13 1ryp_J 20S proteasome; multica 54.7 26 0.00089 22.8 5.0 31 43-73 145-175 (204)
14 1wdd_S Ribulose bisphosphate c 54.6 9.4 0.00032 24.4 2.6 21 50-70 16-36 (128)
15 1j2q_H Proteasome beta subunit 54.2 27 0.00093 22.7 5.0 31 43-73 136-166 (202)
16 1iru_H 20S proteasome; cell cy 53.9 26 0.00091 22.8 5.0 32 42-73 134-165 (205)
17 1svd_M Ribulose bisphosphate c 53.8 10 0.00034 23.6 2.6 21 50-70 17-37 (110)
18 1uw4_B UPF2, regulator of nons 53.7 44 0.0015 23.3 6.3 59 13-72 170-241 (248)
19 2ysr_A DEP domain-containing p 53.5 16 0.00054 22.1 3.5 36 36-72 40-81 (105)
20 2lwd_A Probable ATP-dependent 53.5 6.2 0.00021 23.9 1.6 70 13-84 16-86 (100)
21 1zl8_A LIN-7; heterodimer, alp 53.3 13 0.00043 20.2 2.6 38 12-54 3-40 (53)
22 1v3f_A Pleckstrin 2; three-hel 53.0 37 0.0013 20.9 5.8 50 21-72 8-71 (120)
23 1bxn_I Rubisco, protein (ribul 52.1 14 0.00047 23.9 3.2 21 51-71 10-30 (139)
24 1ryp_L 20S proteasome; multica 52.1 30 0.001 22.6 5.1 31 43-73 136-166 (212)
25 3nzj_H Proteasome component PU 51.9 26 0.0009 24.2 4.9 31 43-73 163-193 (261)
26 1ryp_I 20S proteasome; multica 51.2 29 0.00099 23.1 4.9 31 43-73 134-164 (222)
27 1iru_L 20S proteasome; cell cy 50.8 29 0.00098 22.6 4.7 31 43-73 135-165 (204)
28 3unf_H Proteasome subunit beta 50.0 30 0.001 23.4 4.9 30 43-72 134-163 (234)
29 1yar_H Proteasome beta subunit 49.9 32 0.0011 22.8 4.9 31 43-73 142-172 (217)
30 2vgq_A Maltose-binding peripla 48.7 7.9 0.00027 28.4 1.8 48 34-85 415-462 (477)
31 1bwv_S Rubisco, protein (ribul 48.4 13 0.00045 24.0 2.6 20 51-70 10-29 (138)
32 1iru_K 20S proteasome; cell cy 48.2 39 0.0013 21.8 5.1 31 43-73 139-169 (201)
33 4f0h_B Ribulose bisphosphate c 47.9 14 0.00047 23.9 2.6 21 51-71 10-30 (138)
34 1ryp_K 20S proteasome; multica 47.8 35 0.0012 22.0 4.8 31 43-73 140-170 (198)
35 1gk8_I Ribulose bisphosphate c 47.5 14 0.00048 23.9 2.6 20 51-70 17-36 (140)
36 1uhw_A Pleckstrin; three-helix 46.3 49 0.0017 20.2 5.7 50 21-72 8-71 (109)
37 1iru_I 20S proteasome; cell cy 46.2 27 0.00093 23.5 4.1 31 43-73 134-164 (234)
38 1ryp_C 20S proteasome; multica 46.0 34 0.0012 23.0 4.6 32 43-74 171-202 (244)
39 1q5q_H Proteasome beta-type su 45.6 39 0.0013 22.6 4.9 31 43-73 146-176 (235)
40 1yar_A Proteasome alpha subuni 44.8 32 0.0011 23.0 4.3 31 43-73 172-202 (233)
41 3h4p_a Proteasome subunit beta 44.4 38 0.0013 22.4 4.6 31 43-73 138-168 (219)
42 1ryp_B 20S proteasome; multica 42.9 39 0.0013 22.8 4.6 31 43-73 171-201 (250)
43 1iru_E 20S proteasome; cell cy 42.5 41 0.0014 22.5 4.6 31 43-73 177-207 (241)
44 1q1v_A DEK protein; winged-hel 42.5 45 0.0015 18.7 6.6 50 20-72 16-66 (70)
45 1iru_A 20S proteasome; cell cy 42.4 47 0.0016 22.3 4.9 31 43-73 175-207 (246)
46 1j2p_A Alpha-ring, proteasome 42.3 49 0.0017 22.2 5.0 31 43-73 171-201 (246)
47 1fsh_A Dishevelled-1; three-he 41.6 33 0.0011 20.6 3.6 51 20-72 20-85 (105)
48 3mi0_A Proteasome subunit alph 41.5 38 0.0013 23.2 4.3 30 43-72 163-192 (248)
49 1ryp_E 20S proteasome; multica 41.1 45 0.0015 22.3 4.6 31 43-73 171-201 (242)
50 1iru_M 20S proteasome; cell cy 40.9 54 0.0019 21.4 4.9 31 43-73 145-184 (213)
51 1iru_B 20S proteasome; cell cy 40.1 32 0.0011 22.9 3.7 31 43-73 169-199 (233)
52 2d8d_A Aroag, phospho-2-dehydr 39.7 53 0.0018 18.8 6.4 42 31-73 40-83 (90)
53 1iru_N 20S proteasome; cell cy 38.7 45 0.0015 21.9 4.3 31 43-73 146-178 (219)
54 1or4_A Heme-based aerotactic t 36.8 69 0.0024 20.4 4.9 43 42-84 32-74 (178)
55 2vgl_S AP-2 complex subunit si 36.5 44 0.0015 20.7 3.7 35 12-47 101-135 (142)
56 2w31_A Globin; oxygen transpor 36.4 31 0.0011 21.3 3.0 41 44-84 4-44 (162)
57 1ryp_D 20S proteasome; multica 35.8 56 0.0019 21.8 4.4 31 43-73 169-202 (241)
58 1q5r_H Proteasome beta-type su 35.1 67 0.0023 22.6 4.9 31 43-73 211-241 (294)
59 1ryp_G 20S proteasome; multica 34.4 84 0.0029 21.1 5.2 29 45-73 170-201 (244)
60 3nzj_K Proteasome component PR 32.5 65 0.0022 22.6 4.4 31 43-73 211-241 (287)
61 1xou_B Z5138 gene product; coi 32.2 41 0.0014 19.7 2.8 29 55-83 46-74 (95)
62 1st7_A ACBP, acyl-COA-binding 31.0 26 0.0009 20.3 1.8 25 53-77 62-86 (86)
63 3m00_A Aristolochene synthase; 30.7 56 0.0019 25.4 4.1 28 42-72 462-490 (550)
64 2veb_A Protoglobin; hemoprotei 30.6 67 0.0023 21.7 4.1 41 42-82 23-63 (195)
65 1iru_C 20S proteasome; cell cy 30.5 71 0.0024 21.7 4.3 32 42-73 170-202 (261)
66 1g8q_A CD81 antigen, extracell 30.4 72 0.0025 17.5 4.2 10 77-86 32-41 (90)
67 3h4p_A Proteasome subunit alph 30.1 40 0.0014 23.2 2.9 30 44-73 177-206 (264)
68 3o2p_E Cell division control p 30.0 49 0.0017 19.4 2.9 46 23-70 27-72 (88)
69 1eum_A Ferritin 1; ECFTNA, met 29.3 45 0.0015 21.0 2.9 22 14-38 50-71 (165)
70 3e6s_A Ferritin; iron storage, 29.1 57 0.002 20.9 3.4 22 14-38 49-70 (168)
71 2jay_A Proteasome; hydrolase; 28.9 62 0.0021 22.7 3.8 31 43-73 203-233 (291)
72 1xkm_B Distinctin chain B; por 27.2 51 0.0018 14.8 2.1 16 5-22 2-17 (26)
73 1ryp_N 20S proteasome; multica 26.9 63 0.0022 21.4 3.5 31 43-73 151-186 (233)
74 1ryp_M 20S proteasome; multica 26.8 1.2E+02 0.0043 19.8 4.9 23 51-73 171-193 (222)
75 1ufm_A COP9 complex subunit 4; 26.5 47 0.0016 19.1 2.4 27 42-70 31-57 (84)
76 1ps1_A Pentalenene synthase; a 26.4 55 0.0019 22.7 3.2 21 54-74 245-265 (337)
77 4am5_A Bacterioferritin; metal 26.3 55 0.0019 20.3 2.9 22 14-38 51-72 (159)
78 1ryp_A 20S proteasome; multica 26.0 66 0.0023 21.5 3.4 31 43-73 169-206 (243)
79 1hbk_A ACBP, acyl-COA binding 25.9 61 0.0021 18.8 2.8 58 19-76 25-88 (89)
80 1s3q_A Ferritin; ferroxidase, 25.9 52 0.0018 21.1 2.8 22 14-38 52-73 (173)
81 3qz3_A Ferritin; structural ge 25.8 55 0.0019 21.3 2.9 23 13-38 58-80 (184)
82 1di1_A Aristolochene synthase; 25.8 58 0.002 22.1 3.2 31 42-74 229-259 (300)
83 3nzj_F Proteasome component C1 25.7 1.4E+02 0.0047 20.9 5.2 31 44-74 173-206 (288)
84 1vlg_A Ferritin; TM1128, struc 25.3 1.2E+02 0.004 19.2 4.4 24 12-38 62-85 (176)
85 3v1v_A 2-MIB synthase, 2-methy 25.2 56 0.0019 24.4 3.2 32 42-75 355-386 (433)
86 3gn4_A Myosin-VI; unconvention 25.1 61 0.0021 21.0 2.9 19 5-25 54-72 (148)
87 2lbb_A Acyl COA binding protei 25.1 72 0.0025 19.0 3.1 24 53-76 72-95 (96)
88 3kb9_A EPI-isozizaene synthase 24.8 60 0.002 23.4 3.2 22 54-75 287-308 (382)
89 1w63_Q Adapter-related protein 24.6 68 0.0023 20.3 3.1 27 12-39 101-127 (158)
90 3uno_A Probable bacterioferrit 24.5 62 0.0021 21.2 3.0 22 14-38 55-76 (189)
91 3n0f_A Isoprene synthase; terp 24.0 76 0.0026 24.6 3.8 29 42-73 465-494 (555)
92 1n1b_A (+)-bornyl diphosphate 23.9 83 0.0028 24.2 3.9 30 42-74 463-493 (549)
93 1iru_G 20S proteasome; cell cy 23.6 59 0.002 22.0 2.8 31 44-74 173-203 (254)
94 4akr_A F-actin-capping protein 23.1 1.7E+02 0.0058 20.7 5.2 35 56-90 216-250 (281)
95 3rko_K NADH-quinone oxidoreduc 23.1 79 0.0027 18.5 3.0 27 5-31 15-41 (100)
96 1g0u_M Proteasome component PR 22.9 82 0.0028 21.5 3.5 31 43-73 184-219 (266)
97 3kfu_G Glutamyl-tRNA(Gln) amid 22.4 1.2E+02 0.0042 17.5 4.1 27 41-67 8-34 (92)
98 3g4d_A (+)-delta-cadinene synt 22.2 87 0.003 24.3 3.8 29 42-73 467-496 (554)
99 1lbj_A Motilin; A-helix, B-tur 22.0 58 0.002 14.9 1.7 15 34-50 2-16 (26)
100 2blf_B SORB, sulfite\:cytochro 21.3 1.2E+02 0.0039 16.8 4.6 27 42-68 52-78 (81)
101 3h0l_C Glutamyl-tRNA(Gln) amid 21.1 1.3E+02 0.0045 17.4 4.1 26 42-67 5-30 (94)
102 1nkz_B Light-harvesting protei 21.0 96 0.0033 15.7 2.9 14 54-67 2-15 (41)
103 1q5q_A Proteasome alpha-type s 20.9 81 0.0028 21.5 3.1 30 43-72 163-192 (259)
104 1l6x_B Minimized B-domain of p 20.5 90 0.0031 15.2 2.6 23 47-69 9-32 (34)
105 1iru_D 20S proteasome; cell cy 20.4 74 0.0025 21.4 2.8 31 43-73 168-200 (248)
106 2ong_A 4S-limonene synthase; m 20.4 1.1E+02 0.0036 23.5 3.9 25 46-73 461-485 (543)
107 2wjv_D Regulator of nonsense t 20.4 90 0.0031 18.5 2.8 18 57-74 9-26 (97)
108 2v2p_A Ferritin light chain; m 20.1 71 0.0024 20.4 2.5 22 14-38 58-79 (174)
No 1
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=99.85 E-value=2.1e-21 Score=154.54 Aligned_cols=87 Identities=21% Similarity=0.345 Sum_probs=82.7
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSG-AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~-~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~ 79 (91)
||.+|+.+| .++|+|.+.|++++++|++++ +|||+.+ +.++.++++||++++||+||.++|.++|++|+++|+|++
T Consensus 607 Fr~~c~~~~--~~LR~~~~~il~ll~lml~~~-lp~~~~~~~~~i~~l~~rf~l~lseeea~~~~~~lI~~S~~s~~t~~ 683 (696)
T 2x6h_A 607 FRKQCYTAY--LHLRRHANVMLNLFSLMVDAT-VPDIALEPDKAVKKVEENLQLGLTDEEAVQHLQSLLDVSITAVMPAL 683 (696)
T ss_dssp HHHHHHHHH--HHHHHTHHHHHHHHHHTTTCC-CTTTTSSGGGHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHH--HHHHhCHHHHHHHHHHHHcCC-CCccccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHHH
Confidence 789999999 999999999999999999998 9999964 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q psy9777 80 YDGFQYYTNGI 90 (91)
Q Consensus 80 YD~fQ~~tnGI 90 (91)
||.||++++++
T Consensus 684 ~d~~h~~aq~~ 694 (696)
T 2x6h_A 684 VEQIHRFTQYW 694 (696)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999974
No 2
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=99.85 E-value=6.7e-22 Score=155.61 Aligned_cols=81 Identities=22% Similarity=0.431 Sum_probs=69.8
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSG-AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~-~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~ 79 (91)
||++|++|| .++|+|++.|++|+++|+++| +|||+.+ +.++.++++||++++||+||.++|.++|++|+++|+|++
T Consensus 533 Fr~~c~~~~--~~LR~~~~~il~l~~lM~~s~-lp~~~~~~~~~i~~l~~rf~l~lse~ea~~~~~~lI~~S~~s~~~~~ 609 (614)
T 3ls8_A 533 FRKQCYTAF--LHLRRYSNLILNLFSLMVDAN-IPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVHALFAAV 609 (614)
T ss_dssp HHHHHHHHH--HHHHHTHHHHHHHHHTTTTSC-CHHHHTSGGGHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHH--HHHHHCHHHHHHHHHHHhcCC-CCccccChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhHHHH
Confidence 799999999 999999999999999999998 9999853 368999999999999999999999999999999999999
Q ss_pred HHHHH
Q psy9777 80 YDGFQ 84 (91)
Q Consensus 80 YD~fQ 84 (91)
||+++
T Consensus 610 ~d~~h 614 (614)
T 3ls8_A 610 VEQIH 614 (614)
T ss_dssp -----
T ss_pred HHhhC
Confidence 99985
No 3
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=99.84 E-value=5.3e-21 Score=156.27 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=82.9
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY 80 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~Y 80 (91)
||.+|+++| .++|+|++.|++++++|+.++ +|||++ +.++.++|+||++++||+||++++.++|++|+++++|.+|
T Consensus 868 F~~~c~~~~--~~LR~~~~~l~~ll~lm~~~~-lp~~~~-~~~i~~lr~rf~l~~se~eA~~~~~~lI~~s~~~~~t~~~ 943 (961)
T 1e7u_A 868 FQDVCVKAY--LALRHHTNLLIILFSMMLMTG-MPQLTS-KEDIEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQF 943 (961)
T ss_dssp HHHHHHHHH--HHHHTTHHHHHHHHHHHHHHS-CSSCCC-HHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHH--HHHHHhHHHHHHHHHHHhcCC-CCccCc-hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeEEe
Confidence 789999999 999999999999999999998 999987 5789999999999999999999999999999998889999
Q ss_pred HHHHHHHhcC
Q psy9777 81 DGFQYYTNGI 90 (91)
Q Consensus 81 D~fQ~~tnGI 90 (91)
||||+.++||
T Consensus 944 n~~~h~~~gi 953 (961)
T 1e7u_A 944 NWFLHLVLGI 953 (961)
T ss_dssp HHHHHHTTCC
T ss_pred hhHHHHHHhh
Confidence 9999999998
No 4
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=99.73 E-value=2.1e-18 Score=142.18 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=70.9
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh-hchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~-~~~~T~~ 79 (91)
||++|++|| .++|+|++.|++|+++|+++| +|||++ +.++.++|+||++++||+||++++.++|++|+ ++|+|++
T Consensus 1003 Fr~~c~~a~--~~LR~~~~~il~LlelM~~s~-lp~~~~-~~~i~~lr~rf~l~lseeeA~~~f~~~i~~s~~~~~~t~~ 1078 (1091)
T 3hhm_A 1003 FQEMCYKAY--LAIRQHANLFINLFSMMLGSG-MPELQS-FDDIAYIRKTLALDKTEQEALEYFMKQMNDARHGGWTTKM 1078 (1091)
T ss_dssp HHHHHHHHH--HHHHHTTTHHHHHHHHGGGSC-CTTCSS-HHHHHHHHHHSCCSSCHHHHHHHHHHHHHHCCCCCCCSSS
T ss_pred HHHHHHHHH--HHHHhhhHHHHHHHHHHhcCC-CCccCc-hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeh
Confidence 799999999 999999999999999999999 999987 57899999999999999999999999999999 5788864
No 5
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=99.71 E-value=2.1e-17 Score=134.92 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=68.1
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh-hchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~-~~~~T~~ 79 (91)
||.+|+.+| .++|+|.+.|++++++|+.++ +|||++ ..++.++|+||++++||+||++++.++|++|+ ++|+|++
T Consensus 852 Fr~~c~~~~--~~LR~~~~~ll~ll~lml~~~-lp~~~~-~~~i~~l~~r~~l~~se~ea~~~~~~~i~~s~~~~~~t~~ 927 (940)
T 2wxf_A 852 FRGYCERAY--TILRRHGLLFLHLFALMRAAG-LPELSC-SKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKV 927 (940)
T ss_dssp HHHHHHHHH--HHHHHTHHHHHHHHHHHGGGC-CTTSCS-HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHH--HHHHhHHHHHHHHHHHHhCCC-CcccCc-hHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeh
Confidence 789999999 999999999999999999998 999987 47899999999999999999999999999999 6899999
Q ss_pred HHHHHHHHh
Q psy9777 80 YDGFQYYTN 88 (91)
Q Consensus 80 YD~fQ~~tn 88 (91)
-+.+|.+.+
T Consensus 928 n~~~H~~~~ 936 (940)
T 2wxf_A 928 NWLAHNVSK 936 (940)
T ss_dssp ---------
T ss_pred hHHHHHhcc
Confidence 888887654
No 6
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=99.70 E-value=2.1e-17 Score=136.50 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=76.0
Q ss_pred CHHhHHHHhhHHHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh-hchhHHH
Q psy9777 1 MRQHMFTGYFGVHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTKL 79 (91)
Q Consensus 1 ~r~l~~~gf~~lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~-~~~~T~~ 79 (91)
||.+|+++| .++|+|.+.|++++++|+.++ +|||++ ..++.++|+||++++||+||++++.++|++|+ ++|+|++
T Consensus 1004 Fr~~c~~a~--~~LR~~~~~Il~ll~lml~~~-Lp~~~~-~~~i~~lr~rf~l~~seeeA~~~~~~~I~~s~~~~~~t~~ 1079 (1092)
T 2y3a_A 1004 FRQCCEDAY--LILRRHGNLFITLFALMLTAG-LPELTS-VKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTKV 1079 (1092)
T ss_dssp HHHHHHHHH--HHHHHTHHHHHHHHHHTSTTC-CSSCSS-HHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHH--HHHHhCHHHHHHHHHHHhCCC-Cccccc-hhHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHhcCceeeh
Confidence 799999999 999999999999999999998 999987 57899999999999999999999999999999 6799998
Q ss_pred HHHHHHHH
Q psy9777 80 YDGFQYYT 87 (91)
Q Consensus 80 YD~fQ~~t 87 (91)
.+.+|.+.
T Consensus 1080 n~~~H~~~ 1087 (1092)
T 2y3a_A 1080 NWMAHTVR 1087 (1092)
T ss_dssp HHHSCC--
T ss_pred hHHHHHhc
Confidence 87766554
No 7
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=60.37 E-value=8.8 Score=23.81 Aligned_cols=21 Identities=14% Similarity=0.415 Sum_probs=18.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy9777 51 FHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~S 71 (91)
+.|++|++|.++.|+.+|++-
T Consensus 16 yLP~lt~eqI~kQI~Yll~qG 36 (109)
T 1rbl_M 16 YLPPLSDRQIAAQIEYMIEQG 36 (109)
T ss_dssp TSSCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHCC
Confidence 678999999999999999863
No 8
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=59.73 E-value=8.9 Score=24.13 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.4
Q ss_pred hcCCCCCHHHHHHHHHHHHHHH
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~S 71 (91)
.+.|+||++|.++.|+.+|++-
T Consensus 14 SyLP~Lt~eqI~kQV~yll~qG 35 (118)
T 3zxw_B 14 SYLPPLSDAQIARQIQYAIDQG 35 (118)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHhCC
Confidence 5779999999999999999864
No 9
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=59.13 E-value=8.8 Score=23.10 Aligned_cols=30 Identities=13% Similarity=0.025 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHh
Q psy9777 59 QLQVLIDKLVDSSIHSLSTKLYDGFQYYTN 88 (91)
Q Consensus 59 ea~~~v~~lI~~S~~~~~T~~YD~fQ~~tn 88 (91)
+++.-..+++.+|+.+....+-+++|+..|
T Consensus 12 ~aA~V~gK~~G~SYq~iid~l~eyh~~~~~ 41 (90)
T 4err_A 12 ERAKVFAKPIGASYQGILDQLDLVHQAKGR 41 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhhcCchHHHHHHHHHHHHHHcch
Confidence 447777899999999999999999988765
No 10
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=56.98 E-value=24 Score=22.99 Aligned_cols=31 Identities=10% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 146 a~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 176 (205)
T 1iru_J 146 MYGMCESLWEPNMDPDHLFETISQAMLNAVD 176 (205)
T ss_dssp HHHHHHHHCCSSCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999998887765
No 11
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=56.85 E-value=22 Score=22.99 Aligned_cols=32 Identities=6% Similarity=0.145 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
.....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 133 ~a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 164 (199)
T 3unf_N 133 YIYGYVDAAYKPGMTPEECRRFTTNAITLAMN 164 (199)
T ss_dssp GGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999988887664
No 12
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=55.85 E-value=25 Score=22.92 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
.....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 142 ~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~ 173 (205)
T 1ryp_H 142 FIYGYCDKNFRENMSKEETVDFIKHSLSQAIK 173 (205)
T ss_dssp GGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999988877654
No 13
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=54.75 E-value=26 Score=22.79 Aligned_cols=31 Identities=16% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+.+
T Consensus 145 a~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 175 (204)
T 1ryp_J 145 LFGMCESLYEPNLEPEDLFETISQALLNAAD 175 (204)
T ss_dssp HHHHHHHHCCSSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhcCCCcCHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999998887664
No 14
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=54.56 E-value=9.4 Score=24.37 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=18.3
Q ss_pred hcCCCCCHHHHHHHHHHHHHH
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
.|.|++||+|.++.|+.+|.+
T Consensus 16 SyLP~lt~eqI~kQI~Yll~q 36 (128)
T 1wdd_S 16 SYLPPLTVEDLLKQIEYLLRS 36 (128)
T ss_dssp TTSSCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 367899999999999999875
No 15
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=54.19 E-value=27 Score=22.66 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 136 a~~~Le~~~~~~~s~eea~~la~~al~~~~~ 166 (202)
T 1j2q_H 136 AYGVLEDRFTPEIGVDEAVELAVRAIYSAMK 166 (202)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999988887654
No 16
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=53.85 E-value=26 Score=22.77 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=26.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
.....|++.+.+++|.+||.+.+.+-+..+.+
T Consensus 134 ~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 165 (205)
T 1iru_H 134 YIYGYVDATYREGMTKEECLQFTANALALAME 165 (205)
T ss_dssp GGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999988877654
No 17
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=53.80 E-value=10 Score=23.58 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=18.3
Q ss_pred hcCCCCCHHHHHHHHHHHHHH
Q psy9777 50 RFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 50 Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
.+.|++|++|.++.|+.+|++
T Consensus 17 SyLP~lt~eqI~kQV~Yll~q 37 (110)
T 1svd_M 17 SYLPPMNAERIRAQIKYAIAQ 37 (110)
T ss_dssp TTSCCCCHHHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHC
Confidence 367899999999999999875
No 18
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=53.69 E-value=44 Score=23.32 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=43.9
Q ss_pred HHhhhHHHHHHHHHHhh--cCCCCCCcccc---h--------hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 13 HAALSLVKIINLRSWLE--LSSQLPCFKSG---A--------ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 13 alRk~~~~il~lvelM~--~~~~lPcf~~~---~--------~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
..++++|.++..++--. +.+ .|+|.+. | ..++.+|.++....|-+||.+.++++-.+-+
T Consensus 170 ~~~kkLd~fL~ffQ~Y~~~K~~-~~~~~k~~plP~~vef~l~D~~~~lrp~~~~~~~~eEa~~~v~~le~~~~ 241 (248)
T 1uw4_B 170 SSKRKLDCFLVYFQRYVWWKKS-LEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFL 241 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-STTCCSSSCCCHHHHHHHHHHHHHHCTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhccc-ccccccCCCCCHHHHHHHHHHHHHhcccCcccCCHHHHHHHHHHHHHHHH
Confidence 46799999999998874 345 7777642 1 3455667778888899999999999877654
No 19
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.49 E-value=16 Score=22.09 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=28.4
Q ss_pred CcccchhHHHHHHHh------cCCCCCHHHHHHHHHHHHHHHh
Q psy9777 36 CFKSGAATVQNLKNR------FHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 36 cf~~~~~~i~~l~~R------f~l~~s~~ea~~~v~~lI~~S~ 72 (91)
||.| .+.|+-|-+. |....|-+||...-+.|++..+
T Consensus 40 CF~G-sE~VdWL~~~l~~~~~fg~~~sR~eAv~lgq~Ll~~gv 81 (105)
T 2ysr_A 40 CFTA-GEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHV 81 (105)
T ss_dssp CEEH-HHHHHHHHHHHHHSSSSTTTCCHHHHHHHHHHHHHTTS
T ss_pred cccc-hHHHHHHHHhcccccccCccCCHHHHHHHHHHHHHCCC
Confidence 8876 5777777666 5677899999999999998643
No 20
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=53.46 E-value=6.2 Score=23.95 Aligned_cols=70 Identities=10% Similarity=0.036 Sum_probs=37.9
Q ss_pred HHhhhHHHHHHHHHHhhcCCCC-CCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy9777 13 HAALSLVKIINLRSWLELSSQL-PCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQ 84 (91)
Q Consensus 13 alRk~~~~il~lvelM~~~~~l-Pcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ 84 (91)
-+|.....|...+...--=+.| ||++. .+.+.++..-.-.-+-+-|...+..|+...-.+|+..+-|...
T Consensus 16 lL~~~~p~l~~~I~p~~IL~~L~~~L~~--~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~~~gWf~~fl~AL~ 86 (100)
T 2lwd_A 16 LLKRLQPEFKTRIIPTDIISDLSECLIN--QECEEILQICSTKGMMAGAEKLVECLLRSDKENWPKTLKLALE 86 (100)
T ss_dssp HHHHTHHHHHHHCCTTTTHHHHTTTSCH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHCCH--HHHHHHHHHHHccChHHHHHHHHHHHHhcCcCCcHHHHHHHHH
Confidence 4666777766544332111124 79976 5666666554444444455555555655233567766665543
No 21
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=53.30 E-value=13 Score=20.18 Aligned_cols=38 Identities=11% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHHHHhcCCC
Q psy9777 12 VHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMN 54 (91)
Q Consensus 12 lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~ 54 (91)
|.+-+..++.+.|+|....+|++|- ..+..|++=+..+
T Consensus 3 l~L~RDv~RaiELle~lq~sgevp~-----~KL~aLq~VLqSd 40 (53)
T 1zl8_A 3 LNLERDVQRILELMEHVQKTGEVNN-----AKLASLQQVLQSE 40 (53)
T ss_dssp CHHHHHHHHHHHHHHHHGGGSSSTH-----HHHHHHHHHHSCS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHH
Confidence 4567788899999999999997652 4556666655544
No 22
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=52.96 E-value=37 Score=20.86 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=36.7
Q ss_pred HHHHHHHhhcC-CCCC-------------CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 21 IINLRSWLELS-SQLP-------------CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 21 il~lvelM~~~-~~lP-------------cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
+-.|++.|.+. +.+| ||.+ .+.|..|-+.. .-.+-+||......|++..+
T Consensus 8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~G-sdlVdWL~~~~-~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLG-SSLVDWLISSN-FAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEH-HHHHHHHHHTT-SCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCccCCCeeeeeEEccEEccceeeh-HHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCC
Confidence 55778888764 2276 8876 57788888864 34588999999999988643
No 23
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=52.14 E-value=14 Score=23.91 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.4
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy9777 51 FHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~S 71 (91)
|.|++|++|..+.|+.+|++-
T Consensus 10 yLP~ltdeqI~kQI~YlL~qG 30 (139)
T 1bxn_I 10 FLPELTDEQITKQLEYCLNQG 30 (139)
T ss_dssp TSSCCCHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHCC
Confidence 678999999999999999863
No 24
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=52.11 E-value=30 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 136 a~~~Le~~~~~~~s~eea~~la~~al~~~~~ 166 (212)
T 1ryp_L 136 AYGVLDSNYKWDLSVEDALYLGKRSILAAAH 166 (212)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999988876654
No 25
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=51.94 E-value=26 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++++.+++|.+||.+.+.+-+..+..
T Consensus 163 a~~~Le~~~~~~ms~eEA~~la~~al~~a~~ 193 (261)
T 3nzj_H 163 AMAVLESHWKQDLTKEEAIKLASDAIQAGIW 193 (261)
T ss_dssp HHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999988887663
No 26
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=51.24 E-value=29 Score=23.09 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 134 a~~~Le~~~~~~ms~eeA~~la~~al~~~~~ 164 (222)
T 1ryp_I 134 AMAVLESHWKQDLTKEEAIKLASDAIQAGIW 164 (222)
T ss_dssp HHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999988877653
No 27
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=50.81 E-value=29 Score=22.59 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++++.+++|.+||.+.+.+-+..+..
T Consensus 135 a~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 165 (204)
T 1iru_L 135 AYGVMDRGYSYDLEVEQAYDLARRAIYQATY 165 (204)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4557888899999999999999988876653
No 28
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=49.99 E-value=30 Score=23.41 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
....|++++.+++|.+||.+.+.+-+..+.
T Consensus 134 a~~~Le~~~~~~ms~eeA~~la~~al~~~~ 163 (234)
T 3unf_H 134 AVALLEDRFQPNMTLEAAQELLVEAITAGI 163 (234)
T ss_dssp HHHHHHHHCCSSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 455788999999999999999988887765
No 29
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=49.86 E-value=32 Score=22.77 Aligned_cols=31 Identities=10% Similarity=0.171 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 142 a~~~Le~~~~~~~s~eea~~la~~al~~~~~ 172 (217)
T 1yar_H 142 VYGVLESQYSEKMTVDEGVDLVIRAISAAKQ 172 (217)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHHHHHh
Confidence 4567889999999999999999888876653
No 30
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=48.71 E-value=7.9 Score=28.41 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=40.0
Q ss_pred CCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy9777 34 LPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQY 85 (91)
Q Consensus 34 lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~ 85 (91)
|||... .+...++++..-+.|.++|...+..+.+ .++|...+-+....
T Consensus 415 l~~~~~--~d~~~i~~~~~~~~~~~~a~~~~~~~~~--~~~w~~~~~~~l~~ 462 (477)
T 2vgq_A 415 LPCLTA--RDQDRLRATCTLSGNRDTLWHLFNTLQR--RPGWVEYFIAALRG 462 (477)
T ss_dssp CTTSCH--HHHHHHHHHHHHHCHHHHHHHHHHHHTT--STTHHHHHHHHHHH
T ss_pred CccCcH--HHHHHHHHHHhccccHHHHHHHHHHHhh--CCChHHHHHHHHHH
Confidence 899986 8899999999999999999999998855 48887777665544
No 31
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=48.42 E-value=13 Score=23.98 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.7
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy9777 51 FHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~ 70 (91)
|.|++|++|..+.|+.+|++
T Consensus 10 yLP~ltdeqI~kQI~Yll~q 29 (138)
T 1bwv_S 10 FLPDLTDEQIKKQIDYMISK 29 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHC
Confidence 67899999999999999875
No 32
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=48.18 E-value=39 Score=21.85 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 139 a~~~Le~~~~~~~s~eea~~l~~~al~~a~~ 169 (201)
T 1iru_K 139 TLSILDRYYTPTISRERAVELLRKCLEELQK 169 (201)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999888876653
No 33
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=47.85 E-value=14 Score=23.92 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=18.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHH
Q psy9777 51 FHMNLTEEQLQVLIDKLVDSS 71 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~S 71 (91)
|.|++||+|..+.|+.+|++-
T Consensus 10 yLP~ltd~qI~kQI~YlL~qG 30 (138)
T 4f0h_B 10 FLPDLTDEQIKKQIDYMISKK 30 (138)
T ss_dssp TSCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHhCC
Confidence 679999999999999998753
No 34
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=47.83 E-value=35 Score=21.99 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 140 a~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 170 (198)
T 1ryp_K 140 TFSLLDHHYRPDMTTEEGLDLLKLCVQELEK 170 (198)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4557888999999999999988888776653
No 35
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=47.54 E-value=14 Score=23.92 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.7
Q ss_pred cCCCCCHHHHHHHHHHHHHH
Q psy9777 51 FHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~ 70 (91)
+.|++|++|..+.|+.+|.+
T Consensus 17 yLP~lt~eqI~kQI~YlL~q 36 (140)
T 1gk8_I 17 YLPPLTDEQIAAQVDYIVAN 36 (140)
T ss_dssp TSSCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHC
Confidence 67899999999999999864
No 36
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=46.31 E-value=49 Score=20.24 Aligned_cols=50 Identities=8% Similarity=0.122 Sum_probs=36.4
Q ss_pred HHHHHHHhhcC-CCCC-------------CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 21 IINLRSWLELS-SQLP-------------CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 21 il~lvelM~~~-~~lP-------------cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
+-.|++-|++. +.+| ||.+ .+.|..|-+++ .--+.+||..+...|++..+
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~G-selVdWLi~~~-~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTG-SGVIDWLVSNK-LVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCH-HHHHHHHHHHT-SSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCceeeeeEECCEEccccccc-hHHHHHHHHcC-CCCCHHHHHHHHHHHHHCCe
Confidence 55788889853 2266 6765 46788888877 33378999999999998653
No 37
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=46.16 E-value=27 Score=23.50 Aligned_cols=31 Identities=16% Similarity=0.440 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 134 a~~~Le~~~~~~ms~eeA~~la~~al~~a~~ 164 (234)
T 1iru_I 134 AMAVFEDKFRPDMEEEEAKNLVSEAIAAGIF 164 (234)
T ss_dssp HHHHHHHSCCTTCCHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 4467888999999999999999988877553
No 38
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=46.01 E-value=34 Score=22.98 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
....|++.+.+++|.+||.+.+.+-+..+...
T Consensus 171 a~~~Le~~~~~~ms~eea~~la~~al~~~~~r 202 (244)
T 1ryp_C 171 AQTLLQMDYKDDMKVDDAIELALKTLSKTTDS 202 (244)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcc
Confidence 45678889999999999999999888876643
No 39
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=45.64 E-value=39 Score=22.62 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+.+
T Consensus 146 a~~~Le~~~~~~ms~eeA~~la~~al~~a~~ 176 (235)
T 1q5q_H 146 AKSALKKIYSPDSDEETALRAAIESLYDAAD 176 (235)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999988876654
No 40
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=44.82 E-value=32 Score=22.95 Aligned_cols=31 Identities=29% Similarity=0.318 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+++++|.+||.+.+.+-+..+..
T Consensus 172 a~~~Le~~~~~~~s~eea~~la~~al~~~~~ 202 (233)
T 1yar_A 172 VVSFLEREYKENLPEKEAVTLGIKALKSSLE 202 (233)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 4557888999999999999999988877654
No 41
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=44.37 E-value=38 Score=22.44 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 138 a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 168 (219)
T 3h4p_a 138 AYGVLEAGYDRDMSVEEGIKLALNALKSAME 168 (219)
T ss_dssp HHHHHHTSCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999998887765
No 42
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=42.88 E-value=39 Score=22.80 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 171 a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (250)
T 1ryp_B 171 AKTFLEKRWNDELELEDAIHIALLTLKESVE 201 (250)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhc
Confidence 4557888999999999999999988877654
No 43
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=42.54 E-value=41 Score=22.53 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 177 a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 207 (241)
T 1iru_E 177 AQSSLQELYHKSMTLKEAIKSSLIILKQVME 207 (241)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 4557888999999999999999988887664
No 44
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=42.47 E-value=45 Score=18.73 Aligned_cols=50 Identities=18% Similarity=0.190 Sum_probs=32.1
Q ss_pred HHHHHHHHhhcCCCCCCcccchhHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHh
Q psy9777 20 KIINLRSWLELSSQLPCFKSGAATVQNLKNRF-HMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 20 ~il~lvelM~~~~~lPcf~~~~~~i~~l~~Rf-~l~~s~~ea~~~v~~lI~~S~ 72 (91)
+|...|.-.+.+++|--.+. ...-..+.+|| ..++++. ..++..+|+.-+
T Consensus 16 ei~~~I~~IL~~aDL~tvT~-K~VR~~Le~~~pg~dLs~k--K~~I~~~I~~~L 66 (70)
T 1q1v_A 16 ELKETIKKLLASANLEEVTM-KQICKKVYENYPTYDLTER--KDFIKTTVKELI 66 (70)
T ss_dssp HHHHHHHHHHTTSCGGGCCH-HHHHHHHHHHCSSSCCSHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHhH-HHHHHHHHHHccCCCChHH--HHHHHHHHHHHH
Confidence 45544555555555666665 24556899999 9999954 456777776654
No 45
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=42.39 E-value=47 Score=22.29 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=25.8
Q ss_pred HHHHHHHhcCC--CCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHM--NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l--~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+ ++|.+||.+.+.+-+..+.+
T Consensus 175 a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~ 207 (246)
T 1iru_A 175 STSFLEKKVKKKFDWTFEQTVETAITCLSTVLS 207 (246)
T ss_dssp HHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhc
Confidence 44578888999 99999999999988887764
No 46
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=42.30 E-value=49 Score=22.24 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 171 a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (246)
T 1j2p_A 171 VTEFFEKEYRDDLSFDDAMVLGLVAMGLSIE 201 (246)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 4557888999999999999999988887765
No 47
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=41.62 E-value=33 Score=20.57 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHHHHhhc--CCCCC-------------CcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 20 KIINLRSWLEL--SSQLP-------------CFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 20 ~il~lvelM~~--~~~lP-------------cf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
++-.|++.|.+ +| +| ||.| .+.|..|-+++.--.+.+||..+...|++..+
T Consensus 20 ~l~~iv~~M~~p~~G-v~i~dr~~~~~~~~~~F~G-~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 20 DMSAIVRVMQLPDSG-LEIRDRMWLKITIANAVIG-ADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp CHHHHHHHHHSTTSS-SCSSCEEETTEEESSCCHH-HHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHhCCCCC-ceeEEeEeCCEECCceeEc-HHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 45678888875 34 54 5554 46788999998533789999999999988643
No 48
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=41.49 E-value=38 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
....|++++.+++|.+||.+.+.+-+.++.
T Consensus 163 a~~~Le~~y~~~mt~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 163 IANALKESYAENASLTDALRIAVAALRAGS 192 (248)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 456799999999999999999999988877
No 49
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=41.15 E-value=45 Score=22.32 Aligned_cols=31 Identities=23% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 171 a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 201 (242)
T 1ryp_E 171 AQAELLNEWHSSLTLKEAELLVLKILKQVME 201 (242)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHhh
Confidence 4557888999999999999999988887665
No 50
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=40.89 E-value=54 Score=21.35 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=24.1
Q ss_pred HHHHHHHh---------cCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNR---------FHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~R---------f~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++. +.+++|.+||.+.+.+-+..+..
T Consensus 145 a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~ 184 (213)
T 1iru_M 145 LQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184 (213)
T ss_dssp HHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34456666 67899999999999888876654
No 51
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=40.07 E-value=32 Score=22.90 Aligned_cols=31 Identities=16% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+.+
T Consensus 169 a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 199 (233)
T 1iru_B 169 GKTFLEKRYNEDLELEDAIHTAILTLKESFE 199 (233)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 4567888999999999999999888876653
No 52
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=39.66 E-value=53 Score=18.75 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCCCCCcccc--hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 31 SSQLPCFKSG--AATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 31 ~~~lPcf~~~--~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
.| +|.+... ...+..+++.-..+++++.+...+..+|+.|..
T Consensus 40 ~~-~~i~dp~RE~~vl~~~~~~~~~~l~~~~i~~if~~ii~~s~~ 83 (90)
T 2d8d_A 40 LG-LPHYDPKREEEMLAYLTAENPGPFPDETIRKLFKEIFKASLD 83 (90)
T ss_dssp HT-CCSCCHHHHHHHHHHHHHHCCSSSCHHHHHHHHHHHHHHTC-
T ss_pred CC-CCCcCHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 35 8888752 245778888777789999999999999999874
No 53
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=38.71 E-value=45 Score=21.90 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=25.6
Q ss_pred HHHHHHHhcCC--CCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHM--NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l--~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+ ++|.+||.+.+.+-+..+..
T Consensus 146 a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~ 178 (219)
T 1iru_N 146 AQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178 (219)
T ss_dssp THHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45578888999 99999999999888876654
No 54
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=36.80 E-value=69 Score=20.38 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=33.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQ 84 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ 84 (91)
..+....+-+.++-.+.++.+....++.+.........||...
T Consensus 32 ~~l~~~~~~~~lt~~d~~~l~~~~p~l~~~~~~ivd~FY~~l~ 74 (178)
T 1or4_A 32 ADVKKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKNLD 74 (178)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777776666666777788889999999999999998754
No 55
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=36.47 E-value=44 Score=20.67 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=27.0
Q ss_pred HHHhhhHHHHHHHHHHhhcCCCCCCcccchhHHHHH
Q psy9777 12 VHAALSLVKIINLRSWLELSSQLPCFKSGAATVQNL 47 (91)
Q Consensus 12 lalRk~~~~il~lvelM~~~~~lPcf~~~~~~i~~l 47 (91)
..++.|.+.+..++.=|++.| .|.-+..++.++.+
T Consensus 101 ~~I~~Nf~~vy~lLDE~id~G-~~~et~~~~il~~~ 135 (142)
T 2vgl_S 101 LDLVFNFYKVYTVVDEMFLAG-EIRETSQTKVLKQL 135 (142)
T ss_dssp HHHHHTHHHHHHHHHHHEETT-EECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCC-EEEEcCHHHHHHHH
Confidence 468999999999999999999 88876423444443
No 56
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=36.42 E-value=31 Score=21.33 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHHHH
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQ 84 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ 84 (91)
++++++-+.++-.+.+..+....++...........||...
T Consensus 4 ~~~~~~~~~lt~~d~~~l~~~~p~l~~~~~~i~~~FY~~l~ 44 (162)
T 2w31_A 4 MQEIKAHYRFTDEDAELLGSLFPLAETNKERLADQFYDYLL 44 (162)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555566677777777777777777777654
No 57
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=35.81 E-value=56 Score=21.83 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=25.2
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRF---HMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf---~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+ ++++|.+||.+.+.+-+..+.+
T Consensus 169 a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~ 202 (241)
T 1ryp_D 169 VREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ 202 (241)
T ss_dssp HHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc
Confidence 445678888 8999999999999888877654
No 58
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=35.11 E-value=67 Score=22.58 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+.+
T Consensus 211 a~~~Le~~y~~~ms~eEAi~la~~aL~~a~~ 241 (294)
T 1q5r_H 211 AKSALKKIYSPDSDEETALRAAIESLYDAAD 241 (294)
T ss_dssp HHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999988876654
No 59
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=34.45 E-value=84 Score=21.10 Aligned_cols=29 Identities=10% Similarity=0.068 Sum_probs=23.2
Q ss_pred HHHHHh---cCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 45 QNLKNR---FHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 45 ~~l~~R---f~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
..|++. +.+++|.+||.+.+.+-+..+..
T Consensus 170 ~~Le~~~~~~~~~ms~eea~~la~~al~~~~~ 201 (244)
T 1ryp_G 170 AELEKLVDHHPEGLSAREAVKQAAKIIYLAHE 201 (244)
T ss_dssp HHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGG
T ss_pred HHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 345554 88999999999999998887765
No 60
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=32.54 E-value=65 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 211 a~~~Le~~y~~dms~eEAi~la~~aL~~a~~ 241 (287)
T 3nzj_K 211 AYGVLDSNYKWDLSVEDALYLGKRSILAAAH 241 (287)
T ss_dssp HHHHHHTSCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHh
Confidence 4457888999999999999999988877663
No 61
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=32.16 E-value=41 Score=19.73 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHHHHhhchhHHHHHHH
Q psy9777 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGF 83 (91)
Q Consensus 55 ~s~~ea~~~v~~lI~~S~~~~~T~~YD~f 83 (91)
.++.+|++...+||+.--..---++||.-
T Consensus 46 kt~pqaae~ln~liegyt~geerklydsa 74 (95)
T 1xou_B 46 KTDPQAAEKLNKLIEGYTYGEERKLYDSA 74 (95)
T ss_dssp HHCHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 46789999999999987777777889874
No 62
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=30.97 E-value=26 Score=20.32 Aligned_cols=25 Identities=24% Similarity=0.174 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchhH
Q psy9777 53 MNLTEEQLQVLIDKLVDSSIHSLST 77 (91)
Q Consensus 53 l~~s~~ea~~~v~~lI~~S~~~~~T 77 (91)
-++|.+||.+....+|++-..+|.+
T Consensus 62 ~gms~eeA~~~YI~~v~~l~~~~~~ 86 (86)
T 1st7_A 62 KGKSQEDAEKEYIALVDQLIAKYSS 86 (86)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhhcC
Confidence 5899999999999999988877753
No 63
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=30.73 E-value=56 Score=25.36 Aligned_cols=28 Identities=0% Similarity=0.249 Sum_probs=23.1
Q ss_pred hHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 42 ATVQ-NLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 42 ~~i~-~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
+.|. ++++. +.|+++|.+++.++|+++.
T Consensus 462 s~V~cYMke~---GvSeEeA~~~i~~~Ie~~w 490 (550)
T 3m00_A 462 TGIECCMRDY---GISTKEAMAKFQNMAETAW 490 (550)
T ss_dssp SHHHHHHHHH---TCCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhc---CCCHHHHHHHHHHHHHHHH
Confidence 4555 67776 7999999999999999874
No 64
>2veb_A Protoglobin; hemoprotein structure, protein matrix tunnels, methanogenesis, archaea protein, transport protein; HET: HEM; 1.30A {Methanosarcina acetivorans} PDB: 2vee_A* 3r0g_A* 3qzz_A* 3qzx_A*
Probab=30.65 E-value=67 Score=21.67 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=31.3
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhchhHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDG 82 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~~T~~YD~ 82 (91)
.+++.+++++.+.--|++..+.+...+.+-.+.....+||.
T Consensus 23 ~~le~Lk~~~~fTeeD~~~L~~l~~~l~~~~de~vD~FY~y 63 (195)
T 2veb_A 23 EDLKLLKEAVMFTAEDEEYIQKAGEVLEDQVEEILDTWYGF 63 (195)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67889999988877777777777777777777666666665
No 65
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=30.54 E-value=71 Score=21.72 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQNLKNRFHM-NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~~l~~Rf~l-~~s~~ea~~~v~~lI~~S~~ 73 (91)
.....|++.+.+ ++|.+||.+.+.+-+..+.+
T Consensus 170 ~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~ 202 (261)
T 1iru_C 170 AAVSMLKQDYKEGEMTLKSALALAIKVLNKTMD 202 (261)
T ss_dssp HHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Confidence 355678889999 99999999999988877654
No 66
>1g8q_A CD81 antigen, extracellular domain; alpha helical, immune system; 1.60A {Homo sapiens} SCOP: a.135.1.1 PDB: 1iv5_A
Probab=30.41 E-value=72 Score=17.53 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q psy9777 77 TKLYDGFQYY 86 (91)
Q Consensus 77 T~~YD~fQ~~ 86 (91)
+...|.+|.-
T Consensus 32 ~~~~d~iQ~~ 41 (90)
T 1g8q_A 32 KAVVKTFHET 41 (90)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6778888864
No 67
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=30.12 E-value=40 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.108 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
...|++.+.+++|.+||.+.+.+-+..+.+
T Consensus 177 ~~~Le~~~~~~ms~eea~~la~~al~~a~~ 206 (264)
T 3h4p_A 177 MELLEKEYRDDITLDEGLELAITALTKANE 206 (264)
T ss_dssp TTTHHHHCCTTCCSHHHHHHHHHHHHHHSS
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence 346888999999999999999998887775
No 68
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=30.05 E-value=49 Score=19.42 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCCCCcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy9777 23 NLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 23 ~lvelM~~~~~lPcf~~~~~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
.+|.+|..-..++-=.=-.+.+..++.||.| +.....+-++.||++
T Consensus 27 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p--~~~~IKk~IE~LIek 72 (88)
T 3o2p_E 27 CIVRIMKAKRNLPHTTLVNECIAQSHQRFNA--KVSMVKRAIDSLIQK 72 (88)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHHHT
T ss_pred eeehhhcccccccHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHhh
Confidence 6788887654221100002577889999987 455677778888875
No 69
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=29.26 E-value=45 Score=21.02 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=13.5
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
=|+|++.++..+.-. +| -|++.
T Consensus 50 E~~HA~~l~~~i~~~--gg-~~~l~ 71 (165)
T 1eum_A 50 EMTHMQRLFDYLTDT--GN-LPRIN 71 (165)
T ss_dssp HHHHHHHHHHHHHHT--TC-CCCCC
T ss_pred HHHHHHHHHHHHHHc--CC-CcccC
Confidence 457787777766653 33 56654
No 70
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=29.14 E-value=57 Score=20.87 Aligned_cols=22 Identities=0% Similarity=-0.094 Sum_probs=11.6
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
=|+|+++++..+ ..-|..|++.
T Consensus 49 E~~HA~kl~~~i---~~rgg~~~l~ 70 (168)
T 3e6s_A 49 EREHGLGFVDFA---NKRNIPIELQ 70 (168)
T ss_dssp HHHHHHHHHHHH---HHTTCCCCCC
T ss_pred HHHHHHHHHHHH---HHcCCccccC
Confidence 456666666544 3333256654
No 71
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=28.87 E-value=62 Score=22.73 Aligned_cols=31 Identities=3% Similarity=-0.025 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++|.+||.+.+.+-+..+..
T Consensus 203 a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~ 233 (291)
T 2jay_A 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAAD 233 (291)
T ss_dssp HHHHHHHHGGGCCSHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4557888999999999999999988876554
No 72
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=27.24 E-value=51 Score=14.84 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=11.7
Q ss_pred HHHHhhHHHHhhhHHHHH
Q psy9777 5 MFTGYFGVHAALSLVKII 22 (91)
Q Consensus 5 ~~~gf~~lalRk~~~~il 22 (91)
.+.|. +.+||+.+.+-
T Consensus 2 lvsgl--iearkyleqlh 17 (26)
T 1xkm_B 2 LVSGL--IEARKYLEQLH 17 (26)
T ss_dssp HHHHH--HHHHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHH
Confidence 36778 88898877653
No 73
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=26.92 E-value=63 Score=21.45 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=25.3
Q ss_pred HHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHM-----NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l-----~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.. ++|.+||.+.+.+-+..+..
T Consensus 151 a~~~Le~~~~~~~~~~~ms~eea~~la~~al~~~~~ 186 (233)
T 1ryp_N 151 ANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 186 (233)
T ss_dssp HHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 45578888888 99999999999888876654
No 74
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=26.83 E-value=1.2e+02 Score=19.82 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=18.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 51 FHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 51 f~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
..+++|.+||.+.+.+-+..+..
T Consensus 171 ~~~~~s~eeA~~la~~al~~a~~ 193 (222)
T 1ryp_M 171 PLKYLSVEEVIKLVRDSFTSATE 193 (222)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Confidence 67899999999998887776553
No 75
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=26.53 E-value=47 Score=19.09 Aligned_cols=27 Identities=7% Similarity=0.251 Sum_probs=20.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDS 70 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~ 70 (91)
=++..+-+.|.+ +++++++.+.++|.+
T Consensus 31 Isl~~La~ll~l--s~~~vE~~ls~mI~~ 57 (84)
T 1ufm_A 31 ITFEELGALLEI--PAAKAEKIASQMITE 57 (84)
T ss_dssp EEHHHHHHHTTS--CHHHHHHHHHHHHHT
T ss_pred eeHHHHHHHHCc--CHHHHHHHHHHHHhC
Confidence 356677777664 699999999999874
No 76
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=26.36 E-value=55 Score=22.67 Aligned_cols=21 Identities=5% Similarity=0.104 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhc
Q psy9777 54 NLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~S~~~ 74 (91)
+.|+++|.+++.++|+++...
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~ 265 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQ 265 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 789999999999999877654
No 77
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=26.31 E-value=55 Score=20.33 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=12.7
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
=++|++.+...+--. +| .|.+.
T Consensus 51 E~~HA~~l~~~i~~l--GG-~p~~~ 72 (159)
T 4am5_A 51 EMAHADKFVERILFL--EG-LPNLQ 72 (159)
T ss_dssp HHHHHHHHHHHHHHT--TC-CCCCS
T ss_pred HHHHHHHHHHHHHhC--CC-CCccc
Confidence 457777776554333 33 66665
No 78
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=26.03 E-value=66 Score=21.51 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHM-------NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l-------~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|.+.+.+ ++|.+||.+.+.+-+..+..
T Consensus 169 a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~ 206 (243)
T 1ryp_A 169 ITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALG 206 (243)
T ss_dssp HHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhc
Confidence 34467777777 99999999999998887764
No 79
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=25.90 E-value=61 Score=18.82 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhcCCCCCCcccchh--HHH---HHHH-hcCCCCCHHHHHHHHHHHHHHHhhchh
Q psy9777 19 VKIINLRSWLELSSQLPCFKSGAA--TVQ---NLKN-RFHMNLTEEQLQVLIDKLVDSSIHSLS 76 (91)
Q Consensus 19 ~~il~lvelM~~~~~lPcf~~~~~--~i~---~l~~-Rf~l~~s~~ea~~~v~~lI~~S~~~~~ 76 (91)
+..+.|-.+-.++..=||-...|. ++. +... .-.-++|.+||.+....+|++-...|.
T Consensus 25 ~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~~ 88 (89)
T 1hbk_A 25 ELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYWQ 88 (89)
T ss_dssp HHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccccc
Confidence 666666666655421244432221 111 1111 222579999999999999998877764
No 80
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=25.89 E-value=52 Score=21.09 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=12.0
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
=|+|+++++..+... |..|++.
T Consensus 52 E~~HA~~l~~~i~~~---gg~~~l~ 73 (173)
T 1s3q_A 52 ELMHAMKMFDFVSER---GGRVKLY 73 (173)
T ss_dssp HHHHHHHHHHHHHHT---TCCCCCC
T ss_pred HHHHHHHHHHHHHHc---CCCcccC
Confidence 356666666555433 3366664
No 81
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=25.81 E-value=55 Score=21.29 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=12.2
Q ss_pred HHhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 13 HAALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 13 alRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
.-|+|+++++..+. .-|..|++.
T Consensus 58 EE~~HA~~l~~~i~---~~Gg~~~l~ 80 (184)
T 3qz3_A 58 EEMQHMQRLFTYVS---ETGALPILG 80 (184)
T ss_dssp HHHHHHHHHHHHHH---HTTCCCCCC
T ss_pred HHHHHHHHHHHHHH---HCCCCcccC
Confidence 34566666655443 333366665
No 82
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=25.77 E-value=58 Score=22.06 Aligned_cols=31 Identities=10% Similarity=0.001 Sum_probs=22.5
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
+.|.-+.+-. +.|+++|.+++.++|+++...
T Consensus 229 n~V~~~m~~~--g~s~eeA~~~~~~~i~~~~~~ 259 (300)
T 1di1_A 229 SAVKVLAEES--KLGIPATKRVLWSMTREWETV 259 (300)
T ss_dssp CHHHHHHHHH--TCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 4555444322 789999999999999887643
No 83
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=25.68 E-value=1.4e+02 Score=20.86 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=25.3
Q ss_pred HHHHHHh---cCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 44 VQNLKNR---FHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 44 i~~l~~R---f~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
...|.+. ..+++|.+||.+.+.+.+..+.+.
T Consensus 173 ~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~ 206 (288)
T 3nzj_F 173 KAELEKLVDHHPEGLSAREAVKQAAKIIYLAHED 206 (288)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3456666 789999999999999998877653
No 84
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=25.32 E-value=1.2e+02 Score=19.19 Aligned_cols=24 Identities=4% Similarity=-0.175 Sum_probs=15.3
Q ss_pred HHHhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 12 VHAALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 12 lalRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
...+.|++.+...+... +| .|+++
T Consensus 62 ~EE~~HAd~l~eri~~l--Gg-~~~l~ 85 (176)
T 1vlg_A 62 QEELTHAMKFYEYIYER--GG-RVELE 85 (176)
T ss_dssp HHHHHHHHHHHHHHHHT--TC-CCCCC
T ss_pred HHHHHHHHHHHHHHHHc--CC-CeecC
Confidence 45778888888776654 33 45544
No 85
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=25.20 E-value=56 Score=24.35 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=23.4
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhch
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSL 75 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~~ 75 (91)
+.|.-+.+. .+.|++||.+++.++|++++..|
T Consensus 355 N~V~~~mke--~g~S~eeA~~~v~~~i~~~~~~F 386 (433)
T 3v1v_A 355 NLPVVIAER--EQLCERDAYLKAVEVHNELQHSF 386 (433)
T ss_dssp CHHHHHHHH--HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHHH
Confidence 455543332 27999999999999999887654
No 86
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=25.13 E-value=61 Score=21.01 Aligned_cols=19 Identities=11% Similarity=-0.010 Sum_probs=15.9
Q ss_pred HHHHhhHHHHhhhHHHHHHHH
Q psy9777 5 MFTGYFGVHAALSLVKIINLR 25 (91)
Q Consensus 5 ~~~gf~~lalRk~~~~il~lv 25 (91)
.++|| ||-|+|-..|-.+.
T Consensus 54 tvR~~--L~rkkhkPRi~g~~ 72 (148)
T 3gn4_A 54 TIRMW--LCKRRHKPRIDGLV 72 (148)
T ss_dssp HHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHhhhhHHHHHH
Confidence 57899 99999999977663
No 87
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=25.07 E-value=72 Score=19.00 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhchh
Q psy9777 53 MNLTEEQLQVLIDKLVDSSIHSLS 76 (91)
Q Consensus 53 l~~s~~ea~~~v~~lI~~S~~~~~ 76 (91)
=++|.+||.+...++|++-...|.
T Consensus 72 ~gmS~eeAm~~YI~lv~~l~~~~~ 95 (96)
T 2lbb_A 72 RGMSTESAKEAYVKLLDTLAPSWR 95 (96)
T ss_dssp TTCCHHHHHHHHHHHHHHHCGGGT
T ss_pred cCCCHHHHHHHHHHHHHHHhchhc
Confidence 579999999999999998887774
No 88
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=24.82 E-value=60 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhch
Q psy9777 54 NLTEEQLQVLIDKLVDSSIHSL 75 (91)
Q Consensus 54 ~~s~~ea~~~v~~lI~~S~~~~ 75 (91)
+.|++||.+++.++|+++...+
T Consensus 287 g~s~eeA~~~v~~~i~~~~k~~ 308 (382)
T 3kb9_A 287 SLTLEEAIGEVRRRVEECITEF 308 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999876544
No 89
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=24.65 E-value=68 Score=20.29 Aligned_cols=27 Identities=7% Similarity=-0.103 Sum_probs=24.0
Q ss_pred HHHhhhHHHHHHHHHHhhcCCCCCCccc
Q psy9777 12 VHAALSLVKIINLRSWLELSSQLPCFKS 39 (91)
Q Consensus 12 lalRk~~~~il~lvelM~~~~~lPcf~~ 39 (91)
..++.|.+.+..++.=|++.| .|.-+.
T Consensus 101 ~~I~~Nf~~vy~lLDE~id~G-~~~eT~ 127 (158)
T 1w63_Q 101 LDIIFNFEKAYFILDEFLMGG-DVQDTS 127 (158)
T ss_dssp HHHHHHHHHHHHHHHTTEETT-EESCCC
T ss_pred HHHHHhHHHHHHHHHHHHhCC-EEEecC
Confidence 468999999999999999999 888765
No 90
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=24.49 E-value=62 Score=21.23 Aligned_cols=22 Identities=0% Similarity=-0.254 Sum_probs=11.5
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
=|+|+++++..+ ..-|..|++.
T Consensus 55 E~~HA~~l~~~i---~~rGG~~~l~ 76 (189)
T 3uno_A 55 ERNHAMMLVQHL---LDRDLRVEIP 76 (189)
T ss_dssp HHHHHHHHHHHH---HHTTCCCCCC
T ss_pred HHHHHHHHHHHH---HhCCCCcccC
Confidence 346666655444 3333366664
No 91
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=23.99 E-value=76 Score=24.62 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=23.4
Q ss_pred hHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQ-NLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~-~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
+.|. ++++. +.|+++|.+++.++|+++..
T Consensus 465 s~V~cYMke~---GvSeEeA~~~i~~~Ie~~wK 494 (555)
T 3n0f_A 465 NSVSCYMRTK---GISEELATESVMNLIDETWK 494 (555)
T ss_dssp SHHHHHHHHH---TCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHc---CCCHHHHHHHHHHHHHHHHH
Confidence 4555 67776 89999999999999998743
No 92
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=23.85 E-value=83 Score=24.23 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.0
Q ss_pred hHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 42 ATVQ-NLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 42 ~~i~-~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
+.|. ++++. +.|++||.+++.++|+++...
T Consensus 463 n~V~cyMke~---g~s~eeA~~~i~~~i~~~wk~ 493 (549)
T 1n1b_A 463 KTIQCYMKET---NASEEEAVEHVKFLIREAWKD 493 (549)
T ss_dssp CHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHH
Confidence 4454 66776 789999999999999988653
No 93
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=23.60 E-value=59 Score=22.05 Aligned_cols=31 Identities=6% Similarity=0.029 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHhhc
Q psy9777 44 VQNLKNRFHMNLTEEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 44 i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~~~ 74 (91)
...|++...+++|.+||.+.+.+.+..+.+.
T Consensus 173 ~~~Le~~~~~~ms~eea~~la~~al~~~~~~ 203 (254)
T 1iru_G 173 KTEIEKLQMKEMTCRDIVKEVAKIIYIVHDE 203 (254)
T ss_dssp HHHHTTSCGGGCCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhh
Confidence 3456666688999999999999998877653
No 94
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum}
Probab=23.14 E-value=1.7e+02 Score=20.67 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHhcC
Q psy9777 56 TEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNGI 90 (91)
Q Consensus 56 s~~ea~~~v~~lI~~S~~~~~T~~YD~fQ~~tnGI 90 (91)
++++.++.+.+.|.+.=+.+-+.+=+.||.+..+-
T Consensus 216 ~~~~~a~~iv~~I~~~E~~~q~~l~~~~~~ls~~t 250 (281)
T 4akr_A 216 DAQSTAVNAFKAIGKAELNLHTALDNNYSTMGDTT 250 (281)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 56788899999999999999999999999998653
No 95
>3rko_K NADH-quinone oxidoreductase subunit K; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=23.09 E-value=79 Score=18.48 Aligned_cols=27 Identities=11% Similarity=0.045 Sum_probs=20.8
Q ss_pred HHHHhhHHHHhhhHHHHHHHHHHhhcC
Q psy9777 5 MFTGYFGVHAALSLVKIINLRSWLELS 31 (91)
Q Consensus 5 ~~~gf~~lalRk~~~~il~lvelM~~~ 31 (91)
++-|.+|+..|||.=.++--+|.|..+
T Consensus 15 f~iGl~g~~~r~~ll~~LlslE~m~l~ 41 (100)
T 3rko_K 15 FVLGLTGLVIRRNLLFMLIGLEIMINA 41 (100)
T ss_dssp HHHHHHHHHHCCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666799999999999999665
No 96
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=22.89 E-value=82 Score=21.53 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=25.3
Q ss_pred HHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHM-----NLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l-----~~s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.. ++|.+||.+.+.+-+..+..
T Consensus 184 a~~~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~ 219 (266)
T 1g0u_M 184 ANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYY 219 (266)
T ss_dssp HHHHHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 44578888888 99999999999988876654
No 97
>3kfu_G Glutamyl-tRNA(Gln) amidotransferase subunit C; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=22.41 E-value=1.2e+02 Score=17.51 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=21.9
Q ss_pred hhHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy9777 41 AATVQNLKNRFHMNLTEEQLQVLIDKL 67 (91)
Q Consensus 41 ~~~i~~l~~Rf~l~~s~~ea~~~v~~l 67 (91)
++.|..+-.=-+++++++|...+..+|
T Consensus 8 ~e~V~~iA~LArL~l~eeE~~~~~~~l 34 (92)
T 3kfu_G 8 PELLRKLETLAKIRLSPEEEALLLQDL 34 (92)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 378999999899999999987766543
No 98
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=22.15 E-value=87 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=23.5
Q ss_pred hHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 42 ATVQ-NLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 42 ~~i~-~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
+.|. ++++. +.|++||.+++.++|+++..
T Consensus 467 n~V~cYMke~---GvSeEeA~~~i~~~Ie~~wK 496 (554)
T 3g4d_A 467 SAIECYMEEY---GVTAQEAYDVFNKHVESAWK 496 (554)
T ss_dssp CHHHHHHHHH---TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHHHH
Confidence 4555 67776 79999999999999998743
No 99
>1lbj_A Motilin; A-helix, B-turn of type I, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=21.95 E-value=58 Score=14.89 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=9.9
Q ss_pred CCCcccchhHHHHHHHh
Q psy9777 34 LPCFKSGAATVQNLKNR 50 (91)
Q Consensus 34 lPcf~~~~~~i~~l~~R 50 (91)
.|-|+. .+++.+++|
T Consensus 2 vPiFt~--selqr~qEk 16 (26)
T 1lbj_A 2 VPIFTY--GELQRMQEK 16 (26)
T ss_dssp CCTTCH--HHHHHHHHH
T ss_pred CceeeH--HHHHHHHHH
Confidence 577876 566666654
No 100
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=21.33 E-value=1.2e+02 Score=16.78 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=20.8
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKLV 68 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~lI 68 (91)
..|.++.+.|...+|++|...-+.-|.
T Consensus 52 ~~v~~M~~~~g~~ls~~e~~~I~~YL~ 78 (81)
T 2blf_B 52 AEVQKMIKVYHAPVDEADAKAIADYLA 78 (81)
T ss_dssp HHHHHHHHTSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 567888888988999999776665553
No 101
>3h0l_C Glutamyl-tRNA(Gln) amidotransferase subunit C; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_C 3h0r_C*
Probab=21.15 E-value=1.3e+02 Score=17.38 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=20.9
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHH
Q psy9777 42 ATVQNLKNRFHMNLTEEQLQVLIDKL 67 (91)
Q Consensus 42 ~~i~~l~~Rf~l~~s~~ea~~~v~~l 67 (91)
+.|..+-.=-+++++++|...+..+|
T Consensus 5 e~v~~iA~LArL~l~eee~~~~~~~l 30 (94)
T 3h0l_C 5 EWVLKIAKLARLELKEEEIEVFQKQL 30 (94)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 67888888889999999987766543
No 102
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=21.05 E-value=96 Score=15.75 Aligned_cols=14 Identities=36% Similarity=0.311 Sum_probs=9.9
Q ss_pred CCCHHHHHHHHHHH
Q psy9777 54 NLTEEQLQVLIDKL 67 (91)
Q Consensus 54 ~~s~~ea~~~v~~l 67 (91)
++||+||+++=.-.
T Consensus 2 gLT~~EA~EfH~~~ 15 (41)
T 1nkz_B 2 TLTAEQSEELHKYV 15 (41)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 68999988754433
No 103
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=20.93 E-value=81 Score=21.50 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHHh
Q psy9777 43 TVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72 (91)
Q Consensus 43 ~i~~l~~Rf~l~~s~~ea~~~v~~lI~~S~ 72 (91)
....|++++.+++|.+||.+.+.+-+..+.
T Consensus 163 a~~~Le~~~~~~ms~eea~~la~~al~~~~ 192 (259)
T 1q5q_A 163 IATAMRESYRADLDLEAAVGIAVNALRQGG 192 (259)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHHHHh
Confidence 355788899999999999999888776554
No 104
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=20.49 E-value=90 Score=15.25 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=15.9
Q ss_pred HHHhc-CCCCCHHHHHHHHHHHHH
Q psy9777 47 LKNRF-HMNLTEEQLQVLIDKLVD 69 (91)
Q Consensus 47 l~~Rf-~l~~s~~ea~~~v~~lI~ 69 (91)
|-+-+ .+++||++-..++..|=+
T Consensus 9 FYevLh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 9 FYEALHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHhHHHHHhc
Confidence 33433 468899998888877644
No 105
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=20.39 E-value=74 Score=21.41 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCC--CHHHHHHHHHHHHHHHhh
Q psy9777 43 TVQNLKNRFHMNL--TEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 43 ~i~~l~~Rf~l~~--s~~ea~~~v~~lI~~S~~ 73 (91)
....|++.+.+++ |.+||.+.+.+-+..+.+
T Consensus 168 a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~ 200 (248)
T 1iru_D 168 VREFLEKNYTDEAIETDDLTIKLVIKALLEVVQ 200 (248)
T ss_dssp HHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccccCCHHHHHHHHHHHHHHHHc
Confidence 4557888889999 999999998888876554
No 106
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=20.38 E-value=1.1e+02 Score=23.55 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhh
Q psy9777 46 NLKNRFHMNLTEEQLQVLIDKLVDSSIH 73 (91)
Q Consensus 46 ~l~~Rf~l~~s~~ea~~~v~~lI~~S~~ 73 (91)
+++++ +.|+++|.+++.++|+++..
T Consensus 461 yMke~---g~s~eeA~~~i~~~ie~~wk 485 (543)
T 2ong_A 461 YMSDY---NASEAEARKHVKWLIAEVWK 485 (543)
T ss_dssp HHHHT---CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHc---CCCHHHHHHHHHHHHHHHHH
Confidence 45555 78999999999999998865
No 107
>2wjv_D Regulator of nonsense transcripts 2; hydrolase, zinc-finger, ATP-binding, RNA-binding, nonsense-M mRNA decay, nucleotide-binding, metal-binding; 2.85A {Homo sapiens}
Probab=20.36 E-value=90 Score=18.49 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy9777 57 EEQLQVLIDKLVDSSIHS 74 (91)
Q Consensus 57 ~~ea~~~v~~lI~~S~~~ 74 (91)
|+|..+.+++++.+|+.+
T Consensus 9 d~eFdre~~kmm~eS~~s 26 (97)
T 2wjv_D 9 DEDFIQALDKMMLENLQQ 26 (97)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567889999999999876
No 108
>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...
Probab=20.08 E-value=71 Score=20.40 Aligned_cols=22 Identities=5% Similarity=0.152 Sum_probs=12.3
Q ss_pred HhhhHHHHHHHHHHhhcCCCCCCcc
Q psy9777 14 AALSLVKIINLRSWLELSSQLPCFK 38 (91)
Q Consensus 14 lRk~~~~il~lvelM~~~~~lPcf~ 38 (91)
=|+|+++++..+... +| .|++.
T Consensus 58 E~~HA~~l~~~i~~r--gg-~~~l~ 79 (174)
T 2v2p_A 58 KMQGAERLLKMQNQR--GG-RALFQ 79 (174)
T ss_dssp HHHHHHHHHHHHHHH--TC-CCCCC
T ss_pred HHHHHHHHHHHHHHc--CC-ccccC
Confidence 456777766555443 23 55554
Done!