Query psy978
Match_columns 695
No_of_seqs 306 out of 1898
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 19:23:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02835 oxidoreductase 100.0 3E-101 8E-106 865.6 56.1 502 22-608 27-536 (539)
2 PLN02991 oxidoreductase 100.0 1E-100 2E-105 857.3 55.3 493 22-607 26-534 (543)
3 PLN00044 multi-copper oxidase- 100.0 1E-100 3E-105 860.7 54.8 520 22-609 25-560 (596)
4 PLN02354 copper ion binding / 100.0 2E-100 5E-105 860.1 53.9 504 22-609 25-544 (552)
5 PLN02792 oxidoreductase 100.0 1.2E-99 3E-104 850.2 54.8 497 23-607 15-527 (536)
6 PLN02168 copper ion binding / 100.0 1.3E-99 3E-104 850.4 53.9 493 22-605 24-543 (545)
7 TIGR03389 laccase laccase, pla 100.0 3.3E-99 7E-104 856.5 57.3 515 22-603 1-539 (539)
8 PLN02191 L-ascorbate oxidase 100.0 4.6E-98 1E-102 847.1 55.0 513 22-610 21-568 (574)
9 TIGR03388 ascorbase L-ascorbat 100.0 2.3E-97 5E-102 840.9 54.5 505 24-604 1-539 (541)
10 KOG1263|consensus 100.0 8.3E-97 2E-101 821.2 53.1 523 22-608 26-560 (563)
11 PLN02604 oxidoreductase 100.0 2.2E-96 5E-101 835.3 56.2 512 22-605 22-563 (566)
12 TIGR03390 ascorbOXfungal L-asc 100.0 2E-92 4.4E-97 798.3 52.3 496 26-592 10-536 (538)
13 TIGR01480 copper_res_A copper- 100.0 3.6E-73 7.9E-78 640.9 48.6 430 24-587 45-586 (587)
14 PRK10965 multicopper oxidase; 100.0 1.6E-68 3.4E-73 599.1 45.7 419 61-588 62-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 6.9E-66 1.5E-70 573.1 45.1 389 61-589 62-469 (471)
16 COG2132 SufI Putative multicop 100.0 1.9E-55 4.1E-60 491.2 40.1 406 56-588 44-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 8.3E-45 1.8E-49 384.1 25.1 265 22-338 25-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 1E-34 2.2E-39 263.4 10.7 108 58-166 8-116 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.1E-29 4.5E-34 236.6 11.6 109 468-589 28-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 6.2E-27 1.3E-31 225.1 15.8 153 182-337 2-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.8 3.3E-19 7.1E-24 168.0 12.8 106 58-164 35-148 (148)
22 TIGR01480 copper_res_A copper- 99.6 2.4E-15 5.2E-20 171.2 10.1 101 61-164 482-587 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.5 9.2E-12 2E-16 132.3 25.8 91 476-589 204-297 (311)
24 PRK10965 multicopper oxidase; 99.2 1.7E-09 3.6E-14 122.6 21.6 242 61-318 209-511 (523)
25 PRK10883 FtsI repressor; Provi 99.1 7.1E-09 1.5E-13 116.4 21.1 227 61-318 206-456 (471)
26 PLN02835 oxidoreductase 99.0 1.7E-08 3.6E-13 115.0 22.0 247 64-315 191-497 (539)
27 TIGR03389 laccase laccase, pla 99.0 2.5E-08 5.3E-13 114.3 23.5 250 65-316 167-506 (539)
28 TIGR03096 nitroso_cyanin nitro 99.0 2.2E-09 4.8E-14 98.2 10.5 98 22-150 22-121 (135)
29 COG2132 SufI Putative multicop 98.9 7.8E-08 1.7E-12 108.1 18.3 236 61-317 186-436 (451)
30 PLN02168 copper ion binding / 98.7 1.7E-06 3.6E-11 98.7 23.8 244 65-314 189-500 (545)
31 PLN02354 copper ion binding / 98.7 1.1E-06 2.3E-11 100.6 22.2 246 65-315 190-504 (552)
32 TIGR03388 ascorbase L-ascorbat 98.7 5.2E-07 1.1E-11 103.4 19.6 237 76-315 203-509 (541)
33 PLN02991 oxidoreductase 98.7 1.7E-06 3.8E-11 98.3 22.9 247 64-315 190-496 (543)
34 TIGR03390 ascorbOXfungal L-asc 98.7 1.1E-06 2.5E-11 100.5 21.5 246 65-315 172-517 (538)
35 PF07731 Cu-oxidase_2: Multico 98.7 1.2E-08 2.7E-13 95.5 4.4 91 74-165 32-136 (138)
36 PLN02604 oxidoreductase 98.7 5.2E-08 1.1E-12 112.0 9.3 90 475-590 56-145 (566)
37 PLN02792 oxidoreductase 98.6 8.3E-06 1.8E-10 92.9 25.9 246 64-314 179-488 (536)
38 PLN02191 L-ascorbate oxidase 98.4 1.2E-05 2.6E-10 92.6 19.7 244 67-315 217-532 (574)
39 PF07732 Cu-oxidase_3: Multico 98.4 1.1E-06 2.4E-11 79.9 8.7 90 474-590 26-116 (117)
40 PLN00044 multi-copper oxidase- 98.3 5.2E-05 1.1E-09 87.1 20.4 234 76-314 217-518 (596)
41 TIGR02656 cyanin_plasto plasto 98.1 1.9E-05 4.1E-10 69.6 9.2 82 75-164 16-99 (99)
42 PF00394 Cu-oxidase: Multicopp 97.9 2E-05 4.3E-10 75.8 6.2 85 63-148 35-136 (159)
43 PF00127 Copper-bind: Copper b 97.9 4.9E-05 1.1E-09 67.0 7.5 83 75-164 16-99 (99)
44 KOG1263|consensus 97.7 0.0031 6.8E-08 72.0 20.8 247 64-315 192-521 (563)
45 PRK02888 nitrous-oxide reducta 97.7 0.00022 4.7E-09 81.0 10.9 96 57-165 534-634 (635)
46 PRK02710 plastocyanin; Provisi 97.7 0.00026 5.6E-09 64.6 9.5 76 73-164 44-119 (119)
47 TIGR03095 rusti_cyanin rusticy 97.7 0.00026 5.7E-09 67.0 9.7 91 474-587 52-147 (148)
48 PF13473 Cupredoxin_1: Cupredo 97.6 6.8E-05 1.5E-09 66.7 4.9 83 63-163 22-104 (104)
49 TIGR02657 amicyanin amicyanin. 97.5 0.00071 1.5E-08 57.5 9.2 74 75-164 10-83 (83)
50 TIGR03094 sulfo_cyanin sulfocy 97.4 0.0018 4E-08 61.7 10.9 96 67-166 75-187 (195)
51 TIGR02375 pseudoazurin pseudoa 97.2 0.0023 4.9E-08 57.9 9.6 76 75-167 14-90 (116)
52 PF06525 SoxE: Sulfocyanin (So 97.1 0.005 1.1E-07 60.1 10.9 101 65-166 74-188 (196)
53 TIGR03102 halo_cynanin halocya 97.0 0.006 1.3E-07 55.1 10.0 77 73-164 39-115 (115)
54 TIGR02656 cyanin_plasto plasto 96.9 0.0045 9.8E-08 54.5 8.6 83 473-587 16-98 (99)
55 TIGR03096 nitroso_cyanin nitro 96.9 0.0049 1.1E-07 56.9 8.3 61 474-574 61-121 (135)
56 COG3794 PetE Plastocyanin [Ene 96.6 0.012 2.5E-07 54.0 8.7 75 76-165 54-128 (128)
57 PRK02888 nitrous-oxide reducta 95.7 0.041 9E-07 63.0 9.4 79 473-588 554-633 (635)
58 PF13473 Cupredoxin_1: Cupredo 95.6 0.053 1.1E-06 48.1 8.0 68 473-581 34-101 (104)
59 PRK02710 plastocyanin; Provisi 94.3 0.22 4.8E-06 45.4 8.3 72 474-587 47-118 (119)
60 PF00116 COX2: Cytochrome C ox 93.8 0.32 6.9E-06 44.4 8.3 74 75-163 45-119 (120)
61 PF00127 Copper-bind: Copper b 93.2 0.65 1.4E-05 40.7 9.0 39 545-587 60-98 (99)
62 TIGR02375 pseudoazurin pseudoa 90.3 1.9 4.2E-05 39.0 8.8 36 551-590 54-89 (116)
63 TIGR02695 azurin azurin. Azuri 86.3 3.5 7.7E-05 37.6 7.7 39 124-163 84-125 (125)
64 COG1622 CyoA Heme/copper-type 86.1 3.1 6.8E-05 42.8 8.3 77 76-167 137-214 (247)
65 COG4454 Uncharacterized copper 85.0 3.4 7.3E-05 39.1 7.1 88 72-165 59-158 (158)
66 TIGR02866 CoxB cytochrome c ox 84.0 3.6 7.9E-05 41.0 7.5 76 76-167 117-194 (201)
67 PF00116 COX2: Cytochrome C ox 82.0 9.2 0.0002 34.8 8.7 75 472-587 44-119 (120)
68 PRK10378 inactive ferrous ion 81.4 11 0.00025 41.1 10.6 84 66-167 33-119 (375)
69 COG4454 Uncharacterized copper 80.1 5.9 0.00013 37.5 6.7 93 475-588 64-157 (158)
70 TIGR02657 amicyanin amicyanin. 77.5 16 0.00034 30.7 8.2 72 474-587 11-82 (83)
71 TIGR03094 sulfo_cyanin sulfocy 75.0 29 0.00063 33.8 9.9 102 474-589 85-186 (195)
72 TIGR02866 CoxB cytochrome c ox 74.8 14 0.00031 36.8 8.4 74 473-589 116-192 (201)
73 TIGR02695 azurin azurin. Azuri 72.1 22 0.00048 32.5 8.0 73 237-313 16-110 (125)
74 PF06525 SoxE: Sulfocyanin (So 71.6 39 0.00084 33.4 10.2 102 474-590 86-188 (196)
75 TIGR03102 halo_cynanin halocya 69.8 27 0.00058 31.6 8.1 35 550-588 81-115 (115)
76 PF12690 BsuPI: Intracellular 64.8 57 0.0012 27.5 8.7 65 246-312 3-81 (82)
77 COG4263 NosZ Nitrous oxide red 63.5 7.3 0.00016 42.8 3.7 77 77-164 559-636 (637)
78 smart00758 PA14 domain in bact 50.8 1.1E+02 0.0023 28.0 8.9 68 238-311 51-119 (136)
79 PF14874 PapD-like: Flagellar- 47.2 1.7E+02 0.0037 25.1 9.2 61 240-311 15-82 (102)
80 KOG3210|consensus 45.2 7.9 0.00017 36.9 0.3 32 657-688 175-206 (226)
81 COG3794 PetE Plastocyanin [Ene 45.0 87 0.0019 28.9 7.0 32 554-589 97-128 (128)
82 PF12690 BsuPI: Intracellular 44.5 59 0.0013 27.4 5.5 57 77-145 17-80 (82)
83 COG1470 Predicted membrane pro 43.2 5.4E+02 0.012 29.1 16.2 75 238-319 390-471 (513)
84 PF07691 PA14: PA14 domain; I 42.4 1.4E+02 0.003 27.3 8.3 62 238-305 53-121 (145)
85 PF10633 NPCBM_assoc: NPCBM-as 41.3 1.8E+02 0.004 23.8 8.0 64 242-314 2-74 (78)
86 PF05938 Self-incomp_S1: Plant 40.6 1.4E+02 0.0031 26.3 7.8 70 87-167 2-72 (110)
87 COG3354 FlaG Putative archaeal 40.2 1.3E+02 0.0029 28.1 7.4 54 245-303 70-131 (154)
88 PF11614 FixG_C: IG-like fold 40.0 61 0.0013 29.0 5.3 49 245-302 33-82 (118)
89 PF07705 CARDB: CARDB; InterP 39.9 2.1E+02 0.0045 24.0 8.6 66 240-315 14-83 (101)
90 MTH00047 COX2 cytochrome c oxi 37.5 2.2E+02 0.0048 28.2 9.2 76 77-167 117-193 (194)
91 PF05506 DUF756: Domain of unk 37.1 2.6E+02 0.0056 23.6 8.6 59 245-315 20-78 (89)
92 PF04151 PPC: Bacterial pre-pe 36.1 1.5E+02 0.0032 23.7 6.5 20 237-256 5-24 (70)
93 MTH00140 COX2 cytochrome c oxi 35.6 1.5E+02 0.0033 30.1 8.0 77 75-167 139-217 (228)
94 COG1622 CyoA Heme/copper-type 32.9 1.7E+02 0.0037 30.2 7.8 77 473-590 136-213 (247)
95 TIGR01433 CyoA cytochrome o ub 31.2 99 0.0022 31.5 5.7 75 474-589 139-214 (226)
96 cd00916 Npc2_like Niemann-Pick 30.6 1.3E+02 0.0029 27.3 6.0 17 121-137 75-91 (123)
97 MTH00140 COX2 cytochrome c oxi 30.3 1.9E+02 0.004 29.5 7.6 77 472-589 138-215 (228)
98 PRK05461 apaG CO2+/MG2+ efflux 28.7 1.2E+02 0.0025 28.0 5.2 49 246-298 32-84 (127)
99 PF01835 A2M_N: MG2 domain; I 28.0 2.3E+02 0.005 24.2 6.8 71 241-315 11-85 (99)
100 PTZ00047 cytochrome c oxidase 27.9 2.3E+02 0.005 27.3 7.1 76 472-588 71-147 (162)
101 PRK13211 N-acetylglucosamine-b 27.8 3.2E+02 0.007 31.1 9.5 20 238-257 212-231 (478)
102 PF14344 DUF4397: Domain of un 27.6 4.4E+02 0.0095 23.4 11.5 22 282-303 61-82 (122)
103 COG1188 Ribosome-associated he 27.5 43 0.00093 29.4 2.0 32 63-94 32-63 (100)
104 PF05506 DUF756: Domain of unk 27.4 2.3E+02 0.005 23.9 6.6 55 75-137 8-65 (89)
105 MTH00129 COX2 cytochrome c oxi 24.7 2E+02 0.0043 29.4 6.6 60 471-571 137-196 (230)
106 cd00918 Der-p2_like Several gr 24.3 1.7E+02 0.0037 26.6 5.4 17 121-137 71-87 (120)
107 KOG3661|consensus 23.6 44 0.00096 38.7 1.7 55 625-689 466-522 (1019)
108 MTH00047 COX2 cytochrome c oxi 23.4 5.3E+02 0.011 25.6 9.1 76 473-589 115-191 (194)
109 PF04379 DUF525: Protein of un 23.4 1.3E+02 0.0028 26.0 4.2 49 246-298 15-67 (90)
110 PTZ00047 cytochrome c oxidase 23.2 4.5E+02 0.0097 25.3 8.1 75 77-166 74-149 (162)
111 PF10989 DUF2808: Protein of u 22.2 1E+02 0.0022 29.0 3.6 25 124-148 98-126 (146)
112 MTH00098 COX2 cytochrome c oxi 20.7 2.6E+02 0.0055 28.5 6.4 77 472-589 138-215 (227)
113 TIGR02745 ccoG_rdxA_fixG cytoc 20.5 2.2E+02 0.0049 32.0 6.5 50 245-302 348-397 (434)
No 1
>PLN02835 oxidoreductase
Probab=100.00 E-value=3.5e-101 Score=865.59 Aligned_cols=502 Identities=21% Similarity=0.305 Sum_probs=374.5
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++++|+|+|++.. +++||++|.+|+||||+|||+|++++||+|+|+|+|+| .++|+|
T Consensus 27 ~~~~~y~~~v~~~~---------------------~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L-~~~tti 84 (539)
T PLN02835 27 DPYKYYTWTVTYGT---------------------ISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKL-DQPFLL 84 (539)
T ss_pred CcEEEEEEEEEEEE---------------------eccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCC-CCCCcE
Confidence 57899999999954 47899999999999999999999999999999999999 589999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCC-CCC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLY-DFD 179 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~-d~d 179 (695)
||||++|++++||||+++ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||+++.. ++. +| .+|
T Consensus 85 HWHGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~-~~~--p~~~~d 160 (539)
T PLN02835 85 TWNGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPR-IPI--PFPLPD 160 (539)
T ss_pred EeCCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCC-CCc--CCCCCC
Confidence 999999999999999999 99999999999999997 6899999999999999999999999986542 221 12 123
Q ss_pred CCceEEEEeeecccchhhhhhcccCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCc
Q psy978 180 LPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNC 259 (695)
Q Consensus 180 ~~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~ 259 (695)
. |++|+|+||++++..+.............++++||||+..+ .++|++|++|||||||++...
T Consensus 161 ~-e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~---------------~~~v~~G~~yRlRliNa~~~~- 223 (539)
T PLN02835 161 G-DFTLLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQS---------------TFSGDQGKTYMFRISNVGLST- 223 (539)
T ss_pred c-eEEEEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccCc---------------eEEECCCCEEEEEEEEcCCCc-
Confidence 3 68999999999886443221112223457899999999764 789999999999999999987
Q ss_pred cEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCCC
Q psy978 260 PIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPD 339 (695)
Q Consensus 260 ~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~~ 339 (695)
.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.....+. .....|||+|.++..
T Consensus 224 ~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~----~~~~~ail~Y~~~~~ 299 (539)
T PLN02835 224 SLNFRIQGHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQ----ILTATAVLHYSNSRT 299 (539)
T ss_pred cEEEEECCCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCC----CcceEEEEEECCCCC
Confidence 7999999999999999999999999999999999999999999998899999986433221 345789999987643
Q ss_pred CCCCCCccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCC-ccccCCceEEEEEEeeeecCCCCccccccccc
Q psy978 340 ESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDV-RLQDRANLTFYISYDFYEIDNPHFHLSTLYGF 418 (695)
Q Consensus 340 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~g~ 418 (695)
..+...|....... . ..+.. .... ...+......+.+.... ......+.++.+...+..
T Consensus 300 ~~~~~~p~~p~~~~-~---~~~~~-~~~~-~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 359 (539)
T PLN02835 300 PASGPLPALPSGEL-H---WSMRQ-ARTY-RWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPL-------------- 359 (539)
T ss_pred CCCCCCCCCCcccc-c---cccch-hhcc-ccccCccccCCCCCccccccccCCCceEEEeccccc--------------
Confidence 11111111000000 0 00000 0000 00000000000000000 001122333333221100
Q ss_pred ccccccccccccccCCccccCCCCccccccccCCccccccCC-ccCCCCCCCcccceeeeeCCCCEEEEEEEeCCCCCCC
Q psy978 419 DEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNL-TTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDA 497 (695)
Q Consensus 419 ~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~g~vVeivl~N~~~~~~~ 497 (695)
+ .....|+|||+||..|+.|+|.+.+...++.|+... ....-....+.+++++.+++|++|||+|+|.+ ..
T Consensus 360 --~---~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~---~~ 431 (539)
T PLN02835 360 --I---NGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNE---KT 431 (539)
T ss_pred --c---CCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCC---CC
Confidence 0 012468899999999999998765543344555331 10000112445689999999999999999986 45
Q ss_pred CCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEeecchhhh
Q psy978 498 NHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHV 577 (695)
Q Consensus 498 ~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~HCHi~~H~ 577 (695)
.||||||||+||||++|. | .++ ......+|+.||++|||+.||++||++|||+|||||+|+|||||++|+
T Consensus 432 ~HP~HLHGh~F~Vlg~G~-g-~~~--------~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~ 501 (539)
T PLN02835 432 MQSWHLDGYDFWVVGYGS-G-QWT--------PAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQ 501 (539)
T ss_pred CCCCCCCCccEEEEeccC-C-CCC--------cccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhh
Confidence 899999999999999874 2 332 112235688999999999999999999999999999999999999999
Q ss_pred hcCceEEEEeccC----CCCCCCCCCCCCCCCCCC
Q psy978 578 ETGMALVFKVGEH----EDMAPVPKDFPTCGDYYN 608 (695)
Q Consensus 578 ~~GM~~v~~V~~~----~~~~~~P~~~p~Cg~~~~ 608 (695)
.+||+++|+|++. .+++++|+++|+||.-+.
T Consensus 502 ~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 502 YLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred hcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 9999999999875 578999999999985443
No 2
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.1e-100 Score=857.33 Aligned_cols=493 Identities=22% Similarity=0.343 Sum_probs=370.4
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++.+|+|+|++.. +++||++|.+++||||+|||+|++++||+|+|+|+|+| .++++|
T Consensus 26 ~~~~~~~~~vt~~~---------------------~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L-~~~tti 83 (543)
T PLN02991 26 DPYRFFEWHVTYGN---------------------ISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHL-DEPFLI 83 (543)
T ss_pred CceEEEEEEEEEEE---------------------eCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCC-CCCccE
Confidence 57899999999964 47899999999999999999999999999999999999 589999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCC-CCCCCCCCCC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPR-EVHAPLYDFD 179 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~-~p~~~~~d~d 179 (695)
||||++|.+++||||+++ |||||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||++++.. .|. ..+ |
T Consensus 84 HWHGi~q~~~~~~DGv~~-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~-~~~--d 159 (543)
T PLN02991 84 SWSGIRNWRNSYQDGVYG-TTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPF-PAP--A 159 (543)
T ss_pred EECCcccCCCccccCCCC-CCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCccc-ccc--c
Confidence 999999999999999998 99999999999999999 59999999999999999999999999986532 121 122 3
Q ss_pred CCceEEEEeeecccchhhhhhcccCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCc
Q psy978 180 LPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNC 259 (695)
Q Consensus 180 ~~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~ 259 (695)
. |.+|+|+||+++...............+.++++||||++.. +.++|++|++|||||||++...
T Consensus 160 ~-d~~i~l~DW~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~--------------~~~~v~~G~~yRlRiINa~~~~- 223 (543)
T PLN02991 160 D-DYTVLIGDWYKTNHKDLRAQLDNGGKLPLPDGILINGRGSG--------------ATLNIEPGKTYRLRISNVGLQN- 223 (543)
T ss_pred c-eeEEEecceecCCHHHHHHHhhcCCCCCCCCEEEEccCCCC--------------ceEEECCCCEEEEEEEeccCCe-
Confidence 3 68999999999875443221111222357899999999754 3799999999999999999987
Q ss_pred cEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCCC
Q psy978 260 PIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPD 339 (695)
Q Consensus 260 ~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~~ 339 (695)
.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+||||+...... ......|||+|++++.
T Consensus 224 ~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~----~~~~~~AIl~Y~g~~~ 299 (543)
T PLN02991 224 SLNFRIQNHTMKLVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS----KILITTGVLHYSNSAG 299 (543)
T ss_pred eEEEEECCCEEEEEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC----CCcceEEEEEeCCCCC
Confidence 699999999999999999999999999999999999999999999999999998764332 1345689999998653
Q ss_pred CCCCCCccC-CcccCCccccCCCCCCcCCCcccccccccccCCCCCCCcccc--------CCceEEEEEEeeeecCCCCc
Q psy978 340 ESPAGEVDY-DATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQD--------RANLTFYISYDFYEIDNPHF 410 (695)
Q Consensus 340 ~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~d~~~~l~~~~~~~~~~~~ 410 (695)
......|.. ...... .+..+. ....+.+.. ....+. ..+..+.+...+..
T Consensus 300 ~~~~~~p~~p~~~~~~------~~~~~~-----~~~~l~p~~----~~~~p~~~~~~~~~~~~~~~~~~~~~~~------ 358 (543)
T PLN02991 300 PVSGPIPDGPIQLSWS------FDQARA-----IKTNLTASG----PRPNPQGSYHYGKINITRTIRLANSAGN------ 358 (543)
T ss_pred CCCCCCCCCCcccccc------ccchhh-----hhhcccCCC----CCCCCCccccccccccceeEEEeecccc------
Confidence 211001100 000000 000000 001111111 111111 11111111111000
Q ss_pred ccccccccccccccccccccccCCccccCCCCccccccccCCccccccC-CccCCCCCCCcccceeeeeCCCCEEEEEEE
Q psy978 411 HLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSN-LTTDRCADSYCECTNVVNVPLESVVELIII 489 (695)
Q Consensus 411 ~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g~vVeivl~ 489 (695)
+ . ..+.|+|||+||..|++|+|.+.+...++.|..+ .....-.......++++.+++|++|||||+
T Consensus 359 ----------~--~-g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViq 425 (543)
T PLN02991 359 ----------I--E-GKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFE 425 (543)
T ss_pred ----------c--C-ceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEe
Confidence 0 1 1346899999999999999866543222333211 000000111223577899999999999999
Q ss_pred eCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCceeeEE
Q psy978 490 DEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLF 569 (695)
Q Consensus 490 N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~ 569 (695)
|.. ...||||||||+||||++|. | +++ ......+|+.||++|||+.||++||++|||+|||||+|+|
T Consensus 426 n~~---~~~HP~HLHGh~F~Vvg~G~-G-~f~--------~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~ 492 (543)
T PLN02991 426 NWE---DIVQTWHLDGYSFYVVGMEL-G-KWS--------AASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNL 492 (543)
T ss_pred CCC---CCCCCeeeCCcceEEEEeCC-C-CCC--------cccccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeee
Confidence 976 45899999999999999873 3 343 2223468999999999999999999999999999999999
Q ss_pred eecchhhhhcCceEEEEecc----CCCCCCCCCCCCCCCCCC
Q psy978 570 HCHIEFHVETGMALVFKVGE----HEDMAPVPKDFPTCGDYY 607 (695)
Q Consensus 570 HCHi~~H~~~GM~~v~~V~~----~~~~~~~P~~~p~Cg~~~ 607 (695)
||||++|+..||++++.|.+ .++++++|+++|+||.-+
T Consensus 493 HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~ 534 (543)
T PLN02991 493 RSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRAT 534 (543)
T ss_pred eeCccccccccEEEEEEecCCCCccccccCCCcccCccccCC
Confidence 99999999999999998754 236889999999998443
No 3
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.5e-100 Score=860.67 Aligned_cols=520 Identities=22% Similarity=0.323 Sum_probs=377.5
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCC--ceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCc
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADG--VKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEEST 99 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG--~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~ 99 (695)
+.+++|+|+|++.. +++|| ..+.+++||||+|||+|+|++||+|+|+|+|+| .+++
T Consensus 25 ~~~~~y~~~v~~~~---------------------~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L-~~~t 82 (596)
T PLN00044 25 DPYAYYDWEVSYVS---------------------AAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNAL-DEPL 82 (596)
T ss_pred CceEEEEEEEEEEE---------------------EccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCC-CCCc
Confidence 66899999999954 47788 456899999999999999999999999999999 5899
Q ss_pred eEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCC
Q psy978 100 SIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDF 178 (695)
Q Consensus 100 siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~ 178 (695)
+|||||++|+.++||||+++ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||++++.. +. +|..
T Consensus 83 tIHWHGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~-~~--P~~~ 158 (596)
T PLN00044 83 LLTWHGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVI-PI--PFGF 158 (596)
T ss_pred cEEECCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccc-cc--cccC
Confidence 99999999999999999998 99999999999999999 59999999999999999999999999986532 11 1221
Q ss_pred -CCCceEEEEeeecccchhhhhhcccCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCC
Q psy978 179 -DLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYL 257 (695)
Q Consensus 179 -d~~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~ 257 (695)
|..|.+|+|+||++++................++++||||++.+.. ++.........+.++|++|++|||||||++..
T Consensus 159 ~~~~e~~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g~~~~-n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~ 237 (596)
T PLN00044 159 PDGGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFGPYQY-NDSLVPPGITYERINVDPGKTYRFRVHNVGVA 237 (596)
T ss_pred CcccceEEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccCcccc-CCccccCCCccceEEECCCCEEEEEEEEccCC
Confidence 2127999999999987544321111122235689999999987521 11100011233589999999999999999988
Q ss_pred CccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCc-ceEEEEeec-cCCCcccCCcceEEEEEEc
Q psy978 258 NCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVG-NYWIKMRGL-MDCDERFTSAYQTAVLRYE 335 (695)
Q Consensus 258 ~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g-~Y~Ir~~~~-~~~~~~~~~~~~~ail~Y~ 335 (695)
. .+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|+++++++ +||||+... ..|.. +......|||+|.
T Consensus 238 ~-~~~fsIdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~-~~~~~~~AIl~Y~ 315 (596)
T PLN00044 238 T-SLNFRIQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAV-VDKLTGVAILHYS 315 (596)
T ss_pred c-eEEEEECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCcc-ccCcceeEEEEEC
Confidence 6 899999999999999999999999999999999999999999999865 999998542 33321 3456678999998
Q ss_pred CCCCC--CC-CCCcc-CCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEEeeee-cCCCCc
Q psy978 336 GAPDE--SP-AGEVD-YDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYE-IDNPHF 410 (695)
Q Consensus 336 ~~~~~--~p-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~-~~~~~~ 410 (695)
+++.. .+ ...+. +.++.... .....++....+......+...+....+..+... ..+.
T Consensus 316 ~~~~~~~~~~P~~p~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-- 378 (596)
T PLN00044 316 NSQGPASGPLPDAPDDQYDTAFSI---------------NQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM-- 378 (596)
T ss_pred CCCCCCCCCCCCCCcccCCchhhh---------------hhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc--
Confidence 86531 11 01111 11111000 0001111111000111111222222233322110 0000
Q ss_pred ccccccccccccccccccccccCCccccCCCCccccccccCCccccccCCccCCCCCCCcccceeeeeCCCCEEEEEEEe
Q psy978 411 HLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIID 490 (695)
Q Consensus 411 ~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~vVeivl~N 490 (695)
.+ ..+ . ..+.|+|||+||..|+.|+|.+.+....+.|..+.+...-.......+.++.+++|++|||+|+|
T Consensus 379 -----~~-~~~--~-g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn 449 (596)
T PLN00044 379 -----AP-ELI--D-GKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQN 449 (596)
T ss_pred -----cc-ccc--C-CeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeC
Confidence 00 001 1 24678999999999999999654422223332111000000112236788999999999999999
Q ss_pred CCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEe
Q psy978 491 EGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFH 570 (695)
Q Consensus 491 ~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~H 570 (695)
.. ...||||||||+||||++|. | +++ +.....+|+.||++||||.||++||++|||+|||||+|+||
T Consensus 450 ~~---~~~HP~HLHGh~F~Vvg~G~-G-~~~--------~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lH 516 (596)
T PLN00044 450 NA---TNVQSYHLDGYAFFVVGMDY-G-LWT--------DNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLR 516 (596)
T ss_pred CC---CCCCCeeEcCccEEEEeecC-C-CCC--------CCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhh
Confidence 74 45899999999999999984 3 444 22345789999999999999999999999999999999999
Q ss_pred ecchhhhhcCceEEEEecc-----CCCCCCCCCCCCCCCCCCCC
Q psy978 571 CHIEFHVETGMALVFKVGE-----HEDMAPVPKDFPTCGDYYNV 609 (695)
Q Consensus 571 CHi~~H~~~GM~~v~~V~~-----~~~~~~~P~~~p~Cg~~~~~ 609 (695)
|||+.|+..||+++|.|.+ ..+++++|++++.||.-+..
T Consensus 517 CH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~~~~~ 560 (596)
T PLN00044 517 VENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGALSSL 560 (596)
T ss_pred ccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccccccC
Confidence 9999999999999998753 23688999999999866553
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.2e-100 Score=860.08 Aligned_cols=504 Identities=22% Similarity=0.344 Sum_probs=373.6
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++++|+|+|++.. +++||++|.+++||||+|||+|+|++||+|+|+|+|+| .++++|
T Consensus 25 ~~~~~y~~~v~~~~---------------------~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l-~~~tti 82 (552)
T PLN02354 25 DPYFFFTWNVTYGT---------------------ASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNL-DEPFLL 82 (552)
T ss_pred ccEEEEEEEEEEEE---------------------ecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECC-CCCccc
Confidence 56899999999953 47899999999999999999999999999999999999 589999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCC-CC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYD-FD 179 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d-~d 179 (695)
||||++|++++||||+|+ |||||+||++|+|+|++ +|+||||||||++.|+++||+|+|||++++.. + .+|+ .|
T Consensus 83 HWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~-~--~p~~~~d 158 (552)
T PLN02354 83 TWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLI-P--VPYADPE 158 (552)
T ss_pred ccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCC-C--CCCCCcC
Confidence 999999999999999999 99999999999999998 68999999999999999999999999986532 1 1233 22
Q ss_pred CCceEEEEeeecccchhhhhhcccCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCc
Q psy978 180 LPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNC 259 (695)
Q Consensus 180 ~~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~ 259 (695)
. |++|+|+||+++.................++++||||++.... ....+.++|++||+|||||||++...
T Consensus 159 ~-e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~~--------~~~~~~~~v~~Gk~yRlRiINa~~~~- 228 (552)
T PLN02354 159 D-DYTVLIGDWYTKSHTALKKFLDSGRTLGRPDGVLINGKSGKGD--------GKDEPLFTMKPGKTYRYRICNVGLKS- 228 (552)
T ss_pred c-eEEEEeeeeccCCHHHHHHHHhcCCCCCCCCeEEEeCCcCCCC--------CCCceEEEECCCCEEEEEEEecCCCc-
Confidence 3 7899999999987544322111111134689999999964311 01125899999999999999999987
Q ss_pred cEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCCC
Q psy978 260 PIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPD 339 (695)
Q Consensus 260 ~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~~ 339 (695)
.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.....+ ......|||+|.+++.
T Consensus 229 ~~~f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~----~~~~~~ail~Y~g~~~ 304 (552)
T PLN02354 229 SLNFRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK----KVLTTTGIIRYEGGKG 304 (552)
T ss_pred eEEEEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC----CCccEEEEEEECCCCC
Confidence 799999999999999999999999999999999999999999999889999998643322 1355789999998654
Q ss_pred CCCCCCccC-CcccCCccccCCCCCCcCCCcccccccccccC-CCCC--C-CccccCCceEEEEEEeeeecCCCCccccc
Q psy978 340 ESPAGEVDY-DATRTSGTVLNPLNTPSRQAKSTLISELSTVH-SASS--D-VRLQDRANLTFYISYDFYEIDNPHFHLST 414 (695)
Q Consensus 340 ~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~--~-~~~~~~~d~~~~l~~~~~~~~~~~~~~~~ 414 (695)
..+...|.. .+... ..+ . +... ...+.+.. .+.. . .......+..+.+..++..
T Consensus 305 ~~~~~~p~~~~~~~~---~~~---~-~~~~----~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------- 363 (552)
T PLN02354 305 PASPELPEAPVGWAW---SLN---Q-FRSF----RWNLTASAARPNPQGSYHYGKINITRTIKLVNSASK---------- 363 (552)
T ss_pred CCCCCCCCCCccccc---chh---h-hhhh----hhcccccccCCCCCCccccccccccceEEEeccccc----------
Confidence 221111110 00000 000 0 0000 00011100 0000 0 0001112222222221100
Q ss_pred ccccccccccccccccccCCccccCCCCccccccc-cCCccccccC----CccCCCCCCCcccceeeeeCCCCEEEEEEE
Q psy978 415 LYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRD-QIDESTFCSN----LTTDRCADSYCECTNVVNVPLESVVELIII 489 (695)
Q Consensus 415 ~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~g~vVeivl~ 489 (695)
....+.|+|||+||..|+.|+|.+.+ .+..+.++.+ .....+ ...+.+++++.+++|++|||+|+
T Consensus 364 ---------~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~-~~~~~~~~v~~~~~~~~VeiVi~ 433 (552)
T PLN02354 364 ---------VDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKI-TKIKIQPNVLNITFRTFVEIIFE 433 (552)
T ss_pred ---------CCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCcccc-CccccCCeeEEcCCCCEEEEEEe
Confidence 01134688999999999999987653 2333444311 111112 12455678999999999999999
Q ss_pred eCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCceeeEE
Q psy978 490 DEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLF 569 (695)
Q Consensus 490 N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~ 569 (695)
|.. ...||||||||+||||++|. | .++ ......+|+.||++|||+.||++||++|||+|||||+|+|
T Consensus 434 n~~---~~~HP~HLHGh~F~Vlg~G~-G-~~~--------~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~ 500 (552)
T PLN02354 434 NHE---KSMQSWHLDGYSFFAVAVEP-G-TWT--------PEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNI 500 (552)
T ss_pred CCC---CCCCCCcCCCccEEEEeecC-C-CCC--------ccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEee
Confidence 976 45899999999999999984 3 333 2223468899999999999999999999999999999999
Q ss_pred eecchhhhhcCceEEEEeccC----CCCCCCCCCCCCCCCCCCC
Q psy978 570 HCHIEFHVETGMALVFKVGEH----EDMAPVPKDFPTCGDYYNV 609 (695)
Q Consensus 570 HCHi~~H~~~GM~~v~~V~~~----~~~~~~P~~~p~Cg~~~~~ 609 (695)
||||++|+.+||+++|.|.+. .+++++|++.+.||..+..
T Consensus 501 HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~~ 544 (552)
T PLN02354 501 RSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKGL 544 (552)
T ss_pred eccccccccccceEEEEEeCCccccCcCCCCCccccccccccCC
Confidence 999999999999999987553 2456789999999866543
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.2e-99 Score=850.21 Aligned_cols=497 Identities=22% Similarity=0.333 Sum_probs=369.4
Q ss_pred ceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEe
Q psy978 23 RTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIH 102 (695)
Q Consensus 23 ~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH 102 (695)
++.+|+|+|++.. +++||++|.+++||||+|||+|++++||+|+|+|+|+| .++++||
T Consensus 15 ~~~~~~~~vt~~~---------------------~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L-~~~ttiH 72 (536)
T PLN02792 15 DTLFYNWRVTYGN---------------------ISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDL-DEPFLLS 72 (536)
T ss_pred CeEEEEEEEEEEE---------------------eCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCC-CCCcCEe
Confidence 4679999999964 47899999999999999999999999999999999999 4999999
Q ss_pred eCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCC-CCC
Q psy978 103 WHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYD-FDL 180 (695)
Q Consensus 103 ~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d-~d~ 180 (695)
|||++|++++||||+++ |||||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||++++. ++. +|+ +|.
T Consensus 73 WHGl~q~~~~~~DGv~~-tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~-~~~--p~~~~d~ 148 (536)
T PLN02792 73 WNGVHMRKNSYQDGVYG-TTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPR-IPV--PFPEPAG 148 (536)
T ss_pred CCCcccCCCCccCCCCC-CcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcc-cCc--CCCcccc
Confidence 99999999999999988 99999999999999999 5999999999999999999999999987543 221 122 233
Q ss_pred CceEEEEeeecccchhhhhhcccCCCC-CCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCc
Q psy978 181 PEHIMLITDWSHVLGVEMFNAHHHADG-DNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNC 259 (695)
Q Consensus 181 ~e~~l~l~dw~~~~~~~~~~~~~~~~~-~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~ 259 (695)
|.+|+|+||++++............. +..++++||||++.... +.++|++||+|||||||++...
T Consensus 149 -e~~i~l~Dw~~~~~~~~~~~~~~g~~~~~~~d~~liNG~~~~~~------------~~~~v~~Gk~yRlRliNa~~~~- 214 (536)
T PLN02792 149 -DFTFLIGDWYRRNHTTLKKILDGGRKLPLMPDGVMINGQGVSYV------------YSITVDKGKTYRFRISNVGLQT- 214 (536)
T ss_pred -eeEEEecccccCCHHHHHHHhhccCcCCCCCCEEEEeccCCCCc------------ceEEECCCCEEEEEEEEcCCCc-
Confidence 68999999999875432211111111 23789999999986421 4899999999999999999987
Q ss_pred cEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCCC
Q psy978 260 PIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPD 339 (695)
Q Consensus 260 ~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~~ 339 (695)
.+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++|+|||++.....+. .....|||+|.++..
T Consensus 215 ~~~f~i~gH~~tVI~~DG~~v~p~~~~~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~ 290 (536)
T PLN02792 215 SLNFEILGHQLKLIEVEGTHTVQSMYTSLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA----KVLVSSTLHYSNSKG 290 (536)
T ss_pred eEEEEECCcEEEEEEeCCccCCCcceeEEEEccCceEEEEEEcCCCCceEEEEEEeccCCC----CCceEEEEEECCCCC
Confidence 7999999999999999999999999999999999999999999998899999987543332 345689999998654
Q ss_pred CCCC--CCccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEEeeee-cCCCCccccccc
Q psy978 340 ESPA--GEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYE-IDNPHFHLSTLY 416 (695)
Q Consensus 340 ~~p~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~-~~~~~~~~~~~~ 416 (695)
..+. ..|.+.+......... + .+ ..+.+ ......+...+....+..+... ..+
T Consensus 291 ~~~~~p~~p~~~~~~~~~~~~~-----~--~~----~~l~~----~~~~~~p~~~~~~~~~~~~~~~~~~~--------- 346 (536)
T PLN02792 291 HKIIHARQPDPDDLEWSIKQAQ-----S--IR----TNLTA----SGPRTNPQGSYHYGKMKISRTLILES--------- 346 (536)
T ss_pred CCCCCCCCCCcCCccccccchh-----h--hh----hccCC----CCCCCCCCcccccceeccceeEEecc---------
Confidence 3211 1121221110000000 0 00 00110 0011111111111111111100 000
Q ss_pred ccccccccccccccccCCccccCCCCccccccc-cCCcccc-----ccCCccCCCCCCCcccceeeeeCCCCEEEEEEEe
Q psy978 417 GFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRD-QIDESTF-----CSNLTTDRCADSYCECTNVVNVPLESVVELIIID 490 (695)
Q Consensus 417 g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~v~~g~vVeivl~N 490 (695)
++..+ ...+.|+|||+||..|++|+|.+.+ .+. +.+ .+.+.. .......+.++.+++|++|||||+|
T Consensus 347 ~~~~~---~~~~~~~iN~~s~~~p~~p~L~a~~~~~~-g~~~~~~~~~~p~~---~~~~~~~~~v~~~~~~~~VeiViqn 419 (536)
T PLN02792 347 SAALV---KRKQRYAINGVSFVPSDTPLKLADHFKIK-GVFKVGSIPDKPRR---GGGMRLDTSVMGAHHNAFLEIIFQN 419 (536)
T ss_pred ccccc---CceeEEEECCcccCCCCCchhhhhhhccC-CCcCcccCccCCcc---cCCCccCceEEEcCCCCEEEEEEEC
Confidence 00000 1134678999999999999997643 222 222 211110 0111235789999999999999999
Q ss_pred CCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEe
Q psy978 491 EGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFH 570 (695)
Q Consensus 491 ~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~H 570 (695)
.. ...||||||||+||||++|. | +++ +.....+|+.||++||||.||++||++|||+|||||+|+||
T Consensus 420 ~~---~~~HP~HLHGh~F~Vvg~G~-G-~~~--------~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~H 486 (536)
T PLN02792 420 RE---KIVQSYHLDGYNFWVVGINK-G-IWS--------RASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNLR 486 (536)
T ss_pred CC---CCCCCeeeCCCceEEEeecC-C-CCC--------cccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEeee
Confidence 75 45799999999999999984 3 343 22345789999999999999999999999999999999999
Q ss_pred ecchhhhhcCceEEEEeccC----CCCCCCCCCCCCCCCCC
Q psy978 571 CHIEFHVETGMALVFKVGEH----EDMAPVPKDFPTCGDYY 607 (695)
Q Consensus 571 CHi~~H~~~GM~~v~~V~~~----~~~~~~P~~~p~Cg~~~ 607 (695)
||+++|+..||+++|.|.+. .+++++|+++++||.-+
T Consensus 487 Ch~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~ 527 (536)
T PLN02792 487 SQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRAS 527 (536)
T ss_pred EcchhccccceEEEEEEccCCCccccccCCCcccCcccccc
Confidence 99999999999999988643 36889999999998443
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.3e-99 Score=850.41 Aligned_cols=493 Identities=23% Similarity=0.344 Sum_probs=363.0
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++++|+|+|+|.. +++||++|.+++||||+|||+|++++||+|+|+|+|+| .++|+|
T Consensus 24 a~~~~~~~~vt~~~---------------------~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L-~~~tti 81 (545)
T PLN02168 24 APIVSYQWVVSYSQ---------------------RFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNL-TEPFLM 81 (545)
T ss_pred ccEEEEEEEEEEEE---------------------ecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCC-CCCccE
Confidence 57999999999964 47899999999999999999999999999999999999 489999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDL 180 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~ 180 (695)
||||++|++++||||+|+ |||||+||++|+|+|++ +|+||||||||.+.|+++||+|+|||++++........++.
T Consensus 82 HWHGl~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~-- 158 (545)
T PLN02168 82 TWNGLQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDE-- 158 (545)
T ss_pred eeCCccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccc--
Confidence 999999999999999999 99999999999999999 58999999999999999999999999987643211112332
Q ss_pred CceEEEEeeecccchhhhhhcccCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCcc
Q psy978 181 PEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCP 260 (695)
Q Consensus 181 ~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~ 260 (695)
|++|+|+||++.+............+...++++||||++... ++++|++|++|||||||++... .
T Consensus 159 -e~~l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~~~-------------~~~~v~~G~~yRlRiiNa~~~~-~ 223 (545)
T PLN02168 159 -EYDILIGDWFYADHTVMRASLDNGHSLPNPDGILFNGRGPEE-------------TFFAFEPGKTYRLRISNVGLKT-C 223 (545)
T ss_pred -eeeEEEEecCCCCHHHHHhhhhcCCCCCCCCEEEEeccCCCc-------------ceEEeCCCCEEEEEEEeccCCc-e
Confidence 688999999998753322211122234578999999997531 3899999999999999999987 6
Q ss_pred EEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCC----cceEEEEeeccCCCcccCCcceEEEEEEcC
Q psy978 261 IELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHV----GNYWIKMRGLMDCDERFTSAYQTAVLRYEG 336 (695)
Q Consensus 261 ~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~----g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~ 336 (695)
+.|+|+||+|+|||+||.+++|..++.|.|++||||||+|++++++ ++||||+.....+. .....|||+|++
T Consensus 224 ~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~ 299 (545)
T PLN02168 224 LNFRIQDHDMLLVETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPN 299 (545)
T ss_pred EEEEECCcEEEEEEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECC
Confidence 9999999999999999999999999999999999999999998654 38999997643332 355789999987
Q ss_pred CCCCC--CCC-CccCCcccCCccccCCCCCCcCCCccccccccccc---CCCCCCC-ccccCCceEEEEEEeeeecCCCC
Q psy978 337 APDES--PAG-EVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTV---HSASSDV-RLQDRANLTFYISYDFYEIDNPH 409 (695)
Q Consensus 337 ~~~~~--p~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~---~~~~~~~-~~~~~~d~~~~l~~~~~~~~~~~ 409 (695)
++... |.. .+.+.+.... ...... ....+.+. ..+.... ......+.++.+...+ .
T Consensus 300 ~~~~~~~p~p~~p~~~~~~~~----------~~~~~~-~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~---- 362 (545)
T PLN02168 300 SPLDPVGPLPLAPALHDYFSS----------VEQALS-IRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDV--M---- 362 (545)
T ss_pred CCCCCCCCCCCCCcccccccc----------cchhhh-hhhcCCCCCCCCCCcccccccccccceeEEecccc--c----
Confidence 64321 110 1111110000 000000 00011110 0000000 0001112222111100 0
Q ss_pred cccccccccccccccccccccccCCccccCCCCccccccc-cC----CccccccCCccCCCCCCCcccceeeeeCCCCEE
Q psy978 410 FHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRD-QI----DESTFCSNLTTDRCADSYCECTNVVNVPLESVV 484 (695)
Q Consensus 410 ~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~vV 484 (695)
. ......|+|||+||..|++|+|...+ .+ ..+.+..... + ...-..++++.+++|++|
T Consensus 363 ----------~---~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~--~--~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 363 ----------L---SSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPS--N--KTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ----------c---cCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCC--c--CccccCceEEEecCCCEE
Confidence 0 01134689999999999999985442 21 1111211110 0 001124778999999999
Q ss_pred EEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCc
Q psy978 485 ELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNP 564 (695)
Q Consensus 485 eivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNP 564 (695)
||+|+|.. ...||||||||+||||++|. | .++ ..+...+|+.||++|||+.||++||++|||+||||
T Consensus 426 eiViqn~~---~~~HP~HLHGh~F~Vvg~g~-g-~~~--------~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP 492 (545)
T PLN02168 426 HIVFQNPL---FSLESYHIDGYNFFVVGYGF-G-AWS--------ESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ 492 (545)
T ss_pred EEEEeCCC---CCCCCeeeCCCceEEEECCC-C-CCC--------ccccccCCCCCCCccceEEeCCCCEEEEEEEccCC
Confidence 99999976 45899999999999999874 3 332 22334689999999999999999999999999999
Q ss_pred eeeEEeecchhhhhcCceEEEEec----------cCCCCCCCCCCCCCCCC
Q psy978 565 GYWLFHCHIEFHVETGMALVFKVG----------EHEDMAPVPKDFPTCGD 605 (695)
Q Consensus 565 G~Wl~HCHi~~H~~~GM~~v~~V~----------~~~~~~~~P~~~p~Cg~ 605 (695)
|+|+|||||++|+..||+++|.|. ...+++++|+++++||.
T Consensus 493 G~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~ 543 (545)
T PLN02168 493 GMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK 543 (545)
T ss_pred eEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence 999999999888888888887662 12357789999999984
No 7
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=3.3e-99 Score=856.51 Aligned_cols=515 Identities=28% Similarity=0.480 Sum_probs=382.3
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++++|+|+|++.. +++||++|.+++|||++|||+|++++||+|+|+|+|+|. ++++|
T Consensus 1 ~~~r~y~~~it~~~---------------------~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~-~~tsi 58 (539)
T TIGR03389 1 AEVRHYTFDVQEKN---------------------VTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQ-YNVTI 58 (539)
T ss_pred CceEEEEEEEEEEE---------------------eccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCC-CCeeE
Confidence 46899999999853 478999999999999999999999999999999999995 89999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc-CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCC-CC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA-DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYD-FD 179 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d-~d 179 (695)
||||++|.+++||||+|++|||||+||++|+|+|++ +++||||||||...|+ +||+|+|||+++.... . +++ .|
T Consensus 59 HwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~-~--~~~~~d 134 (539)
T TIGR03389 59 HWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVP-Y--PFPKPD 134 (539)
T ss_pred ecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCC-C--CCCCCC
Confidence 999999999999999999999999999999999999 5999999999998776 4999999999876421 1 121 23
Q ss_pred CCceEEEEeeecccchhhhhhcccCCC-CCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCC
Q psy978 180 LPEHIMLITDWSHVLGVEMFNAHHHAD-GDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLN 258 (695)
Q Consensus 180 ~~e~~l~l~dw~~~~~~~~~~~~~~~~-~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~ 258 (695)
. |.+|+|+||+++...+.+....... ....++++||||+.... +.|. ....+.++|++|++|||||||++...
T Consensus 135 ~-e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~-~~~~----~~~~~~i~v~~G~~~RlRlINa~~~~ 208 (539)
T TIGR03389 135 R-EVPIILGEWWNADVEAVINQANQTGGAPNVSDAYTINGHPGPL-YNCS----SKDTFKLTVEPGKTYLLRIINAALND 208 (539)
T ss_pred c-eEEEEecccccCCHHHHHHHHHhcCCCCCccceEEECCCcCCC-CCCC----CCCceEEEECCCCEEEEEEEeccCCc
Confidence 3 6899999999987655433222111 23467899999995421 1121 12235899999999999999999876
Q ss_pred ccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCC
Q psy978 259 CPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAP 338 (695)
Q Consensus 259 ~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~ 338 (695)
.+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++++|+||||+....+|...+......|||+|.++.
T Consensus 209 -~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~GqRydVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~ 287 (539)
T TIGR03389 209 -ELFFAIANHTLTVVEVDATYTKPFKTKTIVIGPGQTTNVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTS 287 (539)
T ss_pred -eEEEEECCCeEEEEEeCCcccCceEeCeEEecCCCEEEEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCC
Confidence 7999999999999999999999999999999999999999999998899999998766654323345679999999865
Q ss_pred CCC-CCC--CccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEEeeeecCCCCcccccc
Q psy978 339 DES-PAG--EVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTL 415 (695)
Q Consensus 339 ~~~-p~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~ 415 (695)
... |+. .+.+++ .+.... ...++..+..+.....++..+|.++++.+++.......
T Consensus 288 ~~~~p~~~~~~~~~~-------------~~~~~~--~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------ 346 (539)
T TIGR03389 288 NSAKPILPTLPAYND-------------TAAATN--FSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPN------ 346 (539)
T ss_pred CCCCCCCCCCCCCCc-------------hhhhhH--HHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcc------
Confidence 422 211 011111 010000 00122222211111223345677766665543211100
Q ss_pred cccccccccccccccccCCccccCCCCccccccccCCccc----cccCCc----------cCCCCCCCcccceeeeeCCC
Q psy978 416 YGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDEST----FCSNLT----------TDRCADSYCECTNVVNVPLE 481 (695)
Q Consensus 416 ~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~----~~~~~~----------~~~~~~~~~~~~~~~~v~~g 481 (695)
+. .....+..+.|.||+++|..|++|+|.+.+....+. +..... ..+| ..+.+++++.+++|
T Consensus 347 ~~--~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~v~~~~~~ 422 (539)
T TIGR03389 347 NT--CQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLPNNL--FTTNGTKVVRLKFN 422 (539)
T ss_pred cc--cccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCccccc--ccccCceEEEecCC
Confidence 00 001123456789999999999999986543211111 111111 0112 23447889999999
Q ss_pred CEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEe
Q psy978 482 SVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHA 561 (695)
Q Consensus 482 ~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~A 561 (695)
++|||+|+|.+......||||||||+||||++|. | .++.. . ....+|+.||++|||+.||++||++|||+|
T Consensus 423 ~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~-g-~~~~~------~-~~~~~nl~nP~rRDTv~vp~~g~vvirf~a 493 (539)
T TIGR03389 423 STVELVLQDTSILGSENHPIHLHGYNFFVVGTGF-G-NFDPK------K-DPAKFNLVDPPERNTVGVPTGGWAAIRFVA 493 (539)
T ss_pred CEEEEEEecCCcCCCCCCcEeEcCCceEEEEecc-C-CCCcc------c-CccccccCCCCeeeeEEcCCCceEEEEEec
Confidence 9999999997522245899999999999999874 2 33311 0 123578999999999999999999999999
Q ss_pred cCceeeEEeecchhhhhcCceEEEEeccC----CCCCCCCCCCCCC
Q psy978 562 TNPGYWLFHCHIEFHVETGMALVFKVGEH----EDMAPVPKDFPTC 603 (695)
Q Consensus 562 dNPG~Wl~HCHi~~H~~~GM~~v~~V~~~----~~~~~~P~~~p~C 603 (695)
||||+|+|||||+||++.||+++|.+.+. .+++++|+++|+|
T Consensus 494 dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 494 DNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999988542 4589999999999
No 8
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.6e-98 Score=847.09 Aligned_cols=513 Identities=28% Similarity=0.486 Sum_probs=376.5
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++.+|+|+|++.. +++||++|.+++||||+|||+|++++||+|+|+|+|+|..++++|
T Consensus 21 ~~~~~~~~~vt~~~---------------------~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsi 79 (574)
T PLN02191 21 AAVREYTWEVEYKY---------------------WWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVI 79 (574)
T ss_pred cceEEEEEEEEEEE---------------------eccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccE
Confidence 56889999999953 478999999999999999999999999999999999997689999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCCC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLP 181 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~ 181 (695)
||||++|++++||||+|++|||||+||++|+|+|+++++||||||||.+.|+++||+|+|||+++.... ..+.+|.
T Consensus 80 HwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~---~~~~~d~- 155 (574)
T PLN02191 80 HWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPK---ERLRYDG- 155 (574)
T ss_pred ECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCC---CCCCCCe-
Confidence 999999999999999999999999999999999999999999999999999999999999998754321 1133454
Q ss_pred ceEEEEeeecccchhhhhhcccC-C-CCCCCCCeeeeCCCCCCcccCCC--CCc-----------CCCCceeEEEecCcE
Q psy978 182 EHIMLITDWSHVLGVEMFNAHHH-A-DGDNKPPTILMNGKGRFKEFRSN--ATV-----------TYTPMEVFTVKQGHS 246 (695)
Q Consensus 182 e~~l~l~dw~~~~~~~~~~~~~~-~-~~~~~~~~~lING~~~~~~~~~~--~~~-----------~~~~~~~~~v~~G~~ 246 (695)
|++|+|+||+|+...+....... . .....++++||||++++.+.... ... ......+++|++|++
T Consensus 156 e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~ 235 (574)
T PLN02191 156 EFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKT 235 (574)
T ss_pred eEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCE
Confidence 68999999999864332211110 0 11246789999999887431000 000 001123799999999
Q ss_pred EEEEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCC-cceEEEEeeccCCCcccCC
Q psy978 247 YRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHV-GNYWIKMRGLMDCDERFTS 325 (695)
Q Consensus 247 ~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~-g~Y~Ir~~~~~~~~~~~~~ 325 (695)
|||||||+++.. .+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++ ++||||+.....+.. .
T Consensus 236 yRlRiINa~~~~-~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~---~ 311 (574)
T PLN02191 236 YRIRLASTTALA-SLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPN---T 311 (574)
T ss_pred EEEEEEecCCce-eEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCC---C
Confidence 999999999887 89999999999999999999999999999999999999999999876 589999975444421 2
Q ss_pred cceEEEEEEcCCCCCC-CCCC----ccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEE
Q psy978 326 AYQTAVLRYEGAPDES-PAGE----VDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISY 400 (695)
Q Consensus 326 ~~~~ail~Y~~~~~~~-p~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~ 400 (695)
....|||+|.+..... |+.. +.+.+. +... . .....+.............|..+.+..
T Consensus 312 ~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~-------------~~~~-~---~~~~~~~~~~~~~~p~~~~~~~~~~~~ 374 (574)
T PLN02191 312 TQALTILNYVTAPASKLPSSPPPVTPRWDDF-------------ERSK-N---FSKKIFSAMGSPSPPKKYRKRLILLNT 374 (574)
T ss_pred CCceEEEEECCCCCCCCCCCCCCCCCccccc-------------chhh-c---ccccccccccCCCCCCcccceEEEecc
Confidence 3357999998765432 2111 111110 0000 0 000000000000011112344443322
Q ss_pred eeeecCCCCcccccccccccccccccccccccCCccccCCCCccccccccCCccccccCCcc-------CCCC----CCC
Q psy978 401 DFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTT-------DRCA----DSY 469 (695)
Q Consensus 401 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~~~~-------~~~~----~~~ 469 (695)
... ......|.|||++|..|+.|+|.+........|....+. ..+. ...
T Consensus 375 ~~~--------------------~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (574)
T PLN02191 375 QNL--------------------IDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNT 434 (574)
T ss_pred cce--------------------eCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccc
Confidence 110 001236789999999999998876542111111100000 0010 123
Q ss_pred cccceeeeeCCCCEEEEEEEeCCCC---CCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccce
Q psy978 470 CECTNVVNVPLESVVELIIIDEGVA---YDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDT 546 (695)
Q Consensus 470 ~~~~~~~~v~~g~vVeivl~N~~~~---~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDT 546 (695)
+.+++++.+++|++|||+|+|.... ....||||||||+||||++|. | +++.+. ....+|+.||++|||
T Consensus 435 ~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~-g-~~~~~~-------~~~~~nl~nP~rRDT 505 (574)
T PLN02191 435 TTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGD-G-KFKPGI-------DEKTYNLKNPPLRNT 505 (574)
T ss_pred cccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecC-C-CCCccc-------CcccccCCCCCcCCe
Confidence 4678899999999999999997411 256899999999999999884 2 343210 113678999999999
Q ss_pred eEeCCCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEeccCCCCCCCCCCCCCCCCCCCCC
Q psy978 547 VTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCGDYYNVD 610 (695)
Q Consensus 547 v~Vp~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~~~~~~~P~~~p~Cg~~~~~~ 610 (695)
+.||++||++|||+|||||+|+|||||+||++.||+++|.++. ++++++|++++.|+.|+...
T Consensus 506 v~vp~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~-~~~~~~p~~~~~C~~~~~~~ 568 (574)
T PLN02191 506 AILYPYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGL-NRIGKIPDEALGCGLTKQFL 568 (574)
T ss_pred EEeCCCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecCh-hhccCCCcchhhhhcccccc
Confidence 9999999999999999999999999999999999999998775 46677899999999875544
No 9
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=2.3e-97 Score=840.91 Aligned_cols=505 Identities=28% Similarity=0.519 Sum_probs=377.4
Q ss_pred eEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEee
Q psy978 24 TCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHW 103 (695)
Q Consensus 24 ~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~ 103 (695)
+++|+|+|++.. +++||++|.+++|||++|||+|++++||+|+|+|+|+|..++++|||
T Consensus 1 ~~~y~~~vt~~~---------------------~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHw 59 (541)
T TIGR03388 1 IRHYKWEVEYEF---------------------WSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHW 59 (541)
T ss_pred CEEEEEEEEEEE---------------------ecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEe
Confidence 478999999964 47899999999999999999999999999999999999668999999
Q ss_pred CCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCCCce
Q psy978 104 HGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEH 183 (695)
Q Consensus 104 HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e~ 183 (695)
||++|.+++||||+|++|||||+||++|+|+|+++++||||||||.+.|+++||+|+|||+++.... .++++|. |+
T Consensus 60 HGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~---~p~~~d~-e~ 135 (541)
T TIGR03388 60 HGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEK---EPFHYDG-EF 135 (541)
T ss_pred cCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCC---CCccccc-eE
Confidence 9999999999999999999999999999999999999999999999999999999999999875321 1234554 78
Q ss_pred EEEEeeecccchhhhhhcccC-C-CCCCCCCeeeeCCCCCCcccCCCC--C----------cCCCCceeEEEecCcEEEE
Q psy978 184 IMLITDWSHVLGVEMFNAHHH-A-DGDNKPPTILMNGKGRFKEFRSNA--T----------VTYTPMEVFTVKQGHSYRF 249 (695)
Q Consensus 184 ~l~l~dw~~~~~~~~~~~~~~-~-~~~~~~~~~lING~~~~~~~~~~~--~----------~~~~~~~~~~v~~G~~~rl 249 (695)
+|+|+||+++...+....... . .....++++||||++++.+..... . ........++|++|++|||
T Consensus 136 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~Rl 215 (541)
T TIGR03388 136 NLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRL 215 (541)
T ss_pred EEEeecccCCCHHHHHhhcccCCCcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEE
Confidence 999999999876443221111 1 111467999999998864311000 0 0011224689999999999
Q ss_pred EEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCC-cceEEEEeeccCCCcccCCcce
Q psy978 250 RIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHV-GNYWIKMRGLMDCDERFTSAYQ 328 (695)
Q Consensus 250 RliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~-g~Y~Ir~~~~~~~~~~~~~~~~ 328 (695)
||||+++.. .+.|+|+||+|+|||+||.+++|+.++.|.|++||||||+|++++++ ++||||+.....+. .....
T Consensus 216 RliNa~~~~-~~~~~id~h~~~VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~---~~~~~ 291 (541)
T TIGR03388 216 RIASTTALA-ALNFAIEGHKLTVVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP---NTPPG 291 (541)
T ss_pred EEEcccccc-eEEEEECCCEEEEEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC---CCccE
Confidence 999999886 89999999999999999999999999999999999999999999865 58999987654432 13457
Q ss_pred EEEEEEcCCCCCC-CCC----CccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEEeee
Q psy978 329 TAVLRYEGAPDES-PAG----EVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFY 403 (695)
Q Consensus 329 ~ail~Y~~~~~~~-p~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~ 403 (695)
.|||+|.++.... |.. .+.+.+.. ... ......+... .....+..+|.++++.....
T Consensus 292 ~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~-------------~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 353 (541)
T TIGR03388 292 LTVLNYYPNSPSRLPPTPPPVTPAWDDFD-------------RSK-AFSLAIKAAM----GSPKPPETSDRRIVLLNTQN 353 (541)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCccccc-------------hhh-ccchhhhccc----cCCCCCCCCCcEEEEeccCc
Confidence 8999998754322 110 11111100 000 0000001000 00112234566655432211
Q ss_pred ecCCCCcccccccccccccccccccccccCCccccCCCCccccccccCCcccccc---------CCccCCC--CCCCccc
Q psy978 404 EIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCS---------NLTTDRC--ADSYCEC 472 (695)
Q Consensus 404 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~---------~~~~~~~--~~~~~~~ 472 (695)
. ......|.|||++|..|+.|+|.+........+.. ......| ....|.|
T Consensus 354 ~-------------------~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (541)
T TIGR03388 354 K-------------------INGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTG 414 (541)
T ss_pred c-------------------cCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccC
Confidence 0 01123688999999999999987654211111100 0000111 1235668
Q ss_pred ceeeeeCCCCEEEEEEEeCCCC---CCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEe
Q psy978 473 TNVVNVPLESVVELIIIDEGVA---YDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTV 549 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~---~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~V 549 (695)
++++.+++|++|||+|+|.... ....||||||||+||||++|. | .++.+ .....+|+.||++|||+.|
T Consensus 415 ~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~-g-~~~~~-------~~~~~~n~~nP~~RDTv~v 485 (541)
T TIGR03388 415 NGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGE-G-KFRPG-------VDEKSYNLKNPPLRNTVVI 485 (541)
T ss_pred ceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeecc-C-CCCcc-------cCcccccCCCCCEeceEEe
Confidence 8999999999999999996421 245899999999999999874 2 34321 0123688999999999999
Q ss_pred CCCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEeccCCCCCCCCCCCCCCC
Q psy978 550 PDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCG 604 (695)
Q Consensus 550 p~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~~~~~~~P~~~p~Cg 604 (695)
|++||++|||+|||||.|+|||||+||++.||+++|.++. ++++++|+++++||
T Consensus 486 p~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~-~~~~~~P~~~~~C~ 539 (541)
T TIGR03388 486 FPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV-EKVGKLPKEALGCG 539 (541)
T ss_pred CCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccc-cccCCCCccccCCC
Confidence 9999999999999999999999999999999999999885 57888999999997
No 10
>KOG1263|consensus
Probab=100.00 E-value=8.3e-97 Score=821.20 Aligned_cols=523 Identities=30% Similarity=0.481 Sum_probs=395.7
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++|.|+|+|+|.. +.++|.++.+++||||+|||+|+|++||+|+|+|+|++ +++++|
T Consensus 26 ~~~~~~~~~v~~~~---------------------~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~-~~~~si 83 (563)
T KOG1263|consen 26 APIRFHTWKVTYGT---------------------ASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRL-DEPFSI 83 (563)
T ss_pred CceEEEEeeEEeee---------------------eccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCC-CCceEE
Confidence 78999999999953 46677899999999999999999999999999999998 599999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcC-CCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNAD-SPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDL 180 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~-~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~ 180 (695)
||||++|+.++|||| +++|||||+||++|+|+|+++ |.||||||+|+++|+++|++|+|||+++.... . +++...
T Consensus 84 hWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p-~--pf~~pd 159 (563)
T KOG1263|consen 84 HWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLP-V--PFPKPD 159 (563)
T ss_pred EeccccccCCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCC-C--CCCCCC
Confidence 999999999999999 999999999999999999996 99999999999999999999999999876532 1 233223
Q ss_pred CceEEEEeeeccc-chhhhhhcccCCCC-CCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCC
Q psy978 181 PEHIMLITDWSHV-LGVEMFNAHHHADG-DNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLN 258 (695)
Q Consensus 181 ~e~~l~l~dw~~~-~~~~~~~~~~~~~~-~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~ 258 (695)
.|++|+|+|||++ +............+ +..+|..+|||+..+. ++| .+.++|++||+|||||+|+|...
T Consensus 160 ~E~~ill~dW~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~-~~~--------~~~l~v~pGktY~lRiiN~g~~~ 230 (563)
T KOG1263|consen 160 KEFTILLGDWYKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFL-YNC--------TPTLTVEPGKTYRLRIINAGLNT 230 (563)
T ss_pred ceeEEEeEeeccccCHHHHHHhhccCCCCCCCCCceEECCCCCcc-cCc--------eeEEEEcCCCEEEEEEEcccccc
Confidence 3899999999996 55443332233333 2348999999997431 222 36899999999999999999887
Q ss_pred ccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCC
Q psy978 259 CPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAP 338 (695)
Q Consensus 259 ~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~ 338 (695)
.+.|+|++|+|+||++||.+++|..+++|.|+|||||||||+|++.+++|||++....++..........++|+|.++.
T Consensus 231 -~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~ 309 (563)
T KOG1263|consen 231 -SLNFSIANHQLTVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGST 309 (563)
T ss_pred -ceEEEECCeEEEEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCc
Confidence 6899999999999999999999999999999999999999999999999999999888765332256789999999843
Q ss_pred CCCCCCCccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEEeeeecCCCCccccccccc
Q psy978 339 DESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGF 418 (695)
Q Consensus 339 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~g~ 418 (695)
.......+.+. .+.+.+....+. .....++.+.........+...++...+..+.....+...
T Consensus 310 ~~~s~~~~~~~-------~~~~~~~~~~s~--~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~-------- 372 (563)
T KOG1263|consen 310 HPASEKLPIYP-------FLPPGNDTAWST--YQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSD-------- 372 (563)
T ss_pred ccCcccCcccc-------cCCcccCchhhh--hhhhcccccccccCcccCCCccccccceeeeccEEeccCC--------
Confidence 21111101000 000000000000 0011122221111222334444444443333222211110
Q ss_pred ccccccccccccccCCccccCCCCcccc-ccccCCccccccCCcc-C--CCC-CCCcccceeeeeCCCCEEEEEEEeCCC
Q psy978 419 DEVKRLEKVRTPQLNHLSFRFPTFPLLS-QRDQIDESTFCSNLTT-D--RCA-DSYCECTNVVNVPLESVVELIIIDEGV 493 (695)
Q Consensus 419 ~~~~~~~~~~~~~iN~~s~~~P~~PlL~-~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~v~~g~vVeivl~N~~~ 493 (695)
...+....++||++||..|+.|++. .++...++.++++... . .-. ...|.|++++.+++++.|||||+|.+.
T Consensus 373 ---~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~ 449 (563)
T KOG1263|consen 373 ---NKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTST 449 (563)
T ss_pred ---CCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCcc
Confidence 0123455789999999999998754 4444444555543221 1 111 114789999999999999999999987
Q ss_pred CCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCceeeEEeecc
Q psy978 494 AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHI 573 (695)
Q Consensus 494 ~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~HCHi 573 (695)
...+.||||||||+|||||+|. | +++.. + .....+|+.+|+.||||.||+|||++|||.|||||+|+||||+
T Consensus 450 ~~~~~hp~HLHG~~F~Vvg~g~-G-~~~~~--~----d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHi 521 (563)
T KOG1263|consen 450 GTQENHPNHLHGYNFYVVGYGF-G-NWDPA--K----DPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHI 521 (563)
T ss_pred ccCCCCccceeceEEEEEEecc-c-ccCcC--c----ChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEec
Confidence 6677899999999999999973 3 45431 1 1226789999999999999999999999999999999999999
Q ss_pred hhhhhcCceEEEEeccCC----CCCCCCCCCCCCCCCCC
Q psy978 574 EFHVETGMALVFKVGEHE----DMAPVPKDFPTCGDYYN 608 (695)
Q Consensus 574 ~~H~~~GM~~v~~V~~~~----~~~~~P~~~p~Cg~~~~ 608 (695)
++|+.+||+++|.|.+.. ++.++|.+.++||.-+.
T Consensus 522 e~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~~~~ 560 (563)
T KOG1263|consen 522 EDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGRASG 560 (563)
T ss_pred HHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccccCC
Confidence 999999999999997743 46789999999998654
No 11
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.2e-96 Score=835.28 Aligned_cols=512 Identities=29% Similarity=0.536 Sum_probs=384.7
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceE
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSI 101 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~si 101 (695)
+++++|+|+|++.. +++||++|.+|+|||++|||+|+|++||+|+|+|+|++..++++|
T Consensus 22 ~~~~~y~~~vt~~~---------------------~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~i 80 (566)
T PLN02604 22 ARIRRYKWEVKYEY---------------------KSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAI 80 (566)
T ss_pred CcEEEEEEEEEEEE---------------------ECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCE
Confidence 68999999999953 478999999999999999999999999999999999986689999
Q ss_pred eeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCCC
Q psy978 102 HWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLP 181 (695)
Q Consensus 102 H~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~ 181 (695)
||||++|.+++||||++++|||||+||++|+|+|+++++||||||||.+.|+.+||+|+|||+++.... . ++++|.
T Consensus 81 H~HG~~~~~~~~~DG~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~-~--p~~~d~- 156 (566)
T PLN02604 81 HWHGIRQIGTPWFDGTEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKS-E--PFSYDY- 156 (566)
T ss_pred EeCCCCCCCCccccCCCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCC-C--ccccCc-
Confidence 999999999999999999999999999999999999999999999999999999999999999875421 1 233444
Q ss_pred ceEEEEeeecccchhhhhhcccCC--CCCCCCCeeeeCCCCCCcccCCC----------CCcCCCCceeEEEecCcEEEE
Q psy978 182 EHIMLITDWSHVLGVEMFNAHHHA--DGDNKPPTILMNGKGRFKEFRSN----------ATVTYTPMEVFTVKQGHSYRF 249 (695)
Q Consensus 182 e~~l~l~dw~~~~~~~~~~~~~~~--~~~~~~~~~lING~~~~~~~~~~----------~~~~~~~~~~~~v~~G~~~rl 249 (695)
|.+|+|+||+++...+........ .....++++||||+|++.+.... ..........++|++|++|||
T Consensus 157 d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~Rl 236 (566)
T PLN02604 157 DRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRL 236 (566)
T ss_pred ceEEEeeccccCCHHHHHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEE
Confidence 579999999998765433321110 11246799999999987431000 000112335799999999999
Q ss_pred EEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCc-ceEEEEeeccCCCcccCCcce
Q psy978 250 RIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVG-NYWIKMRGLMDCDERFTSAYQ 328 (695)
Q Consensus 250 RliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g-~Y~Ir~~~~~~~~~~~~~~~~ 328 (695)
||||+++.. .+.|+|+||+|+|||+||.+++|++++.|.|++||||||+|++++++| +||||+.....+.. ....
T Consensus 237 RlINa~~~~-~~~~sidgH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~---~~~~ 312 (566)
T PLN02604 237 RISSLTALS-ALSFQIEGHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNT---TPPG 312 (566)
T ss_pred EEEeccccc-eEEEEECCCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCC---Ccce
Confidence 999999886 899999999999999999999999999999999999999999998764 89999875544422 3556
Q ss_pred EEEEEEcCCCC-CC-CCCCccCCcccCCccccCCCCCCcCCCcccccccccccCCCCCCCccccCCceEEEEEEeeeecC
Q psy978 329 TAVLRYEGAPD-ES-PAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEID 406 (695)
Q Consensus 329 ~ail~Y~~~~~-~~-p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~ 406 (695)
.|||+|.+... .. +...+. ...++........ . ..+..... . ....+..+|.++.+......
T Consensus 313 ~aIL~Y~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~--~---~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~-- 376 (566)
T PLN02604 313 LAIFNYYPNHPRRSPPTVPPS-------GPLWNDVEPRLNQ--S---LAIKARHG-Y-IHPPPLTSDRVIVLLNTQNE-- 376 (566)
T ss_pred eEEEEECCCCCCCCCCCCCCC-------CCcccccchhhcc--h---hccccccc-C-cCCCCCCCCeEEEEeccccc--
Confidence 89999986432 11 111110 0000000000000 0 00000000 0 11123345655554222110
Q ss_pred CCCcccccccccccccccccccccccCCccccCCCCccccccccCCccccccCCcc------------CCCCCCCcccce
Q psy978 407 NPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTT------------DRCADSYCECTN 474 (695)
Q Consensus 407 ~~~~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ 474 (695)
....+.|.||+++|..|+.|+|.+.+....+.||..... ..|....+.+.+
T Consensus 377 -----------------~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (566)
T PLN02604 377 -----------------VNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDS 439 (566)
T ss_pred -----------------cCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCce
Confidence 011347899999999999999887665444555532111 012233456788
Q ss_pred eeeeCCCCEEEEEEEeCCCC---CCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC
Q psy978 475 VVNVPLESVVELIIIDEGVA---YDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD 551 (695)
Q Consensus 475 ~~~v~~g~vVeivl~N~~~~---~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~ 551 (695)
++.++.|++||++|+|.... ....||||||||+||||++|. | .++.. .....+|+.||++|||+.||+
T Consensus 440 v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~-G-~~~~~-------~~~~~~nl~nP~rRDTv~vp~ 510 (566)
T PLN02604 440 IYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGE-G-KFNMS-------SDPKKYNLVDPIMKNTVPVHP 510 (566)
T ss_pred EEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecC-C-CCCcc-------ccccccCCCCCCccceEEeCC
Confidence 99999999999999997521 245799999999999999884 2 34321 112468899999999999999
Q ss_pred CCEEEEEEEecCceeeEEeecchhhhhcCceEEEEeccCCCCCCCCCCCCCCCC
Q psy978 552 GGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHEDMAPVPKDFPTCGD 605 (695)
Q Consensus 552 ~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~~~~~~~P~~~p~Cg~ 605 (695)
+||++|||+|||||.|+|||||+||++.||+++|.++. ++++++|..+++|+.
T Consensus 511 ~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~-~~~~~~p~~~~~C~~ 563 (566)
T PLN02604 511 YGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGI-ERVGKLPSSIMGCGE 563 (566)
T ss_pred CceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeCh-hhccCCCCCcCcccc
Confidence 99999999999999999999999999999999999885 488899999999974
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=2e-92 Score=798.30 Aligned_cols=496 Identities=26% Similarity=0.389 Sum_probs=359.4
Q ss_pred EEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCC
Q psy978 26 TYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHG 105 (695)
Q Consensus 26 ~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HG 105 (695)
.|+|+|++.. +++||++|.+++||||+|||+|++++||+|+|+|+|+|..++++|||||
T Consensus 10 ~~~l~v~~~~---------------------~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHG 68 (538)
T TIGR03390 10 DHILRVTSDN---------------------IKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHG 68 (538)
T ss_pred cEEEEEEEeE---------------------eccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCC
Confidence 4889999853 4789999999999999999999999999999999999976899999999
Q ss_pred CccCCCCCCCCCCCccccCCCCCCeEEEEEEc--CCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCCCce
Q psy978 106 HHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA--DSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEH 183 (695)
Q Consensus 106 l~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~--~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e~ 183 (695)
++|++++||||+|++|||||+||++|+|+|++ +++||||||||.+.|+. ||+|+|||++++.. .+++|. |+
T Consensus 69 i~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~-----~~~~d~-e~ 141 (538)
T TIGR03390 69 LTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPP-----PYKYDD-ER 141 (538)
T ss_pred CCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCcc-----CCCccC-cE
Confidence 99999999999999999999999999999997 48999999999999987 59999999986431 245555 78
Q ss_pred EEEEeeecccchhhhhhcccCCC--CCCCCCeeeeCCCCCCcccCC-CCCcCCCCceeEEEecCcEEEEEEEeCCCCCcc
Q psy978 184 IMLITDWSHVLGVEMFNAHHHAD--GDNKPPTILMNGKGRFKEFRS-NATVTYTPMEVFTVKQGHSYRFRIINAGYLNCP 260 (695)
Q Consensus 184 ~l~l~dw~~~~~~~~~~~~~~~~--~~~~~~~~lING~~~~~~~~~-~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~ 260 (695)
+|+|+||+++...+......... ....++++||||++.+.++.. ......+..+.++|++|++|||||||++... .
T Consensus 142 ~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~-~ 220 (538)
T TIGR03390 142 ILLVSDFFSATDEEIEQGLLSTPFTWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALS-L 220 (538)
T ss_pred EEEEeCCCCCCHHHHHhhhhccCCccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCce-E
Confidence 99999999987654332111111 124568999999975422100 0011122346899999999999999999987 7
Q ss_pred EEEEEcCcc-eeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCC-------CcceEEEEeeccCCCcccCCcceEEEE
Q psy978 261 IELSIANHT-LTAINSDGGDIKPISVGSIVSYAGERWDFILNATHH-------VGNYWIKMRGLMDCDERFTSAYQTAVL 332 (695)
Q Consensus 261 ~~~~i~gh~-~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~-------~g~Y~Ir~~~~~~~~~~~~~~~~~ail 332 (695)
+.|+|+||+ |+|||+||.+++|+.++.|.|++||||||+|+++++ +++||||+.....+. .....|||
T Consensus 221 ~~~~idgH~~~~VIa~DG~~~~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~----~~~~~aiL 296 (538)
T TIGR03390 221 ISLGIEDHENLTIIEADGSYTKPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK----VYRGYAVL 296 (538)
T ss_pred EEEEECCCCeEEEEEeCCCCCCceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC----cceEEEEE
Confidence 999999999 999999999999999999999999999999999975 489999987543321 23468999
Q ss_pred EEcCCCCCCCCCCccCCcccCCccccCCCCCCcCCCcccccccccccCCC-CCCCccccCCceEEEEEEeeeecCCCCcc
Q psy978 333 RYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISELSTVHSA-SSDVRLQDRANLTFYISYDFYEIDNPHFH 411 (695)
Q Consensus 333 ~Y~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~d~~~~l~~~~~~~~~~~~~ 411 (695)
+|.++........+.... + .....+...+. ..|.++.+. .........+|+++.+.+++....
T Consensus 297 ~Y~~~~~~~~~~~p~~~~-------~-~~~~~~~~~~~---~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----- 360 (538)
T TIGR03390 297 RYRSDKASKLPSVPETPP-------L-PLPNSTYDWLE---YELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----- 360 (538)
T ss_pred EeCCCCCCCCCCCCCCCC-------C-CccCcchhhhh---eeeEecCccccCCCCCCCcCceEEEEEccccccc-----
Confidence 998654322111111000 0 00000100000 112222110 000112345677776665542100
Q ss_pred cccccccccccccccccccccCCccccC--CCCccccccccCCccccccCCccCCCCCCCcccceeeeeCCCCEEEEEEE
Q psy978 412 LSTLYGFDEVKRLEKVRTPQLNHLSFRF--PTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIII 489 (695)
Q Consensus 412 ~~~~~g~~~~~~~~~~~~~~iN~~s~~~--P~~PlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~vVeivl~ 489 (695)
....+.|.|||++|.. |+.|+|.+.......... ..........+...++++.++.|++|||+|+
T Consensus 361 ------------~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~ 427 (538)
T TIGR03390 361 ------------LNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATP-NYTAALANYGFDPETRAFPAKVGEVLEIVWQ 427 (538)
T ss_pred ------------cCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCC-CcccccccCCcCcCceEEEcCCCCEEEEEEE
Confidence 0113468899999986 789998765421100000 0000000011333567889999999999999
Q ss_pred eCCC-----CCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeC----------CCCE
Q psy978 490 DEGV-----AYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVP----------DGGF 554 (695)
Q Consensus 490 N~~~-----~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp----------~~G~ 554 (695)
|... .....||||||||+||||++|. | .++... ....+|+.||++|||+.|| ++||
T Consensus 428 n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~-G-~~~~~~-------~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~ 498 (538)
T TIGR03390 428 NTGSYTGPNGGVDTHPFHAHGRHFYDIGGGD-G-EYNATA-------NEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGW 498 (538)
T ss_pred CCcccccCCCCCCCCCeeecCCcEEEEcccc-c-ccCCcc-------ChhhhccCCCCeecceeeccccccccccCCCce
Confidence 9641 1246899999999999999873 2 343210 1124678899999999997 7899
Q ss_pred EEEEEEecCceeeEEeecchhhhhcCceEEEEeccCCC
Q psy978 555 TIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEHED 592 (695)
Q Consensus 555 ~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~~~ 592 (695)
++|||+|||||+|+|||||+||+.+||+++|.|++.++
T Consensus 499 ~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~ 536 (538)
T TIGR03390 499 RAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDAED 536 (538)
T ss_pred EEEEEEcCCCeeEEEeccchhhhhccceEEEEeCChHH
Confidence 99999999999999999999999999999999987543
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3.6e-73 Score=640.90 Aligned_cols=430 Identities=25% Similarity=0.396 Sum_probs=312.0
Q ss_pred eEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEee
Q psy978 24 TCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHW 103 (695)
Q Consensus 24 ~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~ 103 (695)
-.+|+|++++.. +..||+.+.+|+|||++|||+|++++||+|+|+|+|+|. ++++|||
T Consensus 45 ~~~~~L~v~~~~---------------------~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~-~~tsiHw 102 (587)
T TIGR01480 45 GTEFDLTIGETM---------------------VNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLP-EDTSIHW 102 (587)
T ss_pred CceEEEEEEEEE---------------------EecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCC-CCceEEc
Confidence 478999999854 367899999999999999999999999999999999994 8999999
Q ss_pred CCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCCCce
Q psy978 104 HGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEH 183 (695)
Q Consensus 104 HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e~ 183 (695)
||+++.. +|||+|++|||+|+||++|+|+|++.++||||||||.+.|+.+||+|+|||++++. +| +++|. |+
T Consensus 103 HGl~~~~--~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~-~p----~~~D~-E~ 174 (587)
T TIGR01480 103 HGILLPF--QMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP-DP----VRADR-EH 174 (587)
T ss_pred CCCcCCc--cccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCCcc-cc----CCCCc-eE
Confidence 9999864 69999999999999999999999999999999999999999999999999986543 22 34555 79
Q ss_pred EEEEeeecccchhhhhhccc--------------------CCCC------------------C------CCCCeeeeCCC
Q psy978 184 IMLITDWSHVLGVEMFNAHH--------------------HADG------------------D------NKPPTILMNGK 219 (695)
Q Consensus 184 ~l~l~dw~~~~~~~~~~~~~--------------------~~~~------------------~------~~~~~~lING~ 219 (695)
+|+|+||++.+..+++.... ...| . .....+||||+
T Consensus 175 vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~ 254 (587)
T TIGR01480 175 VVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGT 254 (587)
T ss_pred EEEeeecccCCHHHHHHhhhcccccccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCc
Confidence 99999999866433321100 0000 0 00124789998
Q ss_pred CCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEE
Q psy978 220 GRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFI 299 (695)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVl 299 (695)
..... .++.|++|++|||||||+++.. .+.|+|+||+|+||++||.+++|+.++.|.|++||||||+
T Consensus 255 ~~~~~------------~~~~v~~G~rvRLR~INas~~~-~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVl 321 (587)
T TIGR01480 255 TPAGN------------WTGLFRPGEKVRLRFINGSAMT-YFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVI 321 (587)
T ss_pred cCCCC------------ceEEECCCCEEEEEEEecCCCc-eEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEE
Confidence 64311 4689999999999999999987 7999999999999999999999999999999999999999
Q ss_pred EEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCCC-CCCCCCc----cCCcccCCc---------cc---cCCCC
Q psy978 300 LNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPD-ESPAGEV----DYDATRTSG---------TV---LNPLN 362 (695)
Q Consensus 300 v~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~~-~~p~~~~----~~~~~~~~~---------~~---l~~~~ 362 (695)
|++++ .|.|+|.+..... .....++|++.+... ..|...+ ...+....+ .. +....
T Consensus 322 V~~~~-~g~~~i~a~~~~~------~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 394 (587)
T TIGR01480 322 VEPTG-DDAFTIFAQDSDR------TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMD 394 (587)
T ss_pred EecCC-CceEEEEEEecCC------CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccC
Confidence 99874 4799998754322 345678888765311 1111100 000000000 00 00000
Q ss_pred C----------------------Cc-------------CCC----------------cccccccccccCCCCCCCccccC
Q psy978 363 T----------------------PS-------------RQA----------------KSTLISELSTVHSASSDVRLQDR 391 (695)
Q Consensus 363 ~----------------------~~-------------~~~----------------~~~~~~~l~~~~~~~~~~~~~~~ 391 (695)
. .+ ..+ ......+|+++.+ ......
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~----~~~~~~ 470 (587)
T TIGR01480 395 MSMRAQSNAPMDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFP----PPDGRA 470 (587)
T ss_pred ccccccccccCccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhcccccc----ccCcCC
Confidence 0 00 000 0000001111110 001122
Q ss_pred CceEEEEEEeeeecCCCCcccccccccccccccccccccccCCccccCCCCccccccccCCccccccCCccCCCCCCCcc
Q psy978 392 ANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCE 471 (695)
Q Consensus 392 ~d~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (695)
+++.+.+.+. .....+.|.|||..|..
T Consensus 471 p~r~~~~~L~---------------------g~m~~~~wtiNG~~~~~-------------------------------- 497 (587)
T TIGR01480 471 PGREIELHLT---------------------GNMERFAWSFDGEAFGL-------------------------------- 497 (587)
T ss_pred CCceEEEEEc---------------------CCCceeEEEECCccCCC--------------------------------
Confidence 3333332221 11123467888876520
Q ss_pred cceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC
Q psy978 472 CTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD 551 (695)
Q Consensus 472 ~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~ 551 (695)
...+.++.|++|+|.|.|.. .+.||||||||.|+|+..+ | ..+++|||+.|+|
T Consensus 498 -~~pl~v~~Gervri~l~N~t---~~~HpmHlHG~~f~v~~~~--G---------------------~~~~~~dTv~V~P 550 (587)
T TIGR01480 498 -KTPLRFNYGERLRVVLVNDT---MMAHPIHLHGMWSELEDGQ--G---------------------EFQVRKHTVDVPP 550 (587)
T ss_pred -CCceEecCCCEEEEEEECCC---CCCcceeEcCceeeeecCC--C---------------------cccccCCceeeCC
Confidence 11367999999999999987 6799999999999998532 1 1245899999999
Q ss_pred CCEEEEEEEecCceeeEEeecchhhhhcCceEEEEe
Q psy978 552 GGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587 (695)
Q Consensus 552 ~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V 587 (695)
++.+.++|.|||||.|+||||++.|++.||+..|+|
T Consensus 551 g~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 551 GGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 999999999999999999999999999999999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=1.6e-68 Score=599.12 Aligned_cols=419 Identities=23% Similarity=0.296 Sum_probs=280.0
Q ss_pred CceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCC-
Q psy978 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADS- 139 (695)
Q Consensus 61 G~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~- 139 (695)
|....+|+|||++|||+|+|++||+|+|+|+|+|+ ++|+|||||+++.+ .|||+| ||||+||++|+|+|++++
T Consensus 62 ~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~~--~~DG~p---q~~I~PG~s~~Y~f~~~q~ 135 (523)
T PRK10965 62 KTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVPG--EVDGGP---QGIIAPGGKRTVTFTVDQP 135 (523)
T ss_pred CceeEEEEECCCCCCceEEEECCCEEEEEEEECCC-CCccEEcccccCCC--ccCCCC---CCCCCCCCEEEEEeccCCC
Confidence 34456999999999999999999999999999994 89999999999976 499987 999999999999999985
Q ss_pred CeeeEEEccc----cCcCCCCceeEEEEeCCCCCC-CCCCCCCCCCCceEEEEeeecccchhhhhhcc--cCCCCCCCCC
Q psy978 140 PGTHFWHSHT----GSQRGDGSFGAFIIRKPRPRE-VHAPLYDFDLPEHIMLITDWSHVLGVEMFNAH--HHADGDNKPP 212 (695)
Q Consensus 140 ~GT~wYHsH~----~~q~~~Gl~G~lIV~~~~~~~-p~~~~~d~d~~e~~l~l~dw~~~~~~~~~~~~--~~~~~~~~~~ 212 (695)
+||||||||. +.|+.+||+|+|||+++++.. +....|+.+ |.+|+|+||+++...+..... .....+..++
T Consensus 136 aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~--d~~lvlqD~~~~~~g~~~~~~~~~~~~~g~~gd 213 (523)
T PRK10965 136 AATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVD--DIPVILQDKRFSADGQIDYQLDVMTAAVGWFGD 213 (523)
T ss_pred CceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCc--eeeEEEEeeeeCCCCceeccccccccccCccCC
Confidence 7999999995 799999999999999876432 112234433 799999999986543321111 1112234678
Q ss_pred eeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCccEEEEE-cCcceeEecCCCCcc-ceeEEeEEEE
Q psy978 213 TILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSI-ANHTLTAINSDGGDI-KPISVGSIVS 290 (695)
Q Consensus 213 ~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~~i-~gh~~~Via~DG~~v-~p~~~d~l~l 290 (695)
.+||||+..+ .+.+ ++++|||||||+++.+ .+.|++ ++|+|+|||+||.++ +|..++.|.|
T Consensus 214 ~~lVNG~~~p---------------~~~v-~~~~~RlRliNas~~r-~~~l~~~dg~~~~vIa~DG~~l~~P~~v~~l~l 276 (523)
T PRK10965 214 TLLTNGAIYP---------------QHAA-PRGWLRLRLLNGCNAR-SLNLATSDGRPLYVIASDGGLLAEPVKVSELPI 276 (523)
T ss_pred eEEECCcccc---------------eeec-CCCEEEEEEEeccCCc-eEEEEEcCCceEEEEEeCCCcccCccEeCeEEE
Confidence 9999999654 5666 4679999999999887 789998 899999999999986 8999999999
Q ss_pred cCCceEEEEEEcCCCCcceEEEEeeccCCCc-ccCCcceEEEEEEcCCCCCCCCCCccCCcccCCccccCCCCCCcCCCc
Q psy978 291 YAGERWDFILNATHHVGNYWIKMRGLMDCDE-RFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAK 369 (695)
Q Consensus 291 ~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~-~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~ 369 (695)
+|||||||+|++++ .++|++.......... .........+++........+...|. .+
T Consensus 277 apGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~---------~l----------- 335 (523)
T PRK10965 277 LMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPD---------SL----------- 335 (523)
T ss_pred CccceEEEEEEcCC-CceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCCh---------hh-----------
Confidence 99999999999986 4788887642211100 00001123444443211110000110 00
Q ss_pred ccccccccccCCCCCCCccccCCceEEEEEEeeeec------CCCCcccccccccc------cc--------ccc----c
Q psy978 370 STLISELSTVHSASSDVRLQDRANLTFYISYDFYEI------DNPHFHLSTLYGFD------EV--------KRL----E 425 (695)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~~------~~~~~~~~~~~g~~------~~--------~~~----~ 425 (695)
..+.... ... ....+++.|.+..... ....+.....-++. .. ... +
T Consensus 336 ----~~~~~~~---~~~---~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (523)
T PRK10965 336 ----ASLPALP---SLE---GLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAG 405 (523)
T ss_pred ----ccCCCCC---ccc---ccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 0000000 000 0011222222210000 00000000000000 00 000 0
Q ss_pred c----ccccccCCccccCCCCccccccccCCccccccCCccCCCCCCCcccceeeeeCCCCEEEEEEEeCCCCCCCCCce
Q psy978 426 K----VRTPQLNHLSFRFPTFPLLSQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPF 501 (695)
Q Consensus 426 ~----~~~~~iN~~s~~~P~~PlL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~vVeivl~N~~~~~~~~HPf 501 (695)
. ...++|||++|... ...+.++.|+++.|.|.|.+. .+.|||
T Consensus 406 ~~~~~~~~~~ING~~~~~~--------------------------------~~~~~~~~G~~e~w~i~N~~~--~~~Hp~ 451 (523)
T PRK10965 406 PAFDFHHANKINGKAFDMN--------------------------------KPMFAAKKGQYERWVISGVGD--MMLHPF 451 (523)
T ss_pred ccccccccccCCCeECCCC--------------------------------CcceecCCCCEEEEEEEeCCC--CCccCe
Confidence 0 01246888776411 113678999999999999862 257999
Q ss_pred eecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCEEEE--EEE--ecCceeeEEeecchhhh
Q psy978 502 HLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGFTII--RFH--ATNPGYWLFHCHIEFHV 577 (695)
Q Consensus 502 HLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vI--RF~--AdNPG~Wl~HCHi~~H~ 577 (695)
||||++||||+++ |.+.. ...+.|||||.|++ +.+.| +|. ++++|.|||||||+.|+
T Consensus 452 HlHg~~F~Vl~~~--g~~~~----------------~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~He 512 (523)
T PRK10965 452 HIHGTQFRILSEN--GKPPA----------------AHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHE 512 (523)
T ss_pred EEeCcEEEEEEec--CCCCC----------------ccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhh
Confidence 9999999999875 32111 12356999999988 55554 454 36788999999999999
Q ss_pred hcCceEEEEec
Q psy978 578 ETGMALVFKVG 588 (695)
Q Consensus 578 ~~GM~~v~~V~ 588 (695)
+.|||..|.|.
T Consensus 513 d~GMM~~~~V~ 523 (523)
T PRK10965 513 DTGMMLGFTVS 523 (523)
T ss_pred ccCccceeEeC
Confidence 99999999883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=6.9e-66 Score=573.07 Aligned_cols=389 Identities=20% Similarity=0.219 Sum_probs=272.9
Q ss_pred CceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcC-C
Q psy978 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNAD-S 139 (695)
Q Consensus 61 G~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~-~ 139 (695)
|..+.+|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++... .+||++ ++|+||++|+|+|.++ +
T Consensus 62 g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~-~~ttiHwHGl~~~~~-~~~g~~----~~I~PG~~~~y~f~~~~~ 135 (471)
T PRK10883 62 GTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLT-EPVSMTVSGLQVPGP-LMGGPA----RMMSPNADWAPVLPIRQN 135 (471)
T ss_pred CceeeEEEECCcccCCeEEEECCCEEEEEEEeCCC-CCCceeECCccCCCC-CCCCcc----ccCCCCCeEEEEEecCCC
Confidence 66889999999999999999999999999999994 899999999999875 677764 5899999999999986 4
Q ss_pred CeeeEEEcccc----CcCCCCceeEEEEeCCCCCC-CCCCCCCCCCCceEEEEeeecccchhhhhhcccCCCCCCCCCee
Q psy978 140 PGTHFWHSHTG----SQRGDGSFGAFIIRKPRPRE-VHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTI 214 (695)
Q Consensus 140 ~GT~wYHsH~~----~q~~~Gl~G~lIV~~~~~~~-p~~~~~d~d~~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~ 214 (695)
+||||||||.. .|+.+||+|+|||+++.+.. +....|+.| |++|+|+||..+........ ....++..++.+
T Consensus 136 aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~--d~~l~l~D~~~~~~g~~~~~-~~~~~g~~gd~~ 212 (471)
T PRK10883 136 AATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVD--DFPVIIQDKRLDNFGTPEYN-EPGSGGFVGDTL 212 (471)
T ss_pred ceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCc--ceeEEeeeeeeccCCCcccc-ccccCCccCCee
Confidence 99999999964 59999999999999875432 222234444 79999999998754322111 112234577899
Q ss_pred eeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCccEEEEE-cCcceeEecCCCCcc-ceeEEeEEEEcC
Q psy978 215 LMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSI-ANHTLTAINSDGGDI-KPISVGSIVSYA 292 (695)
Q Consensus 215 lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~~i-~gh~~~Via~DG~~v-~p~~~d~l~l~p 292 (695)
||||+..+ .++|++| +|||||||+++.+ .+.|+| ++|+|+|||+||.++ +|..++.|.|+|
T Consensus 213 lvNG~~~p---------------~~~v~~~-~~RlRliNas~~~-~~~l~l~d~~~~~vIa~DGg~~~~P~~~~~l~l~p 275 (471)
T PRK10883 213 LVNGVQSP---------------YVEVSRG-WVRLRLLNASNAR-RYQLQMSDGRPLHVIAGDQGFLPAPVSVKQLSLAP 275 (471)
T ss_pred EECCccCC---------------eEEecCC-EEEEEEEEccCCc-eEEEEEcCCCeEEEEEeCCCcccCCcEeCeEEECC
Confidence 99999654 7899874 8999999999987 799999 899999999997665 899999999999
Q ss_pred CceEEEEEEcCCCCcceEEEEeeccCCCcc----cCCc---ceEEEEEEcCCCCCCCCCCccCCcccCCccccCCCCCCc
Q psy978 293 GERWDFILNATHHVGNYWIKMRGLMDCDER----FTSA---YQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPS 365 (695)
Q Consensus 293 GeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~----~~~~---~~~ail~Y~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~ 365 (695)
||||||+|++++. +.+.+........... +... ....+++...... ..
T Consensus 276 GeR~dvlVd~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~ 330 (471)
T PRK10883 276 GERREILVDMSNG-DEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGL------------------------LP 330 (471)
T ss_pred CCeEEEEEECCCC-ceEEEECCCccccccccccccCCccccccceeEEEEcccc------------------------cc
Confidence 9999999999763 4555443111000000 0000 0001111110000 00
Q ss_pred CCCcccccccccccCCCCCCCccccCCceEEEEEEeeeecCCCCcccccccccccccccccccccccCCccccCCCCccc
Q psy978 366 RQAKSTLISELSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLL 445 (695)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL 445 (695)
..+.. ....+... . .....++++..+.++. . .+.|||++|....
T Consensus 331 ~~~~~-~p~~l~~~---~---~~~~~~~~~~~~~l~~-----------------------~--~~~INg~~~~~~~---- 374 (471)
T PRK10883 331 LVTDN-LPMRLLPD---E---IMEGSPIRSREISLGD-----------------------D--LPGINGALWDMNR---- 374 (471)
T ss_pred CCCCc-CChhhcCC---C---CCCCCCcceEEEEecC-----------------------C--cCccCCcccCCCc----
Confidence 00000 00000000 0 0011122222222210 0 2368998874211
Q ss_pred cccccCCccccccCCccCCCCCCCcccceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccch
Q psy978 446 SQRDQIDESTFCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDV 525 (695)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~ 525 (695)
..+.+++|++++|.|.|. +.|||||||+.|||++++ |....
T Consensus 375 ----------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~--G~~~~---- 415 (471)
T PRK10883 375 ----------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVN--GAMPF---- 415 (471)
T ss_pred ----------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEec--CCCCC----
Confidence 125689999999999874 379999999999999875 21110
Q ss_pred hcccccccccCCCCCCCccceeEeCCCCEEEEEEEecCce----eeEEeecchhhhhcCceEEEEecc
Q psy978 526 IDMDAKGLIRRNLKDAPLKDTVTVPDGGFTIIRFHATNPG----YWLFHCHIEFHVETGMALVFKVGE 589 (695)
Q Consensus 526 ~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG----~Wl~HCHi~~H~~~GM~~v~~V~~ 589 (695)
.....|||||.|+ +-+.|+++++++| .|||||||+.|+|.|||..|.|.+
T Consensus 416 ------------~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 416 ------------PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ------------ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 1123599999997 4589999999988 799999999999999999999953
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-55 Score=491.17 Aligned_cols=406 Identities=30% Similarity=0.426 Sum_probs=285.4
Q ss_pred eeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEE
Q psy978 56 CIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKF 135 (695)
Q Consensus 56 ~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f 135 (695)
+...++.....+.+||++|||+|++++||+|.|+++|.|. +.|+|||||+..+ +.|||++..+|+++.||++++|.|
T Consensus 44 ~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~-~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f 120 (451)
T COG2132 44 LAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLL-VDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTF 120 (451)
T ss_pred eeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCC-CCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEee
Confidence 3455677889999999999999999999999999999985 3499999998877 479999999999999999999999
Q ss_pred EcCCCeeeEEEccccCcCCCCceeEEEEeCCCCCCCCCCCCCCCCCceEEEEeeecccchhhhhhcccCCCCCCCCCeee
Q psy978 136 NADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAHHHADGDNKPPTIL 215 (695)
Q Consensus 136 ~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~~p~~~~~d~d~~e~~l~l~dw~~~~~~~~~~~~~~~~~~~~~~~~l 215 (695)
+.+++||||||+|.+.|+.+||+|++||++..... +++|. +.++++.+|........+.. .........+..+
T Consensus 121 ~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~-----~~~d~-~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~ 193 (451)
T COG2132 121 TQDVPGTYWYHPHTHGQVYDGLAGALIIEDENSEP-----LGVDD-EPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLL 193 (451)
T ss_pred cCCCCcceEeccCCCchhhcccceeEEEeCCCCCC-----CCCCc-eEEEEEeeeecCCCCccccC-CccccCCCCCeEE
Confidence 99999999999999999999999999999875432 35564 57777778887766444332 2333556778999
Q ss_pred eCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCce
Q psy978 216 MNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGER 295 (695)
Q Consensus 216 ING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR 295 (695)
|||... .+...++.+||||++|++... .+.+++.++.|+||++||.+++|..++.+.|+||||
T Consensus 194 vnG~~~----------------p~~~~~~g~~rlRl~n~~~~~-~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er 256 (451)
T COG2132 194 VNGAIL----------------PFKAVPGGVVRLRLLNAGNAR-TYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGER 256 (451)
T ss_pred ECCCcc----------------ceeecCCCeEEEEEEecCCce-EEEEEecCceEEEEEeCCcCcCceeeeeEEecCcce
Confidence 999643 234445667999999999665 588888899999999999999999999999999999
Q ss_pred EEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcCCCCCCCCCCccCCcccCCccccCCCCCCcCCCccccccc
Q psy978 296 WDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEGAPDESPAGEVDYDATRTSGTVLNPLNTPSRQAKSTLISE 375 (695)
Q Consensus 296 ~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 375 (695)
|||++++++ .+.+.+.... ++. .....+.+.... ...+ ..+.++.. ...+.... .+......
T Consensus 257 ~~v~v~~~~-~~~~~l~~~~--~~~----~~~~~~~~~~~~--~~~~-~~~~~~~~-----~~~~~~d~---~~~~~~~~ 318 (451)
T COG2132 257 YEVLVDMND-GGAVTLTALG--EDM----PDTLKGFRAPNP--ILTP-SYPVLNGR-----VGAPTGDM---ADHAPVGL 318 (451)
T ss_pred EEEEEEcCC-CCeEEEEecc--ccC----Cceeeeeecccc--cccc-cccccccc-----ccCCCcch---hhcccccc
Confidence 999999987 4667666543 110 001111111100 0000 00000000 00000000 00000000
Q ss_pred ccccCCCCCCCccccCCceEEEEEEeeeecCCCCcccccccccccccccccccccccCCccccCCCCccccccccCCccc
Q psy978 376 LSTVHSASSDVRLQDRANLTFYISYDFYEIDNPHFHLSTLYGFDEVKRLEKVRTPQLNHLSFRFPTFPLLSQRDQIDEST 455 (695)
Q Consensus 376 l~~~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~iN~~s~~~P~~PlL~~~~~~~~~~ 455 (695)
+.... .. .....+..+.+. .....+.|.+|+..|..
T Consensus 319 ~~~~~----~~-~~~~~~~~~~l~-----------------------~~~~~~~~~~n~~~~~~---------------- 354 (451)
T COG2132 319 LVTIL----VE-PGPNRDTDFHLI-----------------------GGIGGYVWAINGKAFDD---------------- 354 (451)
T ss_pred chhhc----CC-Ccccccccchhh-----------------------cccccccccccCccCCC----------------
Confidence 00000 00 000000000000 00011234555554421
Q ss_pred cccCCccCCCCCCCcccceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhccccccccc
Q psy978 456 FCSNLTTDRCADSYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIR 535 (695)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~ 535 (695)
....+.++.|++++|+|.|.+ .+.|||||||+.|+|++.+ . .
T Consensus 355 ----------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~--~-----------------~ 396 (451)
T COG2132 355 ----------------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD--A-----------------P 396 (451)
T ss_pred ----------------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC--C-----------------C
Confidence 123578999999999999987 4799999999999999864 0 1
Q ss_pred CCCCCCCccceeEeCCCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEec
Q psy978 536 RNLKDAPLKDTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVG 588 (695)
Q Consensus 536 ~n~~~P~~rDTv~Vp~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~ 588 (695)
+-...+.||||+.|.++..++|||.|++||.|+||||+++|++.|||..+.|.
T Consensus 397 ~~~~~~~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 397 APGAAPGWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred cccccCccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 11234679999999999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=8.3e-45 Score=384.05 Aligned_cols=265 Identities=19% Similarity=0.180 Sum_probs=212.9
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCC-CCce
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLME-ESTS 100 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~-~~~s 100 (695)
+.+.+|+|++++... ..++|+.+.+|+|||++|||+|++++||+|+|+|+|.+.. .+++
T Consensus 25 ~~~~~~~l~a~~~~~--------------------~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~ 84 (311)
T TIGR02376 25 PKVVEVTMTIEEKKM--------------------VIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHN 84 (311)
T ss_pred CcEEEEEEEEEEEEE--------------------EeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCcee
Confidence 788999999998542 1357999999999999999999999999999999999842 5799
Q ss_pred EeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcc----ccCcCCCCceeEEEEeCCCCCCCCCCCC
Q psy978 101 IHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSH----TGSQRGDGSFGAFIIRKPRPREVHAPLY 176 (695)
Q Consensus 101 iH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH----~~~q~~~Gl~G~lIV~~~~~~~p~~~~~ 176 (695)
+||||.. ++||++.++| |+||++++|+|+++++|||||||| +..|+..||+|+|||++++.. +
T Consensus 85 ~h~H~~~-----~~dg~~~~~~--I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~-~----- 151 (311)
T TIGR02376 85 VDFHAAT-----GALGGAALTQ--VNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL-P----- 151 (311)
T ss_pred eeecCCC-----ccCCCCccee--ECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC-c-----
Confidence 9999963 5899999888 999999999999999999999999 467999999999999986421 1
Q ss_pred CCCCCceEEEEeeecccchhhh---hhcccCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEe
Q psy978 177 DFDLPEHIMLITDWSHVLGVEM---FNAHHHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIIN 253 (695)
Q Consensus 177 d~d~~e~~l~l~dw~~~~~~~~---~~~~~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN 253 (695)
+.|+ |++|+++||+++..... +...........++.++|||+..... +.+.+++|+++||||||
T Consensus 152 ~~d~-e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~~------------~~~~v~~G~~~RlRiiN 218 (311)
T TIGR02376 152 EYDK-EYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGALT------------GDNALTAGVGERVLFVH 218 (311)
T ss_pred Ccce-eEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCCCC------------CCcccccCCcEEEEEEc
Confidence 3444 78999999998653211 11000111234678999999943200 24689999999999999
Q ss_pred CCCCCccEEEEEcCcceeEecCCCCccceeE--EeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEE
Q psy978 254 AGYLNCPIELSIANHTLTAINSDGGDIKPIS--VGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAV 331 (695)
Q Consensus 254 a~~~~~~~~~~i~gh~~~Via~DG~~v~p~~--~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ai 331 (695)
++... .+.|+++||.+++|+.||.++.+.. ++++.|+||||+||+|++++ +|.|+|+........ .....|+
T Consensus 219 a~~~~-~~~~~~~g~~~~~v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~----~~g~~~~ 292 (311)
T TIGR02376 219 SQPNR-DSRPHLIGGHGDYVWVTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAF----EKGAAAQ 292 (311)
T ss_pred CCCCC-CCCCeEecCCceEEEECCcccCCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHH----hCCCEEE
Confidence 99866 6889999999999999999998754 89999999999999999997 499999976543321 2236799
Q ss_pred EEEcCCC
Q psy978 332 LRYEGAP 338 (695)
Q Consensus 332 l~Y~~~~ 338 (695)
|.|++..
T Consensus 293 i~~~g~~ 299 (311)
T TIGR02376 293 VKVEGAW 299 (311)
T ss_pred EEECCCC
Confidence 9998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=1e-34 Score=263.39 Aligned_cols=108 Identities=47% Similarity=0.884 Sum_probs=101.9
Q ss_pred CCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc
Q psy978 58 PADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA 137 (695)
Q Consensus 58 ~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~ 137 (695)
..||..+.+|++||++|||+|+|++||+|+|+|+|.| .++++|||||+++...+||||+++++||+|.||++|+|+|++
T Consensus 8 ~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 8 SPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNL-DEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTA 86 (117)
T ss_dssp ETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEES-SSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEE
T ss_pred EeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEecc-ccccccccceeeeeeeeecCCcccccceeEEeecceeeeEee
Confidence 4567679999999999999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred CC-CeeeEEEccccCcCCCCceeEEEEeCC
Q psy978 138 DS-PGTHFWHSHTGSQRGDGSFGAFIIRKP 166 (695)
Q Consensus 138 ~~-~GT~wYHsH~~~q~~~Gl~G~lIV~~~ 166 (695)
.+ +||||||||...|..+||+|+|||+++
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 87 999999999988878999999999975
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.1e-29 Score=236.59 Aligned_cols=109 Identities=42% Similarity=0.749 Sum_probs=95.4
Q ss_pred CCcccceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCcccee
Q psy978 468 SYCECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTV 547 (695)
Q Consensus 468 ~~~~~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv 547 (695)
..+.++.++.++.|++|||+|+|.+ ...|||||||++|+|++++.. ..+. .....+++.+|.+|||+
T Consensus 28 ~~~~~~~~~~~~~g~~v~~~l~N~~---~~~Hp~HlHG~~F~vl~~~~~--~~~~--------~~~~~~~~~~~~~~DTv 94 (138)
T PF07731_consen 28 PFFGNTPVIEVKNGDVVEIVLQNNG---SMPHPFHLHGHSFQVLGRGGG--PWNP--------DDTQSYNPENPGWRDTV 94 (138)
T ss_dssp TSSSTTSEEEEETTSEEEEEEEECT---TSSEEEEETTSEEEEEEETTE--ESTT--------HCGGCCCSSSSSEESEE
T ss_pred ccCCCcceEEEeCCCEEEEEEECCC---CCccceEEEeeEEEeeecCCc--cccc--------ccccccccccCcccccc
Confidence 6678899999999999999999987 569999999999999998732 1111 13456788999999999
Q ss_pred EeCCCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEecc
Q psy978 548 TVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589 (695)
Q Consensus 548 ~Vp~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~ 589 (695)
.|+++|+++|||++||||.|+||||+++|++.|||++|.|.+
T Consensus 95 ~v~~~~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 95 LVPPGGWVVIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETTEEEEEEEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred cccceeEEEEEEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999999999999999999999999975
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.95 E-value=6.2e-27 Score=225.14 Aligned_cols=153 Identities=35% Similarity=0.582 Sum_probs=120.7
Q ss_pred ceEEEEeeecccchhhhhhcccCC-----CCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCC
Q psy978 182 EHIMLITDWSHVLGVEMFNAHHHA-----DGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGY 256 (695)
Q Consensus 182 e~~l~l~dw~~~~~~~~~~~~~~~-----~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~ 256 (695)
|++|+|+||||+.....+...... ..+..+++++|||++.+.+ ..........+.+.|++|++|||||||+++
T Consensus 2 e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~--~~~~~~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 2 EYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDC--SSADYTGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTT--CTTGSTTSTSGEEEEETTTEEEEEEEEESS
T ss_pred eEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCcccccc--ccccccccccceEEEcCCcEEEEEEEeccC
Confidence 799999999998876554422221 1257899999999988743 111112234579999999999999999999
Q ss_pred CCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEeeccCCCcccCCcceEEEEEEcC
Q psy978 257 LNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRGLMDCDERFTSAYQTAVLRYEG 336 (695)
Q Consensus 257 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~~~~~~~~~~~~~ail~Y~~ 336 (695)
.. .+.|+|+||+|+|||+||.+++|..+++|.|+|||||||+|++++++|+|||++.....+..........|||+|.+
T Consensus 80 ~~-~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 ST-SFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S--BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred Ce-eEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 86 79999999999999999999999999999999999999999999888999999974333333334567899999986
Q ss_pred C
Q psy978 337 A 337 (695)
Q Consensus 337 ~ 337 (695)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 3
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.80 E-value=3.3e-19 Score=167.96 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=86.5
Q ss_pred CCCCceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCC--CCCceEeeCCCccCCCCCCCCCCCccccCCCCC---C-e-
Q psy978 58 PADGVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLM--EESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPR---S-T- 130 (695)
Q Consensus 58 ~~dG~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~--~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG---~-~- 130 (695)
.+.++...-+.++| .+||+|+|++||+|+|+|+|.+. ..++.||+||......+.|||++.++||+|.|+ . .
T Consensus 35 ~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 35 PMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred cCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccc
Confidence 45677788889999 67899999999999999999963 345667777766555556999999999999884 1 1
Q ss_pred -EEEEEEcCCCeeeEEEccccCcCCCCceeEEEEe
Q psy978 131 -FRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIR 164 (695)
Q Consensus 131 -~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~ 164 (695)
.++.|++.++||||||||...|+.+||+|+|||+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 2445555699999999999999999999999995
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.59 E-value=2.4e-15 Score=171.19 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=87.0
Q ss_pred CceEEEEEEcCCCCCC--eEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCC---CCccccCCCCCCeEEEEE
Q psy978 61 GVKRAITVVNRQLPGP--AVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGV---PHLTQCPVPPRSTFRYKF 135 (695)
Q Consensus 61 G~~~~~~~iNG~~PGP--~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~---p~vtqcpI~PG~~~tY~f 135 (695)
+.++.+|+|||+.+++ .|++++||+|+|++.|.+ ..++.|||||+..... ..||. ...| ..|.||++++|+|
T Consensus 482 ~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t-~~~HpmHlHG~~f~v~-~~~G~~~~~~dT-v~V~Pg~t~~~~f 558 (587)
T TIGR01480 482 NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDT-MMAHPIHLHGMWSELE-DGQGEFQVRKHT-VDVPPGGKRSFRV 558 (587)
T ss_pred CCceeEEEECCccCCCCCceEecCCCEEEEEEECCC-CCCcceeEcCceeeee-cCCCcccccCCc-eeeCCCCEEEEEE
Confidence 3568889999999875 799999999999999998 5899999999986543 23563 2223 6899999999999
Q ss_pred EcCCCeeeEEEccccCcCCCCceeEEEEe
Q psy978 136 NADSPGTHFWHSHTGSQRGDGSFGAFIIR 164 (695)
Q Consensus 136 ~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~ 164 (695)
.++++|+||||||...|...||++.+.|.
T Consensus 559 ~ad~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 559 TADALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred ECCCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 99999999999999999999999999873
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.49 E-value=9.2e-12 Score=132.34 Aligned_cols=91 Identities=19% Similarity=0.208 Sum_probs=76.1
Q ss_pred eeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCC--ccceeEeCCCC
Q psy978 476 VNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAP--LKDTVTVPDGG 553 (695)
Q Consensus 476 ~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~--~rDTv~Vp~~G 553 (695)
+.++.|+++.|.|+|.+. ...+.||+||++|++|..+ |.. ..|+ ..||+.|.+|.
T Consensus 204 ~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~D--G~~-------------------~~~~~~~~~~~~i~PG~ 260 (311)
T TIGR02376 204 NALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVT--GKF-------------------ANPPNRDVETWFIPGGS 260 (311)
T ss_pred cccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEEC--Ccc-------------------cCCCCCCcceEEECCCc
Confidence 468889999999999873 4579999999999999874 321 1222 36999999999
Q ss_pred EEEEEEEecCceeeEEeecchhhh-hcCceEEEEecc
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHV-ETGMALVFKVGE 589 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~-~~GM~~v~~V~~ 589 (695)
-..|-|+++.||.|++|||...|. ..||+++|.+..
T Consensus 261 R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 261 AAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred eEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 999999999999999999999988 779999998843
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.18 E-value=1.7e-09 Score=122.63 Aligned_cols=242 Identities=14% Similarity=0.100 Sum_probs=143.3
Q ss_pred CceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEee-CCCccCCCCCCCCCCC-----ccccCCCCCCeEEEE
Q psy978 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHW-HGHHQVDSPYMDGVPH-----LTQCPVPPRSTFRYK 134 (695)
Q Consensus 61 G~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~-HGl~~~~~~~~DG~p~-----vtqcpI~PG~~~tY~ 134 (695)
|.....++|||+. .|.+.+. |.++++|+.|........+.+ .|...... ..||.+. +++..|.|||+++..
T Consensus 209 g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vI-a~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 209 GWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVI-ASDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred CccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEE-EeCCCcccCccEeCeEEECccceEEEE
Confidence 4455689999995 6899885 679999999998666677776 45432222 3788542 344568999999999
Q ss_pred EEcCCCeeeEEEccccCcCCCC------ceeEEEEeCCCCC----CCCCC----CCCC--CCC--ceEEEEeeecccchh
Q psy978 135 FNADSPGTHFWHSHTGSQRGDG------SFGAFIIRKPRPR----EVHAP----LYDF--DLP--EHIMLITDWSHVLGV 196 (695)
Q Consensus 135 f~~~~~GT~wYHsH~~~q~~~G------l~G~lIV~~~~~~----~p~~~----~~d~--d~~--e~~l~l~dw~~~~~~ 196 (695)
+++.+.|.++...-...+...+ -+-.+.|...... .|... .... +.. +..|.+..+......
T Consensus 286 v~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m 365 (523)
T PRK10965 286 VDTSDGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGM 365 (523)
T ss_pred EEcCCCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhh
Confidence 9888778777766422111100 1123344421110 11100 0000 100 122222211110000
Q ss_pred h----hhh----ccc------CC--C--------C----CC---CCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCc
Q psy978 197 E----MFN----AHH------HA--D--------G----DN---KPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGH 245 (695)
Q Consensus 197 ~----~~~----~~~------~~--~--------~----~~---~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~ 245 (695)
. .+. ... .. . + +. ....++|||+.... ..+.++++.|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~~-----------~~~~~~~~~G~ 434 (523)
T PRK10965 366 QMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFDM-----------NKPMFAAKKGQ 434 (523)
T ss_pred hhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECCC-----------CCcceecCCCC
Confidence 0 000 000 00 0 0 00 01124899995431 11357899999
Q ss_pred EEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccc---eeEEeEEEEcCCceEEEEEEcCCC---CcceEEEEeeccC
Q psy978 246 SYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIK---PISVGSIVSYAGERWDFILNATHH---VGNYWIKMRGLMD 318 (695)
Q Consensus 246 ~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~---p~~~d~l~l~pGeR~dVlv~a~~~---~g~Y~Ir~~~~~~ 318 (695)
+.+|+|+|.+... .+.|||||+.|+|++.||.+.. +.+.|+|.|.+ +++.++++++.+ .|.|-+.++-+.-
T Consensus 435 ~e~w~i~N~~~~~-~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~H 511 (523)
T PRK10965 435 YERWVISGVGDMM-LHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEH 511 (523)
T ss_pred EEEEEEEeCCCCC-ccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhh
Confidence 9999999998532 3569999999999999999875 35789999976 889999999853 3677777765543
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.09 E-value=7.1e-09 Score=116.45 Aligned_cols=227 Identities=13% Similarity=0.026 Sum_probs=136.3
Q ss_pred CceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEee-CCCccCCCCCCCCCCC-----ccccCCCCCCeEEEE
Q psy978 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHW-HGHHQVDSPYMDGVPH-----LTQCPVPPRSTFRYK 134 (695)
Q Consensus 61 G~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~-HGl~~~~~~~~DG~p~-----vtqcpI~PG~~~tY~ 134 (695)
|.....++|||+. .|.|.|+.| ++++|+.|........+++ .|...... ..||.+. +++-.|.||++++.-
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vI-a~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVI-AGDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEE-EeCCCcccCCcEeCeEEECCCCeEEEE
Confidence 4556789999985 699999875 8999999998777888888 66533222 3686442 345668999999999
Q ss_pred EEcCCCeeeEEEccccCcCCCCcee------------EEEEeCCCCCCCCCCCCCCCCCceEEEEeeecccchhhhhhcc
Q psy978 135 FNADSPGTHFWHSHTGSQRGDGSFG------------AFIIRKPRPREVHAPLYDFDLPEHIMLITDWSHVLGVEMFNAH 202 (695)
Q Consensus 135 f~~~~~GT~wYHsH~~~q~~~Gl~G------------~lIV~~~~~~~p~~~~~d~d~~e~~l~l~dw~~~~~~~~~~~~ 202 (695)
.++.+.+.+..++-......+++.+ .+-++......+. +...+...+. .........+...-.
T Consensus 283 Vd~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~l~~-~~~~~~~~~~~~~~~ 357 (471)
T PRK10883 283 VDMSNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLV----TDNLPMRLLP-DEIMEGSPIRSREIS 357 (471)
T ss_pred EECCCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCC----CCcCChhhcC-CCCCCCCCcceEEEE
Confidence 9987777777776321111111111 1112221100000 0000000000 000000000000000
Q ss_pred cCCCCCCCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccce
Q psy978 203 HHADGDNKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKP 282 (695)
Q Consensus 203 ~~~~~~~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p 282 (695)
. ..+.++|||+.+.. ....+.++.|++++|+|.|.. . +-||||+|.|+|++.||....|
T Consensus 358 l------~~~~~~INg~~~~~-----------~~~~~~~~~g~~e~W~~~n~~--~--HP~HlHg~~FqVl~~~G~~~~~ 416 (471)
T PRK10883 358 L------GDDLPGINGALWDM-----------NRIDVTAQQGTWERWTVRADM--P--QAFHIEGVMFLIRNVNGAMPFP 416 (471)
T ss_pred e------cCCcCccCCcccCC-----------CcceeecCCCCEEEEEEECCC--C--cCEeECCccEEEEEecCCCCCc
Confidence 0 01234799995431 112467999999999998863 3 4599999999999999986644
Q ss_pred ---eEEeEEEEcCCceEEEEEEcCCCCc---ceEEEEeeccC
Q psy978 283 ---ISVGSIVSYAGERWDFILNATHHVG---NYWIKMRGLMD 318 (695)
Q Consensus 283 ---~~~d~l~l~pGeR~dVlv~a~~~~g---~Y~Ir~~~~~~ 318 (695)
.+.|+|.+ + +++.|++++++..+ .|-+.++-+.-
T Consensus 417 ~~~gwkDTV~v-~-~~v~i~~~f~~~~~~~~~~m~HCHiLeH 456 (471)
T PRK10883 417 EDRGWKDTVWV-D-GQVELLVYFGQPSWAHFPFLFYSQTLEM 456 (471)
T ss_pred cccCcCcEEEc-C-CeEEEEEEecCCCCCCCcEEeecccccc
Confidence 45799999 3 57999999997655 57666665543
No 26
>PLN02835 oxidoreductase
Probab=99.04 E-value=1.7e-08 Score=115.02 Aligned_cols=247 Identities=10% Similarity=0.055 Sum_probs=148.5
Q ss_pred EEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCC----ccccCCCCCCeEEEEEEcCC
Q psy978 64 RAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH----LTQCPVPPRSTFRYKFNADS 139 (695)
Q Consensus 64 ~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~----vtqcpI~PG~~~tY~f~~~~ 139 (695)
-..++|||+.. |+++|++|+++++|++|........+|+.|..+... ..||.+- +.+-.|.|||++...+++++
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI-~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLV-EVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEE-EECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 35789999974 899999999999999999877789999999887544 6899652 33456999999999999975
Q ss_pred -CeeeEEEccccCc-CCCCceeEEEEeCCCCC----CCCCCCCCC--CCC---ceEEEEeeecccchhh-hhh---c--c
Q psy978 140 -PGTHFWHSHTGSQ-RGDGSFGAFIIRKPRPR----EVHAPLYDF--DLP---EHIMLITDWSHVLGVE-MFN---A--H 202 (695)
Q Consensus 140 -~GT~wYHsH~~~q-~~~Gl~G~lIV~~~~~~----~p~~~~~d~--d~~---e~~l~l~dw~~~~~~~-~~~---~--~ 202 (695)
+|.||.+.-.... ......+.|-.+..... .|.....+. +.. .....+.......... ... . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 7999998643211 11112333333221110 011001100 000 0000011110000000 000 0 0
Q ss_pred ----cCC-CC-CCCCCeeeeCCCCCCcc---------------cCCC-------CCcCCCCceeEEEecCcEEEEEEEeC
Q psy978 203 ----HHA-DG-DNKPPTILMNGKGRFKE---------------FRSN-------ATVTYTPMEVFTVKQGHSYRFRIINA 254 (695)
Q Consensus 203 ----~~~-~~-~~~~~~~lING~~~~~~---------------~~~~-------~~~~~~~~~~~~v~~G~~~rlRliNa 254 (695)
... .. ......|.|||...... +... ..........+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 00 00113577888753210 0000 00001112356778899999999998
Q ss_pred CCCCccEEEEEcCcceeEecC-CCCc----------cceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEee
Q psy978 255 GYLNCPIELSIANHTLTAINS-DGGD----------IKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRG 315 (695)
Q Consensus 255 ~~~~~~~~~~i~gh~~~Via~-DG~~----------v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~ 315 (695)
....|+ ||+|||.|.|++. +|.+ ..|...|++.+.++...-|-+.||+| |.+.|+.+-
T Consensus 429 ~~~~HP--~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNP-G~Wl~HCHi 497 (539)
T PLN02835 429 EKTMQS--WHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQ-GMWNMRSAI 497 (539)
T ss_pred CCCCCC--CCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcCC-EEeeeeecc
Confidence 766554 9999999999997 5533 34899999999999999999999977 877777764
No 27
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.04 E-value=2.5e-08 Score=114.26 Aligned_cols=250 Identities=13% Similarity=0.119 Sum_probs=144.8
Q ss_pred EEEEEcCCC-C--------CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeE
Q psy978 65 AITVVNRQL-P--------GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTF 131 (695)
Q Consensus 65 ~~~~iNG~~-P--------GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~ 131 (695)
..++|||+. + -++|.|++|+++++|++|........+|.+|..+... +.||.+ .+..-.|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VI-a~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVV-EVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEE-EeCCcccCceEeCeEEecCCCEE
Confidence 468999984 1 1489999999999999999866778899999876554 689975 2334568999999
Q ss_pred EEEEEcCC-CeeeEEEcccc--CcC--C-CCceeEEEEeCCCCCC-CCCC---CCCCCCC-----c--eEEEEee--ecc
Q psy978 132 RYKFNADS-PGTHFWHSHTG--SQR--G-DGSFGAFIIRKPRPRE-VHAP---LYDFDLP-----E--HIMLITD--WSH 192 (695)
Q Consensus 132 tY~f~~~~-~GT~wYHsH~~--~q~--~-~Gl~G~lIV~~~~~~~-p~~~---~~d~d~~-----e--~~l~l~d--w~~ 192 (695)
+..+++++ +|.||.+++.. .+. . ....+.|...+..... |... .++.... + ..+.... +..
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 99999976 89999998743 111 1 1122333332221111 1100 0110000 0 0000000 000
Q ss_pred -cchhh-hh-hcccCC---------CCCCCCCeeeeCCCCCCcc-------------------cCCC--------CC---
Q psy978 193 -VLGVE-MF-NAHHHA---------DGDNKPPTILMNGKGRFKE-------------------FRSN--------AT--- 230 (695)
Q Consensus 193 -~~~~~-~~-~~~~~~---------~~~~~~~~~lING~~~~~~-------------------~~~~--------~~--- 230 (695)
..... .+ ...... .+....-.|.|||...... +... ..
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 00 000000 0001112357777642100 0000 00
Q ss_pred ---cCCCCceeEEEecCcEEEEEEEeCCCC-CccEEEEEcCcceeEecCC-CCc-----------cceeEEeEEEEcCCc
Q psy978 231 ---VTYTPMEVFTVKQGHSYRFRIINAGYL-NCPIELSIANHTLTAINSD-GGD-----------IKPISVGSIVSYAGE 294 (695)
Q Consensus 231 ---~~~~~~~~~~v~~G~~~rlRliNa~~~-~~~~~~~i~gh~~~Via~D-G~~-----------v~p~~~d~l~l~pGe 294 (695)
........+.++.|++++|.|.|.+.. ...+-||+|||.|.|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 000012357889999999999997532 1134599999999999886 322 247789999999999
Q ss_pred eEEEEEEcCCCCcceEEEEeec
Q psy978 295 RWDFILNATHHVGNYWIKMRGL 316 (695)
Q Consensus 295 R~dVlv~a~~~~g~Y~Ir~~~~ 316 (695)
.+-|-++++++ |-+.++.+-.
T Consensus 486 ~vvirf~adNP-G~W~~HCHi~ 506 (539)
T TIGR03389 486 WAAIRFVADNP-GVWFMHCHLE 506 (539)
T ss_pred eEEEEEecCCC-eEEEEEeccc
Confidence 99999999977 7766776643
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.00 E-value=2.2e-09 Score=98.18 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=74.4
Q ss_pred CceEEEEEEEEEEEeecccccCCCCCCcccCcceeeCCCCceEEEE-EEcCCCCCCeEEEEeCCEEEEEEeeCCC-CCCc
Q psy978 22 TRTCTYDFHIEWYYTMSKACYDCPFNVTDCGRLHCIPADGVKRAIT-VVNRQLPGPAVDVCVGDHVIVNLHNGLM-EEST 99 (695)
Q Consensus 22 ~~~~~~~~~v~~~~~~~~~~~~~~~n~t~~~~~~~~~~dG~~~~~~-~iNG~~PGP~I~v~~GD~v~V~v~N~l~-~~~~ 99 (695)
+..++|+.+|+-|.+.-+. ....|+....| +.|+++..+.|+|++||+|+|+|.|... ....
T Consensus 22 ~~~~~f~~~i~~~~~~~~~----------------~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f 85 (135)
T TIGR03096 22 AAEQSFTVVINAYDTTIPE----------------LNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGF 85 (135)
T ss_pred hccceeEEEEeccccEeeE----------------EEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccce
Confidence 5667899999966653321 23467766655 9999999999999999999999999863 1223
Q ss_pred eEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcccc
Q psy978 100 SIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTG 150 (695)
Q Consensus 100 siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~ 150 (695)
.+++||+ . --|+||++.+|+|+++++|+|||||-..
T Consensus 86 ~i~~~gi-----------s----~~I~pGet~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 86 SIDAYGI-----------S----EVIKAGETKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred EECCCCc-----------c----eEECCCCeEEEEEECCCCEEEEEeCCCC
Confidence 4444432 1 2489999999999999999999999755
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=7.8e-08 Score=108.11 Aligned_cols=236 Identities=17% Similarity=0.129 Sum_probs=147.9
Q ss_pred CceEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEEEE
Q psy978 61 GVKRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYKFN 136 (695)
Q Consensus 61 G~~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~f~ 136 (695)
|.......+||+. -|.+. .++..+++|+.|........+++.|..+... ..||.+ .+.+-.|.|||++....+
T Consensus 186 ~~~g~~~~vnG~~-~p~~~-~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi-~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LPFKA-VPGGVVRLRLLNAGNARTYHLALGGGPLTVI-AVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cceee-cCCCeEEEEEEecCCceEEEEEecCceEEEE-EeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4456677788843 24454 4555599999999755667777777665544 578876 677788999999999999
Q ss_pred cCCCeeeEEEccccCcCCCCceeEEEEeCCCCC-CCC------CCCCCC-CCCceEEEEeeecccchhhhhhcccCCCCC
Q psy978 137 ADSPGTHFWHSHTGSQRGDGSFGAFIIRKPRPR-EVH------APLYDF-DLPEHIMLITDWSHVLGVEMFNAHHHADGD 208 (695)
Q Consensus 137 ~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~~~~-~p~------~~~~d~-d~~e~~l~l~dw~~~~~~~~~~~~~~~~~~ 208 (695)
....|++-+.|.. .+..+-+.+..-....... .+. ....|. |. .....+.....+... .........+.
T Consensus 263 ~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~~-~~~~~~~l~~~ 339 (451)
T COG2132 263 MNDGGAVTLTALG-EDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADH-APVGLLVTILVEPGP-NRDTDFHLIGG 339 (451)
T ss_pred cCCCCeEEEEecc-ccCCceeeeeeccccccccccccccccccCCCcchhhc-cccccchhhcCCCcc-cccccchhhcc
Confidence 8888999999987 3333333333322211100 000 000110 10 111111111111110 00000001112
Q ss_pred CCCCeeeeCCCCCCcccCCCCCcCCCCceeEEEecCcEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCcc---ceeEE
Q psy978 209 NKPPTILMNGKGRFKEFRSNATVTYTPMEVFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDI---KPISV 285 (695)
Q Consensus 209 ~~~~~~lING~~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v---~p~~~ 285 (695)
.....+.+||+.... ....+.++.|+++||+|.|-+... +.||||||.|.|++.| ... .+...
T Consensus 340 ~~~~~~~~n~~~~~~-----------~~~~~~~~~G~~~~~~i~n~~~~~--HP~HlHg~~F~v~~~~-~~~~~~~~~~k 405 (451)
T COG2132 340 IGGYVWAINGKAFDD-----------NRVTLIAKAGTRERWVLTNDTPMP--HPFHLHGHFFQVLSGD-APAPGAAPGWK 405 (451)
T ss_pred cccccccccCccCCC-----------CcCceeecCCCEEEEEEECCCCCc--cCeEEcCceEEEEecC-CCcccccCccc
Confidence 233457788875431 024788999999999999999865 4599999999999999 322 35789
Q ss_pred eEEEEcCCceEEEEEEcCCCCcceEEEEeecc
Q psy978 286 GSIVSYAGERWDFILNATHHVGNYWIKMRGLM 317 (695)
Q Consensus 286 d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~~~ 317 (695)
|++.+.||++..+.++++.+ |.|.+..+.+.
T Consensus 406 DTv~v~~~~~~~v~~~a~~~-g~~~~HCH~l~ 436 (451)
T COG2132 406 DTVLVAPGERLLVRFDADYP-GPWMFHCHILE 436 (451)
T ss_pred eEEEeCCCeEEEEEEeCCCC-CceEEeccchh
Confidence 99999999999999999987 58877766543
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=98.73 E-value=1.7e-06 Score=98.66 Aligned_cols=244 Identities=11% Similarity=0.106 Sum_probs=144.8
Q ss_pred EEEEEcCCC-CCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEEEEcCC
Q psy978 65 AITVVNRQL-PGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYKFNADS 139 (695)
Q Consensus 65 ~~~~iNG~~-PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~f~~~~ 139 (695)
..++|||+. ..|+|+|++|+++++|++|........++..|..+... ..||.+ -+.+-.|.|||+++..+++++
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVI-a~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLV-ETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEE-EECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 468999995 35799999999999999999876678888888876554 589864 344567999999999999964
Q ss_pred -C-e---eeEEEcccc--CcCCCCceeEEEEeCCCCCC---CCCC--CC-CCCCC-ceEEE----Eeeecccch-hhh--
Q psy978 140 -P-G---THFWHSHTG--SQRGDGSFGAFIIRKPRPRE---VHAP--LY-DFDLP-EHIML----ITDWSHVLG-VEM-- 198 (695)
Q Consensus 140 -~-G---T~wYHsH~~--~q~~~Gl~G~lIV~~~~~~~---p~~~--~~-d~d~~-e~~l~----l~dw~~~~~-~~~-- 198 (695)
+ | .||.++-.. .+...| . +++.++..... |... .+ +.... +..+. +.-...... ...
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-V-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-E-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 3 4 899987742 222222 2 33344322111 1100 00 11000 00000 000000000 000
Q ss_pred h-h----cc--cCCCC--CCCCCeeeeCCCCCCcc---------cCC-----CCCcCC--------CCceeEEEecCcEE
Q psy978 199 F-N----AH--HHADG--DNKPPTILMNGKGRFKE---------FRS-----NATVTY--------TPMEVFTVKQGHSY 247 (695)
Q Consensus 199 ~-~----~~--~~~~~--~~~~~~~lING~~~~~~---------~~~-----~~~~~~--------~~~~~~~v~~G~~~ 247 (695)
. . .. ..... ......+.|||...... +.. ...... .....+.++.|+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 0 0 00 00000 00113467888743210 000 000000 01245788899999
Q ss_pred EEEEEeCCCCCccEEEEEcCcceeEecCC-C----------CccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEe
Q psy978 248 RFRIINAGYLNCPIELSIANHTLTAINSD-G----------GDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMR 314 (695)
Q Consensus 248 rlRliNa~~~~~~~~~~i~gh~~~Via~D-G----------~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~ 314 (695)
.+-|-|.....| -||+|||.|.||+.- | ++..|...|++.+.+|.-+-|-++|++| |.+.|+.+
T Consensus 426 eiViqn~~~~~H--P~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP-G~Wl~HCH 500 (545)
T PLN02168 426 HIVFQNPLFSLE--SYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQ-GMWNVRSQ 500 (545)
T ss_pred EEEEeCCCCCCC--CeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccCC-eEEeeeec
Confidence 998888876554 499999999999761 1 3356899999999999999999999987 77667765
No 31
>PLN02354 copper ion binding / oxidoreductase
Probab=98.73 E-value=1.1e-06 Score=100.55 Aligned_cols=246 Identities=12% Similarity=0.075 Sum_probs=145.6
Q ss_pred EEEEEcCCCC------CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEE
Q psy978 65 AITVVNRQLP------GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYK 134 (695)
Q Consensus 65 ~~~~iNG~~P------GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~ 134 (695)
..++|||+-. -|+|.|++|.+.++|++|........+|..|..+... +.||++ .+.+-.|.|||++...
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVI-a~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLV-EMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEE-EeCCcccCCcceeEEEEccCceEEEE
Confidence 4689999842 3799999999999999999977889999999887554 689976 2344569999999999
Q ss_pred EEcCC-CeeeEEEccccCcCC-CCceeEEEEeCCCCC----CCCCCCCCC--CC---CceEEEEeeecccchh---hhh-
Q psy978 135 FNADS-PGTHFWHSHTGSQRG-DGSFGAFIIRKPRPR----EVHAPLYDF--DL---PEHIMLITDWSHVLGV---EMF- 199 (695)
Q Consensus 135 f~~~~-~GT~wYHsH~~~q~~-~Gl~G~lIV~~~~~~----~p~~~~~d~--d~---~e~~l~l~dw~~~~~~---~~~- 199 (695)
+++++ +|.||..+....... ....|.|...+.... .|.. ..+. .. ......+......... ...
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 347 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEA-PVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYG 347 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCC-CcccccchhhhhhhhhcccccccCCCCCCccccc
Confidence 99975 799999988532111 122333333222110 1100 0000 00 0000000000000000 000
Q ss_pred --hcc----cCCCC--CCCCCeeeeCCCCCCcc--------cC--CCCCc---------------CCCCceeEEEecCcE
Q psy978 200 --NAH----HHADG--DNKPPTILMNGKGRFKE--------FR--SNATV---------------TYTPMEVFTVKQGHS 246 (695)
Q Consensus 200 --~~~----~~~~~--~~~~~~~lING~~~~~~--------~~--~~~~~---------------~~~~~~~~~v~~G~~ 246 (695)
... ..... ......+.|||...... +. ..... .......+.++.|+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~ 427 (552)
T PLN02354 348 KINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTF 427 (552)
T ss_pred cccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCE
Confidence 000 00000 00112466777642200 00 00000 001123567888999
Q ss_pred EEEEEEeCCCCCccEEEEEcCcceeEecCCC-----------CccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEee
Q psy978 247 YRFRIINAGYLNCPIELSIANHTLTAINSDG-----------GDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRG 315 (695)
Q Consensus 247 ~rlRliNa~~~~~~~~~~i~gh~~~Via~DG-----------~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~ 315 (695)
+.+-|.|.....|+ ||+|||.|.|++.-- +...|...|++.+.++.-.-|-+++|+| |-+.|+.+-
T Consensus 428 VeiVi~n~~~~~HP--~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNP-GvW~~HCHi 504 (552)
T PLN02354 428 VEIIFENHEKSMQS--WHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNA-GMWNIRSEN 504 (552)
T ss_pred EEEEEeCCCCCCCC--CcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCC-eEEeeeccc
Confidence 99999998766554 999999999997642 2235889999999999999999999977 877677654
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.72 E-value=5.2e-07 Score=103.42 Aligned_cols=237 Identities=12% Similarity=0.077 Sum_probs=134.5
Q ss_pred CeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEEEEcCC-C-eeeEEEccc
Q psy978 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYKFNADS-P-GTHFWHSHT 149 (695)
Q Consensus 76 P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~f~~~~-~-GT~wYHsH~ 149 (695)
+.|.|++|+++++|++|........+++.|..+... ..||.+ .+..-.|.|||+++..+++++ + |.||.+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI-a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV-EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE-EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 358999999999999999877888888888876544 589865 233455899999999999976 3 589998764
Q ss_pred cCcCCC-CceeEEEEeCCCC-CC-CC-----CCCCCC-CCCc-eEE-EEeeecc----cchhhhhhcccCCCC-CCCCCe
Q psy978 150 GSQRGD-GSFGAFIIRKPRP-RE-VH-----APLYDF-DLPE-HIM-LITDWSH----VLGVEMFNAHHHADG-DNKPPT 213 (695)
Q Consensus 150 ~~q~~~-Gl~G~lIV~~~~~-~~-p~-----~~~~d~-d~~e-~~l-~l~dw~~----~~~~~~~~~~~~~~~-~~~~~~ 213 (695)
..+... ....+++.+.... .. |. ...++. ...+ ..+ .+..... ......... ..... ......
T Consensus 282 ~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 360 (541)
T TIGR03388 282 RGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVL-LNTQNKINGYTK 360 (541)
T ss_pred ccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEE-eccCcccCceEE
Confidence 333111 1112333333211 11 10 000110 0000 000 0000000 000000000 00000 011123
Q ss_pred eeeCCCCCCcc---------------cCC--C-----------CC----cCCCCceeEEEecCcEEEEEEEeCCCC----
Q psy978 214 ILMNGKGRFKE---------------FRS--N-----------AT----VTYTPMEVFTVKQGHSYRFRIINAGYL---- 257 (695)
Q Consensus 214 ~lING~~~~~~---------------~~~--~-----------~~----~~~~~~~~~~v~~G~~~rlRliNa~~~---- 257 (695)
|.+||...... +.. . +. .......++.++.|+++.|.|.|...+
T Consensus 361 ~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~ 440 (541)
T TIGR03388 361 WAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNN 440 (541)
T ss_pred EEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCC
Confidence 67777643200 000 0 00 000012357889999999999997421
Q ss_pred CccEEEEEcCcceeEecCC-CCc-----------cceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEee
Q psy978 258 NCPIELSIANHTLTAINSD-GGD-----------IKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRG 315 (695)
Q Consensus 258 ~~~~~~~i~gh~~~Via~D-G~~-----------v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~ 315 (695)
...+-||+|||.|.|++.. |.+ ..|...|++.+.++.-+-|-+.+++| |-+.++.+-
T Consensus 441 ~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNP-G~W~~HCHi 509 (541)
T TIGR03388 441 SETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNP-GVWAFHCHI 509 (541)
T ss_pred CCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCC-eEeeeeccc
Confidence 1135599999999999987 443 13788999999999999999999987 766666654
No 33
>PLN02991 oxidoreductase
Probab=98.71 E-value=1.7e-06 Score=98.33 Aligned_cols=247 Identities=9% Similarity=0.039 Sum_probs=144.3
Q ss_pred EEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEEEEcCC
Q psy978 64 RAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYKFNADS 139 (695)
Q Consensus 64 ~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~f~~~~ 139 (695)
-..++|||+...++|.|++|+++++|++|........+++.|+.+... ..||.+ -+.+-.|.|||++....++++
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVI-a~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLV-EVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEE-EeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 457899999766899999999999999999876678888888876544 589975 344566899999999999976
Q ss_pred -CeeeEEEcccc--CcCCCCceeEEEEeCCCCC--CCCCCC-CCCCCCceEEEEeeeccc-----ch-hh--h---hhcc
Q psy978 140 -PGTHFWHSHTG--SQRGDGSFGAFIIRKPRPR--EVHAPL-YDFDLPEHIMLITDWSHV-----LG-VE--M---FNAH 202 (695)
Q Consensus 140 -~GT~wYHsH~~--~q~~~Gl~G~lIV~~~~~~--~p~~~~-~d~d~~e~~l~l~dw~~~-----~~-~~--~---~~~~ 202 (695)
+|.||.-.-.. .+...+ .+.|-....... .|.... .+.+...-.....++... .. .. . +...
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~-~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILIT-TGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcce-EEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 68899776531 111121 233322222110 010000 000000000000000000 00 00 0 0000
Q ss_pred ----cCC-CC-CCCCCeeeeCCCCCCcc---------------cC-----CC--CCcCCCCceeEEEecCcEEEEEEEeC
Q psy978 203 ----HHA-DG-DNKPPTILMNGKGRFKE---------------FR-----SN--ATVTYTPMEVFTVKQGHSYRFRIINA 254 (695)
Q Consensus 203 ----~~~-~~-~~~~~~~lING~~~~~~---------------~~-----~~--~~~~~~~~~~~~v~~G~~~rlRliNa 254 (695)
... .+ ....-.+.|||...... |. .. ..........+.++.|+.+.+-|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 00 00112466777643210 00 00 00001122356778899999988887
Q ss_pred CCCCccEEEEEcCcceeEecCC-C----------CccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEee
Q psy978 255 GYLNCPIELSIANHTLTAINSD-G----------GDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRG 315 (695)
Q Consensus 255 ~~~~~~~~~~i~gh~~~Via~D-G----------~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~ 315 (695)
....| -||+|||.|.|++.. | ++..|...|++.+.++.-.-|-+.+|+| |-+.++.+-
T Consensus 428 ~~~~H--P~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNP-G~W~~HCHi 496 (543)
T PLN02991 428 EDIVQ--TWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNV-GMWNLRSEL 496 (543)
T ss_pred CCCCC--CeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCCC-EEeeeeeCc
Confidence 76555 499999999999753 1 2245889999999999999999999987 877777764
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.70 E-value=1.1e-06 Score=100.47 Aligned_cols=246 Identities=15% Similarity=0.112 Sum_probs=140.9
Q ss_pred EEEEEcCCC---------------CCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCc-cCCCCCCCCCC----CccccC
Q psy978 65 AITVVNRQL---------------PGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHH-QVDSPYMDGVP----HLTQCP 124 (695)
Q Consensus 65 ~~~~iNG~~---------------PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~-~~~~~~~DG~p----~vtqcp 124 (695)
..++|||+. ..|+|+|++|+++++|++|........+++.|.. +... ..||.+ .+.+-.
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VI-a~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTII-EADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEE-EeCCCCCCceEeCeEE
Confidence 468899983 1378999999999999999987667888888876 5433 589974 123345
Q ss_pred CCCCCeEEEEEEcCCC--------eeeEEEcccc--CcCCCCceeEEEEeCCCCC-CC---CCCCCCC-----CCCceEE
Q psy978 125 VPPRSTFRYKFNADSP--------GTHFWHSHTG--SQRGDGSFGAFIIRKPRPR-EV---HAPLYDF-----DLPEHIM 185 (695)
Q Consensus 125 I~PG~~~tY~f~~~~~--------GT~wYHsH~~--~q~~~Gl~G~lIV~~~~~~-~p---~~~~~d~-----d~~e~~l 185 (695)
|.|||+++..+++++. |-||...-.. .+... ..|.|...+.... .| .....+. +..+..|
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~-~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYR-GYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcce-EEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 8999999999999763 8899876532 12212 2333333222111 11 1000000 0001111
Q ss_pred EEeeeccc--------c-hhhhhhcccC-CCC-CCCCCeeeeCCCCCCcc-cCC--------CC-C-c-----------C
Q psy978 186 LITDWSHV--------L-GVEMFNAHHH-ADG-DNKPPTILMNGKGRFKE-FRS--------NA-T-V-----------T 232 (695)
Q Consensus 186 ~l~dw~~~--------~-~~~~~~~~~~-~~~-~~~~~~~lING~~~~~~-~~~--------~~-~-~-----------~ 232 (695)
. .+... . ....+..... ... ......|+|||...... ... .. . . .
T Consensus 330 ~--pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~ 407 (538)
T TIGR03390 330 E--PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGF 407 (538)
T ss_pred E--ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCc
Confidence 1 11000 0 0000000000 000 01124578888743210 000 00 0 0 0
Q ss_pred CCCceeEEEecCcEEEEEEEeCCC------CCccEEEEEcCcceeEecC-CCCc-----------cceeEEeEEEEc---
Q psy978 233 YTPMEVFTVKQGHSYRFRIINAGY------LNCPIELSIANHTLTAINS-DGGD-----------IKPISVGSIVSY--- 291 (695)
Q Consensus 233 ~~~~~~~~v~~G~~~rlRliNa~~------~~~~~~~~i~gh~~~Via~-DG~~-----------v~p~~~d~l~l~--- 291 (695)
......+.++.|++++|.|.|... ....+-||+|||+|.||+. +|.+ ..|...|++.+.
T Consensus 408 ~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~ 487 (538)
T TIGR03390 408 DPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYA 487 (538)
T ss_pred CcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccc
Confidence 001135778899999999999741 0114569999999999995 4543 248899999984
Q ss_pred -------CCceEEEEEEcCCCCcceEEEEee
Q psy978 292 -------AGERWDFILNATHHVGNYWIKMRG 315 (695)
Q Consensus 292 -------pGeR~dVlv~a~~~~g~Y~Ir~~~ 315 (695)
++.-+.|-+.++++ |.+.|+.+-
T Consensus 488 ~~~~~~~~~~~~~ir~~~dNP-G~W~~HCHi 517 (538)
T TIGR03390 488 VKVVPGAPAGWRAWRIRVTNP-GVWMMHCHI 517 (538)
T ss_pred ccccccCCCceEEEEEEcCCC-eeEEEeccc
Confidence 67778888888876 877777654
No 35
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.70 E-value=1.2e-08 Score=95.50 Aligned_cols=91 Identities=26% Similarity=0.393 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC--------------CccccCCCCCCeEEEEEEcCC
Q psy978 74 PGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP--------------HLTQCPVPPRSTFRYKFNADS 139 (695)
Q Consensus 74 PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p--------------~vtqcpI~PG~~~tY~f~~~~ 139 (695)
..+.+.++.|+.+++.+.|.. ...+.+|+||.........++.. ...-..|+||+..+.+|.++.
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~-~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~ 110 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNG-SMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN 110 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECT-TSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS
T ss_pred CcceEEEeCCCEEEEEEECCC-CCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec
Confidence 357899999999999999986 57999999998864321111111 111235889999999999999
Q ss_pred CeeeEEEccccCcCCCCceeEEEEeC
Q psy978 140 PGTHFWHSHTGSQRGDGSFGAFIIRK 165 (695)
Q Consensus 140 ~GT~wYHsH~~~q~~~Gl~G~lIV~~ 165 (695)
+|.|.||||...+...||.+.+.|.+
T Consensus 111 ~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 111 PGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp TEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred ceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999975
No 36
>PLN02604 oxidoreductase
Probab=98.67 E-value=5.2e-08 Score=112.04 Aligned_cols=90 Identities=18% Similarity=0.248 Sum_probs=70.2
Q ss_pred eeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCCE
Q psy978 475 VVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGGF 554 (695)
Q Consensus 475 ~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G~ 554 (695)
+++++.|+.|++.|.|... ...|+||+||... . +.++ ..| .+......|+||+.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~--~~~~~iH~HG~~~--~-----~~~~---------~DG--------~~~~tq~~i~pg~s 109 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLL--TENVAIHWHGIRQ--I-----GTPW---------FDG--------TEGVTQCPILPGET 109 (566)
T ss_pred cEEEECCCEEEEEEEeCCC--CCCCCEEeCCCCC--C-----CCcc---------ccC--------CCccccCccCCCCe
Confidence 5889999999999999841 3579999999942 1 1000 001 11223457899999
Q ss_pred EEEEEEecCceeeEEeecchhhhhcCceEEEEeccC
Q psy978 555 TIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEH 590 (695)
Q Consensus 555 ~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~ 590 (695)
...+|+++++|.|+||||...|...||+..|.|...
T Consensus 110 ~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~ 145 (566)
T PLN02604 110 FTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLP 145 (566)
T ss_pred EEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEec
Confidence 999999999999999999999999999999999653
No 37
>PLN02792 oxidoreductase
Probab=98.64 E-value=8.3e-06 Score=92.91 Aligned_cols=246 Identities=10% Similarity=0.042 Sum_probs=144.9
Q ss_pred EEEEEEcCCC--CCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEEEEc
Q psy978 64 RAITVVNRQL--PGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYKFNA 137 (695)
Q Consensus 64 ~~~~~iNG~~--PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~f~~ 137 (695)
-..++|||+- ..++|.|++|+++++|++|........+++.|+.+... ..||.+ -+++-.|.|||+++..+++
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI-~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLI-EVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEE-EeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 3578999984 24789999999999999999877788999988876544 589964 3344569999999999999
Q ss_pred CC-CeeeEEEccccCcCCCCcee-EEEEeCCCCCC-C---CCCCC-CCCCCceEEEEeeecccc-----hh---h-h--h
Q psy978 138 DS-PGTHFWHSHTGSQRGDGSFG-AFIIRKPRPRE-V---HAPLY-DFDLPEHIMLITDWSHVL-----GV---E-M--F 199 (695)
Q Consensus 138 ~~-~GT~wYHsH~~~q~~~Gl~G-~lIV~~~~~~~-p---~~~~~-d~d~~e~~l~l~dw~~~~-----~~---~-~--~ 199 (695)
++ +|.||........ ...+.+ +++-+...... + ....+ +.+.........++.... .. . . +
T Consensus 258 ~~~~g~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 258 DQPPQNYSIVVSTRFI-AAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred CCCCceEEEEEEeccC-CCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 76 6899998774311 111222 33333321111 1 00000 000000000000110000 00 0 0 0
Q ss_pred h--cc--cCCCCC--CCCCeeeeCCCCCCcc--------c-C-----CCCCcCC---------CCceeEEEecCcEEEEE
Q psy978 200 N--AH--HHADGD--NKPPTILMNGKGRFKE--------F-R-----SNATVTY---------TPMEVFTVKQGHSYRFR 250 (695)
Q Consensus 200 ~--~~--~~~~~~--~~~~~~lING~~~~~~--------~-~-----~~~~~~~---------~~~~~~~v~~G~~~rlR 250 (695)
. .. ...... ...-.+.|||...... + . ....... ....++.++.|+.+.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0 00 000000 0112456777642210 0 0 0000000 01245678899999999
Q ss_pred EEeCCCCCccEEEEEcCcceeEecCC-C----------CccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEe
Q psy978 251 IINAGYLNCPIELSIANHTLTAINSD-G----------GDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMR 314 (695)
Q Consensus 251 liNa~~~~~~~~~~i~gh~~~Via~D-G----------~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~ 314 (695)
|-|.....| -||+|||.|.||+.. | +++.|...|++.+.++.-.-|-+.+|++ |-+.++.+
T Consensus 417 iqn~~~~~H--P~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNP-GvW~~HCh 488 (536)
T PLN02792 417 FQNREKIVQ--SYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNV-GMWNLRSQ 488 (536)
T ss_pred EECCCCCCC--CeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCC-EEEeeeEc
Confidence 999766554 499999999999742 1 2346889999999999999999999987 87777764
No 38
>PLN02191 L-ascorbate oxidase
Probab=98.42 E-value=1.2e-05 Score=92.64 Aligned_cols=244 Identities=9% Similarity=0.026 Sum_probs=137.8
Q ss_pred EEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCC----ccccCCCCCCeEEEEEEcCC-C-
Q psy978 67 TVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH----LTQCPVPPRSTFRYKFNADS-P- 140 (695)
Q Consensus 67 ~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~----vtqcpI~PG~~~tY~f~~~~-~- 140 (695)
+++||+.-.++|.|++|++.++|++|........+++.|+.+... ..||.+- +.+-.|.|||+++.-+++++ +
T Consensus 217 ~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVI-a~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~ 295 (574)
T PLN02191 217 FKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVV-EADGNYITPFTTDDIDIYSGESYSVLLTTDQDPS 295 (574)
T ss_pred eccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEE-EcCCeeccceEeeeEEEcCCCeEEEEEECCCCCC
Confidence 456665433479999999999999999877788888888776544 5899762 34456899999999999976 4
Q ss_pred eeeEEEccccCcC---CCCceeEEEEeCCCCCC-CCC-----CCCCC-CC---CceEEEEeeecccch-----hhhhhcc
Q psy978 141 GTHFWHSHTGSQR---GDGSFGAFIIRKPRPRE-VHA-----PLYDF-DL---PEHIMLITDWSHVLG-----VEMFNAH 202 (695)
Q Consensus 141 GT~wYHsH~~~q~---~~Gl~G~lIV~~~~~~~-p~~-----~~~d~-d~---~e~~l~l~dw~~~~~-----~~~~~~~ 202 (695)
+.||-+.-...+. ..++ +.|-........ |.. ..++. .. .+..+ +........ ...+...
T Consensus 296 ~~y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~ 373 (574)
T PLN02191 296 QNYYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKI-FSAMGSPSPPKKYRKRLILLN 373 (574)
T ss_pred CCEEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccc-cccccCCCCCCcccceEEEec
Confidence 5899987543222 1232 333222222111 110 00110 00 00000 000000000 0000000
Q ss_pred cCCCCCCCCCeeeeCCCCCCcc-cC------C--C-------------------CC----cCCCCceeEEEecCcEEEEE
Q psy978 203 HHADGDNKPPTILMNGKGRFKE-FR------S--N-------------------AT----VTYTPMEVFTVKQGHSYRFR 250 (695)
Q Consensus 203 ~~~~~~~~~~~~lING~~~~~~-~~------~--~-------------------~~----~~~~~~~~~~v~~G~~~rlR 250 (695)
.... ......+.|||...... .. . . +. ........+.++.|+.+.+=
T Consensus 374 ~~~~-~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdiv 452 (574)
T PLN02191 374 TQNL-IDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVI 452 (574)
T ss_pred ccce-eCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEE
Confidence 0000 00112466777632100 00 0 0 00 00011235677889999999
Q ss_pred EEeCCC----CCccEEEEEcCcceeEecCCC-C-----------ccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEe
Q psy978 251 IINAGY----LNCPIELSIANHTLTAINSDG-G-----------DIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMR 314 (695)
Q Consensus 251 liNa~~----~~~~~~~~i~gh~~~Via~DG-~-----------~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~ 314 (695)
|.|... ..-.+-||+|||+|.||+... . +..|...|++.+.++.-+-|-+++++| |-+.++.+
T Consensus 453 i~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNP-G~Wl~HCH 531 (574)
T PLN02191 453 IQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNP-GVWFFHCH 531 (574)
T ss_pred EECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCC-EEEEEecC
Confidence 998751 111345999999999997653 2 235788999999999999999999977 77667765
Q ss_pred e
Q psy978 315 G 315 (695)
Q Consensus 315 ~ 315 (695)
-
T Consensus 532 i 532 (574)
T PLN02191 532 I 532 (574)
T ss_pred c
Confidence 4
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.40 E-value=1.1e-06 Score=79.91 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=67.3
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
+++.++.|+.|++.|.|.. ..++.+|+||...- .. .+. .|... . -.-.|+||+
T Consensus 26 PtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~~-------~~--~~~-------DG~~~-~-------~~~~i~pG~ 78 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQP-------PS--PWM-------DGVPG-V-------TQCPIAPGE 78 (117)
T ss_dssp EEEEEETTEEEEEEEEEES---SSGBSEEEETSBST-------TG--GGG-------SGGTT-T-------SGSSBSTTE
T ss_pred CEEEEEcCCeeEEEEEecc---ccccccccceeeee-------ee--eec-------CCccc-c-------cceeEEeec
Confidence 4799999999999999986 56899999996521 10 000 01000 0 012378899
Q ss_pred EEEEEEEecC-ceeeEEeecchhhhhcCceEEEEeccC
Q psy978 554 FTIIRFHATN-PGYWLFHCHIEFHVETGMALVFKVGEH 590 (695)
Q Consensus 554 ~~vIRF~AdN-PG~Wl~HCHi~~H~~~GM~~v~~V~~~ 590 (695)
....+|+++. +|.|+||||...|...||...|.|.++
T Consensus 79 ~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 79 SFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9999999988 999999999999988999999998753
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.27 E-value=5.2e-05 Score=87.09 Aligned_cols=234 Identities=9% Similarity=0.076 Sum_probs=134.5
Q ss_pred CeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCCCCCeEEEEEEcCCC-e-eeEEEccc
Q psy978 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVPPRSTFRYKFNADSP-G-THFWHSHT 149 (695)
Q Consensus 76 P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~PG~~~tY~f~~~~~-G-T~wYHsH~ 149 (695)
|+|.|++|++.++|++|........++.-|+.+... ..||.+ -+++-.|.|||+++.-.+++++ | .||.-.-.
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVI-a~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLV-EAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEE-EeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 589999999999999999877788888888776544 579864 2344569999999999999874 5 89986542
Q ss_pred c------CcCCCCceeEEEEeCCCC--CC--CCCC--CCCCCCCc-eEEEEe-----eecccch--hhhh---h-c-cc-
Q psy978 150 G------SQRGDGSFGAFIIRKPRP--RE--VHAP--LYDFDLPE-HIMLIT-----DWSHVLG--VEMF---N-A-HH- 203 (695)
Q Consensus 150 ~------~q~~~Gl~G~lIV~~~~~--~~--p~~~--~~d~d~~e-~~l~l~-----dw~~~~~--~~~~---~-~-~~- 203 (695)
. .+...|. +.|-...... .. |... ..|..... ....+. ....... .... . . ..
T Consensus 296 ~~~~~~~~~~~~~~-AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 374 (596)
T PLN00044 296 RFVDAAVVDKLTGV-AILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYL 374 (596)
T ss_pred ccccCccccCccee-EEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeee
Confidence 1 1333332 2332222111 01 1101 11110000 000000 0000000 0000 0 0 00
Q ss_pred -CCC-CCC--CCCeeeeCCCCCCcc--------c-CCCC----CcC--------CCCceeEEEecCcEEEEEEEeCCCCC
Q psy978 204 -HAD-GDN--KPPTILMNGKGRFKE--------F-RSNA----TVT--------YTPMEVFTVKQGHSYRFRIINAGYLN 258 (695)
Q Consensus 204 -~~~-~~~--~~~~~lING~~~~~~--------~-~~~~----~~~--------~~~~~~~~v~~G~~~rlRliNa~~~~ 258 (695)
... +.. ..-.+.|||...... + .... +.. .....+..++.|+++.+-|-|.....
T Consensus 375 ~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~ 454 (596)
T PLN00044 375 LQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNV 454 (596)
T ss_pred eccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCCC
Confidence 000 000 012456777642210 0 0000 000 01234567888999999999976544
Q ss_pred ccEEEEEcCcceeEecCCC-----------CccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEe
Q psy978 259 CPIELSIANHTLTAINSDG-----------GDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMR 314 (695)
Q Consensus 259 ~~~~~~i~gh~~~Via~DG-----------~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~ 314 (695)
| .||+|||.|.||+... +++.|...|++.+.+|.-.-|-+.+|++ |-+.|+.+
T Consensus 455 H--P~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNP-G~W~lHCH 518 (596)
T PLN00044 455 Q--SYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNA-GIWNLRVE 518 (596)
T ss_pred C--CeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecCCC-EEehhhcc
Confidence 4 5999999999997653 3446889999999999999999999987 87777765
No 41
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.08 E-value=1.9e-05 Score=69.63 Aligned_cols=82 Identities=17% Similarity=0.320 Sum_probs=56.0
Q ss_pred CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCc--cccCCCCCCeEEEEEEcCCCeeeEEEccccCc
Q psy978 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL--TQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQ 152 (695)
Q Consensus 75 GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~v--tqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q 152 (695)
...|+|++||+| +++|.. ..++++.++....... ..+..+.. +.--+.||+++++.|.. +|+|.|||- .+
T Consensus 16 P~~i~v~~G~~V--~~~N~~-~~~H~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~y~C~--~H 87 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNK-GGPHNVVFDEDAVPAG-VKELAKSLSHKDLLNSPGESYEVTFST--PGTYTFYCE--PH 87 (99)
T ss_pred CCEEEECCCCEE--EEEECC-CCCceEEECCCCCccc-hhhhcccccccccccCCCCEEEEEeCC--CEEEEEEcC--Cc
Confidence 478999999986 455764 4667777764321110 00000111 12246899999998875 999999998 78
Q ss_pred CCCCceeEEEEe
Q psy978 153 RGDGSFGAFIIR 164 (695)
Q Consensus 153 ~~~Gl~G~lIV~ 164 (695)
...||.|.|+|+
T Consensus 88 ~~aGM~G~I~V~ 99 (99)
T TIGR02656 88 RGAGMVGKITVE 99 (99)
T ss_pred cccCCEEEEEEC
Confidence 888999999984
No 42
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.89 E-value=2e-05 Score=75.84 Aligned_cols=85 Identities=21% Similarity=0.297 Sum_probs=67.9
Q ss_pred eEEEEEEcCC------------CCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCC----CccccCCC
Q psy978 63 KRAITVVNRQ------------LPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVP----HLTQCPVP 126 (695)
Q Consensus 63 ~~~~~~iNG~------------~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p----~vtqcpI~ 126 (695)
.-..++|||+ -.-|+|.+++|+++++||+|........+++.|+.+... ..||.+ -++.-.|.
T Consensus 35 ~~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~Vi-a~DG~~v~p~~~~~l~l~ 113 (159)
T PF00394_consen 35 IPDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTVI-AADGVPVEPYKVDTLVLA 113 (159)
T ss_dssp SCSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEEE-EETTEEEEEEEESBEEE-
T ss_pred CCcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeEe-eeccccccccccceEEee
Confidence 3457889993 224899999999999999999876778999999876554 579977 23445689
Q ss_pred CCCeEEEEEEcCC-CeeeEEEcc
Q psy978 127 PRSTFRYKFNADS-PGTHFWHSH 148 (695)
Q Consensus 127 PG~~~tY~f~~~~-~GT~wYHsH 148 (695)
||++++..+++++ +|.||.++.
T Consensus 114 ~G~R~dvlv~~~~~~g~y~i~~~ 136 (159)
T PF00394_consen 114 PGQRYDVLVTADQPPGNYWIRAS 136 (159)
T ss_dssp TTEEEEEEEEECSCSSEEEEEEE
T ss_pred CCeEEEEEEEeCCCCCeEEEEEe
Confidence 9999999999987 999999994
No 43
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.86 E-value=4.9e-05 Score=67.01 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=54.1
Q ss_pred CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCcc-CCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcC
Q psy978 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQ-VDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQR 153 (695)
Q Consensus 75 GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~-~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~ 153 (695)
-+.|+|++||+|+ +.|.. ..++++.+=--.. .+.......+.-..-.+.||+++++.|+ .+|+|.|+|- - |.
T Consensus 16 P~~i~V~~G~tV~--~~n~~-~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~ 88 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNND-SMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--KPGTYEYYCT-P-HY 88 (99)
T ss_dssp SSEEEEETTEEEE--EEEES-SSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--SSEEEEEEET-T-TG
T ss_pred CCEEEECCCCEEE--EEECC-CCCceEEEecccccccccccccCccccceecCCCCEEEEEeC--CCeEEEEEcC-C-Cc
Confidence 3799999999865 55542 3567776632110 0000000001001123789999999998 9999999999 4 88
Q ss_pred CCCceeEEEEe
Q psy978 154 GDGSFGAFIIR 164 (695)
Q Consensus 154 ~~Gl~G~lIV~ 164 (695)
..||.|.|+|.
T Consensus 89 ~~GM~G~i~V~ 99 (99)
T PF00127_consen 89 EAGMVGTIIVE 99 (99)
T ss_dssp GTTSEEEEEEE
T ss_pred ccCCEEEEEEC
Confidence 88999999985
No 44
>KOG1263|consensus
Probab=97.70 E-value=0.0031 Score=71.99 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=135.9
Q ss_pred EEEEEEcCCCC-C----CeEEEEeCCEEEEEEeeCCCCCCceEeeCCC--ccCCCCCCCCC---CCc-cccCCCCCCeEE
Q psy978 64 RAITVVNRQLP-G----PAVDVCVGDHVIVNLHNGLMEESTSIHWHGH--HQVDSPYMDGV---PHL-TQCPVPPRSTFR 132 (695)
Q Consensus 64 ~~~~~iNG~~P-G----P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl--~~~~~~~~DG~---p~v-tqcpI~PG~~~t 132 (695)
-...+|||+-+ . +++.|++|++.++|+.|.. ..++++|... .+... ..||. |.. +---|.|||+++
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g--~~~~l~F~I~~H~ltvV-e~Dg~y~~p~~~~~l~i~~GQ~~~ 268 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAG--LNTSLNFSIANHQLTVV-EVDGAYTKPFTTDSLDIHPGQTYS 268 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccc--cccceEEEECCeEEEEE-EecceEEeeeeeceEEEcCCcEEE
Confidence 45789999852 1 6899999999999999996 4455555443 33222 46773 221 223489999999
Q ss_pred EEEEcCC-CeeeEEEccccCcCC---CCceeEEEEeCCCCCCCCCC----------CCCCC-------------------
Q psy978 133 YKFNADS-PGTHFWHSHTGSQRG---DGSFGAFIIRKPRPREVHAP----------LYDFD------------------- 179 (695)
Q Consensus 133 Y~f~~~~-~GT~wYHsH~~~q~~---~Gl~G~lIV~~~~~~~p~~~----------~~d~d------------------- 179 (695)
+-.+++| ++.||+=.....+.. .=+.+..+++-..+.-+... .++..
T Consensus 269 vLvtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~ 348 (563)
T KOG1263|consen 269 VLLTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFAR 348 (563)
T ss_pred EEEeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcc
Confidence 9999976 679999887654421 01222222221111000000 00000
Q ss_pred -----C-CceEEEEeeeccc-chh----hhhhcccCCCCCCCCC--------eeeeCCCCCCcccCCCC----Cc--CCC
Q psy978 180 -----L-PEHIMLITDWSHV-LGV----EMFNAHHHADGDNKPP--------TILMNGKGRFKEFRSNA----TV--TYT 234 (695)
Q Consensus 180 -----~-~e~~l~l~dw~~~-~~~----~~~~~~~~~~~~~~~~--------~~lING~~~~~~~~~~~----~~--~~~ 234 (695)
. .+..+.++.-... ... .......+...-..|. ...+.|... +.+.+.. +. +..
T Consensus 349 ~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~-~d~p~~P~~~~~~~~~~~ 427 (563)
T KOG1263|consen 349 PVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFT-NDFPDKPPIKFDYTGPTL 427 (563)
T ss_pred cCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCcccc-CccCCCCccccCCccccc
Confidence 0 0111111110000 000 0000000000000111 122232211 1111111 00 123
Q ss_pred CceeEEEecCcEEEEEEEeCCCCCcc-EEEEEcCcceeEecCC-CCc------------cceeEEeEEEEcCCceEEEEE
Q psy978 235 PMEVFTVKQGHSYRFRIINAGYLNCP-IELSIANHTLTAINSD-GGD------------IKPISVGSIVSYAGERWDFIL 300 (695)
Q Consensus 235 ~~~~~~v~~G~~~rlRliNa~~~~~~-~~~~i~gh~~~Via~D-G~~------------v~p~~~d~l~l~pGeR~dVlv 300 (695)
....+.++-+..+.+=+-|.+...+. +.+|+|||.|.||+.+ |++ ..|...++|.|.||.-.-|.+
T Consensus 428 ~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf 507 (563)
T KOG1263|consen 428 GTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRF 507 (563)
T ss_pred cceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEE
Confidence 33578899999999999999865422 2359999999999994 322 246788999999999999999
Q ss_pred EcCCCCcceEEEEee
Q psy978 301 NATHHVGNYWIKMRG 315 (695)
Q Consensus 301 ~a~~~~g~Y~Ir~~~ 315 (695)
.|+++ |-+.|+.+-
T Consensus 508 ~adNP-G~W~~HCHi 521 (563)
T KOG1263|consen 508 VADNP-GVWLMHCHI 521 (563)
T ss_pred EcCCC-cEEEEEEec
Confidence 99987 877788754
No 45
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.68 E-value=0.00022 Score=81.04 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=67.6
Q ss_pred eCCCCceE--EEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEE
Q psy978 57 IPADGVKR--AITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYK 134 (695)
Q Consensus 57 ~~~dG~~~--~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~ 134 (695)
+-.||.+. .+..+.-.|--+.|+|++||.|.++|+|.-..+-.. ||...... |+-. -|.||++-+..
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi---HGF~Ip~~----nI~~----dv~PG~t~svt 602 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT---HGFAIPNY----GVNM----EVAPQATASVT 602 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc---cceeeccc----CccE----EEcCCceEEEE
Confidence 34566433 455566677667899999999999999953211111 56554331 1111 27799999999
Q ss_pred EEcCCCeeeEEEccc--c-CcCCCCceeEEEEeC
Q psy978 135 FNADSPGTHFWHSHT--G-SQRGDGSFGAFIIRK 165 (695)
Q Consensus 135 f~~~~~GT~wYHsH~--~-~q~~~Gl~G~lIV~~ 165 (695)
|+++++|+|||||.. + .|. +|.|.|+|.+
T Consensus 603 F~adkPGvy~~~CtefCGa~H~--~M~G~~iVep 634 (635)
T PRK02888 603 FTADKPGVYWYYCTWFCHALHM--EMRGRMLVEP 634 (635)
T ss_pred EEcCCCEEEEEECCcccccCcc--cceEEEEEEe
Confidence 999999999999985 2 443 8999999975
No 46
>PRK02710 plastocyanin; Provisional
Probab=97.67 E-value=0.00026 Score=64.63 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=55.3
Q ss_pred CCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCc
Q psy978 73 LPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQ 152 (695)
Q Consensus 73 ~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q 152 (695)
|--+.|+|++||+| +++|.. ..++++.+.|.. +.. .+.-.+.||++++|.|.. +|+|-|+|- .+
T Consensus 44 F~P~~i~v~~Gd~V--~~~N~~-~~~H~v~~~~~~--------~~~-~~~~~~~pg~t~~~tF~~--~G~y~y~C~--~H 107 (119)
T PRK02710 44 FEPSTLTIKAGDTV--KWVNNK-LAPHNAVFDGAK--------ELS-HKDLAFAPGESWEETFSE--AGTYTYYCE--PH 107 (119)
T ss_pred EeCCEEEEcCCCEE--EEEECC-CCCceEEecCCc--------ccc-ccccccCCCCEEEEEecC--CEEEEEEcC--CC
Confidence 33488999999985 556764 467888765431 110 111137899999999886 999999997 66
Q ss_pred CCCCceeEEEEe
Q psy978 153 RGDGSFGAFIIR 164 (695)
Q Consensus 153 ~~~Gl~G~lIV~ 164 (695)
...||.|.|+|+
T Consensus 108 ~~~gM~G~I~V~ 119 (119)
T PRK02710 108 RGAGMVGKITVE 119 (119)
T ss_pred ccCCcEEEEEEC
Confidence 778999999984
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.66 E-value=0.00026 Score=67.00 Aligned_cols=91 Identities=22% Similarity=0.349 Sum_probs=58.8
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC--
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD-- 551 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~-- 551 (695)
+.+.++.|+.|++.+.|.+. +..|.|-||.+.-. +... ... .| .|..-..-.+|+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~----------~~~~--p~m--dG-------~~~~~~~~i~p~~~ 108 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPP----------YPYM--PGM--DG-------LGFVAGTGFLPPPK 108 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCc----------cccc--ccc--CC-------CCccccCcccCCCC
Confidence 46899999999999999862 34566666643211 0000 000 00 011111122232
Q ss_pred CC---EEEEEEEecCceeeEEeecchhhhhcCceEEEEe
Q psy978 552 GG---FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587 (695)
Q Consensus 552 ~G---~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V 587 (695)
.| |.-++|+++.+|.+.||||+..|...||...|.|
T Consensus 109 ~g~~~~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 109 SGKFGYTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred CCccceeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 22 5688999999999999999999999999998887
No 48
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.63 E-value=6.8e-05 Score=66.71 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=48.0
Q ss_pred eEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCee
Q psy978 63 KRAITVVNRQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGT 142 (695)
Q Consensus 63 ~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT 142 (695)
.-.+..-|++|=...|+|++|++|+|+++|.. ...+.+...++... -.|.||++.++.|...++|+
T Consensus 22 ~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~-~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~~~~G~ 87 (104)
T PF13473_consen 22 TVTITVTDFGFSPSTITVKAGQPVTLTFTNND-SRPHEFVIPDLGIS-------------KVLPPGETATVTFTPLKPGE 87 (104)
T ss_dssp --------EEEES-EEEEETTCEEEEEEEE-S-SS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE-S-EE
T ss_pred cccccccCCeEecCEEEEcCCCeEEEEEEECC-CCcEEEEECCCceE-------------EEECCCCEEEEEEcCCCCEE
Confidence 33444456777557999999999999999996 45566665553221 14899999999999999999
Q ss_pred eEEEccccCcCCCCceeEEEE
Q psy978 143 HFWHSHTGSQRGDGSFGAFII 163 (695)
Q Consensus 143 ~wYHsH~~~q~~~Gl~G~lIV 163 (695)
|=|+|-.+. . |.|-|||
T Consensus 88 y~~~C~~~~---~-m~G~liV 104 (104)
T PF13473_consen 88 YEFYCTMHP---N-MKGTLIV 104 (104)
T ss_dssp EEEB-SSS----T-TB-----
T ss_pred EEEEcCCCC---c-ceecccC
Confidence 999999665 2 6777776
No 49
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.50 E-value=0.00071 Score=57.55 Aligned_cols=74 Identities=18% Similarity=0.233 Sum_probs=50.0
Q ss_pred CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCC
Q psy978 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRG 154 (695)
Q Consensus 75 GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~ 154 (695)
.+.|+|++||+|. +.|.. ..++++++....-....+.. -.+.||+++++.| +++|+|-|||-..-
T Consensus 10 P~~i~v~~GdtVt--~~N~d-~~~Hnv~~~~g~~~~~~~~~-------~~~~~g~~~~~tf--~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINRE-AMPHNVHFVAGVLGEAALKG-------PMMKKEQAYSLTF--TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECC-CCCccEEecCCCCccccccc-------cccCCCCEEEEEC--CCCEEEEEEcCCCC---
Confidence 4789999999965 57875 36788887543211110111 1256788777665 68999999997643
Q ss_pred CCceeEEEEe
Q psy978 155 DGSFGAFIIR 164 (695)
Q Consensus 155 ~Gl~G~lIV~ 164 (695)
+|.|.++|+
T Consensus 75 -~M~G~v~V~ 83 (83)
T TIGR02657 75 -FMRGKVVVE 83 (83)
T ss_pred -CCeEEEEEC
Confidence 489999985
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.36 E-value=0.0018 Score=61.73 Aligned_cols=96 Identities=14% Similarity=0.075 Sum_probs=71.1
Q ss_pred EEEcCCCCC-CeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCC-------CCCCC----Cccc-----cCCCCCC
Q psy978 67 TVVNRQLPG-PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPY-------MDGVP----HLTQ-----CPVPPRS 129 (695)
Q Consensus 67 ~~iNG~~PG-P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~-------~DG~p----~vtq-----cpI~PG~ 129 (695)
+-+||+..| |+|.+-.|-+|.|+++|.- ..++++-. -+.++++ .||.. +.++ -.|.+|+
T Consensus 75 fNfnGts~G~mtIyiPaGw~V~V~f~N~e-~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 75 FNFNGTSYGAMTIYLPAGWNVYVTFTNYE-SLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ccccCccCCceEEEEeCCCEEEEEEEcCC-CCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 557777666 7999999999999999996 56655554 3333322 45533 2221 2356788
Q ss_pred eEEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeCC
Q psy978 130 TFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKP 166 (695)
Q Consensus 130 ~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~ 166 (695)
+..=.|..-++|+|||=|-.-.|-.+||+|-+||.+.
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 8666666679999999999999999999999999763
No 51
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.23 E-value=0.0023 Score=57.94 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=51.2
Q ss_pred CCeEEEEeCCEEEEEEeeCCCCCCceEee-CCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcC
Q psy978 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHW-HGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQR 153 (695)
Q Consensus 75 GP~I~v~~GD~v~V~v~N~l~~~~~siH~-HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~ 153 (695)
...|.|++||+|+....|. ++++.+ .+. .-+|...+ .-.+|+++++.| +++|+|=|+|- .|.
T Consensus 14 P~~v~V~~GdTV~f~n~d~----~Hnv~~~~~~------~p~g~~~~---~s~~g~~~~~tF--~~~G~Y~Y~C~--pH~ 76 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK----GHNVETIKGM------IPEGAEAF---KSKINEEYTVTV--TEEGVYGVKCT--PHY 76 (116)
T ss_pred CCEEEECCCCEEEEEECCC----CeeEEEccCC------CcCCcccc---cCCCCCEEEEEe--CCCEEEEEEcC--CCc
Confidence 4789999999976666554 355554 221 11222221 123566666666 68999999998 777
Q ss_pred CCCceeEEEEeCCC
Q psy978 154 GDGSFGAFIIRKPR 167 (695)
Q Consensus 154 ~~Gl~G~lIV~~~~ 167 (695)
..||.|.++|.++.
T Consensus 77 ~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 77 GMGMVALIQVGDPP 90 (116)
T ss_pred cCCCEEEEEECCCC
Confidence 88999999998753
No 52
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.08 E-value=0.005 Score=60.08 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=72.4
Q ss_pred EEEEEcCCCCC-CeEEEEeCCEEEEEEeeCCCCCCceEee--CCCccCC--CCCCCCCC----C-----ccccCCCCCCe
Q psy978 65 AITVVNRQLPG-PAVDVCVGDHVIVNLHNGLMEESTSIHW--HGHHQVD--SPYMDGVP----H-----LTQCPVPPRST 130 (695)
Q Consensus 65 ~~~~iNG~~PG-P~I~v~~GD~v~V~v~N~l~~~~~siH~--HGl~~~~--~~~~DG~p----~-----vtqcpI~PG~~ 130 (695)
..+-+||..=| ++|.|-.|-+|.|+++|.. ..++++-. -+-.+.. .-..||.. + .+--.|.+|++
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~-~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQE-SLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCC-CCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 47778887655 7999999999999999985 34444332 1111111 11345522 0 11225889999
Q ss_pred EEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeCC
Q psy978 131 FRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRKP 166 (695)
Q Consensus 131 ~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~~ 166 (695)
..-.|..-++|+||+=|-...|.+.||++-|||.+.
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 987787788999999999999999999999999864
No 53
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.00 E-value=0.006 Score=55.13 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=50.9
Q ss_pred CCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCc
Q psy978 73 LPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQ 152 (695)
Q Consensus 73 ~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q 152 (695)
|=.+.|.|++||+|+ ++|.....++++..-+ ...| | .+.-...+|++|+|.| +++|+|-|+|- .|
T Consensus 39 F~P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf--~~~G~Y~Y~C~--pH 103 (115)
T TIGR03102 39 FDPPAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTF--EEPGIYLYVCV--PH 103 (115)
T ss_pred EeCCEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEe--cCCcEEEEEcc--CC
Confidence 334789999999966 5543323566665421 0101 1 0111246899998888 58999999997 55
Q ss_pred CCCCceeEEEEe
Q psy978 153 RGDGSFGAFIIR 164 (695)
Q Consensus 153 ~~~Gl~G~lIV~ 164 (695)
...||.|.|+|.
T Consensus 104 ~~~gM~G~I~V~ 115 (115)
T TIGR03102 104 EALGMKGAVVVE 115 (115)
T ss_pred CCCCCEEEEEEC
Confidence 667999999984
No 54
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=96.94 E-value=0.0045 Score=54.47 Aligned_cols=83 Identities=17% Similarity=0.286 Sum_probs=57.6
Q ss_pred ceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCC
Q psy978 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~ 552 (695)
...+.++.|++|+|+ |.+ ...|-+.++.-.+..-. .+ .......+++.+.+|
T Consensus 16 P~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~----------~~-------------~~~~~~~~~~~~~pG 67 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGV----------KE-------------LAKSLSHKDLLNSPG 67 (99)
T ss_pred CCEEEECCCCEEEEE--ECC---CCCceEEECCCCCccch----------hh-------------hcccccccccccCCC
Confidence 456899999999887 554 34687776543221100 00 000123466778888
Q ss_pred CEEEEEEEecCceeeEEeecchhhhhcCceEEEEe
Q psy978 553 GFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V 587 (695)
....+.|.+ ||.|.|||- -|...||...+.|
T Consensus 68 ~t~~~tF~~--~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 68 ESYEVTFST--PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred CEEEEEeCC--CEEEEEEcC--CccccCCEEEEEE
Confidence 888887776 999999998 8999999999887
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.86 E-value=0.0049 Score=56.87 Aligned_cols=61 Identities=15% Similarity=0.322 Sum_probs=48.6
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
..+.++.|+.|+|.+.|.+ ..+|.|-++++.+ ...|++|.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi-------------------------------------s~~I~pGe 100 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKS---PISEGFSIDAYGI-------------------------------------SEVIKAGE 100 (135)
T ss_pred CEEEECCCCEEEEEEEeCC---CCccceEECCCCc-------------------------------------ceEECCCC
Confidence 3588999999999999987 4567776665431 12367888
Q ss_pred EEEEEEEecCceeeEEeecch
Q psy978 554 FTIIRFHATNPGYWLFHCHIE 574 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~ 574 (695)
...++|.|+-||.+-|||-+-
T Consensus 101 t~TitF~adKpG~Y~y~C~~H 121 (135)
T TIGR03096 101 TKTISFKADKAGAFTIWCQLH 121 (135)
T ss_pred eEEEEEECCCCEEEEEeCCCC
Confidence 999999999999999999653
No 56
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=96.59 E-value=0.012 Score=54.01 Aligned_cols=75 Identities=21% Similarity=0.287 Sum_probs=51.1
Q ss_pred CeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCCC
Q psy978 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGD 155 (695)
Q Consensus 76 P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~ 155 (695)
-.|+|.+||+ |++.|.. ..+++++.-+.. . + +|.-.+ .-.+|++|++.|. .+|+|-|+|- -|+..
T Consensus 54 A~v~v~pGDT--Vtw~~~d-~~~Hnv~~~~~~---~-~-~g~~~~---~~~~~~s~~~Tfe--~~G~Y~Y~C~--PH~~~ 118 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTD-SVGHNVTAVGGM---D-P-EGSGTL---KAGINESFTHTFE--TPGEYTYYCT--PHPGM 118 (128)
T ss_pred cEEEECCCCE--EEEEECC-CCCceEEEeCCC---C-c-cccccc---ccCCCcceEEEec--ccceEEEEec--cCCCC
Confidence 4899999999 6677775 347887765543 1 1 232221 2334566666665 5999999994 45667
Q ss_pred CceeEEEEeC
Q psy978 156 GSFGAFIIRK 165 (695)
Q Consensus 156 Gl~G~lIV~~ 165 (695)
||.|.|+|.+
T Consensus 119 gM~G~IvV~~ 128 (128)
T COG3794 119 GMKGKIVVGE 128 (128)
T ss_pred CcEEEEEeCC
Confidence 9999999963
No 57
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.72 E-value=0.041 Score=62.97 Aligned_cols=79 Identities=19% Similarity=0.250 Sum_probs=57.9
Q ss_pred ceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCC
Q psy978 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~ 552 (695)
...+.++.|+.|.+.|.|.....+..|-|-+-++... +.+.||
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~-------------------------------------~dv~PG 596 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN-------------------------------------MEVAPQ 596 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCcc-------------------------------------EEEcCC
Confidence 3358899999999999997543356777776544321 234577
Q ss_pred CEEEEEEEecCceeeEEeecchhhh-hcCceEEEEec
Q psy978 553 GFTIIRFHATNPGYWLFHCHIEFHV-ETGMALVFKVG 588 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi~~H~-~~GM~~v~~V~ 588 (695)
....+.|+|+.||+|.+||...-|. ..+|...+.|.
T Consensus 597 ~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVe 633 (635)
T PRK02888 597 ATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVE 633 (635)
T ss_pred ceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEE
Confidence 8899999999999999999874332 13788877774
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.65 E-value=0.053 Score=48.07 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=42.2
Q ss_pred ceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCC
Q psy978 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~ 552 (695)
...+.++.|+.|.+++.|.+ ...|-|.+-+. .. ...|++|
T Consensus 34 P~~i~v~~G~~v~l~~~N~~---~~~h~~~i~~~------------------------------------~~-~~~l~~g 73 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNND---SRPHEFVIPDL------------------------------------GI-SKVLPPG 73 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-S---SS-EEEEEGGG------------------------------------TE-EEEE-TT
T ss_pred cCEEEEcCCCeEEEEEEECC---CCcEEEEECCC------------------------------------ce-EEEECCC
Confidence 34699999999999999987 33454444331 11 2557889
Q ss_pred CEEEEEEEecCceeeEEeecchhhhhcCc
Q psy978 553 GFTIIRFHATNPGYWLFHCHIEFHVETGM 581 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM 581 (695)
....+.|.++.||.|-|+|-+-.+ ..|.
T Consensus 74 ~~~~~~f~~~~~G~y~~~C~~~~~-m~G~ 101 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEFYCTMHPN-MKGT 101 (104)
T ss_dssp -EEEEEEEE-S-EEEEEB-SSS-T-TB--
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCc-ceec
Confidence 999999999999999999995544 3444
No 59
>PRK02710 plastocyanin; Provisional
Probab=94.30 E-value=0.22 Score=45.37 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=50.2
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
..+.++.|++|+|+ |.+ ...|.+.+.+..+. . .++ ..+.+|.
T Consensus 47 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~~-----------~---------------------~~~-~~~~pg~ 88 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNK---LAPHNAVFDGAKEL-----------S---------------------HKD-LAFAPGE 88 (119)
T ss_pred CEEEEcCCCEEEEE--ECC---CCCceEEecCCccc-----------c---------------------ccc-cccCCCC
Confidence 35899999999885 544 34788765432110 0 111 2356676
Q ss_pred EEEEEEEecCceeeEEeecchhhhhcCceEEEEe
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V 587 (695)
...+.|.. ||.+-|+|= .|...||-..+.|
T Consensus 89 t~~~tF~~--~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 89 SWEETFSE--AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred EEEEEecC--CEEEEEEcC--CCccCCcEEEEEE
Confidence 76777775 999999997 7999999999987
No 60
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.82 E-value=0.32 Score=44.42 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=51.6
Q ss_pred CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcccc-CcC
Q psy978 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTG-SQR 153 (695)
Q Consensus 75 GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~-~q~ 153 (695)
.+.|.+..|++|++.+++.. .-++....++..+ +| +-||+.-...|+++++|+|+..|..- ...
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----~d---------~~PG~~~~~~~~~~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----MD---------AIPGRTNSVTFTPDKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----EE---------EBTTCEEEEEEEESSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcCC--ccccccccccCcc----cc---------cccccceeeeeeeccCCcEEEcCccccCcC
Confidence 37899999999999999974 4455554444322 22 67899999999999999999999842 122
Q ss_pred CCCceeEEEE
Q psy978 154 GDGSFGAFII 163 (695)
Q Consensus 154 ~~Gl~G~lIV 163 (695)
-.-|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 2236666665
No 61
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=93.21 E-value=0.65 Score=40.72 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=33.0
Q ss_pred ceeEeCCCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEe
Q psy978 545 DTVTVPDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587 (695)
Q Consensus 545 DTv~Vp~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V 587 (695)
.+..+.+|....++|. .||.|.|+|- - |...||-..+.|
T Consensus 60 ~~~~~~~G~~~~~tF~--~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 60 SSPLLAPGETYSVTFT--KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp EEEEBSTTEEEEEEEE--SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred cceecCCCCEEEEEeC--CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 5666777777777777 9999999999 4 999999999887
No 62
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=90.31 E-value=1.9 Score=39.03 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEeccC
Q psy978 551 DGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEH 590 (695)
Q Consensus 551 ~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~ 590 (695)
.+....+.| +.||.+-|+|= .|...||-..+.|+++
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 355545555 68999999998 8999999999999863
No 63
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=86.35 E-value=3.5 Score=37.58 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=33.0
Q ss_pred CCCCCCeEEEEEEcC--CCee-eEEEccccCcCCCCceeEEEE
Q psy978 124 PVPPRSTFRYKFNAD--SPGT-HFWHSHTGSQRGDGSFGAFII 163 (695)
Q Consensus 124 pI~PG~~~tY~f~~~--~~GT-~wYHsH~~~q~~~Gl~G~lIV 163 (695)
-|.||++.+..|++. ++|+ |-|-|-.-.|.+ .|.|.|.+
T Consensus 84 liggGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 84 VIGGGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred ccCCCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 378999999999985 6886 999999988886 68998763
No 64
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=86.15 E-value=3.1 Score=42.84 Aligned_cols=77 Identities=17% Similarity=0.010 Sum_probs=58.9
Q ss_pred CeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccc-cCcCC
Q psy978 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHT-GSQRG 154 (695)
Q Consensus 76 P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~-~~q~~ 154 (695)
..|.+..|.+|++.++-.. .-++....++..+ +| .-||...+..++++++|+|.-+|+. -...-
T Consensus 137 n~l~lPv~~~V~f~ltS~D--ViHsF~IP~l~~k----~d---------~iPG~~~~~~~~~~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD--VIHSFWIPQLGGK----ID---------AIPGMTTELWLTANKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEech--hceeEEecCCCce----ee---------ecCCceEEEEEecCCCeEEEEEcHhhcCCCc
Confidence 8999999999999998773 4444444444322 23 5688999999999999999999994 34455
Q ss_pred CCceeEEEEeCCC
Q psy978 155 DGSFGAFIIRKPR 167 (695)
Q Consensus 155 ~Gl~G~lIV~~~~ 167 (695)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 5799999998765
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=85.05 E-value=3.4 Score=39.06 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=64.2
Q ss_pred CCCCCeEEEEeCCEEEEEEeeCCCCC-CceE--------ee-CCCccCCCCCCCC--CCCccccCCCCCCeEEEEEEcCC
Q psy978 72 QLPGPAVDVCVGDHVIVNLHNGLMEE-STSI--------HW-HGHHQVDSPYMDG--VPHLTQCPVPPRSTFRYKFNADS 139 (695)
Q Consensus 72 ~~PGP~I~v~~GD~v~V~v~N~l~~~-~~si--------H~-HGl~~~~~~~~DG--~p~vtqcpI~PG~~~tY~f~~~~ 139 (695)
.|++-.++++.|.+++..+.|..... ..++ || |.... +-|++ .--+ -+.||++-+..+...+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v---~L~PG~s~elvv~ft~ 132 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTV---TLAPGKSGELVVVFTG 132 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCccee---EeCCCCcEEEEEEecC
Confidence 36778999999999999998875211 1111 11 22222 12332 1123 3899999999999999
Q ss_pred CeeeEEEccccCcCCCCceeEEEEeC
Q psy978 140 PGTHFWHSHTGSQRGDGSFGAFIIRK 165 (695)
Q Consensus 140 ~GT~wYHsH~~~q~~~Gl~G~lIV~~ 165 (695)
+|.|-.-|-...++..||.|-|.|.+
T Consensus 133 ~g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 133 AGKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred CccEEEEecCCCcccCCcEEEEEeCC
Confidence 99999999999999999999998853
No 66
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=84.01 E-value=3.6 Score=41.04 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=55.7
Q ss_pred CeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEccc--cCcC
Q psy978 76 PAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHT--GSQR 153 (695)
Q Consensus 76 P~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~--~~q~ 153 (695)
..|.+..|+.|++++++.. .- ||...+. ..+ |.-+-||..-+..|+++++|+|...|.. |..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D--V~-----Hsf~ip~---~~~-----k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~- 180 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD--VI-----HSFWVPE---LGG-----KIDAIPGQYNALWFNADEPGVYYGYCAELCGAG- 180 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc--hh-----hcccccc---cCc-----eEEecCCcEEEEEEEeCCCEEEEEEehhhCCcC-
Confidence 4899999999999999874 22 5554422 111 2236689999999999999999999984 322
Q ss_pred CCCceeEEEEeCCC
Q psy978 154 GDGSFGAFIIRKPR 167 (695)
Q Consensus 154 ~~Gl~G~lIV~~~~ 167 (695)
-..|.+-++|.+++
T Consensus 181 h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 181 HSLMLFKVVVVERE 194 (201)
T ss_pred ccCCeEEEEEECHH
Confidence 24689999998754
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=82.00 E-value=9.2 Score=34.85 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=52.0
Q ss_pred cceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC
Q psy978 472 CTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD 551 (695)
Q Consensus 472 ~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~ 551 (695)
..+.+.+|.|+.|.+.|.+.+ ..|-|.+-+....+ .+.|
T Consensus 44 ~~~~l~lp~g~~v~~~ltS~D----ViHsf~ip~~~~k~-------------------------------------d~~P 82 (120)
T PF00116_consen 44 TDNELVLPAGQPVRFHLTSED----VIHSFWIPELGIKM-------------------------------------DAIP 82 (120)
T ss_dssp BSSEEEEETTSEEEEEEEESS----S-EEEEETTCTEEE-------------------------------------EEBT
T ss_pred ccceecccccceEeEEEEcCC----ccccccccccCccc-------------------------------------cccc
Confidence 345799999999999999875 57888776544332 2356
Q ss_pred CCEEEEEEEecCceeeEEeecchhhhh-cCceEEEEe
Q psy978 552 GGFTIIRFHATNPGYWLFHCHIEFHVE-TGMALVFKV 587 (695)
Q Consensus 552 ~G~~vIRF~AdNPG~Wl~HCHi~~H~~-~GM~~v~~V 587 (695)
|-...+.|.++.||.+-..|...=... ..|-..++|
T Consensus 83 G~~~~~~~~~~~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 83 GRTNSVTFTPDKPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp TCEEEEEEEESSSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred ccceeeeeeeccCCcEEEcCccccCcCcCCCeEEEEE
Confidence 778899999999999999997653222 235444443
No 68
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=81.38 E-value=11 Score=41.09 Aligned_cols=84 Identities=19% Similarity=0.284 Sum_probs=56.1
Q ss_pred EEEEc-CCCCCCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCc--cccCCCCCCeEEEEEEcCCCee
Q psy978 66 ITVVN-RQLPGPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHL--TQCPVPPRSTFRYKFNADSPGT 142 (695)
Q Consensus 66 ~~~iN-G~~PGP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~v--tqcpI~PG~~~tY~f~~~~~GT 142 (695)
.++|+ +++--..+.|..|+ +++.|+|.. ..++. |-= .+|+ .+ ..-.|.||.+.++.+++ .+|+
T Consensus 33 ~Vti~d~~c~p~~~tVpAG~-~~f~V~N~~-~~~~E--fe~--------~~~~-~vv~e~EnIaPG~s~~l~~~L-~pGt 98 (375)
T PRK10378 33 KVTVNDKQCEPMTLTVNAGK-TQFIIQNHS-QKALE--WEI--------LKGV-MVVEERENIAPGFSQKMTANL-QPGE 98 (375)
T ss_pred EEEEECCccccCceeeCCCC-EEEEEEeCC-CCcce--EEe--------eccc-cccccccccCCCCceEEEEec-CCce
Confidence 34444 46766799999996 999999996 34322 210 1121 00 11269999998887776 7999
Q ss_pred eEEEccccCcCCCCceeEEEEeCCC
Q psy978 143 HFWHSHTGSQRGDGSFGAFIIRKPR 167 (695)
Q Consensus 143 ~wYHsH~~~q~~~Gl~G~lIV~~~~ 167 (695)
|-|+| +.+ ..+.|.|+|.++.
T Consensus 99 Y~~~C--~~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 99 YDMTC--GLL--TNPKGKLIVKGEA 119 (375)
T ss_pred EEeec--CcC--CCCCceEEEeCCC
Confidence 99999 443 3358999998643
No 69
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=80.12 E-value=5.9 Score=37.47 Aligned_cols=93 Identities=25% Similarity=0.346 Sum_probs=64.6
Q ss_pred eeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcc-cccccccCCCCCCCccceeEeCCCC
Q psy978 475 VVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDM-DAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 475 ~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~-~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
.+.++.|+++..++.|.+ ..-|=|=+- ++....+ .. ...... |.. ---..++.|-||-
T Consensus 64 ~~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~~----~~--~~~~~~~Dme---------~d~~~~v~L~PG~ 122 (158)
T COG4454 64 SFEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNLE----HV--THMILADDME---------HDDPNTVTLAPGK 122 (158)
T ss_pred cccccCCcEEeeeecCcc---cceEEEecc---Cccccch----hH--HHhhhCCccc---------cCCcceeEeCCCC
Confidence 477889999999999987 345555433 2211111 00 000000 000 1246789999999
Q ss_pred EEEEEEEecCceeeEEeecchhhhhcCceEEEEec
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVG 588 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~ 588 (695)
..-+-..+.+||.+.|-|-|-+|-+.||-..|.|.
T Consensus 123 s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 123 SGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999999999999998874
No 70
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=77.48 E-value=16 Score=30.74 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=43.8
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
..+.++.|++|.|+ |.+ ...|-.+++.-.+ + ... +.. ..+.++.
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~--------~-~~~---------------------~~~-~~~~~g~ 54 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL--------G-EAA---------------------LKG-PMMKKEQ 54 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC--------c-ccc---------------------ccc-cccCCCC
Confidence 45899999999884 554 3478887654221 0 000 111 1123443
Q ss_pred EEEEEEEecCceeeEEeecchhhhhcCceEEEEe
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKV 587 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V 587 (695)
. .+|.++.||.|.|||=+ |- +|-..+.|
T Consensus 55 ~--~~~tf~~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 55 A--YSLTFTEAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred E--EEEECCCCEEEEEEcCC--CC--CCeEEEEE
Confidence 3 44566889999999986 54 47777766
No 71
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=75.00 E-value=29 Score=33.77 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=58.8
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
..+.+|.|-.|++.|.|.. ..+| ++-|+..+. ++.-......|.. .+.+--..|..-..=-++.|.
T Consensus 85 mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t---~~P~~~~~s~dgk-il~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNST---QTPRGPIWAHTGK-IINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred eEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCC---CCCCccccccCce-eEeecccccCccccccccccc
Confidence 4688999999999999987 3444 555654331 1110000000100 000000011111111233444
Q ss_pred EEEEEEEecCceeeEEeecchhhhhcCceEEEEecc
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~ 589 (695)
...+-|.+--||.+.+=|-+.-|.+.||-..+.|..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 555666667899999999999999999999998864
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=74.80 E-value=14 Score=36.82 Aligned_cols=74 Identities=26% Similarity=0.340 Sum_probs=53.1
Q ss_pred ceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCC
Q psy978 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~ 552 (695)
.+.+.+|.|+.|++.+.+.+ ..|.| +|-+.+ + ..| +-||
T Consensus 116 ~~~l~vp~g~~v~~~~ts~D----V~Hsf-------~ip~~~--~-------------------------k~d---a~PG 154 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSKD----VIHSF-------WVPELG--G-------------------------KID---AIPG 154 (201)
T ss_pred cCEEEEEcCCEEEEEEEeCc----hhhcc-------cccccC--c-------------------------eEE---ecCC
Confidence 34689999999999998865 34544 443211 0 122 3457
Q ss_pred CEEEEEEEecCceeeEEeecc---hhhhhcCceEEEEecc
Q psy978 553 GFTIIRFHATNPGYWLFHCHI---EFHVETGMALVFKVGE 589 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi---~~H~~~GM~~v~~V~~ 589 (695)
-...+.|.++.||.+...|-- ..| ..|...++|.+
T Consensus 155 ~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~~~v~v~~ 192 (201)
T TIGR02866 155 QYNALWFNADEPGVYYGYCAELCGAGH--SLMLFKVVVVE 192 (201)
T ss_pred cEEEEEEEeCCCEEEEEEehhhCCcCc--cCCeEEEEEEC
Confidence 788999999999999999988 456 56777777754
No 73
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=72.12 E-value=22 Score=32.50 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=48.2
Q ss_pred eeEEEec-CcEEEEEEEeCCCCCccEEEEEcCcceeE--------e-------cCCCCcccee----EEeEEEEcCCceE
Q psy978 237 EVFTVKQ-GHSYRFRIINAGYLNCPIELSIANHTLTA--------I-------NSDGGDIKPI----SVGSIVSYAGERW 296 (695)
Q Consensus 237 ~~~~v~~-G~~~rlRliNa~~~~~~~~~~i~gh~~~V--------i-------a~DG~~v~p~----~~d~l~l~pGeR~ 296 (695)
..|.|++ ++.+.+.|-|.|... -..=||++-| | +.|-+|+++- ...+=+|++||..
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lp----k~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~ 91 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLP----KAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKT 91 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCc----hhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceE
Confidence 4789998 489999999998643 1112344333 2 2355666542 4456689999999
Q ss_pred EEEEEcCC--CCcceEEEE
Q psy978 297 DFILNATH--HVGNYWIKM 313 (695)
Q Consensus 297 dVlv~a~~--~~g~Y~Ir~ 313 (695)
+|-+++.. +.++|..-.
T Consensus 92 svtF~~~~l~~g~~Y~f~C 110 (125)
T TIGR02695 92 SVTFDVSKLSAGEDYTFFC 110 (125)
T ss_pred EEEEECCCCCCCCcceEEE
Confidence 99999863 434586543
No 74
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=71.64 E-value=39 Score=33.43 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=57.7
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhccccccccc-CCCCCCCccceeEeCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIR-RNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~-~n~~~P~~rDTv~Vp~~ 552 (695)
-.+.+|.|-.|.+.+.|.+ ...| .|-|+..+. +. +... ....+|++- +-...+.--..--++.|
T Consensus 86 m~i~VPAGw~V~i~f~N~~---~l~H-------nl~iv~~~~---~~-p~~~-~i~~DgkIl~~~G~s~~~~~~~GI~~G 150 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQE---SLPH-------NLVIVQNDT---PT-PNNP-PISSDGKILLYVGASPGNYTSNGISSG 150 (196)
T ss_pred EEEEEcCCCEEEEEEEcCC---CCCe-------eEEEEeCCC---CC-CCcc-ccCCCCceeeeccCCCCccccCCccCC
Confidence 3588999999999999986 3444 666774321 10 0000 000011110 00000100000112334
Q ss_pred CEEEEEEEecCceeeEEeecchhhhhcCceEEEEeccC
Q psy978 553 GFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGEH 590 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~~ 590 (695)
.....-|..--||.+.|=|-+.-|.+.||-..|.|...
T Consensus 151 ~s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 151 QSASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred ceeeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 33333455557999999999999999999999999754
No 75
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=69.85 E-value=27 Score=31.62 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=28.1
Q ss_pred CCCCEEEEEEEecCceeeEEeecchhhhhcCceEEEEec
Q psy978 550 PDGGFTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVG 588 (695)
Q Consensus 550 p~~G~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~ 588 (695)
.+|....+.| +.||.+-|+|= .|..+||-..+.|+
T Consensus 81 ~~G~t~s~Tf--~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 81 EEGTTYEHTF--EEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCCCEEEEEe--cCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 4455555555 78999999998 79999999999884
No 76
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=64.81 E-value=57 Score=27.53 Aligned_cols=65 Identities=12% Similarity=0.256 Sum_probs=35.4
Q ss_pred EEEEEEEeCCCCCccEEEEEc-Ccc--eeEecCCCCccc--------eeEEeEEEEcCCceEEEEEEcCCC---CcceEE
Q psy978 246 SYRFRIINAGYLNCPIELSIA-NHT--LTAINSDGGDIK--------PISVGSIVSYAGERWDFILNATHH---VGNYWI 311 (695)
Q Consensus 246 ~~rlRliNa~~~~~~~~~~i~-gh~--~~Via~DG~~v~--------p~~~d~l~l~pGeR~dVlv~a~~~---~g~Y~I 311 (695)
...|++.|.+.. .+.|.+. |++ +.|...+|..+- ........|.|||...+-.+.+.. +|.|.+
T Consensus 3 ~~~l~v~N~s~~--~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 3 EFTLTVTNNSDE--PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEEEEE-SSS---EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEEEEeCCCC--eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 356777887764 3556553 443 455555676652 224567899999998888887753 688976
Q ss_pred E
Q psy978 312 K 312 (695)
Q Consensus 312 r 312 (695)
.
T Consensus 81 ~ 81 (82)
T PF12690_consen 81 E 81 (82)
T ss_dssp E
T ss_pred e
Confidence 5
No 77
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=63.48 E-value=7.3 Score=42.83 Aligned_cols=77 Identities=25% Similarity=0.212 Sum_probs=49.0
Q ss_pred eEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcccc-CcCCC
Q psy978 77 AVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTG-SQRGD 155 (695)
Q Consensus 77 ~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~-~q~~~ 155 (695)
++.|++||.|.+.++|--. ..-- .||.-... -|+.+ -+.|-++-.|.|.++.+|-+||.|-.. .....
T Consensus 559 ef~Vkq~DEVt~l~tnld~-Ved~--thgfv~p~----~~v~~----~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 559 EFKVKQGDEVTVLTTNLDE-VEDL--THGFVIPN----YGVNM----EVKPQRTASVTFYADKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEecCcEEEEEecccce-eccc--cceeeecc----CceEE----EEccCCceEEEEEccCCeeeehhhhhHHHHHHH
Confidence 6788888888888887642 1111 24433221 23333 278899999999999999999988643 22222
Q ss_pred CceeEEEEe
Q psy978 156 GSFGAFIIR 164 (695)
Q Consensus 156 Gl~G~lIV~ 164 (695)
-|.|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 356666664
No 78
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=50.78 E-value=1.1e+02 Score=27.95 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=43.3
Q ss_pred eEEEecCcEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCcc-ceeEEeEEEEcCCceEEEEEEcCCCCcceEE
Q psy978 238 VFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDI-KPISVGSIVSYAGERWDFILNATHHVGNYWI 311 (695)
Q Consensus 238 ~~~v~~G~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v-~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~I 311 (695)
.+.+.....|+|.+...+ ...|.|+|. .|++.++..- .+.....+.|..|++|.|.|...+..+...+
T Consensus 51 ~i~~~~~G~y~f~~~~~~----~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~~~~~~~ 119 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD----GARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEAGTGGLL 119 (136)
T ss_pred EEECCCCccEEEEEEcCC----cEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEeCCCCEEE
Confidence 455555677999986544 357889885 3455444322 2334557889999999998887654443333
No 79
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=47.21 E-value=1.7e+02 Score=25.09 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=36.7
Q ss_pred EEecCcEEE--EEEEeCCCCCccEEEEEcC---cceeEecCCCCccceeEEeEEEEcCCceEEEEEEcC--CCCcceEE
Q psy978 240 TVKQGHSYR--FRIINAGYLNCPIELSIAN---HTLTAINSDGGDIKPISVGSIVSYAGERWDFILNAT--HHVGNYWI 311 (695)
Q Consensus 240 ~v~~G~~~r--lRliNa~~~~~~~~~~i~g---h~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~--~~~g~Y~I 311 (695)
.+..|++|. +.|.|.+...+.+.+.... ..|.+- | ..-.|.||+..++-|.+. .+.|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~--------~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVE--------P---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEE--------C---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 466777774 9999999765333333322 112221 1 123589999988888876 34566653
No 80
>KOG3210|consensus
Probab=45.21 E-value=7.9 Score=36.89 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=28.4
Q ss_pred CcceeecCccccccccccccccccCCchhhhh
Q psy978 657 TDDVRVNTSDEHLDFTHNRNILDSRFWPEVAD 688 (695)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (695)
++-+-+|+.++-+--+|+.|+|+.+|-||+||
T Consensus 175 l~~~~~nG~~~iVAa~Q~~~iL~TSFHPELa~ 206 (226)
T KOG3210|consen 175 LYKLDGNGQELIVAAKQKNNILATSFHPELAE 206 (226)
T ss_pred EEEecCCCcEEEEEEeccCCEeeeecChhhhc
Confidence 56677888888889999999999999999985
No 81
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=45.04 E-value=87 Score=28.93 Aligned_cols=32 Identities=31% Similarity=0.465 Sum_probs=24.6
Q ss_pred EEEEEEEecCceeeEEeecchhhhhcCceEEEEecc
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHVETGMALVFKVGE 589 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~~~GM~~v~~V~~ 589 (695)
....-|. -||.+.|.|- .|..+||-..+.|++
T Consensus 97 s~~~Tfe--~~G~Y~Y~C~--PH~~~gM~G~IvV~~ 128 (128)
T COG3794 97 SFTHTFE--TPGEYTYYCT--PHPGMGMKGKIVVGE 128 (128)
T ss_pred ceEEEec--ccceEEEEec--cCCCCCcEEEEEeCC
Confidence 3344444 4999999995 599999999998863
No 82
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=44.54 E-value=59 Score=27.43 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=31.1
Q ss_pred eEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCC---ccccCCCCCCeEEEEEEcC--C--CeeeEE
Q psy978 77 AVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPH---LTQCPVPPRSTFRYKFNAD--S--PGTHFW 145 (695)
Q Consensus 77 ~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~---vtqcpI~PG~~~tY~f~~~--~--~GT~wY 145 (695)
+|+..-|.+..+.|.|.-+ + ..| -|++|..+ +.+-.|.||++.+|++..+ . +|+|..
T Consensus 17 ~l~f~sgq~~D~~v~d~~g-~---~vw--------rwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 17 TLQFPSGQRYDFVVKDKEG-K---EVW--------RWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEESSS--EEEEEE-TT------EEE--------ETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEeCCCCEEEEEEECCCC-C---EEE--------EecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 5666677777777776642 1 111 27787653 3335689999999999984 3 788854
No 83
>COG1470 Predicted membrane protein [Function unknown]
Probab=43.18 E-value=5.4e+02 Score=29.11 Aligned_cols=75 Identities=23% Similarity=0.311 Sum_probs=48.6
Q ss_pred eEEEecC--cEEEEEEEeCCCCC-ccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCce--EEEEEEcCC--CCcceE
Q psy978 238 VFTVKQG--HSYRFRIINAGYLN-CPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGER--WDFILNATH--HVGNYW 310 (695)
Q Consensus 238 ~~~v~~G--~~~rlRliNa~~~~-~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR--~dVlv~a~~--~~g~Y~ 310 (695)
.++..+| +..+++|-|.|... .-+.+.|++-.-+=+.+|+..+ + .|.|||| +++-++++. .+|+|.
T Consensus 390 ~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~ 462 (513)
T COG1470 390 RLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYR 462 (513)
T ss_pred EEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEE
Confidence 5667777 57799999999543 1245666665556666666533 2 2456666 455555543 468999
Q ss_pred EEEeeccCC
Q psy978 311 IKMRGLMDC 319 (695)
Q Consensus 311 Ir~~~~~~~ 319 (695)
|.+++.+|.
T Consensus 463 i~i~~ksDq 471 (513)
T COG1470 463 ITITAKSDQ 471 (513)
T ss_pred EEEEEeecc
Confidence 999887774
No 84
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=42.44 E-value=1.4e+02 Score=27.29 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=43.5
Q ss_pred eEEEecCcEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCcc-------ceeEEeEEEEcCCceEEEEEEcCCC
Q psy978 238 VFTVKQGHSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDI-------KPISVGSIVSYAGERWDFILNATHH 305 (695)
Q Consensus 238 ~~~v~~G~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v-------~p~~~d~l~l~pGeR~dVlv~a~~~ 305 (695)
.|.+....+|+|++-..+ ...|.|+|..+ ++.++..- .+.....+.|..|++|.|-|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d----~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD----GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS----EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc----cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 567777788999999544 46788998765 55555433 4567778899999999999886543
No 85
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=41.27 E-value=1.8e+02 Score=23.76 Aligned_cols=64 Identities=20% Similarity=0.311 Sum_probs=28.7
Q ss_pred ecCcEE--EEEEEeCCCCC-ccEEEEEcCcceeEecCCCCc--cceeEEeEEEEcCCceEEEEEEc----CCCCcceEEE
Q psy978 242 KQGHSY--RFRIINAGYLN-CPIELSIANHTLTAINSDGGD--IKPISVGSIVSYAGERWDFILNA----THHVGNYWIK 312 (695)
Q Consensus 242 ~~G~~~--rlRliNa~~~~-~~~~~~i~gh~~~Via~DG~~--v~p~~~d~l~l~pGeR~dVlv~a----~~~~g~Y~Ir 312 (695)
++|+.. .+.+-|.+... ..+.+++. .=+|=. ..|..+. .|.|||...+-++. +..+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 456544 57788887543 12334333 223322 2344444 78999875555443 3356899887
Q ss_pred Ee
Q psy978 313 MR 314 (695)
Q Consensus 313 ~~ 314 (695)
+.
T Consensus 73 ~~ 74 (78)
T PF10633_consen 73 VT 74 (78)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 86
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=40.56 E-value=1.4e+02 Score=26.28 Aligned_cols=70 Identities=19% Similarity=0.256 Sum_probs=45.5
Q ss_pred EEEEeeCCCCCCceEeeCCCccCCCCCCC-CCCCccccCCCCCCeEEEEEEcCCCeeeEEEccccCcCCCCceeEEEEeC
Q psy978 87 IVNLHNGLMEESTSIHWHGHHQVDSPYMD-GVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTGSQRGDGSFGAFIIRK 165 (695)
Q Consensus 87 ~V~v~N~l~~~~~siH~HGl~~~~~~~~D-G~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~~q~~~Gl~G~lIV~~ 165 (695)
.|.++|.|. ....|..|=..-. -| |+- -+.||+++..+|..+--|+-.|.|+... .......-+.|..
T Consensus 2 ~V~I~N~L~-~~~~L~vhC~S~d----~Dlg~~-----~l~~g~~~~~~F~~~~~~~t~f~C~~~~-~~~~~~~~f~vy~ 70 (110)
T PF05938_consen 2 HVVIINNLG-PGKILTVHCKSKD----DDLGWH-----VLKPGQSYSFSFRDNFFGTTLFWCHFRW-PGGKYHHSFDVYR 70 (110)
T ss_pred EEEEEECCC-CCCeEEEEeeCCC----ccCCCE-----ECCCCCEEEEEEecCcCCceeEEEEEEE-CCccEEEEEEEEe
Confidence 488999993 3444555543311 12 222 4899999999998876688888999887 2222466676755
Q ss_pred CC
Q psy978 166 PR 167 (695)
Q Consensus 166 ~~ 167 (695)
..
T Consensus 71 ~~ 72 (110)
T PF05938_consen 71 SS 72 (110)
T ss_pred cc
Confidence 33
No 87
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=40.24 E-value=1.3e+02 Score=28.12 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=40.7
Q ss_pred cEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEE-------eEEEEcCCceE-EEEEEcC
Q psy978 245 HSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISV-------GSIVSYAGERW-DFILNAT 303 (695)
Q Consensus 245 ~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~-------d~l~l~pGeR~-dVlv~a~ 303 (695)
.+|-|.+-|.|... +.++.-.++|+ +||+++.|..+ +.+.|.|||-- .+.+.-.
T Consensus 70 ~t~t~yiKNtG~~~----~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~ 131 (154)
T COG3354 70 YTYTFYIKNTGSDS----IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA 131 (154)
T ss_pred eEEEEEEecCCCcc----cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC
Confidence 57899999999653 55688888888 89998877543 45778999987 5555533
No 88
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=40.02 E-value=61 Score=29.04 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=28.8
Q ss_pred cEEEEEEEeCCCCCccEEEEEcCc-ceeEecCCCCccceeEEeEEEEcCCceEEEEEEc
Q psy978 245 HSYRFRIINAGYLNCPIELSIANH-TLTAINSDGGDIKPISVGSIVSYAGERWDFILNA 302 (695)
Q Consensus 245 ~~~rlRliNa~~~~~~~~~~i~gh-~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a 302 (695)
-.|+|+|+|.+.....+.++++|. .+++ .- ....+.|.||+..++-|..
T Consensus 33 N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l--------~~-~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 33 NQYTLKLTNKTNQPRTYTISVEGLPGAEL--------QG-PENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEEE-SSS-EEEEEEEES-SS-EE---------E-S--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEecCCCeEE--------EC-CCcceEECCCCEEEEEEEE
Confidence 468999999998877777777763 2333 11 3457888999987765544
No 89
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=39.90 E-value=2.1e+02 Score=24.03 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=37.6
Q ss_pred EEecCcEEE--EEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEE-EEcCCceEEEEEEcCC-CCcceEEEEee
Q psy978 240 TVKQGHSYR--FRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSI-VSYAGERWDFILNATH-HVGNYWIKMRG 315 (695)
Q Consensus 240 ~v~~G~~~r--lRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l-~l~pGeR~dVlv~a~~-~~g~Y~Ir~~~ 315 (695)
.+.+|+.++ +.+.|.|... .-.+.+. +-.||..+ ....| .|.||+...+-+.... .+|.|.|++.-
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~-~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTAD-AENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS--BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCC-CCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEE
Confidence 455666664 7788998654 2233222 23455444 34445 7899999888777643 56888887643
No 90
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.54 E-value=2.2e+02 Score=28.22 Aligned_cols=76 Identities=11% Similarity=-0.073 Sum_probs=51.8
Q ss_pred eEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcccc-CcCCC
Q psy978 77 AVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTG-SQRGD 155 (695)
Q Consensus 77 ~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~-~q~~~ 155 (695)
.+.+..|..|+++++-.. .-++....++.. -+| .-||..-+..|+++++|+|.-.|..- ...-.
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~----k~d---------~~PG~~~~~~~~~~~~G~y~g~C~e~CG~~H~ 181 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNL----KMD---------AIPGRINHLFFCPDRHGVFVGYCSELCGVGHS 181 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCc----eee---------cCCCceEEEEEEcCCCEEEEEEeehhhCcCcc
Confidence 478889999999997663 333333333221 133 34899999999999999999999842 22223
Q ss_pred CceeEEEEeCCC
Q psy978 156 GSFGAFIIRKPR 167 (695)
Q Consensus 156 Gl~G~lIV~~~~ 167 (695)
.|.+.++|.+++
T Consensus 182 ~M~~~v~v~~~~ 193 (194)
T MTH00047 182 YMPIVIEVVDVD 193 (194)
T ss_pred cCcEEEEEEcCC
Confidence 578888887654
No 91
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=37.14 E-value=2.6e+02 Score=23.65 Aligned_cols=59 Identities=14% Similarity=0.152 Sum_probs=37.4
Q ss_pred cEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCCCCcceEEEEee
Q psy978 245 HSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATHHVGNYWIKMRG 315 (695)
Q Consensus 245 ~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~~~g~Y~Ir~~~ 315 (695)
..++|.|.|.|... ..|.+.. .. + ......++.|.+|++.++.+......|-|.+.+..
T Consensus 20 g~l~l~l~N~g~~~--~~~~v~~-------~~--y-~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~~ 78 (89)
T PF05506_consen 20 GNLRLTLSNPGSAA--VTFTVYD-------NA--Y-GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVTG 78 (89)
T ss_pred CEEEEEEEeCCCCc--EEEEEEe-------CC--c-CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEEc
Confidence 48899999998654 4444433 11 1 11122567788888888888776566777766643
No 92
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=36.08 E-value=1.5e+02 Score=23.72 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.1
Q ss_pred eeEEEecCcEEEEEEEeCCC
Q psy978 237 EVFTVKQGHSYRFRIINAGY 256 (695)
Q Consensus 237 ~~~~v~~G~~~rlRliNa~~ 256 (695)
..|+++.|+++++.+-+.+.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~ 24 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG 24 (70)
T ss_dssp EEEEESTTEEEEEEECETTS
T ss_pred EEEEEcCCCEEEEEEcCCCC
Confidence 47899999999988866653
No 93
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.60 E-value=1.5e+02 Score=30.11 Aligned_cols=77 Identities=9% Similarity=-0.053 Sum_probs=52.5
Q ss_pred CCeEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCC-CCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcccc-Cc
Q psy978 75 GPAVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDS-PYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTG-SQ 152 (695)
Q Consensus 75 GP~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~-~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~-~q 152 (695)
...+.+..|..|++.+++.. .- |+...+.. --+| .-||..-...|+++++|+|+-.|..= ..
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D--Vi-----Hsf~ip~~~~k~d---------~~Pg~~~~~~~~~~~~g~y~~~C~e~CG~ 202 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD--VI-----HSWTVPSLGVKVD---------AIPGRLNQLSFEPKRPGVFYGQCSEICGA 202 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc--cc-----cceeccccCceeE---------CCCCcceeEEEEeCCCEEEEEECccccCc
Confidence 36789999999999999974 32 44433221 0133 45888889999999999999999842 22
Q ss_pred CCCCceeEEEEeCCC
Q psy978 153 RGDGSFGAFIIRKPR 167 (695)
Q Consensus 153 ~~~Gl~G~lIV~~~~ 167 (695)
.-..|.+.++|.+++
T Consensus 203 ~H~~M~~~v~v~~~~ 217 (228)
T MTH00140 203 NHSFMPIVVEAVPLE 217 (228)
T ss_pred CcCCCeEEEEEECHH
Confidence 223477777776643
No 94
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=32.90 E-value=1.7e+02 Score=30.20 Aligned_cols=77 Identities=17% Similarity=0.155 Sum_probs=52.7
Q ss_pred ceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCC
Q psy978 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~ 552 (695)
.+.+.+|.|+.|++.+...+ ..|-|.+-+..+++ .+-||
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHsF~IP~l~~k~-------------------------------------d~iPG 174 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHSFWIPQLGGKI-------------------------------------DAIPG 174 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hceeEEecCCCcee-------------------------------------eecCC
Confidence 45699999999999998764 34554444332221 23445
Q ss_pred CEEEEEEEecCceeeEEeecchhhhh-cCceEEEEeccC
Q psy978 553 GFTIIRFHATNPGYWLFHCHIEFHVE-TGMALVFKVGEH 590 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi~~H~~-~GM~~v~~V~~~ 590 (695)
--..+.|.++.||.+..+|+..-=.. ..|-..+.|..+
T Consensus 175 ~~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 175 MTTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred ceEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence 66788999999999999999874332 356677777654
No 95
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=31.25 E-value=99 Score=31.47 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=50.3
Q ss_pred eeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCCC
Q psy978 474 NVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDGG 553 (695)
Q Consensus 474 ~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~G 553 (695)
+-+.+|.|..|++.+...+ ..| +|+|-+.+ + .+|.+ ||-
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViH-------SF~VP~l~--~-------------------------K~Dai---PG~ 177 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMN-------SFFIPQLG--S-------------------------QIYAM---AGM 177 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhh-------hhhhhhcC--C-------------------------eeecC---CCc
Confidence 3589999999999998765 334 55664322 0 34544 466
Q ss_pred EEEEEEEecCceeeEEeecchhhh-hcCceEEEEecc
Q psy978 554 FTIIRFHATNPGYWLFHCHIEFHV-ETGMALVFKVGE 589 (695)
Q Consensus 554 ~~vIRF~AdNPG~Wl~HCHi~~H~-~~GM~~v~~V~~ 589 (695)
...+.|++|.||.+.-.|--.-=. ...|...+.|..
T Consensus 178 ~n~~~~~~~~~G~y~g~CaE~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 178 QTKLHLIANEPGVYDGISANYSGPGFSGMKFKAIATD 214 (226)
T ss_pred eEEEEEEeCCCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 778999999999999999643211 135666666543
No 96
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=30.60 E-value=1.3e+02 Score=27.27 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=15.0
Q ss_pred cccCCCCCCeEEEEEEc
Q psy978 121 TQCPVPPRSTFRYKFNA 137 (695)
Q Consensus 121 tqcpI~PG~~~tY~f~~ 137 (695)
+.|||.+|+.++|.+..
T Consensus 75 ~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 75 TSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCCcCCcEEEEEEee
Confidence 57999999999999864
No 97
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.33 E-value=1.9e+02 Score=29.49 Aligned_cols=77 Identities=14% Similarity=0.248 Sum_probs=52.5
Q ss_pred cceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC
Q psy978 472 CTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD 551 (695)
Q Consensus 472 ~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~ 551 (695)
+.+.+.+|.|..|.+.+.+.+ ..|-| +|-+.+ . .. ..-|
T Consensus 138 ~~n~l~lP~~~~v~~~~ts~D----ViHsf-------~ip~~~---~------------------------k~---d~~P 176 (228)
T MTH00140 138 VDNRLVLPYSVDTRVLVTSAD----VIHSW-------TVPSLG---V------------------------KV---DAIP 176 (228)
T ss_pred cCCeEEEeeCcEEEEEEEcCc----cccce-------eccccC---c------------------------ee---ECCC
Confidence 345789999999999999865 34544 443221 0 11 2245
Q ss_pred CCEEEEEEEecCceeeEEeecchhhh-hcCceEEEEecc
Q psy978 552 GGFTIIRFHATNPGYWLFHCHIEFHV-ETGMALVFKVGE 589 (695)
Q Consensus 552 ~G~~vIRF~AdNPG~Wl~HCHi~~H~-~~GM~~v~~V~~ 589 (695)
|-...+.|.++.||.+...|.-.=.. ...|-..++|..
T Consensus 177 g~~~~~~~~~~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 177 GRLNQLSFEPKRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CcceeEEEEeCCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 77788999999999999999876543 234666666654
No 98
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=28.65 E-value=1.2e+02 Score=28.03 Aligned_cols=49 Identities=16% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccc----eeEEeEEEEcCCceEEE
Q psy978 246 SYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIK----PISVGSIVSYAGERWDF 298 (695)
Q Consensus 246 ~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~----p~~~d~l~l~pGeR~dV 298 (695)
.|++||.|.+... +.|-...+.|...||...+ .+....=.|.|||.+.-
T Consensus 32 ~Y~ItI~N~~~~~----vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRVP----VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCCC----EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 5899999988543 5566788888888876331 22333346777776544
No 99
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=28.01 E-value=2.3e+02 Score=24.15 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=37.6
Q ss_pred EecCcEEEEEEE--eCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEcCC--CCcceEEEEee
Q psy978 241 VKQGHSYRFRII--NAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNATH--HVGNYWIKMRG 315 (695)
Q Consensus 241 v~~G~~~rlRli--Na~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a~~--~~g~Y~Ir~~~ 315 (695)
-+||+++.||++ +....... ..-....++|..-+|..+.-... ........++.-+..+. ..|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~~~~~--~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDNDFKP--PANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECTTCSC--ESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccccccc--ccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 478999999999 65521101 10012246666666655432222 13345666666666654 46899998865
No 100
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=27.90 E-value=2.3e+02 Score=27.28 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=49.9
Q ss_pred cceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC
Q psy978 472 CTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD 551 (695)
Q Consensus 472 ~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~ 551 (695)
..+.+.+|.|..|.+.+...+ ..|.|.+-.... ..|. -|
T Consensus 71 vDn~LvLP~g~~Vr~~lTS~D----VIHSF~VP~lgv----------------------------------K~Da---vP 109 (162)
T PTZ00047 71 VDKRLTLPTRTHIRFLITATD----VIHSWSVPSLGI----------------------------------KADA---IP 109 (162)
T ss_pred ecCCEEEeCCCEEEEEEEeCc----cceeeeccccCc----------------------------------eeec---cC
Confidence 455689999999999998764 346554433211 2222 24
Q ss_pred CCEEEEEEEecCceeeEEeecchhhhh-cCceEEEEec
Q psy978 552 GGFTIIRFHATNPGYWLFHCHIEFHVE-TGMALVFKVG 588 (695)
Q Consensus 552 ~G~~vIRF~AdNPG~Wl~HCHi~~H~~-~GM~~v~~V~ 588 (695)
|-...+.|.++.||.+...|.-.-=.. ..|-..++|.
T Consensus 110 Gr~n~l~~~~~~~G~y~gqCsElCG~gHs~M~~~V~vv 147 (162)
T PTZ00047 110 GRLHKINTFILREGVFYGQCSEMCGTLHGFMPIVVEAV 147 (162)
T ss_pred CceEEEEEecCCCeEEEEEcchhcCcCccCceEEEEEe
Confidence 556678899999999999998653111 2466666654
No 101
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=27.83 E-value=3.2e+02 Score=31.09 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.3
Q ss_pred eEEEecCcEEEEEEEeCCCC
Q psy978 238 VFTVKQGHSYRFRIINAGYL 257 (695)
Q Consensus 238 ~~~v~~G~~~rlRliNa~~~ 257 (695)
...++.|+++++|+.+++..
T Consensus 212 ~~~l~~Gd~V~~RvFd~~Ge 231 (478)
T PRK13211 212 SMDLKAGDKVMTRVFDANGE 231 (478)
T ss_pred CCCCCCCCEEEEEEecCCCc
Confidence 45789999999999999864
No 102
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=27.57 E-value=4.4e+02 Score=23.38 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=12.4
Q ss_pred eeEEeEEEEcCCceEEEEEEcC
Q psy978 282 PISVGSIVSYAGERWDFILNAT 303 (695)
Q Consensus 282 p~~~d~l~l~pGeR~dVlv~a~ 303 (695)
+.....+.|.+|..|.+++.-.
T Consensus 61 ~l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 61 PLLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred EEEeccEEEcCCCEEEEEEECC
Confidence 3444556666666666666543
No 103
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=27.49 E-value=43 Score=29.43 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCCCeEEEEeCCEEEEEEeeCC
Q psy978 63 KRAITVVNRQLPGPAVDVCVGDHVIVNLHNGL 94 (695)
Q Consensus 63 ~~~~~~iNG~~PGP~I~v~~GD~v~V~v~N~l 94 (695)
...-+.|||+.-=|.=.|+.||.|.|++.|..
T Consensus 32 ~~GrV~vNG~~aKpS~~VK~GD~l~i~~~~~~ 63 (100)
T COG1188 32 EGGRVKVNGQRAKPSKEVKVGDILTIRFGNKE 63 (100)
T ss_pred HCCeEEECCEEcccccccCCCCEEEEEeCCcE
Confidence 35567899998889999999999999999986
No 104
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=27.42 E-value=2.3e+02 Score=23.95 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCeEEEEe---CCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEc
Q psy978 75 GPAVDVCV---GDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNA 137 (695)
Q Consensus 75 GP~I~v~~---GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~ 137 (695)
.|.+.++. ...|.|++.|.. ..+..+...... +..+.+ .+-.|.||++.+..|.+
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g-~~~~~~~v~~~~-----y~~~~~--~~~~v~ag~~~~~~w~l 65 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPG-SAAVTFTVYDNA-----YGGGGP--WTYTVAAGQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCC-CCcEEEEEEeCC-----cCCCCC--EEEEECCCCEEEEEEee
Confidence 45555542 348999999995 567766665421 111212 23459999999999987
No 105
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.65 E-value=2e+02 Score=29.38 Aligned_cols=60 Identities=30% Similarity=0.504 Sum_probs=0.0
Q ss_pred ccceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeC
Q psy978 471 ECTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVP 550 (695)
Q Consensus 471 ~~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp 550 (695)
...+.+.+|.|..|++.+...+.. |+|+|-+.+- ..|.+
T Consensus 137 ~~~n~lvlP~~~~v~~~~tS~DVi-----------Hsf~ip~~~~---------------------------k~da~--- 175 (230)
T MTH00129 137 EADHRMVVPVESPIRVLVSAEDVL-----------HSWAVPALGV---------------------------KMDAV--- 175 (230)
T ss_pred cccceEEEecCcEEEEEEEeCccc-----------cceeccccCC---------------------------ccccC---
Q ss_pred CCCEEEEEEEecCceeeEEee
Q psy978 551 DGGFTIIRFHATNPGYWLFHC 571 (695)
Q Consensus 551 ~~G~~vIRF~AdNPG~Wl~HC 571 (695)
||....+.|.++.||.+...|
T Consensus 176 PG~~~~~~~~~~~~G~~~g~C 196 (230)
T MTH00129 176 PGRLNQTAFIASRPGVFYGQC 196 (230)
T ss_pred CCceEEEEEEeCCceEEEEEC
No 106
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=24.34 E-value=1.7e+02 Score=26.57 Aligned_cols=17 Identities=18% Similarity=0.602 Sum_probs=14.9
Q ss_pred cccCCCCCCeEEEEEEc
Q psy978 121 TQCPVPPRSTFRYKFNA 137 (695)
Q Consensus 121 tqcpI~PG~~~tY~f~~ 137 (695)
..|||..|+.++|++..
T Consensus 71 l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 71 VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred EeCCCcCCcEEEEEEee
Confidence 47999999999998864
No 107
>KOG3661|consensus
Probab=23.61 E-value=44 Score=38.66 Aligned_cols=55 Identities=25% Similarity=0.369 Sum_probs=29.0
Q ss_pred eeeeeeec--ccccceeeccccccccceeeccccCcceeecCccccccccccccccccCCchhhhhh
Q psy978 625 KKEVTTQG--SVAGDEIIPGSDDLDKKVQYEVMPTDDVRVNTSDEHLDFTHNRNILDSRFWPEVADF 689 (695)
Q Consensus 625 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (695)
.+.+|+.| -+.|-++++-.+-.-+.|+-. +-+|.+.=-+.--+.|-|||||||+-
T Consensus 466 ~a~LtV~Gdiy~sGr~m~PSDiRlKe~itE~----------~t~ealenl~klR~VdYrYKPEvA~~ 522 (1019)
T KOG3661|consen 466 DAALTVHGDIYVSGRLMHPSDIRLKEHITEV----------DTTEALENLSKLRLVDYRYKPEVAAS 522 (1019)
T ss_pred ccceEEecceEeeceecchhhhhhhhhhchh----------hHHHHHHHhhhheeeeeeeChhhhhh
Confidence 34566777 456777777444444444311 01111111112235789999999974
No 108
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.43 E-value=5.3e+02 Score=25.57 Aligned_cols=76 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred ceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCCC
Q psy978 473 TNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPDG 552 (695)
Q Consensus 473 ~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~~ 552 (695)
.+.+.+|.|..|.+.+...+ ..|.|.+-+... .+|. -||
T Consensus 115 ~~~l~lp~g~~v~~~ltS~D----ViHsf~vp~l~~----------------------------------k~d~---~PG 153 (194)
T MTH00047 115 DKPLRLVYGVPYHLLVTSSD----VIHSFSVPDLNL----------------------------------KMDA---IPG 153 (194)
T ss_pred CceEEEeCCCEEEeeeecCc----cccceeccccCc----------------------------------eeec---CCC
Confidence 34588999999999998764 456555443221 2333 357
Q ss_pred CEEEEEEEecCceeeEEeecchhhh-hcCceEEEEecc
Q psy978 553 GFTIIRFHATNPGYWLFHCHIEFHV-ETGMALVFKVGE 589 (695)
Q Consensus 553 G~~vIRF~AdNPG~Wl~HCHi~~H~-~~GM~~v~~V~~ 589 (695)
-...+.|.++-||.+..-|.-.-=. ...|-..++|.+
T Consensus 154 ~~~~~~~~~~~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 154 RINHLFFCPDRHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred ceEEEEEEcCCCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 7788999999999999999865322 235666666654
No 109
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=23.36 E-value=1.3e+02 Score=25.96 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=28.1
Q ss_pred EEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccc----eeEEeEEEEcCCceEEE
Q psy978 246 SYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIK----PISVGSIVSYAGERWDF 298 (695)
Q Consensus 246 ~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~----p~~~d~l~l~pGeR~dV 298 (695)
.|++||-|.+... +.|-...+.|...||...+ .+....=+|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~~----vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES----VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS-----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC----EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 5899999998653 5556777888888774321 11223346788886443
No 110
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=23.20 E-value=4.5e+02 Score=25.35 Aligned_cols=75 Identities=8% Similarity=-0.115 Sum_probs=47.3
Q ss_pred eEEEEeCCEEEEEEeeCCCCCCceEeeCCCccCCCCCCCCCCCccccCCCCCCeEEEEEEcCCCeeeEEEcccc-CcCCC
Q psy978 77 AVDVCVGDHVIVNLHNGLMEESTSIHWHGHHQVDSPYMDGVPHLTQCPVPPRSTFRYKFNADSPGTHFWHSHTG-SQRGD 155 (695)
Q Consensus 77 ~I~v~~GD~v~V~v~N~l~~~~~siH~HGl~~~~~~~~DG~p~vtqcpI~PG~~~tY~f~~~~~GT~wYHsH~~-~q~~~ 155 (695)
.|.+..|..|++.|+=.. .-++....++.. -+| +-||..-+..|.+.++|+|+-.|..- ...-.
T Consensus 74 ~LvLP~g~~Vr~~lTS~D--VIHSF~VP~lgv----K~D---------avPGr~n~l~~~~~~~G~y~gqCsElCG~gHs 138 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATD--VIHSWSVPSLGI----KAD---------AIPGRLHKINTFILREGVFYGQCSEMCGTLHG 138 (162)
T ss_pred CEEEeCCCEEEEEEEeCc--cceeeeccccCc----eee---------ccCCceEEEEEecCCCeEEEEEcchhcCcCcc
Confidence 467778888888886653 222222222221 134 34778788888999999999999842 11122
Q ss_pred CceeEEEEeCC
Q psy978 156 GSFGAFIIRKP 166 (695)
Q Consensus 156 Gl~G~lIV~~~ 166 (695)
.|.+.++|.++
T Consensus 139 ~M~~~V~vvs~ 149 (162)
T PTZ00047 139 FMPIVVEAVSP 149 (162)
T ss_pred CceEEEEEeCH
Confidence 47777777654
No 111
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.17 E-value=1e+02 Score=29.04 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.5
Q ss_pred CCCCCCeEEEEEEc----CCCeeeEEEcc
Q psy978 124 PVPPRSTFRYKFNA----DSPGTHFWHSH 148 (695)
Q Consensus 124 pI~PG~~~tY~f~~----~~~GT~wYHsH 148 (695)
||+||++++..+.. ...|+|.|++-
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~ 126 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVT 126 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEE
Confidence 89999999999954 24699988865
No 112
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=20.70 E-value=2.6e+02 Score=28.53 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=51.4
Q ss_pred cceeeeeCCCCEEEEEEEeCCCCCCCCCceeecCCCeEEEEEcccCccccccchhcccccccccCCCCCCCccceeEeCC
Q psy978 472 CTNVVNVPLESVVELIIIDEGVAYDANHPFHLHGHPFRVVAMERVAKNITRQDVIDMDAKGLIRRNLKDAPLKDTVTVPD 551 (695)
Q Consensus 472 ~~~~~~v~~g~vVeivl~N~~~~~~~~HPfHLHG~~F~Vv~~g~~g~~~~~~~~~~~~~~g~~~~n~~~P~~rDTv~Vp~ 551 (695)
..+.+.+|.|..|++.+...+ ..| +|+|-+.+ ...|. -|
T Consensus 138 ~~n~lvlP~~~~v~~~~tS~D----ViH-------sf~ip~lg---------------------------~k~da---iP 176 (227)
T MTH00098 138 VDNRVVLPMEMPIRMLISSED----VLH-------SWAVPSLG---------------------------LKTDA---IP 176 (227)
T ss_pred ccceEEecCCCEEEEEEEECc----ccc-------cccccccc---------------------------cceec---CC
Confidence 346789999999999998765 333 55553322 02232 35
Q ss_pred CCEEEEEEEecCceeeEEeecchhhhh-cCceEEEEecc
Q psy978 552 GGFTIIRFHATNPGYWLFHCHIEFHVE-TGMALVFKVGE 589 (695)
Q Consensus 552 ~G~~vIRF~AdNPG~Wl~HCHi~~H~~-~GM~~v~~V~~ 589 (695)
|-...+.|.++.||.+..-|.-.-... .-|-..++|..
T Consensus 177 G~~~~~~~~~~~~G~~~g~Cse~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 177 GRLNQTTLMSTRPGLYYGQCSEICGSNHSFMPIVLELVP 215 (227)
T ss_pred CceEEEEEecCCcEEEEEECccccCcCcCCceEEEEEeC
Confidence 677788999999999999998754332 34666666543
No 113
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=20.45 E-value=2.2e+02 Score=31.96 Aligned_cols=50 Identities=22% Similarity=0.201 Sum_probs=33.8
Q ss_pred cEEEEEEEeCCCCCccEEEEEcCcceeEecCCCCccceeEEeEEEEcCCceEEEEEEc
Q psy978 245 HSYRFRIINAGYLNCPIELSIANHTLTAINSDGGDIKPISVGSIVSYAGERWDFILNA 302 (695)
Q Consensus 245 ~~~rlRliNa~~~~~~~~~~i~gh~~~Via~DG~~v~p~~~d~l~l~pGeR~dVlv~a 302 (695)
-.|+++|.|.+.....+.+.++|. +|.-++-. .+.+.|.|||+.++.|..
T Consensus 348 N~Y~~~i~Nk~~~~~~~~l~v~g~-------~~~~~~~~-~~~i~v~~g~~~~~~v~v 397 (434)
T TIGR02745 348 NTYTLKILNKTEQPHEYYLSVLGL-------PGIKIEGP-GAPIHVKAGEKVKLPVFL 397 (434)
T ss_pred EEEEEEEEECCCCCEEEEEEEecC-------CCcEEEcC-CceEEECCCCEEEEEEEE
Confidence 479999999998776777777663 23222111 127899999998766554
Done!