RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9777
(91 letters)
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide
3-kinase gamma, secondary messenger generation, PI3K, PI
3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP:
a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A*
1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A*
3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A*
3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Length = 961
Score = 72.2 bits (176), Expect = 1e-16
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 20 KIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKL 79
+I L S + L + +P ++ +++ + +EE + ++ T
Sbjct: 885 LLIILFS-MMLMTGMPQLT-SKEDIEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQ 942
Query: 80 YDGFQYYTNGI 90
++ F + GI
Sbjct: 943 FNWFLHLVLGI 953
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase;
2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A*
2x6j_A* 2x6k_A*
Length = 696
Score = 66.0 bits (160), Expect = 2e-14
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 20 KIINLRSWLELSSQLPCFKS-GAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTK 78
++NL S L + + +P V+ ++ + LT+E+ + L+D SI ++
Sbjct: 624 VMLNLFS-LMVDATVPDIALEPDKAVKKVEENLQLGLTDEEAVQHLQSLLDVSITAVMPA 682
Query: 79 LYDGFQYYTNG 89
L + +T
Sbjct: 683 LVEQIHRFTQY 693
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit
alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol
3,4,5- triphosphate, wortmannin, H1047R, ATP-binding,
disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens}
PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Length = 1091
Score = 66.0 bits (160), Expect = 2e-14
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 20 KIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQ-LQVLIDKLVDSSIHSLSTK 78
INL S + L S +P +S + ++ ++ TE++ L+ + ++ D+ +TK
Sbjct: 1020 LFINLFS-MMLGSGMPELQSFD-DIAYIRKTLALDKTEQEALEYFMKQMNDARHGGWTTK 1077
Query: 79 LYDGFQYYTNGIL 91
+ F L
Sbjct: 1078 MDWIFHTIKQHAL 1090
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 61.4 bits (148), Expect = 8e-13
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 20 KIINLRSWLELSSQLPCFKS-GAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTK 78
I+NL S L + + +P TV+ ++++F ++L++E+ + L+D S+H+L
Sbjct: 550 LILNLFS-LMVDANIPDIALEPDKTVKKVQDKFRLDLSDEEAVHYMQSLIDESVHALFAA 608
Query: 79 LYDGFQ 84
+ +
Sbjct: 609 VVEQIH 614
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 53.4 bits (127), Expect = 4e-10
Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 20 KIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI-HSLSTK 78
I L + L L++ LP +Q LK+ + +EE+ + D ++ S +TK
Sbjct: 1021 LFITLFA-LMLTAGLPELT-SVKDIQYLKDSLALGKSEEEALKQFKQKFDEALRESWTTK 1078
Query: 79 LYDGFQYYTNGI 90
+
Sbjct: 1079 VNWMAHTVRKDY 1090
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta
isoform; transferase, phosphoprotein, isoform-specific
inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A*
2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A*
2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Length = 940
Score = 51.8 bits (123), Expect = 2e-09
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 20 KIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLV-DSSIHSLSTK 78
++L + L ++ LP + +Q LK+ + TEE+ ++ S TK
Sbjct: 869 LFLHLFA-LMRAAGLPELS-CSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTK 926
Query: 79 LYDGFQYYTNGI 90
+ +
Sbjct: 927 VNWLAHNVSKDN 938
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.070
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 17/76 (22%)
Query: 17 SLVKIINLRSWLELSSQL--PCFKSGAATVQ-NLKNRF----HM----NLTEEQLQVLID 65
S+ K I + ++ + P + ++ +L+N M NLT+EQ+Q ++
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 66 KL-----VDSSIH-SL 75
K + SL
Sbjct: 355 KTNSHLPAGKQVEISL 370
Score = 25.8 bits (56), Expect = 2.4
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 8 GYFGVHAALSLVKIINLRSWL--ELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLID 65
+ + + +V R + +S + R + ++E LQ +++
Sbjct: 1775 DVMSIESLVEVVFY---RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 66 KL 67
++
Sbjct: 1832 RV 1833
Score = 25.8 bits (56), Expect = 2.6
Identities = 6/30 (20%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 55 LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQ 84
L+ L+ ++ LV ++ ++++L + F
Sbjct: 11 LSHGSLEHVL--LVPTASFFIASQLQEQFN 38
Score = 25.8 bits (56), Expect = 2.7
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 22 INLRSWLELSSQLP 35
+N+ WLE S P
Sbjct: 213 LNILEWLENPSNTP 226
>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A
{Bombyx mori}
Length = 216
Score = 28.3 bits (64), Expect = 0.26
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 23 NLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTE 57
N++ W++ LP + + N+ +
Sbjct: 182 NIQRWIKDCLLLPGAPENEDGARTFGDAVKKNIKQ 216
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 26.5 bits (59), Expect = 1.2
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 38 KSGAATVQNLKNRFHMNLTEEQLQVLIDKLVD 69
+G A+V+ L+ Q V ++ L +
Sbjct: 421 TNGTASVKPLRGTGDDGEKSVQQSVPVESLTE 452
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin
binding, STAM2, structural genomics, NPPSFA; NMR {Homo
sapiens} PDB: 2l0t_B
Length = 163
Score = 25.3 bits (55), Expect = 2.7
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 13 HAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72
+++K +N + L A V N FH+ + + ++ +
Sbjct: 52 DCLKAIMKRVNHKVPHV---ALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKA 108
Query: 73 H 73
H
Sbjct: 109 H 109
>1a4i_A Methylenetetrahydrofolate dehydrogenase /
methenyltetrahydrofolate cyclohydrolase...; THF,
bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo
sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A*
1dig_A*
Length = 301
Score = 24.8 bits (55), Expect = 4.4
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 54 NLTEEQLQVLIDKL-VDSSIH 73
TE ++ I L DS++H
Sbjct: 75 TTTESEVMKYITSLNEDSTVH 95
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm;
oxidoreductase, hydrolase, leishmaniasis; 2.70A
{Leishmania major}
Length = 300
Score = 24.4 bits (54), Expect = 5.7
Identities = 7/21 (33%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 54 NLTEEQLQVLIDKL-VDSSIH 73
++++E L+V ++KL D + H
Sbjct: 77 DISQEVLEVNVEKLNNDPNCH 97
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 24.1 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 47 LKNRFHMNLTEEQLQVLIDK 66
LK NL + QLQ ++DK
Sbjct: 101 LKMMVGNNLKDTQLQQIVDK 120
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 24.3 bits (53), Expect = 7.0
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 47 LKNRFHMNLTEEQLQVLIDKL 67
L+ +N+++EQL + D+
Sbjct: 139 LRMMVGVNISDEQLGSIADRT 159
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 24.1 bits (53), Expect = 8.3
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 32 SQLPCFKSGAATVQ 45
LP F+ G TVQ
Sbjct: 218 HALPGFEDGWVTVQ 231
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding,
cytoplasm, UBL conjugation, endosome, membrane, protein
transport, SH3 domain; 2.60A {Homo sapiens}
Length = 140
Score = 23.7 bits (51), Expect = 10.0
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 13 HAALSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSI 72
S+++ +N + + A V N FH+ + + +++
Sbjct: 42 DCLRSIMRRVNHKDPHV---AMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH 98
Query: 73 HSLSTKL 79
+ KL
Sbjct: 99 PKVCEKL 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.396
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,304,145
Number of extensions: 57562
Number of successful extensions: 301
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 21
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.4 bits)