RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9777
         (91 letters)



>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
           catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 369

 Score = 67.0 bits (163), Expect = 2e-15
 Identities = 9/61 (14%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 30  LSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLYDGFQYYTNG 89
           L + +P   S    ++ +++   +  +EE  +      ++       T  ++ F +   G
Sbjct: 310 LMTGMPQLTSKE-DIEYIRDALTVGKSEEDAKKYFLDQIEVCRDKGWTVQFNWFLHLVLG 368

Query: 90  I 90
           I
Sbjct: 369 I 369


>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A
          chain, domains 1 and 2 {Pseudomonas putida [TaxId:
          303]}
          Length = 84

 Score = 24.1 bits (52), Expect = 1.6
 Identities = 3/28 (10%), Positives = 14/28 (50%)

Query: 42 ATVQNLKNRFHMNLTEEQLQVLIDKLVD 69
           ++  ++    + ++++  + L+  L D
Sbjct: 38 MSIARMQVMHGLQISDDDRRTLVKYLAD 65


>d1gyxa_ d.80.1.1 (A:) 4-oxalocrotonate tautomerase homologue YdcE
          {Escherichia coli [TaxId: 562]}
          Length = 76

 Score = 24.0 bits (52), Expect = 1.7
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 54 NLTEEQLQVLIDKLVDSSIHSL 75
           L E+Q   L   + D  I  L
Sbjct: 11 ELDEQQKAALAADITDVIIRHL 32


>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2,
           NQO2 {Thermus thermophilus [TaxId: 274]}
          Length = 178

 Score = 24.7 bits (53), Expect = 1.7
 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 27  WLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVLIDKL 67
             ++     C  +    V +    +   +T  +L+ L+  L
Sbjct: 117 VQKVECLGSCHTAPVIQVND--EPYVECVTRARLEALLAGL 155


>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 175

 Score = 24.3 bits (53), Expect = 2.5
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 12/49 (24%)

Query: 22 INLRSWLELSSQL--P-----CFKSGAATVQ-----NLKNRFHMNLTEE 58
          IN+  WL+ +  L  P     C   G  TV      N +  +H+N T E
Sbjct: 7  INIDKWLKENEGLLKPPVNNYCLHKGGFTVMIVGGPNERTDYHINPTPE 55


>d2aala1 d.80.1.6 (A:1-129) Malonate semialdehyde decarboxylase,
          MSAD {Pseudomonas pavonaceae [TaxId: 47881]}
          Length = 129

 Score = 24.0 bits (52), Expect = 2.7
 Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 2/38 (5%)

Query: 50 RFHMN--LTEEQLQVLIDKLVDSSIHSLSTKLYDGFQY 85
          +F +    T+ Q++ L+D    + + +      D +Q 
Sbjct: 4  KFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQT 41


>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 106

 Score = 23.7 bits (51), Expect = 2.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 53 MNLTEEQLQVLIDKLVDSSIH 73
          M L  EQLQ+L+++ ++  ++
Sbjct: 62 MRLGREQLQILLEQNINERLN 82


>d1vkma_ c.138.1.1 (A:) Hypothetical protein TM1464 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 292

 Score = 23.7 bits (51), Expect = 3.9
 Identities = 7/29 (24%), Positives = 16/29 (55%)

Query: 41 AATVQNLKNRFHMNLTEEQLQVLIDKLVD 69
           A +  LK +    ++EE+L+ ++ +  D
Sbjct: 56 LAVIGILKGKIVAGMSEEELEAMMREGAD 84


>d1uasa2 c.1.8.1 (A:1-273) Melibiase {Rice (Oryza sativa) [TaxId:
          4530]}
          Length = 273

 Score = 23.6 bits (50), Expect = 4.8
 Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 49 NRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY---DGFQYYTN 88
          N F+  + E+ ++   D LV++ +  L  +     D +  Y+ 
Sbjct: 17 NHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSR 59


>d1w5ra1 d.3.1.5 (A:3-275) Arylamine N-acetyltransferase
           {Mycobacterium smegmatis [TaxId: 1772]}
          Length = 273

 Score = 23.4 bits (50), Expect = 4.8
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 37  FKSGAATVQNLKNRFHMNLTEEQLQVLIDKLVD 69
           F S A  +  + NRF ++L +   + +  ++ +
Sbjct: 237 FDSAAQVLDAIVNRFGIDLGDLAGRDVQARVAE 269


>d1szna2 c.1.8.1 (A:1-314) Melibiase {Trichoderma reesei [TaxId:
          51453]}
          Length = 314

 Score = 23.3 bits (49), Expect = 5.3
 Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 3/43 (6%)

Query: 49 NRFHMNLTEEQLQVLIDKLVDSSIHSLSTKLY---DGFQYYTN 88
          N +H ++ E +     + +V S +           D +     
Sbjct: 20 NAYHCDIDESKFLSAAELIVSSGLLDAGYNYVNIDDCWSMKDG 62


>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
          (Chlamydomonas reinhardtii) [TaxId: 3055]}
          Length = 198

 Score = 22.7 bits (47), Expect = 8.2
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 16 LSLVKIINLRSWLELSSQLPCFKSGAATVQNLKNRFHMNLTEEQLQVL 63
             V        +EL   +P  +   AT+  LK   H+ L+   ++ +
Sbjct: 17 RKSVVATEAEK-VELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 319,764
Number of extensions: 10821
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 14
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.2 bits)